Query 039590
Match_columns 379
No_of_seqs 152 out of 1577
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 11:07:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039590.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039590hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 5.6E-34 1.2E-38 250.6 26.2 214 104-331 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 6E-15 1.3E-19 122.3 16.4 137 214-351 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.6 2.7E-14 5.9E-19 113.4 14.2 104 214-317 1-118 (129)
4 PLN03215 ascorbic acid mannose 99.5 9.1E-12 2E-16 113.8 25.7 322 1-352 1-372 (373)
5 PHA02713 hypothetical protein; 99.2 1.3E-09 2.8E-14 107.7 20.0 211 103-338 298-542 (557)
6 KOG4441 Proteins containing BT 99.1 7.3E-09 1.6E-13 102.2 21.0 212 102-338 326-555 (571)
7 PHA02713 hypothetical protein; 99.1 1.6E-08 3.4E-13 100.0 21.7 216 120-359 273-522 (557)
8 PHA03098 kelch-like protein; P 99.1 1.7E-08 3.6E-13 100.1 21.4 193 120-337 312-519 (534)
9 PHA02790 Kelch-like protein; P 99.1 2.7E-08 5.9E-13 96.8 21.5 184 120-336 288-477 (480)
10 PLN02153 epithiospecifier prot 99.1 2.4E-08 5.1E-13 93.2 20.1 205 120-338 51-293 (341)
11 KOG4441 Proteins containing BT 99.0 3.1E-08 6.6E-13 97.8 20.9 195 119-337 301-507 (571)
12 PLN02193 nitrile-specifier pro 99.0 7E-08 1.5E-12 93.7 20.5 203 120-338 194-419 (470)
13 TIGR03548 mutarot_permut cycli 99.0 2.3E-07 4.9E-12 85.9 21.9 220 120-361 40-315 (323)
14 TIGR03547 muta_rot_YjhT mutatr 98.9 9E-07 1.9E-11 82.8 22.6 238 106-359 15-331 (346)
15 PF12937 F-box-like: F-box-lik 98.9 8.5E-10 1.9E-14 70.7 1.4 40 7-46 3-42 (47)
16 PRK14131 N-acetylneuraminic ac 98.8 1.8E-06 4E-11 81.5 23.5 240 104-359 34-353 (376)
17 smart00256 FBOX A Receptor for 98.8 2.2E-09 4.7E-14 66.7 1.1 39 8-46 1-39 (41)
18 PLN02153 epithiospecifier prot 98.7 1.8E-06 3.9E-11 80.5 20.3 172 183-358 50-260 (341)
19 PF00646 F-box: F-box domain; 98.7 4.2E-09 9.2E-14 67.9 1.8 42 7-48 5-46 (48)
20 PHA03098 kelch-like protein; P 98.7 1.7E-06 3.7E-11 85.8 19.5 214 121-359 266-497 (534)
21 PLN02193 nitrile-specifier pro 98.7 7.2E-06 1.6E-10 79.7 23.3 174 183-358 193-386 (470)
22 PHA02790 Kelch-like protein; P 98.5 4.2E-06 9E-11 81.6 16.9 164 184-359 288-456 (480)
23 TIGR03548 mutarot_permut cycli 98.5 1.4E-05 3E-10 74.0 19.6 137 119-275 88-233 (323)
24 KOG1230 Protein containing rep 98.4 1.2E-05 2.6E-10 73.0 14.5 211 119-340 98-351 (521)
25 PRK14131 N-acetylneuraminic ac 98.4 8.2E-05 1.8E-09 70.3 20.5 145 184-334 190-373 (376)
26 TIGR03547 muta_rot_YjhT mutatr 98.1 9.7E-05 2.1E-09 69.1 15.9 148 185-337 31-235 (346)
27 KOG4693 Uncharacterized conser 98.1 2.4E-05 5.1E-10 67.2 10.0 185 120-319 106-310 (392)
28 KOG4693 Uncharacterized conser 97.8 0.00039 8.4E-09 59.9 11.7 155 185-341 107-288 (392)
29 KOG0281 Beta-TrCP (transducin 97.8 0.0009 2E-08 59.7 13.7 41 7-47 77-121 (499)
30 KOG0379 Kelch repeat-containin 97.5 0.006 1.3E-07 59.5 17.2 206 120-340 89-312 (482)
31 KOG2120 SCF ubiquitin ligase, 97.4 4.7E-05 1E-09 66.9 1.0 40 7-46 100-139 (419)
32 KOG0379 Kelch repeat-containin 97.3 0.014 2.9E-07 57.1 16.0 175 184-360 89-286 (482)
33 KOG1230 Protein containing rep 96.9 0.099 2.2E-06 48.3 16.8 145 184-330 99-276 (521)
34 KOG2997 F-box protein FBX9 [Ge 96.0 0.0024 5.2E-08 56.6 0.9 43 7-49 109-156 (366)
35 KOG4152 Host cell transcriptio 95.6 0.51 1.1E-05 45.0 14.0 203 120-338 58-311 (830)
36 KOG2055 WD40 repeat protein [G 95.4 0.5 1.1E-05 44.3 13.3 153 211-379 261-419 (514)
37 PF02191 OLF: Olfactomedin-lik 95.3 1.2 2.7E-05 39.3 15.2 122 208-338 67-212 (250)
38 COG4257 Vgb Streptogramin lyas 94.3 3.5 7.7E-05 36.5 15.7 210 106-338 70-314 (353)
39 smart00284 OLF Olfactomedin-li 94.3 2.1 4.6E-05 37.8 13.8 119 211-338 76-217 (255)
40 PF13964 Kelch_6: Kelch motif 94.3 0.13 2.7E-06 32.9 4.8 38 212-249 5-44 (50)
41 PF08450 SGL: SMP-30/Gluconola 94.2 3.6 7.7E-05 36.1 18.5 197 107-339 10-223 (246)
42 COG3055 Uncharacterized protei 94.1 3.9 8.5E-05 37.5 15.2 133 181-319 194-357 (381)
43 PF01344 Kelch_1: Kelch motif; 93.4 0.25 5.4E-06 30.9 4.9 38 212-249 5-44 (47)
44 PF13964 Kelch_6: Kelch motif 93.0 0.23 5E-06 31.6 4.3 36 105-140 8-49 (50)
45 TIGR01640 F_box_assoc_1 F-box 92.9 4.1 9E-05 35.4 13.6 116 216-338 3-136 (230)
46 PF07646 Kelch_2: Kelch motif; 92.8 0.32 6.9E-06 30.8 4.8 41 211-251 4-48 (49)
47 KOG0274 Cdc4 and related F-box 92.0 14 0.00031 36.7 19.9 42 7-48 110-151 (537)
48 COG3055 Uncharacterized protei 91.0 8.6 0.00019 35.4 13.2 172 183-361 113-361 (381)
49 KOG4341 F-box protein containi 89.0 0.15 3.3E-06 47.4 0.7 37 7-43 74-110 (483)
50 smart00612 Kelch Kelch domain. 88.7 0.7 1.5E-05 28.4 3.5 16 184-199 16-31 (47)
51 COG4257 Vgb Streptogramin lyas 88.3 6.3 0.00014 35.0 9.9 124 103-254 194-318 (353)
52 PF13418 Kelch_4: Galactose ox 85.0 2.7 5.9E-05 26.3 4.7 29 309-337 10-45 (49)
53 PF10282 Lactonase: Lactonase, 84.9 20 0.00043 33.4 12.4 115 218-338 154-286 (345)
54 KOG3545 Olfactomedin and relat 83.9 20 0.00044 31.3 10.8 119 211-338 70-211 (249)
55 KOG0310 Conserved WD40 repeat- 83.8 42 0.0009 32.2 15.1 151 184-351 49-207 (487)
56 PF07250 Glyoxal_oxid_N: Glyox 83.2 15 0.00033 32.3 10.0 162 187-357 50-226 (243)
57 PLN02772 guanylate kinase 83.2 7.5 0.00016 36.7 8.5 75 211-287 27-107 (398)
58 PF13418 Kelch_4: Galactose ox 82.1 2.5 5.3E-05 26.5 3.6 38 212-249 5-45 (49)
59 PF07893 DUF1668: Protein of u 81.3 38 0.00082 31.6 12.6 83 187-274 203-297 (342)
60 PF02897 Peptidase_S9_N: Proly 79.5 59 0.0013 31.0 19.6 147 183-337 252-412 (414)
61 PRK11138 outer membrane biogen 78.6 59 0.0013 30.8 13.4 110 212-335 63-184 (394)
62 PF07762 DUF1618: Protein of u 78.5 19 0.00041 28.1 8.4 65 234-298 7-98 (131)
63 PF08450 SGL: SMP-30/Gluconola 78.3 45 0.00098 29.0 15.0 106 218-337 11-130 (246)
64 PF06433 Me-amine-dh_H: Methyl 77.3 42 0.00091 31.0 11.1 118 212-335 187-326 (342)
65 smart00564 PQQ beta-propeller 76.8 9.1 0.0002 21.4 4.6 26 310-335 5-30 (33)
66 PF07646 Kelch_2: Kelch motif; 76.2 6.4 0.00014 24.7 4.2 36 260-295 6-47 (49)
67 PF13360 PQQ_2: PQQ-like domai 75.5 51 0.0011 28.2 16.7 108 214-335 32-146 (238)
68 smart00612 Kelch Kelch domain. 73.9 11 0.00024 22.7 4.9 18 232-249 14-31 (47)
69 PF10282 Lactonase: Lactonase, 73.3 79 0.0017 29.4 21.4 115 218-337 202-332 (345)
70 PF13360 PQQ_2: PQQ-like domai 73.1 59 0.0013 27.8 12.8 107 215-335 119-236 (238)
71 PF13570 PQQ_3: PQQ-like domai 72.8 5.7 0.00012 23.7 3.1 27 211-242 14-40 (40)
72 TIGR03300 assembly_YfgL outer 71.5 89 0.0019 29.2 13.5 127 187-334 79-213 (377)
73 PF13415 Kelch_3: Galactose ox 69.8 5.7 0.00012 24.9 2.8 23 120-142 20-42 (49)
74 KOG2437 Muskelin [Signal trans 68.7 5.7 0.00012 38.2 3.6 146 121-274 231-394 (723)
75 PRK11138 outer membrane biogen 67.9 1.1E+02 0.0024 28.9 16.3 106 212-335 250-359 (394)
76 PF01011 PQQ: PQQ enzyme repea 67.7 11 0.00024 22.1 3.6 24 313-336 2-25 (38)
77 COG1520 FOG: WD40-like repeat 66.9 1.1E+02 0.0024 28.6 12.9 133 187-336 39-178 (370)
78 PF01344 Kelch_1: Kelch motif; 66.8 26 0.00057 21.3 6.9 39 259-297 5-47 (47)
79 TIGR03074 PQQ_membr_DH membran 62.4 1.6E+02 0.0035 30.8 12.9 33 210-247 186-220 (764)
80 cd01206 Homer Homer type EVH1 60.9 24 0.00053 26.5 4.9 39 120-169 12-51 (111)
81 TIGR03300 assembly_YfgL outer 59.9 1.5E+02 0.0033 27.7 14.0 106 212-335 235-344 (377)
82 TIGR03075 PQQ_enz_alc_DH PQQ-d 59.4 1.9E+02 0.0042 28.8 12.8 112 211-335 62-195 (527)
83 KOG4152 Host cell transcriptio 58.4 1.9E+02 0.0041 28.4 12.8 102 184-287 231-362 (830)
84 PF08268 FBA_3: F-box associat 56.1 48 0.001 25.7 6.4 49 311-359 5-64 (129)
85 PF05096 Glu_cyclase_2: Glutam 56.1 1.5E+02 0.0032 26.5 12.7 137 183-337 68-211 (264)
86 PF07893 DUF1668: Protein of u 55.1 1.8E+02 0.0039 27.1 15.1 127 107-254 75-223 (342)
87 KOG1963 WD40 repeat protein [G 49.5 1.6E+02 0.0035 30.5 10.0 96 234-330 433-539 (792)
88 cd01207 Ena-Vasp Enabled-VASP- 49.3 82 0.0018 24.0 6.2 42 120-169 10-51 (111)
89 PF03088 Str_synth: Strictosid 48.6 83 0.0018 22.8 6.0 18 320-337 36-53 (89)
90 COG2706 3-carboxymuconate cycl 44.8 2.6E+02 0.0057 25.9 18.2 150 185-338 169-332 (346)
91 KOG0321 WD40 repeat-containing 44.3 88 0.0019 31.3 7.1 109 219-334 65-180 (720)
92 PF12768 Rax2: Cortical protei 43.6 56 0.0012 29.5 5.4 106 184-295 17-130 (281)
93 COG4946 Uncharacterized protei 42.7 3.3E+02 0.0072 26.5 12.0 141 185-337 289-439 (668)
94 KOG2437 Muskelin [Signal trans 42.5 32 0.00068 33.4 3.7 127 211-337 263-420 (723)
95 PRK11028 6-phosphogluconolacto 41.6 2.7E+02 0.006 25.3 21.6 116 217-337 184-314 (330)
96 PLN02772 guanylate kinase 41.4 1.7E+02 0.0037 27.8 8.4 72 260-331 29-110 (398)
97 PF13013 F-box-like_2: F-box-l 40.6 12 0.00026 28.3 0.6 27 7-33 24-50 (109)
98 KOG0289 mRNA splicing factor [ 40.5 3.4E+02 0.0074 26.1 11.4 121 182-317 368-493 (506)
99 PRK11028 6-phosphogluconolacto 39.5 3E+02 0.0064 25.1 13.0 95 233-330 12-111 (330)
100 KOG0316 Conserved WD40 repeat- 39.3 2.7E+02 0.0058 24.5 14.3 125 187-334 85-218 (307)
101 KOG0279 G protein beta subunit 38.3 1.3E+02 0.0027 27.0 6.5 71 263-338 201-272 (315)
102 PF12217 End_beta_propel: Cata 36.8 2.3E+02 0.0049 25.3 7.7 64 212-275 194-259 (367)
103 PF12458 DUF3686: ATPase invol 36.6 56 0.0012 31.0 4.4 142 106-287 236-385 (448)
104 PF13854 Kelch_5: Kelch motif 36.0 72 0.0016 19.1 3.5 34 209-242 5-41 (42)
105 PF15525 DUF4652: Domain of un 35.9 2.7E+02 0.0058 23.5 7.9 19 320-338 139-157 (200)
106 KOG0647 mRNA export protein (c 35.7 2.2E+02 0.0048 25.9 7.6 59 277-339 49-112 (347)
107 PF10902 DUF2693: Protein of u 34.7 61 0.0013 23.2 3.4 18 321-338 49-66 (83)
108 KOG0289 mRNA splicing factor [ 34.6 4.3E+02 0.0092 25.4 11.8 115 215-337 355-470 (506)
109 KOG1310 WD40 repeat protein [G 33.0 2.8E+02 0.006 27.6 8.3 112 106-242 59-179 (758)
110 KOG0293 WD40 repeat-containing 32.9 1.1E+02 0.0023 29.1 5.5 70 263-336 404-477 (519)
111 PF07370 DUF1489: Protein of u 32.0 26 0.00057 27.5 1.3 29 214-242 43-71 (137)
112 KOG0265 U5 snRNP-specific prot 31.9 2.4E+02 0.0052 25.6 7.3 67 265-337 58-129 (338)
113 KOG2502 Tub family proteins [G 31.5 28 0.0006 32.0 1.5 35 7-41 47-89 (355)
114 PF05096 Glu_cyclase_2: Glutam 31.4 3.8E+02 0.0083 23.9 14.5 111 217-338 54-167 (264)
115 KOG0315 G-protein beta subunit 31.1 3.8E+02 0.0083 23.8 12.7 144 184-337 147-296 (311)
116 PF14870 PSII_BNR: Photosynthe 30.6 4.2E+02 0.0092 24.2 12.5 96 187-294 39-140 (302)
117 TIGR02658 TTQ_MADH_Hv methylam 29.4 4.8E+02 0.01 24.5 21.9 115 216-336 203-338 (352)
118 COG2706 3-carboxymuconate cycl 28.6 4.8E+02 0.01 24.2 14.9 115 218-338 155-285 (346)
119 PF15408 PH_7: Pleckstrin homo 28.6 14 0.0003 26.3 -0.7 24 23-46 77-100 (104)
120 KOG0294 WD40 repeat-containing 27.3 5E+02 0.011 23.9 12.2 112 212-334 46-162 (362)
121 KOG0292 Vesicle coat complex C 26.7 3.6E+02 0.0078 28.6 8.3 70 262-332 212-283 (1202)
122 KOG0303 Actin-binding protein 26.5 5.7E+02 0.012 24.3 11.4 121 212-337 178-304 (472)
123 PF06058 DCP1: Dcp1-like decap 26.0 1.3E+02 0.0029 23.2 4.3 29 313-341 21-49 (122)
124 KOG0301 Phospholipase A2-activ 25.2 7.6E+02 0.016 25.4 11.6 87 234-329 201-288 (745)
125 PF02393 US22: US22 like; Int 24.5 1.3E+02 0.0028 23.0 4.1 26 312-337 82-107 (125)
126 KOG0315 G-protein beta subunit 24.5 5.1E+02 0.011 23.1 11.9 104 232-340 145-256 (311)
127 PF09826 Beta_propel: Beta pro 24.1 7.3E+02 0.016 24.7 11.8 127 232-361 247-392 (521)
128 PF00568 WH1: WH1 domain; Int 23.4 2.4E+02 0.0052 21.2 5.3 38 120-169 17-55 (111)
129 PLN00181 protein SPA1-RELATED; 23.1 8.9E+02 0.019 25.4 21.8 95 233-332 640-741 (793)
130 KOG4497 Uncharacterized conser 22.0 6.5E+02 0.014 23.4 8.4 71 265-337 58-130 (447)
131 KOG0306 WD40-repeat-containing 21.8 6.2E+02 0.013 26.3 8.8 92 233-329 43-137 (888)
132 KOG0319 WD40-repeat-containing 21.6 8.2E+02 0.018 25.3 9.6 56 234-294 41-104 (775)
133 cd00216 PQQ_DH Dehydrogenases 21.5 7.8E+02 0.017 24.1 12.0 32 211-247 54-87 (488)
134 PLN02919 haloacid dehalogenase 21.2 1.1E+03 0.024 25.9 21.3 204 104-336 631-895 (1057)
135 cd00837 EVH1 EVH1 (Enabled, Va 20.8 3.6E+02 0.0078 20.0 6.3 39 120-169 10-48 (104)
136 cd01262 PH_PDK1 3-Phosphoinosi 20.7 3E+02 0.0064 20.0 4.8 28 311-338 16-44 (89)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=5.6e-34 Score=250.59 Aligned_cols=214 Identities=23% Similarity=0.368 Sum_probs=161.1
Q ss_pred cceecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeee
Q 039590 104 GGPFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFA 183 (379)
Q Consensus 104 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~ 183 (379)
++|||||||+... ..++||||+||+++.||+++...... ....++||||+.+++||||++...... .....+
T Consensus 1 ~~sCnGLlc~~~~--~~~~V~NP~T~~~~~LP~~~~~~~~~---~~~~~~~G~d~~~~~YKVv~~~~~~~~---~~~~~~ 72 (230)
T TIGR01640 1 VVPCDGLICFSYG--KRLVVWNPSTGQSRWLPTPKSRRSNK---ESDTYFLGYDPIEKQYKVLCFSDRSGN---RNQSEH 72 (230)
T ss_pred CcccceEEEEecC--CcEEEECCCCCCEEecCCCCCccccc---ccceEEEeecccCCcEEEEEEEeecCC---CCCccE
Confidence 4799999998865 46999999999999999776432111 112689999999999999999754211 112244
Q ss_pred EEEEEEcCCCcccccccccCCcceeee-ccccEEECceEeeEeecCCCCc-cEEEEEECCCceEE-EecCCCCCC--CCC
Q 039590 184 HVAMYNLRTNSWRDLKSFKSDHYVMSF-WSGSLYVDGVCYWLSRFRNNDH-AVILSFHLGNDVFE-EVQEPYIPQ--SEP 258 (379)
Q Consensus 184 ~~~vyss~~~~W~~~~~~~~~~~~~~~-~~~~v~~~G~lywl~~~~~~~~-~~i~~fD~~~e~~~-~i~~P~~~~--~~~ 258 (379)
+ ||++++++||.+... ++... ...+|++||++||++....... ..|++||+.+|+|+ .+++|.... ...
T Consensus 73 ~--Vys~~~~~Wr~~~~~----~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~ 146 (230)
T TIGR01640 73 Q--VYTLGSNSWRTIECS----PPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDY 146 (230)
T ss_pred E--EEEeCCCCccccccC----CCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccc
Confidence 4 999999999999821 12222 3349999999999997653122 37999999999999 599987652 223
Q ss_pred cEEEEECCeEEEEEEcCCCCEEEEEEEcC---CeEEEEEEECC--CCCc---ccceEEeeCCeEEEEEeC--CE-EEEEe
Q 039590 259 TIIGVYNHSLCVLLSHNIENYYDIWVMKD---KCWIKQLSVGP--FVGV---QRPLGFWKKGAFFVVSTS--GH-LLLYD 327 (379)
Q Consensus 259 ~~l~~~~G~L~l~~~~~~~~~i~iW~l~~---~~W~~~~~i~~--~~~~---~~~~~~~~~~~il~~~~~--~~-l~~yd 327 (379)
..|++++|+|+++........++||+|++ ..|+++++|+. ...+ ..|+++..+|+|++...+ +. +++||
T Consensus 147 ~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~ 226 (230)
T TIGR01640 147 LSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYN 226 (230)
T ss_pred eEEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEe
Confidence 58999999999998864345699999997 57999999984 2223 247888889999998774 44 99999
Q ss_pred CCCC
Q 039590 328 PNTQ 331 (379)
Q Consensus 328 ~~t~ 331 (379)
++++
T Consensus 227 ~~~~ 230 (230)
T TIGR01640 227 VGEN 230 (230)
T ss_pred ccCC
Confidence 9875
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.66 E-value=6e-15 Score=122.29 Aligned_cols=137 Identities=21% Similarity=0.390 Sum_probs=96.0
Q ss_pred cEEECceEeeEeecCCCCc-cEEEEEECCCceE-EEecCCCCCC-CC-CcEEE-EECCeEEEEEEcCCCCEEEEEEEcC-
Q 039590 214 SLYVDGVCYWLSRFRNNDH-AVILSFHLGNDVF-EEVQEPYIPQ-SE-PTIIG-VYNHSLCVLLSHNIENYYDIWVMKD- 287 (379)
Q Consensus 214 ~v~~~G~lywl~~~~~~~~-~~i~~fD~~~e~~-~~i~~P~~~~-~~-~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~- 287 (379)
+|++||++||++....... ..|++||+.+|+| +.+++|.... .. ...|. ..+|+||++........++||+|++
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY 80 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence 6899999999998864222 2799999999999 8899998774 22 23674 4578999998764556799999995
Q ss_pred ----CeEEEEEEECCCCC--cc-----cceEEeeCCeEEEEEe-C------CEEEEEeCCCCcEEEeEEeecc--cee-E
Q 039590 288 ----KCWIKQLSVGPFVG--VQ-----RPLGFWKKGAFFVVST-S------GHLLLYDPNTQEMRDLGVTCFD--VSV-H 346 (379)
Q Consensus 288 ----~~W~~~~~i~~~~~--~~-----~~~~~~~~~~il~~~~-~------~~l~~yd~~t~~~~~v~~~~~~--~~~-~ 346 (379)
.+|+|.++|+.... .. ..+.+.+++++++... + ..++.|+ +++..+++.+.... ... +
T Consensus 81 ~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~~~~~~~ 159 (164)
T PF07734_consen 81 GYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSSCWPSIC 159 (164)
T ss_pred ccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCCCCCCEE
Confidence 69999999984332 11 1233344456666543 1 4577777 77778888773322 223 7
Q ss_pred EEeee
Q 039590 347 MYKES 351 (379)
Q Consensus 347 ~y~~s 351 (379)
.|+||
T Consensus 160 ~YvpS 164 (164)
T PF07734_consen 160 NYVPS 164 (164)
T ss_pred EECCC
Confidence 88886
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.60 E-value=2.7e-14 Score=113.42 Aligned_cols=104 Identities=24% Similarity=0.432 Sum_probs=80.8
Q ss_pred cEEECceEeeEeecCCCCccEEEEEECCCceEEEecCCCC--CCCCCcEEEEECCeEEEEEEcCCC--CEEEEEEEcC--
Q 039590 214 SLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYI--PQSEPTIIGVYNHSLCVLLSHNIE--NYYDIWVMKD-- 287 (379)
Q Consensus 214 ~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~--~~~~~~~l~~~~G~L~l~~~~~~~--~~i~iW~l~~-- 287 (379)
|+++||++||++.........|++||+++|+|+.|++|.. .......|++++|+|+++...... ..++||+|+|
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 6899999999998844456799999999999999999922 233445999999999999887432 4799999998
Q ss_pred -CeEEEEEEECCCC-------CcccceEEeeCCeEEEE
Q 039590 288 -KCWIKQLSVGPFV-------GVQRPLGFWKKGAFFVV 317 (379)
Q Consensus 288 -~~W~~~~~i~~~~-------~~~~~~~~~~~~~il~~ 317 (379)
++|++...+-+.. ....+.++.++|+|++.
T Consensus 81 k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 81 KQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred cceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 7899887654332 12456667777888776
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.53 E-value=9.1e-12 Score=113.81 Aligned_cols=322 Identities=14% Similarity=0.144 Sum_probs=160.0
Q ss_pred CCCCCCCCCHHHHHHHHhcCC-cchhhhheeccccccccccChhhHhhhhccCCCCcEEEEEeeCCCCCeEeeeCCCCCC
Q 039590 1 MAKSNGNFPEDVMIEVLSRLS-VKSLLRFKCVCREWCSLFENPSFISKHLSNDDNDRLFVTYMVTDDGDDYSYPRDSFCL 79 (379)
Q Consensus 1 m~~~~~~LP~Dll~~IL~rLP-~~sl~r~r~VcK~W~~li~s~~F~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 79 (379)
|+.++ .||+|||..|..||| ..++.|||+|||+||+.+.... +.......+.+++.. ..+...+.+ .+....
T Consensus 1 ~~~Ws-~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~ 73 (373)
T PLN03215 1 MADWS-TLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---KKNPFRTRPLILFNP-INPSETLTD--DRSYIS 73 (373)
T ss_pred CCChh-hCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---ccCCcccccccccCc-ccCCCCccc--cccccc
Confidence 77888 799999999999998 7899999999999999876421 000010111111110 000000000 000000
Q ss_pred CCCCCccccCCCccCCCCcccccccceecceEEEecC--CCCeEEEEecCCCceecCCCCcccCCCcccC-CccEEEE-e
Q 039590 80 FPDETLTDISLADFDFQQPMREFLGGPFDGIFCIHGP--TNDRLILCNLETKESRTLPKRRVVFPRFCSI-SDTCMGF-G 155 (379)
Q Consensus 80 ~~~~~~~~~~~p~~~~~~~~~~~~~~s~~GLl~~~~~--~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~-~~~~~~~-g 155 (379)
.+...+. ..-+.. .....++..|+|.-... .++++.+.||.++....+|+-.......... ....+.+ +
T Consensus 74 ~~~~~ls--~~~~~r-----~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~ 146 (373)
T PLN03215 74 RPGAFLS--RAAFFR-----VTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLD 146 (373)
T ss_pred cccceee--eeEEEE-----eecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEe
Confidence 0000000 000000 00112457888887632 3457999999999977776422111000000 0000111 1
Q ss_pred eecCC---CceEEEEEEEEeecccccceeeeEEEEEE------cCCCcccccccccCCcceeeeccccEEECceEeeEee
Q 039590 156 LDIMS---NDYKLVMIHSLWNEKRQEIYEFAHVAMYN------LRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSR 226 (379)
Q Consensus 156 ~d~~~---~~ykVv~~~~~~~~~~~~~~~~~~~~vys------s~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~ 226 (379)
.+... -.|+-+.+......+ .......- |+. -+.++|..++ .. . .....-++++|.+|-+..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vl~--i~~~g~l~~w~~~~Wt~l~----~~-~-~~~~DIi~~kGkfYAvD~ 217 (373)
T PLN03215 147 WAKRRETRPGYQRSALVKVKEGD-NHRDGVLG--IGRDGKINYWDGNVLKALK----QM-G-YHFSDIIVHKGQTYALDS 217 (373)
T ss_pred cccccccccceeEEEEEEeecCC-CcceEEEE--EeecCcEeeecCCeeeEcc----CC-C-ceeeEEEEECCEEEEEcC
Confidence 00000 012111111111000 00000011 111 1247888887 21 1 114567999999999965
Q ss_pred cCCCCccEEEEEECCCceEEEecCC----C--CCCCCCcEEEEECCeEEEEEEcC---------------CCCEEEEEEE
Q 039590 227 FRNNDHAVILSFHLGNDVFEEVQEP----Y--IPQSEPTIIGVYNHSLCVLLSHN---------------IENYYDIWVM 285 (379)
Q Consensus 227 ~~~~~~~~i~~fD~~~e~~~~i~~P----~--~~~~~~~~l~~~~G~L~l~~~~~---------------~~~~i~iW~l 285 (379)
.+ .+.++|..-+ .+.+..+ . ........|++..|+|.+|.... ....++|+.+
T Consensus 218 ~G-----~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~Vfkl 291 (373)
T PLN03215 218 IG-----IVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKF 291 (373)
T ss_pred CC-----eEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEE
Confidence 55 6777774321 1222111 1 11112347999999999998641 1246899999
Q ss_pred cC--CeEEEEEEECCCCCc---ccceEE-------eeCCeEEEEEeCCEEEEEeCCCCcEEEeEEee--cccee-EEEee
Q 039590 286 KD--KCWIKQLSVGPFVGV---QRPLGF-------WKKGAFFVVSTSGHLLLYDPNTQEMRDLGVTC--FDVSV-HMYKE 350 (379)
Q Consensus 286 ~~--~~W~~~~~i~~~~~~---~~~~~~-------~~~~~il~~~~~~~l~~yd~~t~~~~~v~~~~--~~~~~-~~y~~ 350 (379)
+. ..|+++.+++-...+ ...+++ .+.+.|||. .+....+||++.++...+...- ..+.. -.|.|
T Consensus 292 D~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFt-dd~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~ 370 (373)
T PLN03215 292 DDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFT-EDTMPKVFKLDNGNGSSIETTISESSQSSFEMFVP 370 (373)
T ss_pred cCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEE-CCCcceEEECCCCCccceEeecCccccchheeecc
Confidence 87 899999888622110 111111 123556665 5667889999999987766432 22222 56666
Q ss_pred ee
Q 039590 351 SL 352 (379)
Q Consensus 351 sl 352 (379)
|+
T Consensus 371 ~~ 372 (373)
T PLN03215 371 SF 372 (373)
T ss_pred cc
Confidence 65
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.21 E-value=1.3e-09 Score=107.71 Aligned_cols=211 Identities=12% Similarity=0.069 Sum_probs=133.4
Q ss_pred ccceecceEEEecC-C-----CCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeeccc
Q 039590 103 LGGPFDGIFCIHGP-T-----NDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKR 176 (379)
Q Consensus 103 ~~~s~~GLl~~~~~-~-----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~ 176 (379)
.++..+|-|.+.+. . .+.+..+||.+++|..+|+++..+... ....++ =|+..+++....
T Consensus 298 ~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-------~~~~~~-----g~IYviGG~~~~-- 363 (557)
T PHA02713 298 ASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-------SLAVID-----DTIYAIGGQNGT-- 363 (557)
T ss_pred EEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-------eEEEEC-----CEEEEECCcCCC--
Confidence 34555666655532 1 235889999999999999988655322 111111 245555432111
Q ss_pred ccceeeeEEEEEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecCCC-------------------CccEEEE
Q 039590 177 QEIYEFAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNN-------------------DHAVILS 237 (379)
Q Consensus 177 ~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-------------------~~~~i~~ 237 (379)
......+ +|++.+++|+.++ +++.......++.++|.+|.+++.... ....+.+
T Consensus 364 -~~~~sve--~Ydp~~~~W~~~~----~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~ 436 (557)
T PHA02713 364 -NVERTIE--CYTMGDDKWKMLP----DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIR 436 (557)
T ss_pred -CCCceEE--EEECCCCeEEECC----CCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEE
Confidence 1112345 9999999999998 343333355678899999999875311 1246999
Q ss_pred EECCCceEEEec-CCCCCCCCCcEEEEECCeEEEEEEcCCC----CEEEEEEEcC-CeEEEEEEECCCCCcccceEEeeC
Q 039590 238 FHLGNDVFEEVQ-EPYIPQSEPTIIGVYNHSLCVLLSHNIE----NYYDIWVMKD-KCWIKQLSVGPFVGVQRPLGFWKK 311 (379)
Q Consensus 238 fD~~~e~~~~i~-~P~~~~~~~~~l~~~~G~L~l~~~~~~~----~~i~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~ 311 (379)
||+.+++|+.++ +|... ....+++.+|+|+++++.... ..++.+-.+. +.|+.+..++.. .....+. .-+
T Consensus 437 YDP~td~W~~v~~m~~~r--~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~-r~~~~~~-~~~ 512 (557)
T PHA02713 437 YDTVNNIWETLPNFWTGT--IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR-LSALHTI-LHD 512 (557)
T ss_pred ECCCCCeEeecCCCCccc--ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc-cccceeE-EEC
Confidence 999999999774 33322 234688999999999876321 1233444443 489988766522 1122222 236
Q ss_pred CeEEEEEe-CC--EEEEEeCCCCcEEEeEE
Q 039590 312 GAFFVVST-SG--HLLLYDPNTQEMRDLGV 338 (379)
Q Consensus 312 ~~il~~~~-~~--~l~~yd~~t~~~~~v~~ 338 (379)
|.|+++.+ ++ .+-.||++|++|+.+.-
T Consensus 513 ~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 513 NTIMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred CEEEEEeeecceeehhhcCcccccccchhh
Confidence 78888865 22 58899999999998874
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.13 E-value=7.3e-09 Score=102.15 Aligned_cols=212 Identities=12% Similarity=0.109 Sum_probs=142.1
Q ss_pred cccceecceEEEec-CC-----CCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecc
Q 039590 102 FLGGPFDGIFCIHG-PT-----NDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEK 175 (379)
Q Consensus 102 ~~~~s~~GLl~~~~-~~-----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~ 175 (379)
..++..+|.|-..+ .+ .+.+..+||.+.+|..+|++...+... +.+ .- ..++.++.+....
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~--------~v~--~l--~g~iYavGG~dg~- 392 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF--------GVA--VL--DGKLYAVGGFDGE- 392 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc--------eeE--EE--CCEEEEEeccccc-
Confidence 45677788777773 22 247899999999999999998766432 211 11 2444455433211
Q ss_pred cccceeeeEEEEEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecCCC--CccEEEEEECCCceEEEec-CCC
Q 039590 176 RQEIYEFAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNN--DHAVILSFHLGNDVFEEVQ-EPY 252 (379)
Q Consensus 176 ~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~--~~~~i~~fD~~~e~~~~i~-~P~ 252 (379)
......| .|+..+++|..++ .++........+.++|.+|-+++.... ....+.+||+.+++|+.++ ++.
T Consensus 393 --~~l~svE--~YDp~~~~W~~va----~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~ 464 (571)
T KOG4441|consen 393 --KSLNSVE--CYDPVTNKWTPVA----PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT 464 (571)
T ss_pred --cccccEE--EecCCCCcccccC----CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc
Confidence 1223556 9999999999999 444444567789999999999986532 3478999999999998874 444
Q ss_pred CCCCCCcEEEEECCeEEEEEEcCC---CCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEEEEe------CCEE
Q 039590 253 IPQSEPTIIGVYNHSLCVLLSHNI---ENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST------SGHL 323 (379)
Q Consensus 253 ~~~~~~~~l~~~~G~L~l~~~~~~---~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l 323 (379)
.. ..+.+++.+|+|+++++.+. ...++..-.+.+.|..+..+.... ...-....++.++++.+ -..+
T Consensus 465 ~R--~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r--s~~g~~~~~~~ly~vGG~~~~~~l~~v 540 (571)
T KOG4441|consen 465 RR--SGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR--SAVGVVVLGGKLYAVGGFDGNNNLNTV 540 (571)
T ss_pred cc--ccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc--ccccEEEECCEEEEEecccCcccccee
Confidence 33 23468899999999998853 222333333338999885554322 11112233567777754 2468
Q ss_pred EEEeCCCCcEEEeEE
Q 039590 324 LLYDPNTQEMRDLGV 338 (379)
Q Consensus 324 ~~yd~~t~~~~~v~~ 338 (379)
-.||+++++|+...-
T Consensus 541 e~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 541 ECYDPETDTWTEVTE 555 (571)
T ss_pred EEcCCCCCceeeCCC
Confidence 999999999998763
No 7
>PHA02713 hypothetical protein; Provisional
Probab=99.10 E-value=1.6e-08 Score=100.03 Aligned_cols=216 Identities=11% Similarity=0.110 Sum_probs=130.5
Q ss_pred eEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCcccccc
Q 039590 120 RLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDLK 199 (379)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 199 (379)
.+..+||.|++|..+++++..+... ..+. .+ =+|+.+++.... ......++.|+..++.|..++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~-----~~a~--l~-----~~IYviGG~~~~----~~~~~~v~~Yd~~~n~W~~~~ 336 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINY-----ASAI--VD-----NEIIIAGGYNFN----NPSLNKVYKINIENKIHVELP 336 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccce-----EEEE--EC-----CEEEEEcCCCCC----CCccceEEEEECCCCeEeeCC
Confidence 4677899999999999887644211 0111 11 144444332111 111234459999999999888
Q ss_pred cccCCcceeeeccccEEECceEeeEeecCC-CCccEEEEEECCCceEEEecC-CCCCCCCCcEEEEECCeEEEEEEcCCC
Q 039590 200 SFKSDHYVMSFWSGSLYVDGVCYWLSRFRN-NDHAVILSFHLGNDVFEEVQE-PYIPQSEPTIIGVYNHSLCVLLSHNIE 277 (379)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~i~~fD~~~e~~~~i~~-P~~~~~~~~~l~~~~G~L~l~~~~~~~ 277 (379)
+++..+.....+.++|.+|.+++... .....+.+||+.+++|..++. |... .....++++|+|+++++....
T Consensus 337 ----~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r--~~~~~~~~~g~IYviGG~~~~ 410 (557)
T PHA02713 337 ----PMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIAL--SSYGMCVLDQYIYIIGGRTEH 410 (557)
T ss_pred ----CCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccc--ccccEEEECCEEEEEeCCCcc
Confidence 44333335567899999999988642 223469999999999998753 4332 233677899999999876311
Q ss_pred C-------------------EEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEEEeC-------CEEEEEeCC
Q 039590 278 N-------------------YYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTS-------GHLLLYDPN 329 (379)
Q Consensus 278 ~-------------------~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~-------~~l~~yd~~ 329 (379)
. .-.+...+- +.|+.+..+.... ....+ +.-+|.||++.+. ..+..||++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r-~~~~~-~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~ 488 (557)
T PHA02713 411 IDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT-IRPGV-VSHKDDIYVVCDIKDEKNVKTCIFRYNTN 488 (557)
T ss_pred cccccccccccccccccccccceEEEECCCCCeEeecCCCCccc-ccCcE-EEECCEEEEEeCCCCCCccceeEEEecCC
Confidence 0 112333443 8998776554221 12222 3346788888642 236789999
Q ss_pred C-CcEEEeEEee-cc-cee-EEEeeeeeecCCCC
Q 039590 330 T-QEMRDLGVTC-FD-VSV-HMYKESLIRLKGGD 359 (379)
Q Consensus 330 t-~~~~~v~~~~-~~-~~~-~~y~~sl~~~~~~~ 359 (379)
+ ++|+.+.--. .. ... ..+.+.|--+++.+
T Consensus 489 ~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~ 522 (557)
T PHA02713 489 TYNGWELITTTESRLSALHTILHDNTIMMLHCYE 522 (557)
T ss_pred CCCCeeEccccCcccccceeEEECCEEEEEeeec
Confidence 9 8999887321 11 122 44444444455543
No 8
>PHA03098 kelch-like protein; Provisional
Probab=99.09 E-value=1.7e-08 Score=100.06 Aligned_cols=193 Identities=12% Similarity=0.157 Sum_probs=123.7
Q ss_pred eEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCcccccc
Q 039590 120 RLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDLK 199 (379)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 199 (379)
.++.+||.|++|..+|.++..+... ..+. .+ + +++.+++... ......+++|+..+++|+..+
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~-----~~~~--~~---~--~lyv~GG~~~-----~~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNP-----GVTV--FN---N--RIYVIGGIYN-----SISLNTVESWKPGESKWREEP 374 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccc-----eEEE--EC---C--EEEEEeCCCC-----CEecceEEEEcCCCCceeeCC
Confidence 5889999999999999877544322 1111 11 1 3444433211 111233449999999999888
Q ss_pred cccCCcceeeeccccEEECceEeeEeecCC--CCccEEEEEECCCceEEEec-CCCCCCCCCcEEEEECCeEEEEEEcCC
Q 039590 200 SFKSDHYVMSFWSGSLYVDGVCYWLSRFRN--NDHAVILSFHLGNDVFEEVQ-EPYIPQSEPTIIGVYNHSLCVLLSHNI 276 (379)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~~i~~fD~~~e~~~~i~-~P~~~~~~~~~l~~~~G~L~l~~~~~~ 276 (379)
+++.......++.++|.+|.+++... .....+..||+.+++|+.+. +|... .....+..+|+|+++++...
T Consensus 375 ----~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 375 ----PLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH--YGGCAIYHDGKIYVIGGISY 448 (534)
T ss_pred ----CcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc--cCceEEEECCEEEEECCccC
Confidence 33322335566889999999987432 12357999999999999875 34332 23356788999999987532
Q ss_pred CC----EEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEEEe------CCEEEEEeCCCCcEEEeE
Q 039590 277 EN----YYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST------SGHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 277 ~~----~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l~~yd~~t~~~~~v~ 337 (379)
.. .-.+|..+. ..|+++..++. +......+. -++.|+++.+ ...+..||+++++|+.+.
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNF-PRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCc-ccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 11 123666665 89998754432 222222233 3678887765 247999999999999876
No 9
>PHA02790 Kelch-like protein; Provisional
Probab=99.07 E-value=2.7e-08 Score=96.79 Aligned_cols=184 Identities=11% Similarity=0.079 Sum_probs=120.2
Q ss_pred eEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCcccccc
Q 039590 120 RLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDLK 199 (379)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 199 (379)
.+..+||.+++|..+|+++..+... .+...+ =++..+++... ....+ .|+..+++|..++
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~-------~~v~~~-----~~iYviGG~~~------~~sve--~ydp~~n~W~~~~ 347 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYA-------SGVPAN-----NKLYVVGGLPN------PTSVE--RWFHGDAAWVNMP 347 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcc-------eEEEEC-----CEEEEECCcCC------CCceE--EEECCCCeEEECC
Confidence 5778899999999999887654322 111111 24444432211 12345 9999999999988
Q ss_pred cccCCcceeeeccccEEECceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEEEECCeEEEEEEcCCCCE
Q 039590 200 SFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENY 279 (379)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~ 279 (379)
+++.......++.++|.+|.+++... ....+.+||+.+++|+.++.++.. ......++.+|+|++++..
T Consensus 348 ----~l~~~r~~~~~~~~~g~IYviGG~~~-~~~~ve~ydp~~~~W~~~~~m~~~-r~~~~~~~~~~~IYv~GG~----- 416 (480)
T PHA02790 348 ----SLLKPRCNPAVASINNVIYVIGGHSE-TDTTTEYLLPNHDQWQFGPSTYYP-HYKSCALVFGRRLFLVGRN----- 416 (480)
T ss_pred ----CCCCCCcccEEEEECCEEEEecCcCC-CCccEEEEeCCCCEEEeCCCCCCc-cccceEEEECCEEEEECCc-----
Confidence 34322335667899999999987642 234688999999999987543332 1223677899999999853
Q ss_pred EEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEEEEeC------CEEEEEeCCCCcEEEe
Q 039590 280 YDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTS------GHLLLYDPNTQEMRDL 336 (379)
Q Consensus 280 i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~------~~l~~yd~~t~~~~~v 336 (379)
.+++-.+.+.|+.+..++. +....... .-+|+|+++.+. ..+-.||+++++|+..
T Consensus 417 ~e~ydp~~~~W~~~~~m~~-~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 417 AEFYCESSNTWTLIDDPIY-PRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred eEEecCCCCcEeEcCCCCC-CccccEEE-EECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 3344334489998765542 22222222 336788888651 4688999999999754
No 10
>PLN02153 epithiospecifier protein
Probab=99.06 E-value=2.4e-08 Score=93.17 Aligned_cols=205 Identities=13% Similarity=0.151 Sum_probs=120.7
Q ss_pred eEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCcccccc
Q 039590 120 RLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDLK 199 (379)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 199 (379)
.++++||.+.+|..+|+........ ..++......+ +++.+..... ......+++|+.++++|+.++
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~------~~~~~~~~~~~--~iyv~GG~~~-----~~~~~~v~~yd~~t~~W~~~~ 117 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRIS------CLGVRMVAVGT--KLYIFGGRDE-----KREFSDFYSYDTVKNEWTFLT 117 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCc------cCceEEEEECC--EEEEECCCCC-----CCccCcEEEEECCCCEEEEec
Confidence 6899999999999988653211110 01111111112 3444432211 111234559999999999887
Q ss_pred cccCC-cceeeeccccEEECceEeeEeecCCC-------CccEEEEEECCCceEEEecCCCCC--CCCCcEEEEECCeEE
Q 039590 200 SFKSD-HYVMSFWSGSLYVDGVCYWLSRFRNN-------DHAVILSFHLGNDVFEEVQEPYIP--QSEPTIIGVYNHSLC 269 (379)
Q Consensus 200 ~~~~~-~~~~~~~~~~v~~~G~lywl~~~~~~-------~~~~i~~fD~~~e~~~~i~~P~~~--~~~~~~l~~~~G~L~ 269 (379)
.++.. .|..+..+.++..+|.+|.+.+.... ....+.+||+.+.+|..++.+... ......++..+|+|+
T Consensus 118 ~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iy 197 (341)
T PLN02153 118 KLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIW 197 (341)
T ss_pred cCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEE
Confidence 33111 12222356678899999999875421 123688999999999987653211 122235678999999
Q ss_pred EEEEcCC---------CCEEEEEEEcC--CeEEEEEEEC--CCCCcccceEEeeCCeEEEEEeC---------------C
Q 039590 270 VLLSHNI---------ENYYDIWVMKD--KCWIKQLSVG--PFVGVQRPLGFWKKGAFFVVSTS---------------G 321 (379)
Q Consensus 270 l~~~~~~---------~~~i~iW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~~---------------~ 321 (379)
++..... ...-++++.+- .+|+++.... |.+...... +.-++.|+++.+. .
T Consensus 198 v~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~n 276 (341)
T PLN02153 198 VVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAH-AVVGKYIIIFGGEVWPDLKGHLGPGTLSN 276 (341)
T ss_pred EEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeee-EEECCEEEEECcccCCccccccccccccc
Confidence 9875420 01123555543 8999886543 222212222 2335677777552 2
Q ss_pred EEEEEeCCCCcEEEeEE
Q 039590 322 HLLLYDPNTQEMRDLGV 338 (379)
Q Consensus 322 ~l~~yd~~t~~~~~v~~ 338 (379)
.++.||+++++|+.+..
T Consensus 277 ~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 277 EGYALDTETLVWEKLGE 293 (341)
T ss_pred cEEEEEcCccEEEeccC
Confidence 68999999999999863
No 11
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.04 E-value=3.1e-08 Score=97.77 Aligned_cols=195 Identities=15% Similarity=0.142 Sum_probs=132.3
Q ss_pred CeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCccccc
Q 039590 119 DRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDL 198 (379)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 198 (379)
+.+-.+||.+++|..+.+++..+... +.+.-. + +|..+++... +.......+ +|++.+++|..+
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~--------~~~~~~--~--~lYv~GG~~~--~~~~l~~ve--~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRV--------GVAVLN--G--KLYVVGGYDS--GSDRLSSVE--RYDPRTNQWTPV 364 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccc--------cEEEEC--C--EEEEEccccC--CCcccceEE--EecCCCCceecc
Confidence 35778899999999999888655432 222111 1 5555543321 111223445 999999999998
Q ss_pred ccccCCcceeeeccccEEECceEeeEeecCC-CCccEEEEEECCCceEEEec-CCCCCCCCCcEEEEECCeEEEEEEcCC
Q 039590 199 KSFKSDHYVMSFWSGSLYVDGVCYWLSRFRN-NDHAVILSFHLGNDVFEEVQ-EPYIPQSEPTIIGVYNHSLCVLLSHNI 276 (379)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~i~~fD~~~e~~~~i~-~P~~~~~~~~~l~~~~G~L~l~~~~~~ 276 (379)
+ ++...+.....+.++|.+|-+++... .....+..||+.+++|..+. ++.. ...+..++.+|+|+++++...
T Consensus 365 a----~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~--r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 365 A----PMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR--RSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred C----CccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc--eeeeEEEEECCEEEEEcCcCC
Confidence 8 45444556677999999999998763 34457999999999999875 4542 344588899999999998742
Q ss_pred C----CEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEEEEeC------CEEEEEeCCCCcEEEeE
Q 039590 277 E----NYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTS------GHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 277 ~----~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~------~~l~~yd~~t~~~~~v~ 337 (379)
. ..++.+--..+.|+.+..+.-.. ....++ .-++.||.+.+. ..+-.||+++++|+.+.
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R-~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRR-SGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred CccccceEEEEcCCCCceeecCCccccc-ccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 2 23333333338999887766322 112233 336788888662 24788999999999987
No 12
>PLN02193 nitrile-specifier protein
Probab=98.98 E-value=7e-08 Score=93.68 Aligned_cols=203 Identities=12% Similarity=0.078 Sum_probs=124.2
Q ss_pred eEEEEecCCCceecCCCCcccCCCcccCCccEEEE-eeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCccccc
Q 039590 120 RLILCNLETKESRTLPKRRVVFPRFCSISDTCMGF-GLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDL 198 (379)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~-g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 198 (379)
.++++||.+.+|..+|.....+... ...+.. .++ + +++.+..... ......+++|++.+++|+.+
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~----~~~~~~v~~~---~--~lYvfGG~~~-----~~~~ndv~~yD~~t~~W~~l 259 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLS----CLGVRMVSIG---S--TLYVFGGRDA-----SRQYNGFYSFDTTTNEWKLL 259 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCc----ccceEEEEEC---C--EEEEECCCCC-----CCCCccEEEEECCCCEEEEc
Confidence 5899999999999887542111100 001111 111 1 3333322111 01123456999999999998
Q ss_pred ccccCCcceeeeccccEEECceEeeEeecCC-CCccEEEEEECCCceEEEecCCCCC--CCCCcEEEEECCeEEEEEEcC
Q 039590 199 KSFKSDHYVMSFWSGSLYVDGVCYWLSRFRN-NDHAVILSFHLGNDVFEEVQEPYIP--QSEPTIIGVYNHSLCVLLSHN 275 (379)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~i~~fD~~~e~~~~i~~P~~~--~~~~~~l~~~~G~L~l~~~~~ 275 (379)
..... .|..+..+..+..++.+|.+.+... .....+.+||+.+.+|+.++.|... ......++..+|+++++....
T Consensus 260 ~~~~~-~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~ 338 (470)
T PLN02193 260 TPVEE-GPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFN 338 (470)
T ss_pred CcCCC-CCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCC
Confidence 73211 1222335566788999999987542 1234688999999999988764322 222346778899999998764
Q ss_pred CCCEEEEEEEcC--CeEEEEEEEC--CCCCcccceEEeeCCeEEEEEeC---------------CEEEEEeCCCCcEEEe
Q 039590 276 IENYYDIWVMKD--KCWIKQLSVG--PFVGVQRPLGFWKKGAFFVVSTS---------------GHLLLYDPNTQEMRDL 336 (379)
Q Consensus 276 ~~~~i~iW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~~---------------~~l~~yd~~t~~~~~v 336 (379)
....-++|+++- ..|+++..+. |.+...... +.-++.|+++.+. ..++.||++|++|+++
T Consensus 339 g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 339 GCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred CCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 222345677765 8999887653 222222222 2335677777542 2489999999999998
Q ss_pred EE
Q 039590 337 GV 338 (379)
Q Consensus 337 ~~ 338 (379)
..
T Consensus 418 ~~ 419 (470)
T PLN02193 418 DK 419 (470)
T ss_pred cc
Confidence 74
No 13
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.95 E-value=2.3e-07 Score=85.88 Aligned_cols=220 Identities=13% Similarity=0.089 Sum_probs=129.8
Q ss_pred eEEEE-ecCCC-ceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCcc--
Q 039590 120 RLILC-NLETK-ESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSW-- 195 (379)
Q Consensus 120 ~~~V~-NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~W-- 195 (379)
.+++. +|..+ +|..+++++..+..+ .+..++ + +++.+...... .....++.|+..++.|
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~-------~~~~~~---~--~lyviGG~~~~-----~~~~~v~~~d~~~~~w~~ 102 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYG-------ASVSVE---N--GIYYIGGSNSS-----ERFSSVYRITLDESKEEL 102 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccce-------EEEEEC---C--EEEEEcCCCCC-----CCceeEEEEEEcCCceee
Confidence 46666 45433 799988776544222 111221 1 34444322111 1123455899999988
Q ss_pred --cccccccCCcceeeeccccEEECceEeeEeecCC-CCccEEEEEECCCceEEEec-CCCCCCCCCcEEEEECCeEEEE
Q 039590 196 --RDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRN-NDHAVILSFHLGNDVFEEVQ-EPYIPQSEPTIIGVYNHSLCVL 271 (379)
Q Consensus 196 --~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~i~~fD~~~e~~~~i~-~P~~~~~~~~~l~~~~G~L~l~ 271 (379)
+.++ ++|.......++.++|.+|.+.+... .....+.+||+.+++|+.++ +|... ......+..+|+|+++
T Consensus 103 ~~~~~~----~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~ 177 (323)
T TIGR03548 103 ICETIG----NLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVKLQNELYVF 177 (323)
T ss_pred eeeEcC----CCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEEECCEEEEE
Confidence 4555 33222235667889999999987532 22357999999999999885 55432 2223567899999999
Q ss_pred EEcCCCCEEEEEEEcC--CeEEEEEEECC--CCC--cccceEEeeCCeEEEEEeC-------------------------
Q 039590 272 LSHNIENYYDIWVMKD--KCWIKQLSVGP--FVG--VQRPLGFWKKGAFFVVSTS------------------------- 320 (379)
Q Consensus 272 ~~~~~~~~i~iW~l~~--~~W~~~~~i~~--~~~--~~~~~~~~~~~~il~~~~~------------------------- 320 (379)
+........++|..+- .+|+++..+.. .+. .........++.|+++.+.
T Consensus 178 GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (323)
T TIGR03548 178 GGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKK 257 (323)
T ss_pred cCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHH
Confidence 9864333345666664 89987764421 111 1111122335677776541
Q ss_pred -------------CEEEEEeCCCCcEEEeEE-eecc--cee-EEEeeeeeecCCCCCc
Q 039590 321 -------------GHLLLYDPNTQEMRDLGV-TCFD--VSV-HMYKESLIRLKGGDNL 361 (379)
Q Consensus 321 -------------~~l~~yd~~t~~~~~v~~-~~~~--~~~-~~y~~sl~~~~~~~~~ 361 (379)
..+..||+++++|+.+.- .... ... ......|.-+++..++
T Consensus 258 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~p 315 (323)
T TIGR03548 258 EYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGELKP 315 (323)
T ss_pred HHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEeccccC
Confidence 469999999999998872 1111 222 6666677766665444
No 14
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.86 E-value=9e-07 Score=82.76 Aligned_cols=238 Identities=13% Similarity=0.167 Sum_probs=135.4
Q ss_pred eecceEEEe-cCCCCeEEEEec--CCCceecCCCCcc-cCCCcccCCccEEEEeeecCCCceEEEEEEEEeeccc-ccce
Q 039590 106 PFDGIFCIH-GPTNDRLILCNL--ETKESRTLPKRRV-VFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKR-QEIY 180 (379)
Q Consensus 106 s~~GLl~~~-~~~~~~~~V~NP--~T~~~~~LP~~~~-~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~-~~~~ 180 (379)
..++-|.+. +.....+++.++ .+++|..+|+++. .+... .....+ + +|..+........ ....
T Consensus 15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~-------~~~~~~---~--~iYv~GG~~~~~~~~~~~ 82 (346)
T TIGR03547 15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQA-------VAAAID---G--KLYVFGGIGKANSEGSPQ 82 (346)
T ss_pred EECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccc-------eEEEEC---C--EEEEEeCCCCCCCCCcce
Confidence 445555554 333345778874 6788999998763 23211 111111 1 4444443211100 0001
Q ss_pred eeeEEEEEEcCCCcccccccccCCcceeeeccccE-EECceEeeEeecCCC-----------------------------
Q 039590 181 EFAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSL-YVDGVCYWLSRFRNN----------------------------- 230 (379)
Q Consensus 181 ~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~----------------------------- 230 (379)
...+++.|+..+++|+.++. .++.......++ .++|.||.+.+....
T Consensus 83 ~~~~v~~Yd~~~~~W~~~~~---~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (346)
T TIGR03547 83 VFDDVYRYDPKKNSWQKLDT---RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQ 159 (346)
T ss_pred ecccEEEEECCCCEEecCCC---CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCC
Confidence 12345599999999999871 121212223334 689999999875310
Q ss_pred ------CccEEEEEECCCceEEEec-CCCCCCCCCcEEEEECCeEEEEEEcCC--CCEEEEEEEc--C--CeEEEEEEEC
Q 039590 231 ------DHAVILSFHLGNDVFEEVQ-EPYIPQSEPTIIGVYNHSLCVLLSHNI--ENYYDIWVMK--D--KCWIKQLSVG 297 (379)
Q Consensus 231 ------~~~~i~~fD~~~e~~~~i~-~P~~~~~~~~~l~~~~G~L~l~~~~~~--~~~i~iW~l~--~--~~W~~~~~i~ 297 (379)
....+.+||+.+++|+.+. +|... .....++..+|+|++++.... ....++|..+ . ..|+++..++
T Consensus 160 ~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~ 238 (346)
T TIGR03547 160 PPEDYFWNKNVLSYDPSTNQWRNLGENPFLG-TAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLP 238 (346)
T ss_pred ChhHcCccceEEEEECCCCceeECccCCCCc-CCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCC
Confidence 0157999999999999985 34322 233467789999999987631 1234455443 2 6999877664
Q ss_pred CCCC-c----ccceEEeeCCeEEEEEeC-----------------------CEEEEEeCCCCcEEEeEEeec-cce-e-E
Q 039590 298 PFVG-V----QRPLGFWKKGAFFVVSTS-----------------------GHLLLYDPNTQEMRDLGVTCF-DVS-V-H 346 (379)
Q Consensus 298 ~~~~-~----~~~~~~~~~~~il~~~~~-----------------------~~l~~yd~~t~~~~~v~~~~~-~~~-~-~ 346 (379)
.... . .....+.-++.|+++.+. ..+-+||+++++|+.+.--.. ... . .
T Consensus 239 ~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~~ 318 (346)
T TIGR03547 239 PPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGVSV 318 (346)
T ss_pred CCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeEEE
Confidence 2210 0 111123346788877642 146689999999998773111 111 2 4
Q ss_pred EEeeeeeecCCCC
Q 039590 347 MYKESLIRLKGGD 359 (379)
Q Consensus 347 ~y~~sl~~~~~~~ 359 (379)
.....|.-+++..
T Consensus 319 ~~~~~iyv~GG~~ 331 (346)
T TIGR03547 319 SWNNGVLLIGGEN 331 (346)
T ss_pred EcCCEEEEEeccC
Confidence 5666666666643
No 15
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.85 E-value=8.5e-10 Score=70.69 Aligned_cols=40 Identities=30% Similarity=0.747 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHhcCCcchhhhheeccccccccccChhhHh
Q 039590 7 NFPEDVMIEVLSRLSVKSLLRFKCVCREWCSLFENPSFIS 46 (379)
Q Consensus 7 ~LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~s~~F~~ 46 (379)
.||+|++.+||.+||++++.++++|||+|++++.++.+-+
T Consensus 3 ~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 3 SLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 6999999999999999999999999999999999885544
No 16
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.82 E-value=1.8e-06 Score=81.51 Aligned_cols=240 Identities=14% Similarity=0.179 Sum_probs=135.7
Q ss_pred cceecceEEEe-cCCCCeEEEEecC--CCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEee-cccccc
Q 039590 104 GGPFDGIFCIH-GPTNDRLILCNLE--TKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWN-EKRQEI 179 (379)
Q Consensus 104 ~~s~~GLl~~~-~~~~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~-~~~~~~ 179 (379)
.+..++-|.+. +.....+++.++. +++|..+|+++...... ...+. .+ + ++..+..... ......
T Consensus 34 ~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~----~~~v~--~~---~--~IYV~GG~~~~~~~~~~ 102 (376)
T PRK14131 34 GAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQ----AVAAF--ID---G--KLYVFGGIGKTNSEGSP 102 (376)
T ss_pred EEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCccc----ceEEE--EC---C--EEEEEcCCCCCCCCCce
Confidence 44566666664 3333457787775 57899998765322111 01111 11 2 2333332211 000001
Q ss_pred eeeeEEEEEEcCCCcccccccccCCcceee-eccccEE-ECceEeeEeecCCC---------------------------
Q 039590 180 YEFAHVAMYNLRTNSWRDLKSFKSDHYVMS-FWSGSLY-VDGVCYWLSRFRNN--------------------------- 230 (379)
Q Consensus 180 ~~~~~~~vyss~~~~W~~~~~~~~~~~~~~-~~~~~v~-~~G~lywl~~~~~~--------------------------- 230 (379)
....++++|+..+++|+.++. ..+.. ..+.++. .+|.||.+++....
T Consensus 103 ~~~~~v~~YD~~~n~W~~~~~----~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~ 178 (376)
T PRK14131 103 QVFDDVYKYDPKTNSWQKLDT----RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYF 178 (376)
T ss_pred eEcccEEEEeCCCCEEEeCCC----CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHh
Confidence 122356699999999999872 11222 2233444 79999999875310
Q ss_pred --------CccEEEEEECCCceEEEec-CCCCCCCCCcEEEEECCeEEEEEEcC--CCCEEEEEEEc--C--CeEEEEEE
Q 039590 231 --------DHAVILSFHLGNDVFEEVQ-EPYIPQSEPTIIGVYNHSLCVLLSHN--IENYYDIWVMK--D--KCWIKQLS 295 (379)
Q Consensus 231 --------~~~~i~~fD~~~e~~~~i~-~P~~~~~~~~~l~~~~G~L~l~~~~~--~~~~i~iW~l~--~--~~W~~~~~ 295 (379)
....+.+||+.+++|..+. +|... .....++..+++|++++... .....++|..+ . ..|+++..
T Consensus 179 ~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~-~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 257 (376)
T PRK14131 179 DKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLG-TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD 257 (376)
T ss_pred cCChhhcCcCceEEEEECCCCeeeECCcCCCCC-CCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC
Confidence 1246999999999999875 44322 22346778899999999753 12345566443 2 79998877
Q ss_pred ECCCCC------cccceEEeeCCeEEEEEeCC-----------------------EEEEEeCCCCcEEEeEEeecc--ce
Q 039590 296 VGPFVG------VQRPLGFWKKGAFFVVSTSG-----------------------HLLLYDPNTQEMRDLGVTCFD--VS 344 (379)
Q Consensus 296 i~~~~~------~~~~~~~~~~~~il~~~~~~-----------------------~l~~yd~~t~~~~~v~~~~~~--~~ 344 (379)
++.... ........-++.|+++.+.. .+-.||+++++|+.+.-.... ..
T Consensus 258 ~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~ 337 (376)
T PRK14131 258 LPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYG 337 (376)
T ss_pred CCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccce
Confidence 653221 01111233467787775421 234799999999987632211 12
Q ss_pred e-EEEeeeeeecCCCC
Q 039590 345 V-HMYKESLIRLKGGD 359 (379)
Q Consensus 345 ~-~~y~~sl~~~~~~~ 359 (379)
. ......|.-+++..
T Consensus 338 ~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 338 VSVSWNNGVLLIGGET 353 (376)
T ss_pred EEEEeCCEEEEEcCCC
Confidence 2 55666677777643
No 17
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.77 E-value=2.2e-09 Score=66.68 Aligned_cols=39 Identities=38% Similarity=0.751 Sum_probs=37.1
Q ss_pred CCHHHHHHHHhcCCcchhhhheeccccccccccChhhHh
Q 039590 8 FPEDVMIEVLSRLSVKSLLRFKCVCREWCSLFENPSFIS 46 (379)
Q Consensus 8 LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~s~~F~~ 46 (379)
||+|++.+||.+|+.+++.++++|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988764
No 18
>PLN02153 epithiospecifier protein
Probab=98.74 E-value=1.8e-06 Score=80.53 Aligned_cols=172 Identities=11% Similarity=0.134 Sum_probs=105.7
Q ss_pred eEEEEEEcCCCcccccccccCCccee-eeccccEEECceEeeEeecCC-CCccEEEEEECCCceEEEecC------CCCC
Q 039590 183 AHVAMYNLRTNSWRDLKSFKSDHYVM-SFWSGSLYVDGVCYWLSRFRN-NDHAVILSFHLGNDVFEEVQE------PYIP 254 (379)
Q Consensus 183 ~~~~vyss~~~~W~~~~~~~~~~~~~-~~~~~~v~~~G~lywl~~~~~-~~~~~i~~fD~~~e~~~~i~~------P~~~ 254 (379)
.++++|+..+++|+.+..... .+.. ......+.+++.||.+.+... .....+.+||+.+.+|+.++- |...
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~-~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R 128 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGD-VPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR 128 (341)
T ss_pred CcEEEEECCCCEEEEcCccCC-CCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc
Confidence 356699999999998772211 1111 113456888999999987542 122468999999999998753 2221
Q ss_pred CCCCcEEEEECCeEEEEEEcCCC-------CEEEEEEEcC--CeEEEEEEEC--CCCCcccceEEeeCCeEEEEEe----
Q 039590 255 QSEPTIIGVYNHSLCVLLSHNIE-------NYYDIWVMKD--KCWIKQLSVG--PFVGVQRPLGFWKKGAFFVVST---- 319 (379)
Q Consensus 255 ~~~~~~l~~~~G~L~l~~~~~~~-------~~i~iW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~---- 319 (379)
.....+..+++|++++..... ..-++|+.+- ..|..+.... +.+.....+.. -+++|+++.+
T Consensus 129 --~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~ 205 (341)
T PLN02153 129 --TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATS 205 (341)
T ss_pred --eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccc
Confidence 223667889999999876311 1124555554 8999765432 11111222233 3567766532
Q ss_pred ----------CCEEEEEeCCCCcEEEeEEeec----ccee--EEEeeeeeecCCC
Q 039590 320 ----------SGHLLLYDPNTQEMRDLGVTCF----DVSV--HMYKESLIRLKGG 358 (379)
Q Consensus 320 ----------~~~l~~yd~~t~~~~~v~~~~~----~~~~--~~y~~sl~~~~~~ 358 (379)
...+..||+++++|+++...+. .... ..+...|.-+++.
T Consensus 206 ~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~ 260 (341)
T PLN02153 206 ILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGE 260 (341)
T ss_pred cccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcc
Confidence 2468999999999999874331 1112 5556666666663
No 19
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.74 E-value=4.2e-09 Score=67.86 Aligned_cols=42 Identities=36% Similarity=0.708 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHhcCCcchhhhheeccccccccccChhhHhhh
Q 039590 7 NFPEDVMIEVLSRLSVKSLLRFKCVCREWCSLFENPSFISKH 48 (379)
Q Consensus 7 ~LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~~ 48 (379)
.||+|++.+||.+|+.+++.+++.|||+|++++.++.+...+
T Consensus 5 ~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 5 DLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 599999999999999999999999999999999999887654
No 20
>PHA03098 kelch-like protein; Provisional
Probab=98.69 E-value=1.7e-06 Score=85.83 Aligned_cols=214 Identities=14% Similarity=0.189 Sum_probs=127.8
Q ss_pred EEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCccccccc
Q 039590 121 LILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDLKS 200 (379)
Q Consensus 121 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~~ 200 (379)
+.-+|+.+++|..++..+.... . .+... .-+++.+++.... ......+..|+..+++|..++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~-----~~~lyv~GG~~~~----~~~~~~v~~yd~~~~~W~~~~- 327 (534)
T PHA03098 266 YITNYSPLSEINTIIDIHYVYC-F-------GSVVL-----NNVIYFIGGMNKN----NLSVNSVVSYDTKTKSWNKVP- 327 (534)
T ss_pred eeecchhhhhcccccCcccccc-c-------eEEEE-----CCEEEEECCCcCC----CCeeccEEEEeCCCCeeeECC-
Confidence 4456888999988875543211 0 11111 1234444322111 112234569999999999888
Q ss_pred ccCCcceeeeccccEEECceEeeEeecCC-CCccEEEEEECCCceEEEec-CCCCCCCCCcEEEEECCeEEEEEEcCCC-
Q 039590 201 FKSDHYVMSFWSGSLYVDGVCYWLSRFRN-NDHAVILSFHLGNDVFEEVQ-EPYIPQSEPTIIGVYNHSLCVLLSHNIE- 277 (379)
Q Consensus 201 ~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~i~~fD~~~e~~~~i~-~P~~~~~~~~~l~~~~G~L~l~~~~~~~- 277 (379)
+++........+.++|.+|.+++... .....+..||+.+.+|+.++ +|... .....+..+|+|+++++....
T Consensus 328 ---~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r--~~~~~~~~~~~iYv~GG~~~~~ 402 (534)
T PHA03098 328 ---ELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR--YNPCVVNVNNLIYVIGGISKND 402 (534)
T ss_pred ---CCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC--ccceEEEECCEEEEECCcCCCC
Confidence 34323335667889999999987642 22346889999999999874 44332 334667899999999885211
Q ss_pred ---CEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEEEEeC---------CEEEEEeCCCCcEEEeEEeecc--c
Q 039590 278 ---NYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTS---------GHLLLYDPNTQEMRDLGVTCFD--V 343 (379)
Q Consensus 278 ---~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~---------~~l~~yd~~t~~~~~v~~~~~~--~ 343 (379)
..+..+-.+..+|.+...++.. .... -.+..++.|+++.+. ..+..||+++++|+.+.-.... .
T Consensus 403 ~~~~~v~~yd~~t~~W~~~~~~p~~-r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~ 480 (534)
T PHA03098 403 ELLKTVECFSLNTNKWSKGSPLPIS-HYGG-CAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN 480 (534)
T ss_pred cccceEEEEeCCCCeeeecCCCCcc-ccCc-eEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccccc
Confidence 2333343334899986544321 1112 223346778777541 2489999999999998732111 1
Q ss_pred ee-EEEeeeeeecCCCC
Q 039590 344 SV-HMYKESLIRLKGGD 359 (379)
Q Consensus 344 ~~-~~y~~sl~~~~~~~ 359 (379)
.. ..+...+.-+++..
T Consensus 481 ~~~~~~~~~iyv~GG~~ 497 (534)
T PHA03098 481 ASLCIFNNKIYVVGGDK 497 (534)
T ss_pred ceEEEECCEEEEEcCCc
Confidence 22 55566666666644
No 21
>PLN02193 nitrile-specifier protein
Probab=98.68 E-value=7.2e-06 Score=79.74 Aligned_cols=174 Identities=12% Similarity=0.141 Sum_probs=106.1
Q ss_pred eEEEEEEcCCCcccccccccCCccee-eeccccEEECceEeeEeecCC-CCccEEEEEECCCceEEEecCC-CCC-CCCC
Q 039590 183 AHVAMYNLRTNSWRDLKSFKSDHYVM-SFWSGSLYVDGVCYWLSRFRN-NDHAVILSFHLGNDVFEEVQEP-YIP-QSEP 258 (379)
Q Consensus 183 ~~~~vyss~~~~W~~~~~~~~~~~~~-~~~~~~v~~~G~lywl~~~~~-~~~~~i~~fD~~~e~~~~i~~P-~~~-~~~~ 258 (379)
.++++|+.++++|..++.. .+.|+. +.....+.+++.||.+.+... .....+.+||+.+++|+.+... ... ....
T Consensus 193 ~~v~~yD~~~~~W~~~~~~-g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~ 271 (470)
T PLN02193 193 KHLYVFDLETRTWSISPAT-GDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSF 271 (470)
T ss_pred CcEEEEECCCCEEEeCCCC-CCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccc
Confidence 3466999999999976521 012221 224456889999999887542 1234689999999999987532 111 1122
Q ss_pred cEEEEECCeEEEEEEcCCC-CEEEEEEEcC--CeEEEEEEECC--CCCcccceEEeeCCeEEEEEe-----CCEEEEEeC
Q 039590 259 TIIGVYNHSLCVLLSHNIE-NYYDIWVMKD--KCWIKQLSVGP--FVGVQRPLGFWKKGAFFVVST-----SGHLLLYDP 328 (379)
Q Consensus 259 ~~l~~~~G~L~l~~~~~~~-~~i~iW~l~~--~~W~~~~~i~~--~~~~~~~~~~~~~~~il~~~~-----~~~l~~yd~ 328 (379)
..++..+++|++++..... ..-++|..+- .+|+.+..... .......+.+ -+++++++.. ...+..||+
T Consensus 272 h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~g~~~~dv~~yD~ 350 (470)
T PLN02193 272 HSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFNGCEVDDVHYYDP 350 (470)
T ss_pred eEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCcEEEEECCCCCccCceEEEEC
Confidence 3566789999999876321 2224555543 89987643221 1111222223 3567777654 257999999
Q ss_pred CCCcEEEeEEeec----cce-e-EEEeeeeeecCCC
Q 039590 329 NTQEMRDLGVTCF----DVS-V-HMYKESLIRLKGG 358 (379)
Q Consensus 329 ~t~~~~~v~~~~~----~~~-~-~~y~~sl~~~~~~ 358 (379)
++++|+++...+. +.. . ..+...|.-+++.
T Consensus 351 ~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~ 386 (470)
T PLN02193 351 VQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGE 386 (470)
T ss_pred CCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCc
Confidence 9999999874321 112 2 5556666666664
No 22
>PHA02790 Kelch-like protein; Provisional
Probab=98.53 E-value=4.2e-06 Score=81.61 Aligned_cols=164 Identities=10% Similarity=0.096 Sum_probs=109.9
Q ss_pred EEEEEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecCCCCccEEEEEECCCceEEEec-CCCCCCCCCcEEE
Q 039590 184 HVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQ-EPYIPQSEPTIIG 262 (379)
Q Consensus 184 ~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~-~P~~~~~~~~~l~ 262 (379)
.+..|+..+++|..++ +++.......++.++|.+|.+++.. ....+..||+.+++|..++ +|... .....+
T Consensus 288 ~v~~Ydp~~~~W~~~~----~m~~~r~~~~~v~~~~~iYviGG~~--~~~sve~ydp~~n~W~~~~~l~~~r--~~~~~~ 359 (480)
T PHA02790 288 NAIAVNYISNNWIPIP----PMNSPRLYASGVPANNKLYVVGGLP--NPTSVERWFHGDAAWVNMPSLLKPR--CNPAVA 359 (480)
T ss_pred eEEEEECCCCEEEECC----CCCchhhcceEEEECCEEEEECCcC--CCCceEEEECCCCeEEECCCCCCCC--cccEEE
Confidence 3448999999999998 3332222455688999999999864 2246889999999998874 34322 344788
Q ss_pred EECCeEEEEEEcCC-CCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEEEEeCCEEEEEeCCCCcEEEeEE-ee
Q 039590 263 VYNHSLCVLLSHNI-ENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRDLGV-TC 340 (379)
Q Consensus 263 ~~~G~L~l~~~~~~-~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~~v~~-~~ 340 (379)
+.+|+|+++++... ...++.+-.+.+.|+....++.. . .....+.-+|.|++.. +..-.||+++++|+.+.- ..
T Consensus 360 ~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~-r-~~~~~~~~~~~IYv~G--G~~e~ydp~~~~W~~~~~m~~ 435 (480)
T PHA02790 360 SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP-H-YKSCALVFGRRLFLVG--RNAEFYCESSNTWTLIDDPIY 435 (480)
T ss_pred EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc-c-ccceEEEECCEEEEEC--CceEEecCCCCcEeEcCCCCC
Confidence 99999999988642 24466665555899976544321 1 1122234467888875 346789999999998873 21
Q ss_pred -cccee-EEEeeeeeecCCCC
Q 039590 341 -FDVSV-HMYKESLIRLKGGD 359 (379)
Q Consensus 341 -~~~~~-~~y~~sl~~~~~~~ 359 (379)
..... ..+...+--+++.+
T Consensus 436 ~r~~~~~~v~~~~IYviGG~~ 456 (480)
T PHA02790 436 PRDNPELIIVDNKLLLIGGFY 456 (480)
T ss_pred CccccEEEEECCEEEEECCcC
Confidence 11233 66666777777654
No 23
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.53 E-value=1.4e-05 Score=73.98 Aligned_cols=137 Identities=15% Similarity=0.115 Sum_probs=82.7
Q ss_pred CeEEEEecCCCce----ecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCc
Q 039590 119 DRLILCNLETKES----RTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNS 194 (379)
Q Consensus 119 ~~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~ 194 (379)
+.++.+|+.+++| ..+|+++..+..+ .+..++ =++..+...... .....+++|+.++++
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~-------~~~~~~-----~~iYv~GG~~~~-----~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFENG-------SACYKD-----GTLYVGGGNRNG-----KPSNKSYLFNLETQE 150 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccCc-------eEEEEC-----CEEEEEeCcCCC-----ccCceEEEEcCCCCC
Confidence 3688899999987 6777776544322 111222 144444332111 112345599999999
Q ss_pred ccccccccCCcceeeeccccEEECceEeeEeecCCCCccEEEEEECCCceEEEecCCC-C--C-CCC-CcEEEEECCeEE
Q 039590 195 WRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPY-I--P-QSE-PTIIGVYNHSLC 269 (379)
Q Consensus 195 W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~-~--~-~~~-~~~l~~~~G~L~ 269 (379)
|..++.+|. ..+.....+.++|.||.+.+........+.+||+.+++|+.++... . . ... ...++..+|+|+
T Consensus 151 W~~~~~~p~---~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iy 227 (323)
T TIGR03548 151 WFELPDFPG---EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLL 227 (323)
T ss_pred eeECCCCCC---CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEE
Confidence 999883321 1222445578999999998754222234789999999999875321 1 1 111 123455689999
Q ss_pred EEEEcC
Q 039590 270 VLLSHN 275 (379)
Q Consensus 270 l~~~~~ 275 (379)
+++...
T Consensus 228 v~GG~~ 233 (323)
T TIGR03548 228 CIGGFN 233 (323)
T ss_pred EECCcC
Confidence 998763
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.39 E-value=1.2e-05 Score=73.02 Aligned_cols=211 Identities=12% Similarity=0.137 Sum_probs=125.4
Q ss_pred CeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeec-ccccceeeeEEEEEEcCCCcccc
Q 039590 119 DRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNE-KRQEIYEFAHVAMYNLRTNSWRD 197 (379)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~-~~~~~~~~~~~~vyss~~~~W~~ 197 (379)
+.+|++|.-+.+|+.+-.+..+.++. .+.....++. + +..+...... .......--.+++|++.+++|..
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRs------shq~va~~s~--~-l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweq 168 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRS------SHQAVAVPSN--I-LWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQ 168 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCc------cceeEEeccC--e-EEEeccccCCcchhhhhhhhheeeeeeccchhee
Confidence 46899999999999985444333322 2333333432 1 1112111111 10000111235599999999999
Q ss_pred cccccCCcceeeeccccEEECceEeeEeecCCCC-----ccEEEEEECCCceEEEecCCCCC--CCCCcEEEEE-CCeEE
Q 039590 198 LKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNND-----HAVILSFHLGNDVFEEVQEPYIP--QSEPTIIGVY-NHSLC 269 (379)
Q Consensus 198 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-----~~~i~~fD~~~e~~~~i~~P~~~--~~~~~~l~~~-~G~L~ 269 (379)
+. ++ ..|..+..++.|.....|.-.++..... ..-+.+||+.+=+|+.+..+-.. ...++++.+. .|.+.
T Consensus 169 l~-~~-g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~ 246 (521)
T KOG1230|consen 169 LE-FG-GGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIV 246 (521)
T ss_pred ec-cC-CCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEE
Confidence 87 11 1222222344455544444443332211 13589999999999998764322 2345566666 89999
Q ss_pred EEEEcC----------CCCEEEEEEEcC-------CeEEEEEEEC--CCCCcccceEEeeCCeEEEEEe-----------
Q 039590 270 VLLSHN----------IENYYDIWVMKD-------KCWIKQLSVG--PFVGVQRPLGFWKKGAFFVVST----------- 319 (379)
Q Consensus 270 l~~~~~----------~~~~i~iW~l~~-------~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~----------- 319 (379)
|.+.+. ...+-+.|.|+. ..|.++..+. |.+.....++++.++.-+++.+
T Consensus 247 vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl 326 (521)
T KOG1230|consen 247 VYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESL 326 (521)
T ss_pred EEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhh
Confidence 988763 344668899986 5788887665 4444445566777665555442
Q ss_pred ----CCEEEEEeCCCCcEEEeEEee
Q 039590 320 ----SGHLLLYDPNTQEMRDLGVTC 340 (379)
Q Consensus 320 ----~~~l~~yd~~t~~~~~v~~~~ 340 (379)
-+.|+.||+..++|.+-++++
T Consensus 327 ~g~F~NDLy~fdlt~nrW~~~qlq~ 351 (521)
T KOG1230|consen 327 SGEFFNDLYFFDLTRNRWSEGQLQG 351 (521)
T ss_pred hhhhhhhhhheecccchhhHhhhcc
Confidence 256999999999999877655
No 25
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.36 E-value=8.2e-05 Score=70.34 Aligned_cols=145 Identities=14% Similarity=0.129 Sum_probs=89.8
Q ss_pred EEEEEEcCCCcccccccccCCcce-eeeccccEEECceEeeEeecCC----CCccEEEEEECCCceEEEec-CCCCCCC-
Q 039590 184 HVAMYNLRTNSWRDLKSFKSDHYV-MSFWSGSLYVDGVCYWLSRFRN----NDHAVILSFHLGNDVFEEVQ-EPYIPQS- 256 (379)
Q Consensus 184 ~~~vyss~~~~W~~~~~~~~~~~~-~~~~~~~v~~~G~lywl~~~~~----~~~~~i~~fD~~~e~~~~i~-~P~~~~~- 256 (379)
++++|+..++.|+.++ .++. .......+.++|.||.+++... ........||+++.+|..+. +|.....
T Consensus 190 ~v~~YD~~t~~W~~~~----~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~ 265 (376)
T PRK14131 190 EVLSYDPSTNQWKNAG----ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGS 265 (376)
T ss_pred eEEEEECCCCeeeECC----cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCC
Confidence 4569999999999988 3332 2224556778999999987531 12234556788899998764 4543211
Q ss_pred -----CCcEEEEECCeEEEEEEcCCC--------------------CEEEEEEEcCCeEEEEEEECCCCCcccceEEeeC
Q 039590 257 -----EPTIIGVYNHSLCVLLSHNIE--------------------NYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKK 311 (379)
Q Consensus 257 -----~~~~l~~~~G~L~l~~~~~~~--------------------~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~ 311 (379)
.....+..+|+|++++..... ...+++-.+...|++...++. +. .....+.-+
T Consensus 266 ~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~-~r-~~~~av~~~ 343 (376)
T PRK14131 266 SQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQ-GL-AYGVSVSWN 343 (376)
T ss_pred cCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCC-Cc-cceEEEEeC
Confidence 111245789999999875311 123455555588987765442 21 122234456
Q ss_pred CeEEEEEeC-------CEEEEEeCCCCcEE
Q 039590 312 GAFFVVSTS-------GHLLLYDPNTQEMR 334 (379)
Q Consensus 312 ~~il~~~~~-------~~l~~yd~~t~~~~ 334 (379)
++||++.+. ..+..|+++++++.
T Consensus 344 ~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 344 NGVLLIGGETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred CEEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence 788888652 26777777776654
No 26
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.15 E-value=9.7e-05 Score=69.06 Aligned_cols=148 Identities=9% Similarity=0.023 Sum_probs=91.5
Q ss_pred EEEEEc--CCCcccccccccCCcc-eeeeccccEEECceEeeEeecCCC-------CccEEEEEECCCceEEEecCCCCC
Q 039590 185 VAMYNL--RTNSWRDLKSFKSDHY-VMSFWSGSLYVDGVCYWLSRFRNN-------DHAVILSFHLGNDVFEEVQEPYIP 254 (379)
Q Consensus 185 ~~vyss--~~~~W~~~~~~~~~~~-~~~~~~~~v~~~G~lywl~~~~~~-------~~~~i~~fD~~~e~~~~i~~P~~~ 254 (379)
+++|++ .+++|+.++ +++ ..+.....+.++|.||.+.+.... ....+.+||+.+++|+.+..|...
T Consensus 31 ~~~~d~~~~~~~W~~l~----~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~ 106 (346)
T TIGR03547 31 WYKLDLKKPSKGWQKIA----DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPV 106 (346)
T ss_pred eEEEECCCCCCCceECC----CCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCC
Confidence 448886 568999988 332 123345678899999999986421 124689999999999998633222
Q ss_pred CCCCcEEE-EECCeEEEEEEcCCC-----------------------------------CEEEEEEEcC--CeEEEEEEE
Q 039590 255 QSEPTIIG-VYNHSLCVLLSHNIE-----------------------------------NYYDIWVMKD--KCWIKQLSV 296 (379)
Q Consensus 255 ~~~~~~l~-~~~G~L~l~~~~~~~-----------------------------------~~i~iW~l~~--~~W~~~~~i 296 (379)
.......+ ..+|+|++++..... ..=.+|..+- .+|+.+..+
T Consensus 107 ~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~ 186 (346)
T TIGR03547 107 GLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGEN 186 (346)
T ss_pred cccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccC
Confidence 22222233 689999999875311 0124555554 899988665
Q ss_pred CCCCCcccceEEeeCCeEEEEEeC-------CEEEEE--eCCCCcEEEeE
Q 039590 297 GPFVGVQRPLGFWKKGAFFVVSTS-------GHLLLY--DPNTQEMRDLG 337 (379)
Q Consensus 297 ~~~~~~~~~~~~~~~~~il~~~~~-------~~l~~y--d~~t~~~~~v~ 337 (379)
+..+. ...-.+.-+++|+++.+. ..+..| |+++++|+++.
T Consensus 187 p~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~ 235 (346)
T TIGR03547 187 PFLGT-AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLP 235 (346)
T ss_pred CCCcC-CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecC
Confidence 53222 122223346788887542 224445 45777998776
No 27
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.13 E-value=2.4e-05 Score=67.25 Aligned_cols=185 Identities=14% Similarity=0.174 Sum_probs=110.6
Q ss_pred eEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCcccccc
Q 039590 120 RLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDLK 199 (379)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 199 (379)
.++-++|-|.+|.+.-.....+ +.-+..+++.+| +...|+.-. .+ .......++++++..|-.||.+.
T Consensus 106 ~Ly~fDp~t~~W~~p~v~G~vP--gaRDGHsAcV~g-----n~MyiFGGy---e~--~a~~FS~d~h~ld~~TmtWr~~~ 173 (392)
T KOG4693|consen 106 LLYEFDPETNVWKKPEVEGFVP--GARDGHSACVWG-----NQMYIFGGY---EE--DAQRFSQDTHVLDFATMTWREMH 173 (392)
T ss_pred eeeeeccccccccccceeeecC--CccCCceeeEEC-----cEEEEecCh---HH--HHHhhhccceeEeccceeeeehh
Confidence 5788899999998732111100 000001233333 222222221 11 12233456669999999999987
Q ss_pred cccCCcceeeeccccEEECceEeeEeecCC----------CCccEEEEEECCCceEEEec----CCCCCCCCCcEEEEEC
Q 039590 200 SFKSDHYVMSFWSGSLYVDGVCYWLSRFRN----------NDHAVILSFHLGNDVFEEVQ----EPYIPQSEPTIIGVYN 265 (379)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~----------~~~~~i~~fD~~~e~~~~i~----~P~~~~~~~~~l~~~~ 265 (379)
.+. +.+.++-.+.++.++|.+|-..++.. .-...|++||+.++.|...+ .|.... .-...+.+
T Consensus 174 Tkg-~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRR--SHS~fvYn 250 (392)
T KOG4693|consen 174 TKG-DPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRR--SHSTFVYN 250 (392)
T ss_pred ccC-CCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccc--ccceEEEc
Confidence 332 22233337888899999999988763 11357999999999997653 232221 12556899
Q ss_pred CeEEEEEEcC---CCCEEEEEEEcC--CeEEEEEEECCCCCc-ccceEEeeCCeEEEEEe
Q 039590 266 HSLCVLLSHN---IENYYDIWVMKD--KCWIKQLSVGPFVGV-QRPLGFWKKGAFFVVST 319 (379)
Q Consensus 266 G~L~l~~~~~---~~~~i~iW~l~~--~~W~~~~~i~~~~~~-~~~~~~~~~~~il~~~~ 319 (379)
|++++++... +...-++|..+. ..|.++..-...+.- .+-.++..+++++++.+
T Consensus 251 g~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGG 310 (392)
T KOG4693|consen 251 GKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGG 310 (392)
T ss_pred ceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecC
Confidence 9999998874 233457898887 789987655433322 23334455677777754
No 28
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.81 E-value=0.00039 Score=59.94 Aligned_cols=155 Identities=11% Similarity=0.106 Sum_probs=98.0
Q ss_pred EEEEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecCC---CCccEEEEEECCCceEEEecC---CCCCCCCC
Q 039590 185 VAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRN---NDHAVILSFHLGNDVFEEVQE---PYIPQSEP 258 (379)
Q Consensus 185 ~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~---~~~~~i~~fD~~~e~~~~i~~---P~~~~~~~ 258 (379)
++-|+.+++.|+... +.--.|+.+-.+++.+.+..+|-..+... ....-+.+||+.+.+|+.+.- |+.-..+.
T Consensus 107 Ly~fDp~t~~W~~p~-v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH 185 (392)
T KOG4693|consen 107 LYEFDPETNVWKKPE-VEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFH 185 (392)
T ss_pred eeeeccccccccccc-eeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhh
Confidence 348999999998765 00112333346778888999998876543 112468999999999999864 33221121
Q ss_pred cEEEEECCeEEEEEEcC----------CCCEEEEEEEcC--CeEEEEEEECCCCC-cccceEEeeCCeEEEEEe------
Q 039590 259 TIIGVYNHSLCVLLSHN----------IENYYDIWVMKD--KCWIKQLSVGPFVG-VQRPLGFWKKGAFFVVST------ 319 (379)
Q Consensus 259 ~~l~~~~G~L~l~~~~~----------~~~~i~iW~l~~--~~W~~~~~i~~~~~-~~~~~~~~~~~~il~~~~------ 319 (379)
.-.+.+|..++++... +.-.-.|-.|+- +.|.+...-...+. -..--.+.-+|+++++.+
T Consensus 186 -~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln 264 (392)
T KOG4693|consen 186 -TASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLN 264 (392)
T ss_pred -hhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhh
Confidence 3446779999988763 111223444443 78887632222221 112233445788888765
Q ss_pred --CCEEEEEeCCCCcEEEeEEeec
Q 039590 320 --SGHLLLYDPNTQEMRDLGVTCF 341 (379)
Q Consensus 320 --~~~l~~yd~~t~~~~~v~~~~~ 341 (379)
-..++.||++|..|..|...|.
T Consensus 265 ~HfndLy~FdP~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 265 VHFNDLYCFDPKTSMWSVISVRGK 288 (392)
T ss_pred hhhcceeecccccchheeeeccCC
Confidence 2579999999999999997764
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.77 E-value=0.0009 Score=59.70 Aligned_cols=41 Identities=27% Similarity=0.530 Sum_probs=37.7
Q ss_pred CCC----HHHHHHHHhcCCcchhhhheeccccccccccChhhHhh
Q 039590 7 NFP----EDVMIEVLSRLSVKSLLRFKCVCREWCSLFENPSFISK 47 (379)
Q Consensus 7 ~LP----~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~ 47 (379)
.|| +++.+.||+.|...+|+.+..|||+|+++++++-.-++
T Consensus 77 ~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 77 ALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred hcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 589 99999999999999999999999999999999876543
No 30
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.53 E-value=0.006 Score=59.54 Aligned_cols=206 Identities=13% Similarity=0.067 Sum_probs=125.4
Q ss_pred eEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCcccccc
Q 039590 120 RLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDLK 199 (379)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 199 (379)
.++|+|-.+..|............. . .......+ + +++.+..... ......+++.|+..|+.|+...
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r-~-g~~~~~~~------~-~l~lfGG~~~----~~~~~~~l~~~d~~t~~W~~l~ 155 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPR-Y-GHSLSAVG------D-KLYLFGGTDK----KYRNLNELHSLDLSTRTWSLLS 155 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcc-c-ceeEEEEC------C-eEEEEccccC----CCCChhheEeccCCCCcEEEec
Confidence 4999999998888765433222110 0 01112222 1 2222322111 0122457779999999999887
Q ss_pred cccCCcceeeeccccEEECceEeeEeecCCC--CccEEEEEECCCceEEEecCCCCC--CCCCcEEEEECCeEEEEEEcC
Q 039590 200 SFKSDHYVMSFWSGSLYVDGVCYWLSRFRNN--DHAVILSFHLGNDVFEEVQEPYIP--QSEPTIIGVYNHSLCVLLSHN 275 (379)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~--~~~~i~~fD~~~e~~~~i~~P~~~--~~~~~~l~~~~G~L~l~~~~~ 275 (379)
... +.|+....+..+.++..+|...+.... ....+.+||+.+.+|..+...... .......+..+++++++....
T Consensus 156 ~~~-~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~ 234 (482)
T KOG0379|consen 156 PTG-DPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGD 234 (482)
T ss_pred CcC-CCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccc
Confidence 332 234444467778888888887766532 356899999999999988654332 223347788899999998764
Q ss_pred --CCCEEEEEEEcC--CeEEEEEEEC--CCCCcccceEEeeCCeEEEEEe--------CCEEEEEeCCCCcEEEeEEee
Q 039590 276 --IENYYDIWVMKD--KCWIKQLSVG--PFVGVQRPLGFWKKGAFFVVST--------SGHLLLYDPNTQEMRDLGVTC 340 (379)
Q Consensus 276 --~~~~i~iW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~--------~~~l~~yd~~t~~~~~v~~~~ 340 (379)
....=++|.|+- ..|.+..... |.+....... .....++++.. -..++.||.+++.|..+...+
T Consensus 235 ~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~-~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 235 DGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLT-VSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred cCCceecceEeeecccceeeeccccCCCCCCcceeeeE-EECCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 223447898887 7787554333 2333334444 33345555543 235788999999999887543
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=4.7e-05 Score=66.89 Aligned_cols=40 Identities=25% Similarity=0.590 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHhcCCcchhhhheeccccccccccChhhHh
Q 039590 7 NFPEDVMIEVLSRLSVKSLLRFKCVCREWCSLFENPSFIS 46 (379)
Q Consensus 7 ~LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~s~~F~~ 46 (379)
.|||||++.||+.||.|+|.++..|||+|+++.++...-.
T Consensus 100 slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~ 139 (419)
T KOG2120|consen 100 SLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQ 139 (419)
T ss_pred cCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccccee
Confidence 5999999999999999999999999999999998877644
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.26 E-value=0.014 Score=57.09 Aligned_cols=175 Identities=13% Similarity=0.118 Sum_probs=112.5
Q ss_pred EEEEEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecCC--CCccEEEEEECCCceEEEecCCCC-C-CCCCc
Q 039590 184 HVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRN--NDHAVILSFHLGNDVFEEVQEPYI-P-QSEPT 259 (379)
Q Consensus 184 ~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~~i~~fD~~~e~~~~i~~P~~-~-~~~~~ 259 (379)
.+++++.++..|...... ...|.....+..+.++..||..++... .....|.+||+.+.+|..+..-.. . .....
T Consensus 89 dl~~~d~~~~~w~~~~~~-g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~H 167 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAAT-GDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGH 167 (482)
T ss_pred eeEEeecCCccccccccc-CCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccc
Confidence 466999999999876611 122223336777888999999887652 223479999999999998753222 1 12223
Q ss_pred EEEEECCeEEEEEEcCCC--CEEEEEEEcC--CeEEEEEEECCCC--CcccceEEeeCCeEEEEEe-C------CEEEEE
Q 039590 260 IIGVYNHSLCVLLSHNIE--NYYDIWVMKD--KCWIKQLSVGPFV--GVQRPLGFWKKGAFFVVST-S------GHLLLY 326 (379)
Q Consensus 260 ~l~~~~G~L~l~~~~~~~--~~i~iW~l~~--~~W~~~~~i~~~~--~~~~~~~~~~~~~il~~~~-~------~~l~~y 326 (379)
.++..+.+|.+++..... ..-++|+++- ..|.++...+..+ .....+.+.+ ++++++.+ + ..++.+
T Consensus 168 s~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~-~~~~v~gG~~~~~~~l~D~~~l 246 (482)
T KOG0379|consen 168 SATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVG-NKLLVFGGGDDGDVYLNDVHIL 246 (482)
T ss_pred eEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEEC-CeEEEEeccccCCceecceEee
Confidence 677778899999877532 4678899886 7899998877443 3334444443 44444433 2 368999
Q ss_pred eCCCCcEEEeEEeecc----c-ee-EEEeeeeeecCCCCC
Q 039590 327 DPNTQEMRDLGVTCFD----V-SV-HMYKESLIRLKGGDN 360 (379)
Q Consensus 327 d~~t~~~~~v~~~~~~----~-~~-~~y~~sl~~~~~~~~ 360 (379)
|+.+.+|.++...+.. . +. ....+.++-+++...
T Consensus 247 dl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~ 286 (482)
T KOG0379|consen 247 DLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTD 286 (482)
T ss_pred ecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcc
Confidence 9999999966654421 1 12 544445555555433
No 33
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.91 E-value=0.099 Score=48.33 Aligned_cols=145 Identities=15% Similarity=0.220 Sum_probs=88.5
Q ss_pred EEEEEEcCCCcccccccccCCcceeeeccccEEEC-ceEeeEeecCC-------CCccEEEEEECCCceEEEecCCCCCC
Q 039590 184 HVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVD-GVCYWLSRFRN-------NDHAVILSFHLGNDVFEEVQEPYIPQ 255 (379)
Q Consensus 184 ~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~-G~lywl~~~~~-------~~~~~i~~fD~~~e~~~~i~~P~~~~ 255 (379)
++++|+-+++.|+.+.+ | ..|+.+..+.+|.+- |.+|..++... ....-+-.||+.+.+|..+.++...+
T Consensus 99 dLy~Yn~k~~eWkk~~s-p-n~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS 176 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVS-P-NAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPS 176 (521)
T ss_pred eeeEEeccccceeEecc-C-CCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCC
Confidence 45599999999998872 1 222333355565554 65444443331 11234889999999999999876652
Q ss_pred -CCCcEEEEECCeEEEEEEcCCCC-----EEEEEEEcC--CeEEEEEEEC--CCCCcccceEEeeCCeEEEEEe------
Q 039590 256 -SEPTIIGVYNHSLCVLLSHNIEN-----YYDIWVMKD--KCWIKQLSVG--PFVGVQRPLGFWKKGAFFVVST------ 319 (379)
Q Consensus 256 -~~~~~l~~~~G~L~l~~~~~~~~-----~i~iW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~------ 319 (379)
..+-++++.+.+|.+++.....+ .=++|+.+- ..|.++..=. |.+.-..-+.+...|.|++..+
T Consensus 177 ~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~ 256 (521)
T KOG1230|consen 177 PRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRV 256 (521)
T ss_pred CCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhh
Confidence 23348999999999997653111 125566554 8999987522 2222112233344566666543
Q ss_pred ---------CCEEEEEeCCC
Q 039590 320 ---------SGHLLLYDPNT 330 (379)
Q Consensus 320 ---------~~~l~~yd~~t 330 (379)
...++..++++
T Consensus 257 kK~~dKG~~hsDmf~L~p~~ 276 (521)
T KOG1230|consen 257 KKDVDKGTRHSDMFLLKPED 276 (521)
T ss_pred hhhhhcCceeeeeeeecCCc
Confidence 23577888877
No 34
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.01 E-value=0.0024 Score=56.59 Aligned_cols=43 Identities=19% Similarity=0.468 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHhcCC-----cchhhhheeccccccccccChhhHhhhh
Q 039590 7 NFPEDVMIEVLSRLS-----VKSLLRFKCVCREWCSLFENPSFISKHL 49 (379)
Q Consensus 7 ~LP~Dll~~IL~rLP-----~~sl~r~r~VcK~W~~li~s~~F~~~~~ 49 (379)
.||||+|.+||.++= ..+|.++.+|||.|+-...+|+|-+...
T Consensus 109 ~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC 156 (366)
T KOG2997|consen 109 VLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC 156 (366)
T ss_pred hCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence 699999999998765 4999999999999999999999977543
No 35
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.55 E-value=0.51 Score=45.00 Aligned_cols=203 Identities=18% Similarity=0.180 Sum_probs=104.1
Q ss_pred eEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCcc--cc
Q 039590 120 RLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSW--RD 197 (379)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~W--~~ 197 (379)
.+.|+|.+|+||. +|....+.+.+ ..++||.+|. ..-.|+.-+..+ ..+..+ .|.+...+| +.
T Consensus 58 ELHvYNTatnqWf-~PavrGDiPpg----cAA~GfvcdG--trilvFGGMvEY------GkYsNd--LYELQasRWeWkr 122 (830)
T KOG4152|consen 58 ELHVYNTATNQWF-APAVRGDIPPG----CAAFGFVCDG--TRILVFGGMVEY------GKYSND--LYELQASRWEWKR 122 (830)
T ss_pred hhhhhccccceee-cchhcCCCCCc----hhhcceEecC--ceEEEEccEeee------ccccch--HHHhhhhhhhHhh
Confidence 6899999999998 46555544444 2345555553 233333322222 223455 788877654 66
Q ss_pred ccc-ccCC-ccee-eeccccEEECceEeeEeecCC------------CCccEEEEEECCCce--EEEe----cCCCCCCC
Q 039590 198 LKS-FKSD-HYVM-SFWSGSLYVDGVCYWLSRFRN------------NDHAVILSFHLGNDV--FEEV----QEPYIPQS 256 (379)
Q Consensus 198 ~~~-~~~~-~~~~-~~~~~~v~~~G~lywl~~~~~------------~~~~~i~~fD~~~e~--~~~i----~~P~~~~~ 256 (379)
+.. .|.. .+|- +..++-..++.+.|...+-.+ ....+|+-+-.+... |... .+|+..++
T Consensus 123 lkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRES 202 (830)
T KOG4152|consen 123 LKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRES 202 (830)
T ss_pred cCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCccc
Confidence 651 1111 1111 124555667788888766442 111233333333332 4421 24444433
Q ss_pred CCcEEE-EECC---eEEEEEEcCCCCEEEEEEEcC--CeEEEEEE--ECCCCCcccceEEeeCCeEEEEEe---------
Q 039590 257 EPTIIG-VYNH---SLCVLLSHNIENYYDIWVMKD--KCWIKQLS--VGPFVGVQRPLGFWKKGAFFVVST--------- 319 (379)
Q Consensus 257 ~~~~l~-~~~G---~L~l~~~~~~~~~i~iW~l~~--~~W~~~~~--i~~~~~~~~~~~~~~~~~il~~~~--------- 319 (379)
+..-+- +.|. ++.+.+....-..=++|.|+- ..|.+... +.|++.-.+.. ...++++|++.+
T Consensus 203 HTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa-~~IGnKMyvfGGWVPl~~~~~ 281 (830)
T KOG4152|consen 203 HTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSA-TTIGNKMYVFGGWVPLVMDDV 281 (830)
T ss_pred ceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCCCCcccccc-eeecceeEEecceeeeecccc
Confidence 332232 3332 366665543444558999986 78987542 33443211111 111234444321
Q ss_pred -----------CCEEEEEeCCCCcEEEeEE
Q 039590 320 -----------SGHLLLYDPNTQEMRDLGV 338 (379)
Q Consensus 320 -----------~~~l~~yd~~t~~~~~v~~ 338 (379)
...+.++|+.+++|+.+-.
T Consensus 282 ~~~~hekEWkCTssl~clNldt~~W~tl~~ 311 (830)
T KOG4152|consen 282 KVATHEKEWKCTSSLACLNLDTMAWETLLM 311 (830)
T ss_pred ccccccceeeeccceeeeeecchheeeeee
Confidence 2458889999999997764
No 36
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.41 E-value=0.5 Score=44.30 Aligned_cols=153 Identities=15% Similarity=0.218 Sum_probs=84.6
Q ss_pred ccccEEECce-EeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCc---EEEEECCeEEEEEEcCCCCEEEEEEEc
Q 039590 211 WSGSLYVDGV-CYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPT---IIGVYNHSLCVLLSHNIENYYDIWVMK 286 (379)
Q Consensus 211 ~~~~v~~~G~-lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~---~l~~~~G~L~l~~~~~~~~~i~iW~l~ 286 (379)
....++-+|. .-..++.. ..+.+||+.+.+...+..|.......+ .+.- +|...++.+. ...|.+-..+
T Consensus 261 ~~a~f~p~G~~~i~~s~rr----ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~--~G~I~lLhak 333 (514)
T KOG2055|consen 261 QKAEFAPNGHSVIFTSGRR----KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGN--NGHIHLLHAK 333 (514)
T ss_pred ceeeecCCCceEEEecccc----eEEEEeeccccccccccCCCCcccchhheeEecC-CCCeEEEccc--CceEEeehhh
Confidence 3334455676 44444443 689999999999999988876631111 2211 2222222222 2334433333
Q ss_pred CCeEEEEEEECCCCCcccceEEeeCCeEEEE-EeCCEEEEEeCCCCcEEEeEE-eeccceeEEEeeeeeecCCCCCceec
Q 039590 287 DKCWIKQLSVGPFVGVQRPLGFWKKGAFFVV-STSGHLLLYDPNTQEMRDLGV-TCFDVSVHMYKESLIRLKGGDNLLDF 364 (379)
Q Consensus 287 ~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~-~~~~~l~~yd~~t~~~~~v~~-~~~~~~~~~y~~sl~~~~~~~~~~~~ 364 (379)
...|.--++|. +...-+++..+++.++. ..++++++||++++....... +|. .|..||.+-.++. -.|.
T Consensus 334 T~eli~s~Kie---G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~-----v~gts~~~S~ng~-ylA~ 404 (514)
T KOG2055|consen 334 TKELITSFKIE---GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGS-----VHGTSLCISLNGS-YLAT 404 (514)
T ss_pred hhhhhheeeec---cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCc-----cceeeeeecCCCc-eEEe
Confidence 35565555555 22344556667765555 457899999999997655443 332 3444443211111 3444
Q ss_pred cCCceeeeeeeccCC
Q 039590 365 DIPWHVLGVYQTNSC 379 (379)
Q Consensus 365 ~~~~~~~~~~~~~~~ 379 (379)
-+..-|.++|..++|
T Consensus 405 GS~~GiVNIYd~~s~ 419 (514)
T KOG2055|consen 405 GSDSGIVNIYDGNSC 419 (514)
T ss_pred ccCcceEEEeccchh
Confidence 455667778877776
No 37
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=95.30 E-value=1.2 Score=39.29 Aligned_cols=122 Identities=12% Similarity=0.187 Sum_probs=79.6
Q ss_pred eeec-cccEEECceEeeEeecCCCCccEEEEEECCCceEE-EecCCCCCCC----------CCcEEEEECCeEEEEEEcC
Q 039590 208 MSFW-SGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFE-EVQEPYIPQS----------EPTIIGVYNHSLCVLLSHN 275 (379)
Q Consensus 208 ~~~~-~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~-~i~~P~~~~~----------~~~~l~~~~G~L~l~~~~~ 275 (379)
..+. ...|..||.+|.-.... ..|+.||+.++.-. ...+|..... ..+.+++-+..|.++....
T Consensus 67 ~~~~GtG~vVYngslYY~~~~s----~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~ 142 (250)
T PF02191_consen 67 YPWQGTGHVVYNGSLYYNKYNS----RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATE 142 (250)
T ss_pred ceeccCCeEEECCcEEEEecCC----ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecC
Confidence 4443 44488899999987643 68999999999988 7778765411 1237888888898887764
Q ss_pred C-CCEEEEEEEcC------CeEEEEEEECCCCCcccceEEeeCCeEEEEEeC-----CEEEEEeCCCCcEEEeEE
Q 039590 276 I-ENYYDIWVMKD------KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTS-----GHLLLYDPNTQEMRDLGV 338 (379)
Q Consensus 276 ~-~~~i~iW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~-----~~l~~yd~~t~~~~~v~~ 338 (379)
. ...|.|=.|+. ..|.-.+ + .+.... +|--+|-++.+... .-.++||..+++-+.+.+
T Consensus 143 ~~~g~ivvskld~~tL~v~~tw~T~~--~-k~~~~n--aFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i 212 (250)
T PF02191_consen 143 DNNGNIVVSKLDPETLSVEQTWNTSY--P-KRSAGN--AFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSI 212 (250)
T ss_pred CCCCcEEEEeeCcccCceEEEEEecc--C-chhhcc--eeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceee
Confidence 3 33577777775 4554221 1 111111 23345677766542 346889999998887665
No 38
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.33 E-value=3.5 Score=36.51 Aligned_cols=210 Identities=16% Similarity=0.143 Sum_probs=110.5
Q ss_pred eecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccC--------CccEEEEe-eecCCCceEEEEEEEEeeccc
Q 039590 106 PFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSI--------SDTCMGFG-LDIMSNDYKLVMIHSLWNEKR 176 (379)
Q Consensus 106 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~--------~~~~~~~g-~d~~~~~ykVv~~~~~~~~~~ 176 (379)
+-+|-|-+..+....+-=.||.|++....|.....++.+... .....+++ +|+.+.+++=+-+-.
T Consensus 70 apdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~------ 143 (353)
T COG4257 70 APDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPL------ 143 (353)
T ss_pred CCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccc------
Confidence 457777777665544666799999999988776655433100 00000111 222222222222211
Q ss_pred ccceeeeEEEEEEcCCCcccccc-c-------ccCCccee----eecccc--EEECceEeeEeecCCCCccEEEEEECCC
Q 039590 177 QEIYEFAHVAMYNLRTNSWRDLK-S-------FKSDHYVM----SFWSGS--LYVDGVCYWLSRFRNNDHAVILSFHLGN 242 (379)
Q Consensus 177 ~~~~~~~~~~vyss~~~~W~~~~-~-------~~~~~~~~----~~~~~~--v~~~G~lywl~~~~~~~~~~i~~fD~~~ 242 (379)
....-..|.-||+...+-|-+-. + ....+..+ .....+ +.-||.+|+...-+ ..|...|+.+
T Consensus 144 ~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag----naiaridp~~ 219 (353)
T COG4257 144 EHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAG----NAIARIDPFA 219 (353)
T ss_pred ccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccc----cceEEccccc
Confidence 11222345559999988884322 0 00111111 112233 44589999876554 5899999999
Q ss_pred ceEEEecCCCCC-CCCC---------cEEEEE-CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeC
Q 039590 243 DVFEEVQEPYIP-QSEP---------TIIGVY-NHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKK 311 (379)
Q Consensus 243 e~~~~i~~P~~~-~~~~---------~~l~~~-~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~ 311 (379)
..-++++.|... ...+ ..+.+. .|.|+.+.-. ..+|.. +.++-..--..-+.+...
T Consensus 220 ~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs------------~~sW~e-ypLPgs~arpys~rVD~~ 286 (353)
T COG4257 220 GHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPS------------VTSWIE-YPLPGSKARPYSMRVDRH 286 (353)
T ss_pred CCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcc------------ccccee-eeCCCCCCCcceeeeccC
Confidence 988899999774 1111 122211 2233322211 134442 223211111223445555
Q ss_pred CeEEEEE-eCCEEEEEeCCCCcEEEeEE
Q 039590 312 GAFFVVS-TSGHLLLYDPNTQEMRDLGV 338 (379)
Q Consensus 312 ~~il~~~-~~~~l~~yd~~t~~~~~v~~ 338 (379)
|.+.+-. ..+.+.-+|++|.+++.+.+
T Consensus 287 grVW~sea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 287 GRVWLSEADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred CcEEeeccccCceeecCcccceEEEecC
Confidence 6666633 36789999999999999886
No 39
>smart00284 OLF Olfactomedin-like domains.
Probab=94.30 E-value=2.1 Score=37.76 Aligned_cols=119 Identities=17% Similarity=0.210 Sum_probs=76.1
Q ss_pred ccccEEECceEeeEeecCCCCccEEEEEECCCceEEEe-cCCCCC--C--------CCCcEEEEECCeEEEEEEcC-CCC
Q 039590 211 WSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEV-QEPYIP--Q--------SEPTIIGVYNHSLCVLLSHN-IEN 278 (379)
Q Consensus 211 ~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~--~--------~~~~~l~~~~G~L~l~~~~~-~~~ 278 (379)
....|+.||.+|...... ..|+.||+.+++.... .+|... . ...+.|++-+.-|.++.... ...
T Consensus 76 GtG~VVYngslYY~~~~s----~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g 151 (255)
T smart00284 76 GTGVVVYNGSLYFNKFNS----HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG 151 (255)
T ss_pred cccEEEECceEEEEecCC----ccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCC
Confidence 345599999999965443 5799999999998643 466432 0 11247888888898887663 346
Q ss_pred EEEEEEEcC------CeEEEEEEECCCCCcccceEEeeCCeEEEEEe-----CCEEEEEeCCCCcEEEeEE
Q 039590 279 YYDIWVMKD------KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST-----SGHLLLYDPNTQEMRDLGV 338 (379)
Q Consensus 279 ~i~iW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~-----~~~l~~yd~~t~~~~~v~~ 338 (379)
.|.|=.|+. ..|.--+. .+... -+|-.+|.++.... ..-.++||..|++-+.+.+
T Consensus 152 ~ivvSkLnp~tL~ve~tW~T~~~---k~sa~--naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i 217 (255)
T smart00284 152 KIVISKLNPATLTIENTWITTYN---KRSAS--NAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDI 217 (255)
T ss_pred CEEEEeeCcccceEEEEEEcCCC---ccccc--ccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeee
Confidence 677777776 45553221 11111 12333567766652 3457889999988766554
No 40
>PF13964 Kelch_6: Kelch motif
Probab=94.28 E-value=0.13 Score=32.87 Aligned_cols=38 Identities=13% Similarity=0.307 Sum_probs=31.5
Q ss_pred cccEEECceEeeEeecCC--CCccEEEEEECCCceEEEec
Q 039590 212 SGSLYVDGVCYWLSRFRN--NDHAVILSFHLGNDVFEEVQ 249 (379)
Q Consensus 212 ~~~v~~~G~lywl~~~~~--~~~~~i~~fD~~~e~~~~i~ 249 (379)
...+.++|.||.+++... .....+..||+.+++|+.++
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence 456899999999988763 23468999999999999985
No 41
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.23 E-value=3.6 Score=36.14 Aligned_cols=197 Identities=13% Similarity=0.064 Sum_probs=107.2
Q ss_pred ecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEE
Q 039590 107 FDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVA 186 (379)
Q Consensus 107 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~ 186 (379)
.+|-|.+.+-...+++.++|.+++...+..+. ..++.++...+.+.| +. .. ...
T Consensus 10 ~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~------------~~G~~~~~~~g~l~v-~~----~~-------~~~-- 63 (246)
T PF08450_consen 10 RDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG------------PNGMAFDRPDGRLYV-AD----SG-------GIA-- 63 (246)
T ss_dssp TTTEEEEEETTTTEEEEEETTTTEEEEEESSS------------EEEEEEECTTSEEEE-EE----TT-------CEE--
T ss_pred CCCEEEEEEcCCCEEEEEECCCCeEEEEecCC------------CceEEEEccCCEEEE-EE----cC-------ceE--
Confidence 36667777665567999999999876544333 256666633333322 21 00 223
Q ss_pred EEEcCCCcccccccccCCc-ceeeeccccEEECceEeeEeecCC--CCc--cEEEEEECCCceEEEe----cCCCCCCCC
Q 039590 187 MYNLRTNSWRDLKSFKSDH-YVMSFWSGSLYVDGVCYWLSRFRN--NDH--AVILSFHLGNDVFEEV----QEPYIPQSE 257 (379)
Q Consensus 187 vyss~~~~W~~~~~~~~~~-~~~~~~~~~v~~~G~lywl~~~~~--~~~--~~i~~fD~~~e~~~~i----~~P~~~~~~ 257 (379)
+++..++.++.+...+... +......-.+--+|.+|.-..... ... ..|..+|.. .+...+ ..|.
T Consensus 64 ~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pN----- 137 (246)
T PF08450_consen 64 VVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPN----- 137 (246)
T ss_dssp EEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEE-----
T ss_pred EEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccccc-----
Confidence 7788999888776221111 111113334555889877665432 112 579999999 444333 2221
Q ss_pred CcEEE-EECCe-EEEEEEcCCCCEEEEEEEcC--CeEEEEEEE-CCCCC--cccceEEeeCCeEEEEEe-CCEEEEEeCC
Q 039590 258 PTIIG-VYNHS-LCVLLSHNIENYYDIWVMKD--KCWIKQLSV-GPFVG--VQRPLGFWKKGAFFVVST-SGHLLLYDPN 329 (379)
Q Consensus 258 ~~~l~-~~~G~-L~l~~~~~~~~~i~iW~l~~--~~W~~~~~i-~~~~~--~~~~~~~~~~~~il~~~~-~~~l~~yd~~ 329 (379)
-|+ .-+|+ |++.... ...|..+-++. ..+.....+ +.... ...-+++..+|.|++... .+++..||++
T Consensus 138 --Gi~~s~dg~~lyv~ds~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 138 --GIAFSPDGKTLYVADSF--NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp --EEEEETTSSEEEEEETT--TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred --ceEECCcchheeecccc--cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 344 34554 5554433 44444444433 335443333 22222 234466667788877754 7899999999
Q ss_pred CCcEEEeEEe
Q 039590 330 TQEMRDLGVT 339 (379)
Q Consensus 330 t~~~~~v~~~ 339 (379)
.+..+.+.+.
T Consensus 214 G~~~~~i~~p 223 (246)
T PF08450_consen 214 GKLLREIELP 223 (246)
T ss_dssp SCEEEEEE-S
T ss_pred ccEEEEEcCC
Confidence 7767777765
No 42
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.05 E-value=3.9 Score=37.50 Aligned_cols=133 Identities=14% Similarity=0.143 Sum_probs=78.3
Q ss_pred eeeEEEEEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecC-C----CCccEEEEEECCCceEEEe-cCCCCC
Q 039590 181 EFAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFR-N----NDHAVILSFHLGNDVFEEV-QEPYIP 254 (379)
Q Consensus 181 ~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~-~----~~~~~i~~fD~~~e~~~~i-~~P~~~ 254 (379)
+..++.+|+..++.|+... ..|-......++...|-.-++...+ . +......-|.-.+.+|..+ .+|...
T Consensus 194 ~n~ev~sy~p~~n~W~~~G----~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~ 269 (381)
T COG3055 194 FNKEVLSYDPSTNQWRNLG----ENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPI 269 (381)
T ss_pred ccccccccccccchhhhcC----cCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCC
Confidence 4457779999999999998 3322222444455544433333222 1 3334666677778899887 355444
Q ss_pred -CCCCc----EEEEECCeEEEEEEcC--------------------CCCEEEEEEEcCCeEEEEEEECCCCCcccceEEe
Q 039590 255 -QSEPT----IIGVYNHSLCVLLSHN--------------------IENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFW 309 (379)
Q Consensus 255 -~~~~~----~l~~~~G~L~l~~~~~--------------------~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~ 309 (379)
+.... .-...+|.+-+..... ...+-+||.+++.+|..+..++. .+..-+.+.
T Consensus 270 ~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~GeLp~--~l~YG~s~~ 347 (381)
T COG3055 270 GSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGELPQ--GLAYGVSLS 347 (381)
T ss_pred CCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeecccCC--CccceEEEe
Confidence 22111 1123455555554331 23456899999999999888874 334445555
Q ss_pred eCCeEEEEEe
Q 039590 310 KKGAFFVVST 319 (379)
Q Consensus 310 ~~~~il~~~~ 319 (379)
-++.|+++..
T Consensus 348 ~nn~vl~IGG 357 (381)
T COG3055 348 YNNKVLLIGG 357 (381)
T ss_pred cCCcEEEEcc
Confidence 5677877765
No 43
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=93.37 E-value=0.25 Score=30.85 Aligned_cols=38 Identities=11% Similarity=0.274 Sum_probs=31.6
Q ss_pred cccEEECceEeeEeecCC--CCccEEEEEECCCceEEEec
Q 039590 212 SGSLYVDGVCYWLSRFRN--NDHAVILSFHLGNDVFEEVQ 249 (379)
Q Consensus 212 ~~~v~~~G~lywl~~~~~--~~~~~i~~fD~~~e~~~~i~ 249 (379)
..++.++|.+|.+++... .....+..||+.+++|+.++
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 457899999999998764 33568999999999999874
No 44
>PF13964 Kelch_6: Kelch motif
Probab=92.98 E-value=0.23 Score=31.61 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=25.3
Q ss_pred ceecceEEEe-cCC-----CCeEEEEecCCCceecCCCCccc
Q 039590 105 GPFDGIFCIH-GPT-----NDRLILCNLETKESRTLPKRRVV 140 (379)
Q Consensus 105 ~s~~GLl~~~-~~~-----~~~~~V~NP~T~~~~~LP~~~~~ 140 (379)
.+.+|-|.+. +.. .+.+.++||.|++|..+|+++..
T Consensus 8 v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 8 VVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred EEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence 4455555544 222 24799999999999999988753
No 45
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=92.85 E-value=4.1 Score=35.36 Aligned_cols=116 Identities=9% Similarity=0.218 Sum_probs=69.1
Q ss_pred EECceEeeEeecCCCCccEEEEEECCCceEEEecCCCCC---CCC-CcEEEE--ECC--eEEEEEEc---CCCCEEEEEE
Q 039590 216 YVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIP---QSE-PTIIGV--YNH--SLCVLLSH---NIENYYDIWV 284 (379)
Q Consensus 216 ~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~---~~~-~~~l~~--~~G--~L~l~~~~---~~~~~i~iW~ 284 (379)
.+||.+ .+... ..+...|+.|.++..+|.|+.. ... ...++- ..+ ++..+... .....++|+.
T Consensus 3 sCnGLl-c~~~~-----~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys 76 (230)
T TIGR01640 3 PCDGLI-CFSYG-----KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYT 76 (230)
T ss_pred ccceEE-EEecC-----CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEE
Confidence 478888 44432 3799999999999999866542 111 112221 112 22222211 1245788888
Q ss_pred EcCCeEEEEEEECCCCCcccceEEeeCCeEEEEEeC------CEEEEEeCCCCcEEE-eEE
Q 039590 285 MKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTS------GHLLLYDPNTQEMRD-LGV 338 (379)
Q Consensus 285 l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~------~~l~~yd~~t~~~~~-v~~ 338 (379)
+..++|.......+....... ++.-+|.++.+... ..++.||++++++++ +..
T Consensus 77 ~~~~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~ 136 (230)
T TIGR01640 77 LGSNSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPL 136 (230)
T ss_pred eCCCCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeec
Confidence 888899887632211111222 45557888776541 169999999999995 664
No 46
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=92.76 E-value=0.32 Score=30.82 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=32.3
Q ss_pred ccccEEECceEeeEeec--C--CCCccEEEEEECCCceEEEecCC
Q 039590 211 WSGSLYVDGVCYWLSRF--R--NNDHAVILSFHLGNDVFEEVQEP 251 (379)
Q Consensus 211 ~~~~v~~~G~lywl~~~--~--~~~~~~i~~fD~~~e~~~~i~~P 251 (379)
.+.++..+|.||.+.+. . ......+..||+++.+|+.++.+
T Consensus 4 ~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred ceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 35678899999999887 1 24456799999999999987643
No 47
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=91.97 E-value=14 Score=36.69 Aligned_cols=42 Identities=26% Similarity=0.565 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHhcCCcchhhhheeccccccccccChhhHhhh
Q 039590 7 NFPEDVMIEVLSRLSVKSLLRFKCVCREWCSLFENPSFISKH 48 (379)
Q Consensus 7 ~LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~~ 48 (379)
.||.++...||..|+.+++++++.||+.|+.++.+.....+.
T Consensus 110 ~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~ 151 (537)
T KOG0274|consen 110 LLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRM 151 (537)
T ss_pred cccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhh
Confidence 699999999999999999999999999999999988776643
No 48
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.03 E-value=8.6 Score=35.36 Aligned_cols=172 Identities=13% Similarity=0.226 Sum_probs=98.5
Q ss_pred eEEEEEEcCCCcccccccccCCcceeee-ccccEEECc-eEeeEeecCC-------------------------------
Q 039590 183 AHVAMYNLRTNSWRDLKSFKSDHYVMSF-WSGSLYVDG-VCYWLSRFRN------------------------------- 229 (379)
Q Consensus 183 ~~~~vyss~~~~W~~~~~~~~~~~~~~~-~~~~v~~~G-~lywl~~~~~------------------------------- 229 (379)
..++.|++.+++|..++ ...|... -..++..++ .+|...+-..
T Consensus 113 nd~Y~y~p~~nsW~kl~----t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~ 188 (381)
T COG3055 113 NDAYRYDPSTNSWHKLD----TRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKK 188 (381)
T ss_pred eeeEEecCCCChhheec----cccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCC
Confidence 34559999999999988 2223333 344445555 7777655320
Q ss_pred ----CCccEEEEEECCCceEEEec-CCCCCCCCCcEEEEECCeEEEEEEcC--CCCEEEEEEEcC----CeEEEEEEECC
Q 039590 230 ----NDHAVILSFHLGNDVFEEVQ-EPYIPQSEPTIIGVYNHSLCVLLSHN--IENYYDIWVMKD----KCWIKQLSVGP 298 (379)
Q Consensus 230 ----~~~~~i~~fD~~~e~~~~i~-~P~~~~~~~~~l~~~~G~L~l~~~~~--~~~~i~iW~l~~----~~W~~~~~i~~ 298 (379)
-....+++||+.+++|+..- .|.... ....++..+++|.++...- .-..-.+|+.+- ..|.+.-..++
T Consensus 189 ~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~-aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~ 267 (381)
T COG3055 189 AEDYFFNKEVLSYDPSTNQWRNLGENPFYGN-AGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPA 267 (381)
T ss_pred HHHhcccccccccccccchhhhcCcCcccCc-cCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCC
Confidence 22357999999999999886 565541 1224555666788887763 123334443332 78888765553
Q ss_pred CCC-----cccceEEeeCCeEEEEEe-------------------------CCEEEEEeCCCCcEEEeEE-eecc-cee-
Q 039590 299 FVG-----VQRPLGFWKKGAFFVVST-------------------------SGHLLLYDPNTQEMRDLGV-TCFD-VSV- 345 (379)
Q Consensus 299 ~~~-----~~~~~~~~~~~~il~~~~-------------------------~~~l~~yd~~t~~~~~v~~-~~~~-~~~- 345 (379)
... +.--+.--.++.+++... ..+++.+| .+.|+.+.- .... .-.
T Consensus 268 ~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~YG~s 345 (381)
T COG3055 268 PIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLAYGVS 345 (381)
T ss_pred CCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCccceEE
Confidence 321 111111112344444331 34577777 788887762 2111 112
Q ss_pred EEEeeeeeecCCCCCc
Q 039590 346 HMYKESLIRLKGGDNL 361 (379)
Q Consensus 346 ~~y~~sl~~~~~~~~~ 361 (379)
+.|-+.+..+++....
T Consensus 346 ~~~nn~vl~IGGE~~~ 361 (381)
T COG3055 346 LSYNNKVLLIGGETSG 361 (381)
T ss_pred EecCCcEEEEccccCC
Confidence 8888888888875443
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=88.96 E-value=0.15 Score=47.43 Aligned_cols=37 Identities=32% Similarity=0.565 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHhcCCcchhhhheeccccccccccChh
Q 039590 7 NFPEDVMIEVLSRLSVKSLLRFKCVCREWCSLFENPS 43 (379)
Q Consensus 7 ~LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~s~~ 43 (379)
.||.|++.+||+.|..|+++|++.+||.|+-+..|..
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 6999999999999999999999999999999887765
No 50
>smart00612 Kelch Kelch domain.
Probab=88.65 E-value=0.7 Score=28.41 Aligned_cols=16 Identities=38% Similarity=0.750 Sum_probs=13.9
Q ss_pred EEEEEEcCCCcccccc
Q 039590 184 HVAMYNLRTNSWRDLK 199 (379)
Q Consensus 184 ~~~vyss~~~~W~~~~ 199 (379)
.+++|+.++++|+.++
T Consensus 16 ~v~~yd~~~~~W~~~~ 31 (47)
T smart00612 16 SVEVYDPETNKWTPLP 31 (47)
T ss_pred eEEEECCCCCeEccCC
Confidence 4459999999999988
No 51
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=88.32 E-value=6.3 Score=35.00 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=72.3
Q ss_pred ccceecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceee
Q 039590 103 LGGPFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEF 182 (379)
Q Consensus 103 ~~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~ 182 (379)
+++.-+|-|-...-..+.+...||.++.--.+|.+....... -.+.-|+... +.+. ... .
T Consensus 194 i~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gs-------Rriwsdpig~----~wit-twg--------~ 253 (353)
T COG4257 194 ICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGS-------RRIWSDPIGR----AWIT-TWG--------T 253 (353)
T ss_pred eEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccc-------cccccCccCc----EEEe-ccC--------C
Confidence 555666666666433345777899999777777776532211 2233333221 1221 111 2
Q ss_pred eEEEEEEcCCCcccccccccCCcceeeeccccEEECc-eEeeEeecCCCCccEEEEEECCCceEEEecCCCCC
Q 039590 183 AHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDG-VCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIP 254 (379)
Q Consensus 183 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~ 254 (379)
..++.|+..+.+|..-. +| ...+ ...++++|. -.-|+..-. ...|..||.++++|+++++|...
T Consensus 254 g~l~rfdPs~~sW~eyp-LP-gs~a---rpys~rVD~~grVW~sea~---agai~rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 254 GSLHRFDPSVTSWIEYP-LP-GSKA---RPYSMRVDRHGRVWLSEAD---AGAIGRFDPETARFTVLPIPRPN 318 (353)
T ss_pred ceeeEeCcccccceeee-CC-CCCC---CcceeeeccCCcEEeeccc---cCceeecCcccceEEEecCCCCC
Confidence 34459999999998776 11 1111 223344432 234554333 56899999999999999998765
No 52
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=85.02 E-value=2.7 Score=26.31 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=17.7
Q ss_pred eeCCeEEEEEe-------CCEEEEEeCCCCcEEEeE
Q 039590 309 WKKGAFFVVST-------SGHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 309 ~~~~~il~~~~-------~~~l~~yd~~t~~~~~v~ 337 (379)
..++.|++..+ -..+..||+++++|+++.
T Consensus 10 ~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~ 45 (49)
T PF13418_consen 10 IGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP 45 (49)
T ss_dssp E-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--
T ss_pred EeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC
Confidence 34567777654 247999999999999883
No 53
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=84.90 E-value=20 Score=33.36 Aligned_cols=115 Identities=11% Similarity=0.241 Sum_probs=70.7
Q ss_pred CceEeeEeecCCCCccEEEEEECCCce--EE---EecCCCCCCCCCcEEE-EECCeEEEEEEcCCCCEEEEEEEcC--Ce
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDV--FE---EVQEPYIPQSEPTIIG-VYNHSLCVLLSHNIENYYDIWVMKD--KC 289 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~--~~---~i~~P~~~~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~--~~ 289 (379)
+|...|....+ .+.|..|++..+. .. .+.+|.... +..++ .-+|+..++... ....+.++.+.. ..
T Consensus 154 dg~~v~v~dlG---~D~v~~~~~~~~~~~l~~~~~~~~~~G~G--PRh~~f~pdg~~~Yv~~e-~s~~v~v~~~~~~~g~ 227 (345)
T PF10282_consen 154 DGRFVYVPDLG---ADRVYVYDIDDDTGKLTPVDSIKVPPGSG--PRHLAFSPDGKYAYVVNE-LSNTVSVFDYDPSDGS 227 (345)
T ss_dssp TSSEEEEEETT---TTEEEEEEE-TTS-TEEEEEEEECSTTSS--EEEEEE-TTSSEEEEEET-TTTEEEEEEEETTTTE
T ss_pred CCCEEEEEecC---CCEEEEEEEeCCCceEEEeeccccccCCC--CcEEEEcCCcCEEEEecC-CCCcEEEEeecccCCc
Confidence 56655666555 5688888887665 53 355665541 12444 336654444433 478999999983 77
Q ss_pred EEEEEEECCCCC------cccceEEeeCCeEEEEEe--CCEEEEEeC--CCCcEEEeEE
Q 039590 290 WIKQLSVGPFVG------VQRPLGFWKKGAFFVVST--SGHLLLYDP--NTQEMRDLGV 338 (379)
Q Consensus 290 W~~~~~i~~~~~------~~~~~~~~~~~~il~~~~--~~~l~~yd~--~t~~~~~v~~ 338 (379)
++...++...+. ...-+.+..+|+.+++.. .+.+.+|++ ++++++.+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 228 LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred eeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence 887777764421 123355667787666644 678888987 5678888774
No 54
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=83.86 E-value=20 Score=31.31 Aligned_cols=119 Identities=16% Similarity=0.257 Sum_probs=70.8
Q ss_pred ccccEEECceEeeEeecCCCCccEEEEEECCCce-EEEecCCCCC--CC--------CCcEEEEECCeEEEEEEcC-CCC
Q 039590 211 WSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDV-FEEVQEPYIP--QS--------EPTIIGVYNHSLCVLLSHN-IEN 278 (379)
Q Consensus 211 ~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~-~~~i~~P~~~--~~--------~~~~l~~~~G~L~l~~~~~-~~~ 278 (379)
...-|+.||++|...... ..|+.||+.++. .....+|... .. ..+.+++.+.-|.++.... ...
T Consensus 70 gTg~VVynGs~yynk~~t----~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g 145 (249)
T KOG3545|consen 70 GTGHVVYNGSLYYNKAGT----RNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAG 145 (249)
T ss_pred ccceEEEcceEEeeccCC----cceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCC
Confidence 455699999999987554 689999999854 3344555443 11 1236777777777776553 445
Q ss_pred EEEEEEEcC------CeEEEEEEECCCCCcccceEEeeCCeEEEEEe----CCEE-EEEeCCCCcEEEeEE
Q 039590 279 YYDIWVMKD------KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST----SGHL-LLYDPNTQEMRDLGV 338 (379)
Q Consensus 279 ~i~iW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~----~~~l-~~yd~~t~~~~~v~~ 338 (379)
.+.|=.|+. ..|.-.+.-. . ..-++.-+|-++.+.. +..+ ++||..+++-+.+.+
T Consensus 146 ~iv~skLdp~tl~~e~tW~T~~~k~---~--~~~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~i 211 (249)
T KOG3545|consen 146 TIVLSKLDPETLEVERTWNTTLPKR---S--AGNAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDL 211 (249)
T ss_pred cEEeeccCHHHhheeeeeccccCCC---C--cCceEEEeeeeEEEeccccCCceEEEEEEcCCCceecccc
Confidence 555566654 3453222111 1 1122344566666643 2333 799999998877664
No 55
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=83.83 E-value=42 Score=32.17 Aligned_cols=151 Identities=17% Similarity=0.159 Sum_probs=82.3
Q ss_pred EEEEEEcCCCcccc-cccccCCcceeeeccccEEECceEeeEeecCCCCccEEEEEECCCceE----EEecCCCCCCCCC
Q 039590 184 HVAMYNLRTNSWRD-LKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVF----EEVQEPYIPQSEP 258 (379)
Q Consensus 184 ~~~vyss~~~~W~~-~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~----~~i~~P~~~~~~~ 258 (379)
.+++|++.+..=+. +..|.... ..-.+-.||.|...+... ..|-.||.++... ..-+.|...
T Consensus 49 rvqly~~~~~~~~k~~srFk~~v-----~s~~fR~DG~LlaaGD~s----G~V~vfD~k~r~iLR~~~ah~apv~~---- 115 (487)
T KOG0310|consen 49 RVQLYSSVTRSVRKTFSRFKDVV-----YSVDFRSDGRLLAAGDES----GHVKVFDMKSRVILRQLYAHQAPVHV---- 115 (487)
T ss_pred EEEEEecchhhhhhhHHhhccce-----eEEEeecCCeEEEccCCc----CcEEEeccccHHHHHHHhhccCceeE----
Confidence 34499998864432 34332211 222344579988776543 6899999665221 112223221
Q ss_pred cEEEEECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEee-CCeEEEEEe-CCEEEEEeCCCCcEEEe
Q 039590 259 TIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWK-KGAFFVVST-SGHLLLYDPNTQEMRDL 336 (379)
Q Consensus 259 ~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~-~~~il~~~~-~~~l~~yd~~t~~~~~v 336 (379)
.+....++.+.+.+.+ +....+|.+.... + ...+....+..+-..+.. ++-|++... ++.+-.||.++..-+.+
T Consensus 116 ~~f~~~d~t~l~s~sD--d~v~k~~d~s~a~-v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~ 191 (487)
T KOG0310|consen 116 TKFSPQDNTMLVSGSD--DKVVKYWDLSTAY-V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV 191 (487)
T ss_pred EEecccCCeEEEecCC--CceEEEEEcCCcE-E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE
Confidence 1333456666666655 7889999999732 2 444554433333333333 334555543 78999999998873333
Q ss_pred EEeecccee-EEEeee
Q 039590 337 GVTCFDVSV-HMYKES 351 (379)
Q Consensus 337 ~~~~~~~~~-~~y~~s 351 (379)
.++....-. ++|.||
T Consensus 192 elnhg~pVe~vl~lps 207 (487)
T KOG0310|consen 192 ELNHGCPVESVLALPS 207 (487)
T ss_pred EecCCCceeeEEEcCC
Confidence 343222223 677776
No 56
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=83.23 E-value=15 Score=32.28 Aligned_cols=162 Identities=17% Similarity=0.167 Sum_probs=88.2
Q ss_pred EEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecCCCCccEEEEEECCC----ceEEEecCCCCCC-CCCcEE
Q 039590 187 MYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGN----DVFEEVQEPYIPQ-SEPTII 261 (379)
Q Consensus 187 vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~----e~~~~i~~P~~~~-~~~~~l 261 (379)
+|+..++++|.+. .....++ ...++.-||.+.-..+.. .....+-.|+..+ ..|....-..... -+....
T Consensus 50 ~yD~~tn~~rpl~---v~td~FC-Sgg~~L~dG~ll~tGG~~-~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 50 EYDPNTNTFRPLT---VQTDTFC-SGGAFLPDGRLLQTGGDN-DGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEecCCCcEEecc---CCCCCcc-cCcCCCCCCCEEEeCCCC-ccccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 8999999999887 2111222 334455678776555443 3345678888765 4565443211111 122234
Q ss_pred EEECCeEEEEEEcCCCCEEEEEEEcC-----CeEEEEEEE-CCCCCcccceE-EeeCCeEEEEEeCCEEEEEeCCCCcE-
Q 039590 262 GVYNHSLCVLLSHNIENYYDIWVMKD-----KCWIKQLSV-GPFVGVQRPLG-FWKKGAFFVVSTSGHLLLYDPNTQEM- 333 (379)
Q Consensus 262 ~~~~G~L~l~~~~~~~~~i~iW~l~~-----~~W~~~~~i-~~~~~~~~~~~-~~~~~~il~~~~~~~l~~yd~~t~~~- 333 (379)
.--+|++.+++... ....+.|=-.. ..|...... +..+....|+. +..+|+|++.. +.+-..||.+++++
T Consensus 125 ~L~DG~vlIvGG~~-~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~a-n~~s~i~d~~~n~v~ 202 (243)
T PF07250_consen 125 TLPDGRVLIVGGSN-NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFA-NRGSIIYDYKTNTVV 202 (243)
T ss_pred ECCCCCEEEEeCcC-CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEE-cCCcEEEeCCCCeEE
Confidence 45689999998873 44455553221 112111111 11122245544 35678888765 45677789999976
Q ss_pred EEeE-Eeecccee-EEEeeeeeecCC
Q 039590 334 RDLG-VTCFDVSV-HMYKESLIRLKG 357 (379)
Q Consensus 334 ~~v~-~~~~~~~~-~~y~~sl~~~~~ 357 (379)
+.+. +.+. .+ .++..|-+.|+=
T Consensus 203 ~~lP~lPg~--~R~YP~sgssvmLPl 226 (243)
T PF07250_consen 203 RTLPDLPGG--PRNYPASGSSVMLPL 226 (243)
T ss_pred eeCCCCCCC--ceecCCCcceEEecC
Confidence 5666 3332 33 666666655543
No 57
>PLN02772 guanylate kinase
Probab=83.16 E-value=7.5 Score=36.69 Aligned_cols=75 Identities=8% Similarity=0.041 Sum_probs=52.9
Q ss_pred ccccEEECceEeeEeecCCC--CccEEEEEECCCceEEEec----CCCCCCCCCcEEEEECCeEEEEEEcCCCCEEEEEE
Q 039590 211 WSGSLYVDGVCYWLSRFRNN--DHAVILSFHLGNDVFEEVQ----EPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWV 284 (379)
Q Consensus 211 ~~~~v~~~G~lywl~~~~~~--~~~~i~~fD~~~e~~~~i~----~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~ 284 (379)
...++.++..+|.+++.... ....+.+||..+.+|..-. .|....++ ..++.-+++|.++... ....-+||.
T Consensus 27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~Gh-Sa~v~~~~rilv~~~~-~~~~~~~w~ 104 (398)
T PLN02772 27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGY-SAVVLNKDRILVIKKG-SAPDDSIWF 104 (398)
T ss_pred cceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcc-eEEEECCceEEEEeCC-CCCccceEE
Confidence 56789999999999875532 3457999999999998643 23332322 2444567899988765 345689999
Q ss_pred EcC
Q 039590 285 MKD 287 (379)
Q Consensus 285 l~~ 287 (379)
|+-
T Consensus 105 l~~ 107 (398)
T PLN02772 105 LEV 107 (398)
T ss_pred EEc
Confidence 975
No 58
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=82.10 E-value=2.5 Score=26.52 Aligned_cols=38 Identities=8% Similarity=0.215 Sum_probs=22.3
Q ss_pred cccEEE-CceEeeEeecCCC--CccEEEEEECCCceEEEec
Q 039590 212 SGSLYV-DGVCYWLSRFRNN--DHAVILSFHLGNDVFEEVQ 249 (379)
Q Consensus 212 ~~~v~~-~G~lywl~~~~~~--~~~~i~~fD~~~e~~~~i~ 249 (379)
+.++.+ ++.+|...+.... ....+..||+.+++|+.++
T Consensus 5 h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~ 45 (49)
T PF13418_consen 5 HSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP 45 (49)
T ss_dssp -EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--
T ss_pred EEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC
Confidence 345555 5788887766532 2346899999999999984
No 59
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=81.26 E-value=38 Score=31.56 Aligned_cols=83 Identities=13% Similarity=0.296 Sum_probs=50.3
Q ss_pred EEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecCCCCccEEEEEECCCce-----------EEEecCCCCCC
Q 039590 187 MYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDV-----------FEEVQEPYIPQ 255 (379)
Q Consensus 187 vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~-----------~~~i~~P~~~~ 255 (379)
.|+-++..|+.++ +- .+++...+.|+..-=-|++-........|-+.|+.... |..+..|....
T Consensus 203 sfDt~~~~W~~~G----dW-~LPF~G~a~y~~el~~W~Gls~~~~~~~lca~dv~~~~~~~~pp~~~~~~~~l~~~~~~~ 277 (342)
T PF07893_consen 203 SFDTESHEWRKHG----DW-MLPFHGQAEYVPELDLWFGLSSDGGGGHLCACDVSSADSASPPPEWKLTWEELFPPEEWR 277 (342)
T ss_pred EEEcCCcceeecc----ce-ecCcCCccEECCCcCeEEEeccCCCCcEEEEEeccccccCCCCCcceecccccccccccc
Confidence 7788889999998 32 34445667776666667766553222588999987732 22233332222
Q ss_pred CCCcEEEEE-CCeEEEEEEc
Q 039590 256 SEPTIIGVY-NHSLCVLLSH 274 (379)
Q Consensus 256 ~~~~~l~~~-~G~L~l~~~~ 274 (379)
.....|+.+ +|+.|++...
T Consensus 278 ~~~~~Lv~lG~grFCi~~~~ 297 (342)
T PF07893_consen 278 HVGATLVYLGSGRFCIVEFF 297 (342)
T ss_pred ccCceEEECCCCCEEEEEEe
Confidence 223366655 4678888754
No 60
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=79.48 E-value=59 Score=30.98 Aligned_cols=147 Identities=12% Similarity=0.034 Sum_probs=78.0
Q ss_pred eEEEEEEcCCC-----cccccccccCCcceeeeccccEEECceEeeEeecCCCCccEEEEEECCCce---EEEecCCCCC
Q 039590 183 AHVAMYNLRTN-----SWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDV---FEEVQEPYIP 254 (379)
Q Consensus 183 ~~~~vyss~~~-----~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~---~~~i~~P~~~ 254 (379)
.++++.+...+ .|+.+. ..... .....-..++.+|.++... .....|++.|+.+-. |..+-+|...
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~---~~~~~--~~~~v~~~~~~~yi~Tn~~-a~~~~l~~~~l~~~~~~~~~~~l~~~~~ 325 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLS---PREDG--VEYYVDHHGDRLYILTNDD-APNGRLVAVDLADPSPAEWWTVLIPEDE 325 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEE---ESSSS---EEEEEEETTEEEEEE-TT--TT-EEEEEETTSTSGGGEEEEEE--SS
T ss_pred CeEEEEeccccCCCcCCcEEEe---CCCCc--eEEEEEccCCEEEEeeCCC-CCCcEEEEecccccccccceeEEcCCCC
Confidence 56557777664 666665 11100 1122234478888877643 445789999998765 6643333322
Q ss_pred CCCCc-EEEEECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEE-eeCCeEEEEEe----CCEEEEEeC
Q 039590 255 QSEPT-IIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGF-WKKGAFFVVST----SGHLLLYDP 328 (379)
Q Consensus 255 ~~~~~-~l~~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~-~~~~~il~~~~----~~~l~~yd~ 328 (379)
. ... .+...++.|.+.........|.++-+. ..|.......+..+-...+.. ...+.+++... ...++.||+
T Consensus 326 ~-~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~-~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~ 403 (414)
T PF02897_consen 326 D-VSLEDVSLFKDYLVLSYRENGSSRLRVYDLD-DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDL 403 (414)
T ss_dssp S-EEEEEEEEETTEEEEEEEETTEEEEEEEETT--TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEET
T ss_pred c-eeEEEEEEECCEEEEEEEECCccEEEEEECC-CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 1 111 445678888888877444455555554 244444332222221111111 12345555543 468999999
Q ss_pred CCCcEEEeE
Q 039590 329 NTQEMRDLG 337 (379)
Q Consensus 329 ~t~~~~~v~ 337 (379)
++++.+.+.
T Consensus 404 ~t~~~~~~k 412 (414)
T PF02897_consen 404 ATGELTLLK 412 (414)
T ss_dssp TTTCEEEEE
T ss_pred CCCCEEEEE
Confidence 999998775
No 61
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=78.58 E-value=59 Score=30.78 Aligned_cols=110 Identities=10% Similarity=0.083 Sum_probs=61.7
Q ss_pred cccEEECceEeeEeecCCCCccEEEEEECCC--ceEEEecCCCC--C-C-----CCCcEEEEECCeEEEEEEcCCCCEEE
Q 039590 212 SGSLYVDGVCYWLSRFRNNDHAVILSFHLGN--DVFEEVQEPYI--P-Q-----SEPTIIGVYNHSLCVLLSHNIENYYD 281 (379)
Q Consensus 212 ~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~--e~~~~i~~P~~--~-~-----~~~~~l~~~~G~L~l~~~~~~~~~i~ 281 (379)
..++..+|.+|.....+ .+.+||..+ ..|+. +++.. . . .....++..+|++++.... ..+.
T Consensus 63 ~sPvv~~~~vy~~~~~g-----~l~ald~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~---g~l~ 133 (394)
T PRK11138 63 LHPAVAYNKVYAADRAG-----LVKALDADTGKEIWSV-DLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEK---GQVY 133 (394)
T ss_pred eccEEECCEEEEECCCC-----eEEEEECCCCcEeeEE-cCCCcccccccccccccccccEEECCEEEEEcCC---CEEE
Confidence 35688999999987665 899999864 45653 22211 0 0 0011345667777654322 2222
Q ss_pred EEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEEEeCCEEEEEeCCCCcEEE
Q 039590 282 IWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRD 335 (379)
Q Consensus 282 iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~~ 335 (379)
-.-.+. ..|+... + ......|+. .++.+++...++.++.+|+++++...
T Consensus 134 ald~~tG~~~W~~~~--~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W 184 (394)
T PRK11138 134 ALNAEDGEVAWQTKV--A-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKW 184 (394)
T ss_pred EEECCCCCCcccccC--C-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEee
Confidence 222222 5776532 1 111123332 24566666667899999999988653
No 62
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=78.53 E-value=19 Score=28.12 Aligned_cols=65 Identities=22% Similarity=0.195 Sum_probs=47.3
Q ss_pred EEEEEECCCc--eEEEecCCCCC----CCC-------C-cEEEEECCeEEEEEEcC--------CCCEEEEEEEcC----
Q 039590 234 VILSFHLGND--VFEEVQEPYIP----QSE-------P-TIIGVYNHSLCVLLSHN--------IENYYDIWVMKD---- 287 (379)
Q Consensus 234 ~i~~fD~~~e--~~~~i~~P~~~----~~~-------~-~~l~~~~G~L~l~~~~~--------~~~~i~iW~l~~---- 287 (379)
.|+..|+-.+ .++-|++|... ... . -.++..+|+|-.+.... ....+..|.|..
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 6888998765 57778888765 110 1 16778999998887653 245799999986
Q ss_pred -CeEEEEEEECC
Q 039590 288 -KCWIKQLSVGP 298 (379)
Q Consensus 288 -~~W~~~~~i~~ 298 (379)
..|++-++++.
T Consensus 87 ~~~W~~d~~v~~ 98 (131)
T PF07762_consen 87 SWEWKKDCEVDL 98 (131)
T ss_pred CCCEEEeEEEEh
Confidence 68999988863
No 63
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=78.31 E-value=45 Score=29.04 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=66.1
Q ss_pred CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEEE--ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEE
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGV--YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLS 295 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~--~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~ 295 (379)
+|.|||..... ..|..+|+.+.+.+.+..|.. ..++. .+|.|++.... .+.+.-++...++....
T Consensus 11 ~g~l~~~D~~~----~~i~~~~~~~~~~~~~~~~~~-----~G~~~~~~~g~l~v~~~~----~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 11 DGRLYWVDIPG----GRIYRVDPDTGEVEVIDLPGP-----NGMAFDRPDGRLYVADSG----GIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp TTEEEEEETTT----TEEEEEETTTTEEEEEESSSE-----EEEEEECTTSEEEEEETT----CEEEEETTTTEEEEEEE
T ss_pred CCEEEEEEcCC----CEEEEEECCCCeEEEEecCCC-----ceEEEEccCCEEEEEEcC----ceEEEecCCCcEEEEee
Confidence 69999998654 689999999999998888762 12333 35677665532 33333223367777777
Q ss_pred ECCCC-Ccccc--eEEeeCCeEEEEEeC---------CEEEEEeCCCCcEEEeE
Q 039590 296 VGPFV-GVQRP--LGFWKKGAFFVVSTS---------GHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 296 i~~~~-~~~~~--~~~~~~~~il~~~~~---------~~l~~yd~~t~~~~~v~ 337 (379)
..... ....| +.+..+|.+++.... ++++.+++. ++.+.+.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~ 130 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA 130 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe
Confidence 63221 22333 555667787776531 568889988 6666554
No 64
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=77.31 E-value=42 Score=31.03 Aligned_cols=118 Identities=16% Similarity=0.131 Sum_probs=66.4
Q ss_pred cccEEE--CceEeeEeecCCCCccEEEEEECCCceEEEe---cCCCCC---CCCC---cEEEE---ECCeEEEEEEcC--
Q 039590 212 SGSLYV--DGVCYWLSRFRNNDHAVILSFHLGNDVFEEV---QEPYIP---QSEP---TIIGV---YNHSLCVLLSHN-- 275 (379)
Q Consensus 212 ~~~v~~--~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i---~~P~~~---~~~~---~~l~~---~~G~L~l~~~~~-- 275 (379)
..+++. +|.+||++..+ .|...|+..+.-... ++-... ..|+ .++.. ..|+|+++....
T Consensus 187 ~~~~~~~~~~~~~F~Sy~G-----~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~ 261 (342)
T PF06433_consen 187 EHPAYSRDGGRLYFVSYEG-----NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGE 261 (342)
T ss_dssp S--EEETTTTEEEEEBTTS-----EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--T
T ss_pred cccceECCCCeEEEEecCC-----EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCC
Confidence 344444 36899988877 899999988764332 221111 2222 24443 357888764321
Q ss_pred ---CCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCe-EEE-EEe-CCEEEEEeCCCCcEEE
Q 039590 276 ---IENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGA-FFV-VST-SGHLLLYDPNTQEMRD 335 (379)
Q Consensus 276 ---~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~-~~~-~~~l~~yd~~t~~~~~ 335 (379)
+...=+||+++-..=.++.+|+.... ...+.+.++++ +++ +.. ++.+.+||..|++..+
T Consensus 262 gsHKdpgteVWv~D~~t~krv~Ri~l~~~-~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 262 GSHKDPGTEVWVYDLKTHKRVARIPLEHP-IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp T-TTS-EEEEEEEETTTTEEEEEEEEEEE-ESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred CCccCCceEEEEEECCCCeEEEEEeCCCc-cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 56788999998733345566653211 12456666665 444 333 5789999999987554
No 65
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=76.82 E-value=9.1 Score=21.36 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=19.9
Q ss_pred eCCeEEEEEeCCEEEEEeCCCCcEEE
Q 039590 310 KKGAFFVVSTSGHLLLYDPNTQEMRD 335 (379)
Q Consensus 310 ~~~~il~~~~~~~l~~yd~~t~~~~~ 335 (379)
.++.+++...++.++++|.++++...
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEE
Confidence 34566666668999999999988654
No 66
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=76.21 E-value=6.4 Score=24.68 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=28.0
Q ss_pred EEEEECCeEEEEEEc----CCCCEEEEEEEcC--CeEEEEEE
Q 039590 260 IIGVYNHSLCVLLSH----NIENYYDIWVMKD--KCWIKQLS 295 (379)
Q Consensus 260 ~l~~~~G~L~l~~~~----~~~~~i~iW~l~~--~~W~~~~~ 295 (379)
..++.+++|++++.. .....-++|+++. ..|+++..
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 567899999999887 2455678888887 89987653
No 67
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=75.49 E-value=51 Score=28.22 Aligned_cols=108 Identities=16% Similarity=0.099 Sum_probs=61.8
Q ss_pred cEEECceEeeEeecCCCCccEEEEEECCCce--EEEecCCCCCCCCCcEEEEECCeEEEEEEcCCCCEEEEEEEc--C--
Q 039590 214 SLYVDGVCYWLSRFRNNDHAVILSFHLGNDV--FEEVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMK--D-- 287 (379)
Q Consensus 214 ~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~--~~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~--~-- 287 (379)
.+..+|.+|.....+ .|.++|..+.+ |+. .++..... .....+|.+++.... . .|+.++ +
T Consensus 32 ~~~~~~~v~~~~~~~-----~l~~~d~~tG~~~W~~-~~~~~~~~---~~~~~~~~v~v~~~~---~--~l~~~d~~tG~ 97 (238)
T PF13360_consen 32 AVPDGGRVYVASGDG-----NLYALDAKTGKVLWRF-DLPGPISG---APVVDGGRVYVGTSD---G--SLYALDAKTGK 97 (238)
T ss_dssp EEEETTEEEEEETTS-----EEEEEETTTSEEEEEE-ECSSCGGS---GEEEETTEEEEEETT---S--EEEEEETTTSC
T ss_pred EEEeCCEEEEEcCCC-----EEEEEECCCCCEEEEe-eccccccc---eeeecccccccccce---e--eeEecccCCcc
Confidence 455788888875444 99999986554 433 33333211 246777888766632 3 555555 3
Q ss_pred CeEEE-EEEECCCCCcccceEEeeCCeEEEEEeCCEEEEEeCCCCcEEE
Q 039590 288 KCWIK-QLSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRD 335 (379)
Q Consensus 288 ~~W~~-~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~~ 335 (379)
..|.. ...-+.......+.....++.+++...++.++.+|+++++...
T Consensus 98 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 98 VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLW 146 (238)
T ss_dssp EEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEE
T ss_pred eeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEE
Confidence 57874 3322222211122222234455665558999999999998754
No 68
>smart00612 Kelch Kelch domain.
Probab=73.86 E-value=11 Score=22.70 Aligned_cols=18 Identities=0% Similarity=0.076 Sum_probs=15.1
Q ss_pred ccEEEEEECCCceEEEec
Q 039590 232 HAVILSFHLGNDVFEEVQ 249 (379)
Q Consensus 232 ~~~i~~fD~~~e~~~~i~ 249 (379)
...+..||+.+.+|+.++
T Consensus 14 ~~~v~~yd~~~~~W~~~~ 31 (47)
T smart00612 14 LKSVEVYDPETNKWTPLP 31 (47)
T ss_pred eeeEEEECCCCCeEccCC
Confidence 357899999999998765
No 69
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=73.32 E-value=79 Score=29.36 Aligned_cols=115 Identities=17% Similarity=0.287 Sum_probs=66.4
Q ss_pred Cc-eEeeEeecCCCCccEEEEEECC--CceEEEec----CCCCCCC--CCcEEEE-ECCeEEEEEEcCCCCEEEEEEEcC
Q 039590 218 DG-VCYWLSRFRNNDHAVILSFHLG--NDVFEEVQ----EPYIPQS--EPTIIGV-YNHSLCVLLSHNIENYYDIWVMKD 287 (379)
Q Consensus 218 ~G-~lywl~~~~~~~~~~i~~fD~~--~e~~~~i~----~P~~~~~--~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~ 287 (379)
+| .+|.+... ...|.+|++. +..++.++ +|..... ....|.. -+|+..++... ..+.|.++.++.
T Consensus 202 dg~~~Yv~~e~----s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr-~~~sI~vf~~d~ 276 (345)
T PF10282_consen 202 DGKYAYVVNEL----SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR-GSNSISVFDLDP 276 (345)
T ss_dssp TSSEEEEEETT----TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC-TTTEEEEEEECT
T ss_pred CcCEEEEecCC----CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec-cCCEEEEEEEec
Confidence 55 45555433 2467777666 66666543 3443321 2224554 36764444443 488999999954
Q ss_pred --CeEEEEEEECCCCCcccceEEeeCCeEEEEEe--CCEEEEE--eCCCCcEEEeE
Q 039590 288 --KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST--SGHLLLY--DPNTQEMRDLG 337 (379)
Q Consensus 288 --~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~--~~~l~~y--d~~t~~~~~v~ 337 (379)
..-+.+..++..-...+-+.+..+|+.+++.. ++.+.+| |.++++++.+.
T Consensus 277 ~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 277 ATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp TTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 44444444443222345566667888766654 5677777 56788888776
No 70
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=73.11 E-value=59 Score=27.83 Aligned_cols=107 Identities=15% Similarity=0.116 Sum_probs=55.9
Q ss_pred EEECceEeeEeecCCCCccEEEEEECCCce--EEE-ecCCCCCCC------CCcEEEEECCeEEEEEEcCCCCEEEEEEE
Q 039590 215 LYVDGVCYWLSRFRNNDHAVILSFHLGNDV--FEE-VQEPYIPQS------EPTIIGVYNHSLCVLLSHNIENYYDIWVM 285 (379)
Q Consensus 215 v~~~G~lywl~~~~~~~~~~i~~fD~~~e~--~~~-i~~P~~~~~------~~~~l~~~~G~L~l~~~~~~~~~i~iW~l 285 (379)
...++.+|.....+ .|.++|+.+.+ |+. +..|..... ....++..+|.+++.... ...+.+ -+
T Consensus 119 ~~~~~~~~~~~~~g-----~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--g~~~~~-d~ 190 (238)
T PF13360_consen 119 AVDGDRLYVGTSSG-----KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGD--GRVVAV-DL 190 (238)
T ss_dssp EEETTEEEEEETCS-----EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCT--SSEEEE-ET
T ss_pred eEecCEEEEEeccC-----cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCC--CeEEEE-EC
Confidence 33466777666554 89999988654 443 333332210 011444456755554443 333444 44
Q ss_pred cC--CeEEEEEEECCCCCcccceEEeeCCeEEEEEeCCEEEEEeCCCCcEEE
Q 039590 286 KD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRD 335 (379)
Q Consensus 286 ~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~~ 335 (379)
.. ..|... +.. ........++.+++...++.++++|++|++...
T Consensus 191 ~tg~~~w~~~--~~~----~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 191 ATGEKLWSKP--ISG----IYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp TTTEEEEEEC--SS-----ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCCCEEEEec--CCC----ccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 43 246322 221 111122334455555558999999999998754
No 71
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=72.77 E-value=5.7 Score=23.65 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=18.9
Q ss_pred ccccEEECceEeeEeecCCCCccEEEEEECCC
Q 039590 211 WSGSLYVDGVCYWLSRFRNNDHAVILSFHLGN 242 (379)
Q Consensus 211 ~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~ 242 (379)
....++.+|.+|..+..+ .+.+||..+
T Consensus 14 ~~~~~v~~g~vyv~~~dg-----~l~ald~~t 40 (40)
T PF13570_consen 14 WSSPAVAGGRVYVGTGDG-----NLYALDAAT 40 (40)
T ss_dssp -S--EECTSEEEEE-TTS-----EEEEEETT-
T ss_pred CcCCEEECCEEEEEcCCC-----EEEEEeCCC
Confidence 355688899999988766 899999864
No 72
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=71.55 E-value=89 Score=29.24 Aligned_cols=127 Identities=14% Similarity=0.142 Sum_probs=61.4
Q ss_pred EEEcCCC--cccccccccCCcceeeeccccEEECceEeeEeecCCCCccEEEEEECCC--ceEEEecCCCCCCCCCcEEE
Q 039590 187 MYNLRTN--SWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGN--DVFEEVQEPYIPQSEPTIIG 262 (379)
Q Consensus 187 vyss~~~--~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~--e~~~~i~~P~~~~~~~~~l~ 262 (379)
.|+..++ .|+.-.. . ......+..+|.+|.-...+ .+.+||..+ ..|+. .++..... ..+
T Consensus 79 a~d~~tG~~~W~~~~~---~----~~~~~p~v~~~~v~v~~~~g-----~l~ald~~tG~~~W~~-~~~~~~~~---~p~ 142 (377)
T TIGR03300 79 ALDAETGKRLWRVDLD---E----RLSGGVGADGGLVFVGTEKG-----EVIALDAEDGKELWRA-KLSSEVLS---PPL 142 (377)
T ss_pred EEEccCCcEeeeecCC---C----CcccceEEcCCEEEEEcCCC-----EEEEEECCCCcEeeee-ccCceeec---CCE
Confidence 5665444 5865431 1 11233456678888655444 899999854 45653 22221110 112
Q ss_pred EECCeEEEEEEcCCCCEEEEEEEcC--CeEEEEEEECCC--CCcccceEEeeCCeEEEEEeCCEEEEEeCCCCcEE
Q 039590 263 VYNHSLCVLLSHNIENYYDIWVMKD--KCWIKQLSVGPF--VGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMR 334 (379)
Q Consensus 263 ~~~G~L~l~~~~~~~~~i~iW~l~~--~~W~~~~~i~~~--~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~ 334 (379)
..+|.+.+... ...+..|-.+. ..|......+.. .....|.. .++.+++...++.++.+|+++++..
T Consensus 143 v~~~~v~v~~~---~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 143 VANGLVVVRTN---DGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred EECCEEEEECC---CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEe
Confidence 23444433221 23343343333 345533211110 01122332 2355565555789999999988754
No 73
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=69.79 E-value=5.7 Score=24.91 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=19.0
Q ss_pred eEEEEecCCCceecCCCCcccCC
Q 039590 120 RLILCNLETKESRTLPKRRVVFP 142 (379)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~ 142 (379)
.++++||.|++|.+++..|..+.
T Consensus 20 d~~~~~~~~~~W~~~~~~P~~R~ 42 (49)
T PF13415_consen 20 DVWVFDLDTNTWTRIGDLPPPRS 42 (49)
T ss_pred CEEEEECCCCEEEECCCCCCCcc
Confidence 58999999999999977665443
No 74
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=68.72 E-value=5.7 Score=38.16 Aligned_cols=146 Identities=10% Similarity=0.013 Sum_probs=81.2
Q ss_pred EEEEecCCCceecCCCCcccCCCc--ccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCccccc
Q 039590 121 LILCNLETKESRTLPKRRVVFPRF--CSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDL 198 (379)
Q Consensus 121 ~~V~NP~T~~~~~LP~~~~~~~~~--~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 198 (379)
+..--|.|-.|-++|+-....... ....+.-..+.+++.++.-.+..-.+. ......+++|+-+.+.|..+
T Consensus 231 ~i~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG-------~~~l~DFW~Y~v~e~~W~~i 303 (723)
T KOG2437|consen 231 YISQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDG-------TQDLADFWAYSVKENQWTCI 303 (723)
T ss_pred hhhcccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCccc-------chhHHHHHhhcCCcceeEEe
Confidence 344467788888887665321100 000122355677776655444333211 11133456999999999988
Q ss_pred ccccCCcceeeeccccEEECc--eEeeEeecCC-------CCccEEEEEECCCceEEEecCCCC-------CCCCCcEEE
Q 039590 199 KSFKSDHYVMSFWSGSLYVDG--VCYWLSRFRN-------NDHAVILSFHLGNDVFEEVQEPYI-------PQSEPTIIG 262 (379)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~G--~lywl~~~~~-------~~~~~i~~fD~~~e~~~~i~~P~~-------~~~~~~~l~ 262 (379)
..- +..|..+.+++.|.... +||.++..-. ....-+-.||..+..|..+..-.. ..++.+.+.
T Consensus 304 N~~-t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd 382 (723)
T KOG2437|consen 304 NRD-TEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVD 382 (723)
T ss_pred ecC-CCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEe
Confidence 721 12333334555555544 6777654321 334568999999999998864332 222222333
Q ss_pred EECCeEEEEEEc
Q 039590 263 VYNHSLCVLLSH 274 (379)
Q Consensus 263 ~~~G~L~l~~~~ 274 (379)
..+|-||+.++.
T Consensus 383 ~~k~~iyVfGGr 394 (723)
T KOG2437|consen 383 SEKHMIYVFGGR 394 (723)
T ss_pred cCcceEEEecCe
Confidence 445558888876
No 75
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=67.94 E-value=1.1e+02 Score=28.91 Aligned_cols=106 Identities=13% Similarity=0.163 Sum_probs=60.0
Q ss_pred cccEEECceEeeEeecCCCCccEEEEEECCCc--eEEEecCCCCCCCCCcEEEEECCeEEEEEEcCCCCEEEEEEEcC--
Q 039590 212 SGSLYVDGVCYWLSRFRNNDHAVILSFHLGND--VFEEVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKD-- 287 (379)
Q Consensus 212 ~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e--~~~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~-- 287 (379)
..++..+|.+|.....+ .+.++|..+. .|+. +.... ..++..+|.|++.... ..+...-.+.
T Consensus 250 ~sP~v~~~~vy~~~~~g-----~l~ald~~tG~~~W~~-~~~~~-----~~~~~~~~~vy~~~~~---g~l~ald~~tG~ 315 (394)
T PRK11138 250 TTPVVVGGVVYALAYNG-----NLVALDLRSGQIVWKR-EYGSV-----NDFAVDGGRIYLVDQN---DRVYALDTRGGV 315 (394)
T ss_pred CCcEEECCEEEEEEcCC-----eEEEEECCCCCEEEee-cCCCc-----cCcEEECCEEEEEcCC---CeEEEEECCCCc
Confidence 55678899999877554 8999998765 4654 11110 1234456666655432 2222222222
Q ss_pred CeEEEEEEECCCCCcccceEEeeCCeEEEEEeCCEEEEEeCCCCcEEE
Q 039590 288 KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRD 335 (379)
Q Consensus 288 ~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~~ 335 (379)
..|.... .. ......|+. .++.+++...++.++++|.++++...
T Consensus 316 ~~W~~~~-~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 316 ELWSQSD-LL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred EEEcccc-cC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 3454211 00 011223432 35778887778899999999988653
No 76
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=67.71 E-value=11 Score=22.13 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=18.9
Q ss_pred eEEEEEeCCEEEEEeCCCCcEEEe
Q 039590 313 AFFVVSTSGHLLLYDPNTQEMRDL 336 (379)
Q Consensus 313 ~il~~~~~~~l~~yd~~t~~~~~v 336 (379)
.|++...++.++++|.+|++...-
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWK 25 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEe
Confidence 456665588999999999997753
No 77
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=66.92 E-value=1.1e+02 Score=28.59 Aligned_cols=133 Identities=13% Similarity=0.075 Sum_probs=74.1
Q ss_pred EEEcCCCcccccccccCCcceeeeccc-cEEECceEeeEeecCCCCccEEEEEECCCce--EEEecCCCCCCCCCcEEEE
Q 039590 187 MYNLRTNSWRDLKSFKSDHYVMSFWSG-SLYVDGVCYWLSRFRNNDHAVILSFHLGNDV--FEEVQEPYIPQSEPTIIGV 263 (379)
Q Consensus 187 vyss~~~~W~~~~~~~~~~~~~~~~~~-~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~--~~~i~~P~~~~~~~~~l~~ 263 (379)
.....+..|...- .......+... .++.+|.+|.....+ .|.+||..+.+ |+.-... .......-+..
T Consensus 39 ~~~~g~~~W~~~~---~~~~~~~~~~~~~~~~dg~v~~~~~~G-----~i~A~d~~~g~~~W~~~~~~-~~~~~~~~~~~ 109 (370)
T COG1520 39 NNTSGTLLWSVSL---GSGGGGIYAGPAPADGDGTVYVGTRDG-----NIFALNPDTGLVKWSYPLLG-AVAQLSGPILG 109 (370)
T ss_pred cccCcceeeeeec---ccCccceEeccccEeeCCeEEEecCCC-----cEEEEeCCCCcEEecccCcC-cceeccCceEE
Confidence 4555667786432 01112223333 599999999986555 89999998876 7554443 11001112233
Q ss_pred ECCeEEEEEEcCCCCEEEEEEEcC----CeEEEEEEECCCCCcccceEEeeCCeEEEEEeCCEEEEEeCCCCcEEEe
Q 039590 264 YNHSLCVLLSHNIENYYDIWVMKD----KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRDL 336 (379)
Q Consensus 264 ~~G~L~l~~~~~~~~~i~iW~l~~----~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~~v 336 (379)
.+|+|++-... . .++.++. ..|.....- . ..+..+ .+..++.++....++.++..|.++++...-
T Consensus 110 ~~G~i~~g~~~--g---~~y~ld~~~G~~~W~~~~~~-~-~~~~~~-~v~~~~~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 110 SDGKIYVGSWD--G---KLYALDASTGTLVWSRNVGG-S-PYYASP-PVVGDGTVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred eCCeEEEeccc--c---eEEEEECCCCcEEEEEecCC-C-eEEecC-cEEcCcEEEEecCCCeEEEEEccCCcEEEE
Confidence 37776554433 2 5666665 456544322 0 111111 123345566655678999999998887543
No 78
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=66.82 E-value=26 Score=21.29 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=29.1
Q ss_pred cEEEEECCeEEEEEEcCC--CCEEEEEEEcC--CeEEEEEEEC
Q 039590 259 TIIGVYNHSLCVLLSHNI--ENYYDIWVMKD--KCWIKQLSVG 297 (379)
Q Consensus 259 ~~l~~~~G~L~l~~~~~~--~~~i~iW~l~~--~~W~~~~~i~ 297 (379)
...+..+++|++++.... ...-.+|..+- ..|+++..++
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 467899999999998743 44556666665 8999887664
No 79
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=62.43 E-value=1.6e+02 Score=30.82 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=25.9
Q ss_pred eccccEEECceEeeEeecCCCCccEEEEEECCC--ceEEE
Q 039590 210 FWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGN--DVFEE 247 (379)
Q Consensus 210 ~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~--e~~~~ 247 (379)
....++.++|.+|..+..+ .|+++|..+ +.|+.
T Consensus 186 ~e~TPlvvgg~lYv~t~~~-----~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 186 FQATPLKVGDTLYLCTPHN-----KVIALDAATGKEKWKF 220 (764)
T ss_pred cccCCEEECCEEEEECCCC-----eEEEEECCCCcEEEEE
Confidence 3567899999999987655 899999875 55764
No 80
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=60.87 E-value=24 Score=26.51 Aligned_cols=39 Identities=13% Similarity=0.203 Sum_probs=29.6
Q ss_pred eEEEEecCCC-ceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEE
Q 039590 120 RLILCNLETK-ESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIH 169 (379)
Q Consensus 120 ~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 169 (379)
.++++||.|+ .|...- +. .+.+.+-+|+..+.|+||.+.
T Consensus 12 ~V~~yd~~tKk~WvPs~--~~---------~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 12 HVFQIDPKTKKNWIPAS--KH---------AVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred EEEEECCCCcceeEeCC--CC---------ceeEEEEecCCCcEEEEEEec
Confidence 4899999996 787433 21 235788899999999999873
No 81
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=59.90 E-value=1.5e+02 Score=27.68 Aligned_cols=106 Identities=12% Similarity=0.115 Sum_probs=60.1
Q ss_pred cccEEECceEeeEeecCCCCccEEEEEECCCc--eEEEecCCCCCCCCCcEEEEECCeEEEEEEcCCCCEEEEEEEcC--
Q 039590 212 SGSLYVDGVCYWLSRFRNNDHAVILSFHLGND--VFEEVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKD-- 287 (379)
Q Consensus 212 ~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e--~~~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~-- 287 (379)
...+..+|.+|.....+ .+.++|..+. .|+.- .+.. ..++..+|.+++... ...+..+-.+.
T Consensus 235 ~~p~~~~~~vy~~~~~g-----~l~a~d~~tG~~~W~~~-~~~~-----~~p~~~~~~vyv~~~---~G~l~~~d~~tG~ 300 (377)
T TIGR03300 235 GDPVVDGGQVYAVSYQG-----RVAALDLRSGRVLWKRD-ASSY-----QGPAVDDNRLYVTDA---DGVVVALDRRSGS 300 (377)
T ss_pred CccEEECCEEEEEEcCC-----EEEEEECCCCcEEEeec-cCCc-----cCceEeCCEEEEECC---CCeEEEEECCCCc
Confidence 45577899999877655 8999998764 35431 1111 123345566655432 23344444433
Q ss_pred CeEEEEEEECCCCCcccceEEeeCCeEEEEEeCCEEEEEeCCCCcEEE
Q 039590 288 KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRD 335 (379)
Q Consensus 288 ~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~~ 335 (379)
..|.... +. ......|.. .++.+++...++.++++|.++++...
T Consensus 301 ~~W~~~~-~~-~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 301 ELWKNDE-LK-YRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred EEEcccc-cc-CCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 4565321 11 011223332 35677777778899999999887653
No 82
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=59.43 E-value=1.9e+02 Score=28.76 Aligned_cols=112 Identities=17% Similarity=0.213 Sum_probs=60.6
Q ss_pred ccccEEECceEeeEeecCCCCccEEEEEECCC--ceEEEe-cCCCCCCC---C---CcEEEEECCeEEEEEEcCCCCEEE
Q 039590 211 WSGSLYVDGVCYWLSRFRNNDHAVILSFHLGN--DVFEEV-QEPYIPQS---E---PTIIGVYNHSLCVLLSHNIENYYD 281 (379)
Q Consensus 211 ~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~--e~~~~i-~~P~~~~~---~---~~~l~~~~G~L~l~~~~~~~~~i~ 281 (379)
....++.+|.+|..+..+ .|.++|..+ +.|+.- ..|..... . ...++..+|++++.... . .
T Consensus 62 ~stPvv~~g~vyv~s~~g-----~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d--g---~ 131 (527)
T TIGR03075 62 ESQPLVVDGVMYVTTSYS-----RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD--A---R 131 (527)
T ss_pred ccCCEEECCEEEEECCCC-----cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC--C---E
Confidence 456788999999976654 799999875 457643 33322110 0 01234556666654332 1 2
Q ss_pred EEEEcC----CeEEEEEEECCCC--Cc-ccceEEeeCCeEEEEEe------CCEEEEEeCCCCcEEE
Q 039590 282 IWVMKD----KCWIKQLSVGPFV--GV-QRPLGFWKKGAFFVVST------SGHLLLYDPNTQEMRD 335 (379)
Q Consensus 282 iW~l~~----~~W~~~~~i~~~~--~~-~~~~~~~~~~~il~~~~------~~~l~~yd~~t~~~~~ 335 (379)
+..|+- ..|..... +... .+ ..|+.. ++.|++... .+.+++||.+|++...
T Consensus 132 l~ALDa~TGk~~W~~~~~-~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 132 LVALDAKTGKVVWSKKNG-DYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred EEEEECCCCCEEeecccc-cccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeE
Confidence 344433 45654321 1110 11 233332 455555432 4689999999998654
No 83
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=58.37 E-value=1.9e+02 Score=28.38 Aligned_cols=102 Identities=10% Similarity=0.150 Sum_probs=64.1
Q ss_pred EEEEEEcCCCcccccccccCCcceeee-ccccEEECceEeeEeecC----C-----------CCccEEEEEECCCceEEE
Q 039590 184 HVAMYNLRTNSWRDLKSFKSDHYVMSF-WSGSLYVDGVCYWLSRFR----N-----------NDHAVILSFHLGNDVFEE 247 (379)
Q Consensus 184 ~~~vyss~~~~W~~~~~~~~~~~~~~~-~~~~v~~~G~lywl~~~~----~-----------~~~~~i~~fD~~~e~~~~ 247 (379)
.++-.++++-.|..... ...+|++- .++++.+++++|...+-- . .....+-++|+.+..|..
T Consensus 231 DLW~Ldl~Tl~W~kp~~--~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~t 308 (830)
T KOG4152|consen 231 DLWTLDLDTLTWNKPSL--SGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWET 308 (830)
T ss_pred ceeEEecceeecccccc--cCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheee
Confidence 45578888999987761 12334433 678888999998765421 0 223578899999999987
Q ss_pred ecCCCCCC------CCCcEEEEECCeEEEEEEcC--------CCCEEEEEEEcC
Q 039590 248 VQEPYIPQ------SEPTIIGVYNHSLCVLLSHN--------IENYYDIWVMKD 287 (379)
Q Consensus 248 i~~P~~~~------~~~~~l~~~~G~L~l~~~~~--------~~~~i~iW~l~~ 287 (379)
+-+-...+ .-+..-+..+.+|++-...+ .-..-++|.|+.
T Consensus 309 l~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdT 362 (830)
T KOG4152|consen 309 LLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDT 362 (830)
T ss_pred eeeccccccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcc
Confidence 65322110 11125567788888887764 233456777764
No 84
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=56.14 E-value=48 Score=25.70 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=34.5
Q ss_pred CCeEEEEEe-----CCEEEEEeCCCCcEEEeEEe--ecc---cee-EEEeeeeeecCCCC
Q 039590 311 KGAFFVVST-----SGHLLLYDPNTQEMRDLGVT--CFD---VSV-HMYKESLIRLKGGD 359 (379)
Q Consensus 311 ~~~il~~~~-----~~~l~~yd~~t~~~~~v~~~--~~~---~~~-~~y~~sl~~~~~~~ 359 (379)
+|-++.... ...+++||+++++++.+... ... ... +.|..+|..+....
T Consensus 5 nGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~ 64 (129)
T PF08268_consen 5 NGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYND 64 (129)
T ss_pred CcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecC
Confidence 566666543 46899999999999998874 221 223 88888887765543
No 85
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=56.12 E-value=1.5e+02 Score=26.46 Aligned_cols=137 Identities=10% Similarity=0.058 Sum_probs=71.9
Q ss_pred eEEEEEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecCCCCccEEEEEECCCce-EEEecCCCCCCCCCcEE
Q 039590 183 AHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDV-FEEVQEPYIPQSEPTII 261 (379)
Q Consensus 183 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~-~~~i~~P~~~~~~~~~l 261 (379)
..+..|++.+++=.... .+++..+.-....+++.+|-++... ...+.||..+-+ -..++.|. +++ -|
T Consensus 68 S~l~~~d~~tg~~~~~~----~l~~~~FgEGit~~~d~l~qLTWk~----~~~f~yd~~tl~~~~~~~y~~--EGW--GL 135 (264)
T PF05096_consen 68 SSLRKVDLETGKVLQSV----PLPPRYFGEGITILGDKLYQLTWKE----GTGFVYDPNTLKKIGTFPYPG--EGW--GL 135 (264)
T ss_dssp EEEEEEETTTSSEEEEE----E-TTT--EEEEEEETTEEEEEESSS----SEEEEEETTTTEEEEEEE-SS--S----EE
T ss_pred EEEEEEECCCCcEEEEE----ECCccccceeEEEECCEEEEEEecC----CeEEEEccccceEEEEEecCC--cce--EE
Confidence 34448888887643333 2323223444577899999999886 688999997532 23444542 233 56
Q ss_pred EEECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEE-----eeCCeEEEEEe-CCEEEEEeCCCCcEEE
Q 039590 262 GVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGF-----WKKGAFFVVST-SGHLLLYDPNTQEMRD 335 (379)
Q Consensus 262 ~~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~-----~~~~~il~~~~-~~~l~~yd~~t~~~~~ 335 (379)
+..+..|.+.... =.|+.++......+.+|.-.. -..|+.. +-+|.|+--.. .+.++..|++|+++..
T Consensus 136 t~dg~~Li~SDGS-----~~L~~~dP~~f~~~~~i~V~~-~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 136 TSDGKRLIMSDGS-----SRLYFLDPETFKEVRTIQVTD-NGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp EECSSCEEEE-SS-----SEEEEE-TTT-SEEEEEE-EE-TTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEE
T ss_pred EcCCCEEEEECCc-----cceEEECCcccceEEEEEEEE-CCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEE
Confidence 6555556654443 234445543333333333110 0112111 12566655543 7899999999999886
Q ss_pred eE
Q 039590 336 LG 337 (379)
Q Consensus 336 v~ 337 (379)
.-
T Consensus 210 ~i 211 (264)
T PF05096_consen 210 WI 211 (264)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 86
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=55.07 E-value=1.8e+02 Score=27.07 Aligned_cols=127 Identities=13% Similarity=0.110 Sum_probs=70.3
Q ss_pred ecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeeccc--ccceeeeE
Q 039590 107 FDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKR--QEIYEFAH 184 (379)
Q Consensus 107 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~--~~~~~~~~ 184 (379)
.+.-|+..+.. ....|+++.|+....+|.+....... ..+.. .+. +..+........ .......|
T Consensus 75 ~gskIv~~d~~-~~t~vyDt~t~av~~~P~l~~pk~~p-----isv~V-----G~~--LY~m~~~~~~~~~~~~~~~~FE 141 (342)
T PF07893_consen 75 HGSKIVAVDQS-GRTLVYDTDTRAVATGPRLHSPKRCP-----ISVSV-----GDK--LYAMDRSPFPEPAGRPDFPCFE 141 (342)
T ss_pred cCCeEEEEcCC-CCeEEEECCCCeEeccCCCCCCCcce-----EEEEe-----CCe--EEEeeccCccccccCccceeEE
Confidence 34445544443 34899999999999999866533221 11222 122 444432221110 00001455
Q ss_pred EEEEEc--------CCCcccccccccCCcceeee---------ccccEEECceEeeEeecCCCCccEEEEEECCCceEEE
Q 039590 185 VAMYNL--------RTNSWRDLKSFKSDHYVMSF---------WSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEE 247 (379)
Q Consensus 185 ~~vyss--------~~~~W~~~~~~~~~~~~~~~---------~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~ 247 (379)
+.+|+. ++-+|+.++ . ||+.. ...+|+ +|.--|++..+. ...-.+||..+.+|+.
T Consensus 142 ~l~~~~~~~~~~~~~~w~W~~LP----~-PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~--~~GTysfDt~~~~W~~ 213 (342)
T PF07893_consen 142 ALVYRPPPDDPSPEESWSWRSLP----P-PPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGR--RWGTYSFDTESHEWRK 213 (342)
T ss_pred EeccccccccccCCCcceEEcCC----C-CCccccCCcccceEEEEEEe-cCCeEEEEecCC--ceEEEEEEcCCcceee
Confidence 445542 223677776 2 33322 234566 898888876641 1369999999999987
Q ss_pred e---cCCCCC
Q 039590 248 V---QEPYIP 254 (379)
Q Consensus 248 i---~~P~~~ 254 (379)
. .||...
T Consensus 214 ~GdW~LPF~G 223 (342)
T PF07893_consen 214 HGDWMLPFHG 223 (342)
T ss_pred ccceecCcCC
Confidence 6 578654
No 87
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=49.49 E-value=1.6e+02 Score=30.50 Aligned_cols=96 Identities=18% Similarity=0.287 Sum_probs=54.9
Q ss_pred EEEEEECCCceEE---EecCCCCCCCCCcEEEEECCeEEEEEEcCCCCEEEEEEEcC--------CeEEEEEEECCCCCc
Q 039590 234 VILSFHLGNDVFE---EVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKD--------KCWIKQLSVGPFVGV 302 (379)
Q Consensus 234 ~i~~fD~~~e~~~---~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~--------~~W~~~~~i~~~~~~ 302 (379)
+.-.||.....|. .|..|.+...-...+...--.-..+... .+..+.||++.+ ..|.....=.....-
T Consensus 433 KFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~-~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~ 511 (792)
T KOG1963|consen 433 KFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS-VDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTP 511 (792)
T ss_pred EEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEec-cCCeEEEEEEecccccCcCccceEEeeeeccccCc
Confidence 3445566666664 3566655411000111111111222222 378899999954 679876522221111
Q ss_pred ccceEEeeCCeEEEEEeCCEEEEEeCCC
Q 039590 303 QRPLGFWKKGAFFVVSTSGHLLLYDPNT 330 (379)
Q Consensus 303 ~~~~~~~~~~~il~~~~~~~l~~yd~~t 330 (379)
....++.++|.++....++.+..||..+
T Consensus 512 i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 512 ITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred ccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 2335567789999999999999999988
No 88
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=49.32 E-value=82 Score=23.96 Aligned_cols=42 Identities=7% Similarity=-0.071 Sum_probs=29.3
Q ss_pred eEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEE
Q 039590 120 RLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIH 169 (379)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 169 (379)
.+.+.||.|+.|..+-+.+. . .+.+.+.+++..+.|.|+...
T Consensus 10 ~Vm~~d~~tk~W~P~~~~~~-~-------ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 10 SVMVYDDSNKKWVPAGGGSQ-G-------FSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EeeEEcCCCCcEEcCCCCCC-C-------cceEEEEEcCCCCEEEEEEee
Confidence 47889999999775433211 1 224777888888899999864
No 89
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=48.55 E-value=83 Score=22.84 Aligned_cols=18 Identities=50% Similarity=0.722 Sum_probs=15.4
Q ss_pred CCEEEEEeCCCCcEEEeE
Q 039590 320 SGHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 320 ~~~l~~yd~~t~~~~~v~ 337 (379)
.++++.||++|++.+.+.
T Consensus 36 ~GRll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLL 53 (89)
T ss_dssp -EEEEEEETTTTEEEEEE
T ss_pred CcCEEEEECCCCeEEEeh
Confidence 478999999999998766
No 90
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=44.77 E-value=2.6e+02 Score=25.93 Aligned_cols=150 Identities=13% Similarity=0.098 Sum_probs=80.6
Q ss_pred EEEEEcCCCcccccccccCCcceeee-ccccEEECceEeeEeecCCCCccEEEEEECCCceEEEec----CCCCCCCC--
Q 039590 185 VAMYNLRTNSWRDLKSFKSDHYVMSF-WSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQ----EPYIPQSE-- 257 (379)
Q Consensus 185 ~~vyss~~~~W~~~~~~~~~~~~~~~-~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~----~P~~~~~~-- 257 (379)
+.+|++..+.-...... ..++..- ++=...=||.+-.+..+- .+.-.++.+|....+++.++ +|......
T Consensus 169 i~~y~~~dg~L~~~~~~--~v~~G~GPRHi~FHpn~k~aY~v~EL-~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 169 IFLYDLDDGKLTPADPA--EVKPGAGPRHIVFHPNGKYAYLVNEL-NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred EEEEEcccCcccccccc--ccCCCCCcceEEEcCCCcEEEEEecc-CCEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence 44999988777665521 1111111 222233366554444332 33445566666668888765 56655222
Q ss_pred CcEEE-EECCeEEEEEEcCCCCEEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEEEe--CCEEEEE--eCCC
Q 039590 258 PTIIG-VYNHSLCVLLSHNIENYYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST--SGHLLLY--DPNT 330 (379)
Q Consensus 258 ~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~--~~~l~~y--d~~t 330 (379)
...|. .-+|+..+++-. ..+.|.+...++ ..=..+...+..-...+-+.+..+|++++... ++.+.+| |.+|
T Consensus 246 ~aaIhis~dGrFLYasNR-g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 246 AAAIHISPDGRFLYASNR-GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred eeEEEECCCCCEEEEecC-CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 12333 456665444433 356677776666 33222222221112356677777888877754 4455555 8899
Q ss_pred CcEEEeEE
Q 039590 331 QEMRDLGV 338 (379)
Q Consensus 331 ~~~~~v~~ 338 (379)
++++.+.-
T Consensus 325 G~L~~~~~ 332 (346)
T COG2706 325 GRLTLLGR 332 (346)
T ss_pred ceEEeccc
Confidence 99988773
No 91
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=44.28 E-value=88 Score=31.32 Aligned_cols=109 Identities=14% Similarity=0.169 Sum_probs=63.4
Q ss_pred ceEeeEeecCCCCccEEEEEECCCceEE----EecCCCCCCCCCcEEEEECCeEEEEEEcCCCCEEEEEEEcCCeEEEE-
Q 039590 219 GVCYWLSRFRNNDHAVILSFHLGNDVFE----EVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQ- 293 (379)
Q Consensus 219 G~lywl~~~~~~~~~~i~~fD~~~e~~~----~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~- 293 (379)
-.||..... ..|.-||.....|+ .+..|.....-.+.|.-.-|..+++... .+..+..|-++...=.-.
T Consensus 65 HiLavadE~-----G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsas-GDsT~r~Wdvk~s~l~G~~ 138 (720)
T KOG0321|consen 65 HILAVADED-----GGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSAS-GDSTIRPWDVKTSRLVGGR 138 (720)
T ss_pred ceEEEecCC-----CceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEcc-CCceeeeeeeccceeecce
Confidence 345554433 48999999988887 1222333222234566556889998887 678999999997211111
Q ss_pred EEECCCCCcccceEEeeCCeEEEEEe--CCEEEEEeCCCCcEE
Q 039590 294 LSVGPFVGVQRPLGFWKKGAFFVVST--SGHLLLYDPNTQEMR 334 (379)
Q Consensus 294 ~~i~~~~~~~~~~~~~~~~~il~~~~--~~~l~~yd~~t~~~~ 334 (379)
.-++.. +-..-+|+...+..+|+.+ ++.+++||.+.+.+.
T Consensus 139 ~~~GH~-~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d 180 (720)
T KOG0321|consen 139 LNLGHT-GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVD 180 (720)
T ss_pred eecccc-cccchhhhccCCCcceeeccCCCcEEEEEEeccchh
Confidence 112211 1122344545555555543 778888988877744
No 92
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=43.59 E-value=56 Score=29.50 Aligned_cols=106 Identities=10% Similarity=0.164 Sum_probs=59.7
Q ss_pred EEEEEEcCCCccccccc-ccCCcceeee-ccccEEECceEeeEeecCCCCccEEEEEECCCceEEEecC-CC-CCCCCCc
Q 039590 184 HVAMYNLRTNSWRDLKS-FKSDHYVMSF-WSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQE-PY-IPQSEPT 259 (379)
Q Consensus 184 ~~~vyss~~~~W~~~~~-~~~~~~~~~~-~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~-P~-~~~~~~~ 259 (379)
.+++|+..+.+|..... ..-......+ ...-+++.|.+-.-.. ....+..||+.+.+|..+.. .. .....-.
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~----~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGT----NSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCC----CceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 46699999999998871 1111112223 4566777776654331 24689999999999987765 21 1111111
Q ss_pred --EEEEECC-eEEEEEEc-CCCCEEEEEEEcCCeEEEEEE
Q 039590 260 --IIGVYNH-SLCVLLSH-NIENYYDIWVMKDKCWIKQLS 295 (379)
Q Consensus 260 --~l~~~~G-~L~l~~~~-~~~~~i~iW~l~~~~W~~~~~ 295 (379)
.+...++ .+.+.+.. .....+.-| +..+|..+-.
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccc
Confidence 2222233 45555443 233445555 4478887654
No 93
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=42.71 E-value=3.3e+02 Score=26.54 Aligned_cols=141 Identities=13% Similarity=0.060 Sum_probs=0.0
Q ss_pred EEEEEcCCCcccccc-cccCC--------cceeeeccccEEECceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCC
Q 039590 185 VAMYNLRTNSWRDLK-SFKSD--------HYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQ 255 (379)
Q Consensus 185 ~~vyss~~~~W~~~~-~~~~~--------~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~ 255 (379)
+++|+..+++=+.++ +.|.+ ..|..+...-..++|-++-+.+++ ....++....---.+.-+....
T Consensus 289 IylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG-----kaFi~~~~~~~~iqv~~~~~Vr 363 (668)
T COG4946 289 IYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG-----KAFIMRPWDGYSIQVGKKGGVR 363 (668)
T ss_pred EEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC-----cEEEECCCCCeeEEcCCCCceE
Q ss_pred CCCcEEEEECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCe-EEEEEeCCEEEEEeCCCCcEE
Q 039590 256 SEPTIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGA-FFVVSTSGHLLLYDPNTQEMR 334 (379)
Q Consensus 256 ~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~~~~l~~yd~~t~~~~ 334 (379)
.. ++..... .++....+...+.|.-.+. .++.+|...-+....+.+..+|+ +++.+...++.++|++++..+
T Consensus 364 Y~--r~~~~~e--~~vigt~dgD~l~iyd~~~---~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~ 436 (668)
T COG4946 364 YR--RIQVDPE--GDVIGTNDGDKLGIYDKDG---GEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR 436 (668)
T ss_pred EE--EEccCCc--ceEEeccCCceEEEEecCC---ceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Q ss_pred EeE
Q 039590 335 DLG 337 (379)
Q Consensus 335 ~v~ 337 (379)
.+.
T Consensus 437 ~id 439 (668)
T COG4946 437 LID 439 (668)
T ss_pred Eec
No 94
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=42.48 E-value=32 Score=33.38 Aligned_cols=127 Identities=11% Similarity=0.082 Sum_probs=76.3
Q ss_pred ccccEEECc--eEeeEeecCC-CCccEEEEEECCCceEEEec----CCCCCCCCCcEEEEECCeEEEEEEcC-------C
Q 039590 211 WSGSLYVDG--VCYWLSRFRN-NDHAVILSFHLGNDVFEEVQ----EPYIPQSEPTIIGVYNHSLCVLLSHN-------I 276 (379)
Q Consensus 211 ~~~~v~~~G--~lywl~~~~~-~~~~~i~~fD~~~e~~~~i~----~P~~~~~~~~~l~~~~G~L~l~~~~~-------~ 276 (379)
.+..|+-.| ++|.-++-.. ..-.-.-+|+.+.+.|..+. .|.....+++.+-....+|++.+-.. .
T Consensus 263 GHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~ 342 (723)
T KOG2437|consen 263 GHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSK 342 (723)
T ss_pred cceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhcccccccccc
Confidence 345577777 8887665431 11223567888999999875 45544444433335666787776442 3
Q ss_pred CCEEEEEEEcC--CeEEEEEEEC---CCC--CcccceEEeeCCeEEEEEe----------CCEEEEEeCCCCcEEEeE
Q 039590 277 ENYYDIWVMKD--KCWIKQLSVG---PFV--GVQRPLGFWKKGAFFVVST----------SGHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 277 ~~~i~iW~l~~--~~W~~~~~i~---~~~--~~~~~~~~~~~~~il~~~~----------~~~l~~yd~~t~~~~~v~ 337 (379)
...-++|+.+- ..|..+--=. ..| -+.+-+++..+..++.+.+ -..+++||.+...|+.+.
T Consensus 343 s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~ 420 (723)
T KOG2437|consen 343 SLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLR 420 (723)
T ss_pred ccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHHH
Confidence 45568999997 7898653211 112 1234455554444444432 257999999998888554
No 95
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=41.57 E-value=2.7e+02 Score=25.28 Aligned_cols=116 Identities=10% Similarity=0.080 Sum_probs=62.6
Q ss_pred ECceEeeEeecCCCCccEEEEEECC--CceEEE---ec-CCCCC--CCCCcEEE-EECCeEEEEEEcCCCCEEEEEEEcC
Q 039590 217 VDGVCYWLSRFRNNDHAVILSFHLG--NDVFEE---VQ-EPYIP--QSEPTIIG-VYNHSLCVLLSHNIENYYDIWVMKD 287 (379)
Q Consensus 217 ~~G~lywl~~~~~~~~~~i~~fD~~--~e~~~~---i~-~P~~~--~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~ 287 (379)
-+|...+..... ...|.+||+. +.+++. +. .|... ..+...+. .-+|+..++.. .....+.+|.++.
T Consensus 184 pdg~~lyv~~~~---~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~-~~~~~I~v~~i~~ 259 (330)
T PRK11028 184 PNQQYAYCVNEL---NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD-RTASLISVFSVSE 259 (330)
T ss_pred CCCCEEEEEecC---CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec-CCCCeEEEEEEeC
Confidence 355544444432 3578888876 344433 32 34332 11211232 34565444432 2467899998875
Q ss_pred --CeEEEEEEECCCCCcccceEEeeCCeEEEEEe--CCEEEEEeC--CCCcEEEeE
Q 039590 288 --KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST--SGHLLLYDP--NTQEMRDLG 337 (379)
Q Consensus 288 --~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~--~~~l~~yd~--~t~~~~~v~ 337 (379)
..+..+..++.. ...+-+.+..+|+.++... ++.+.+|+. +++.++.+.
T Consensus 260 ~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 260 DGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELG 314 (330)
T ss_pred CCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence 456655555532 1233456667787666543 566777754 667777765
No 96
>PLN02772 guanylate kinase
Probab=41.36 E-value=1.7e+02 Score=27.82 Aligned_cols=72 Identities=10% Similarity=0.171 Sum_probs=48.8
Q ss_pred EEEEECCeEEEEEEcCCC--CEEEEEEEcC--CeEEEEEEEC--CCCCcccceEEeeCCeEEEEEe----CCEEEEEeCC
Q 039590 260 IIGVYNHSLCVLLSHNIE--NYYDIWVMKD--KCWIKQLSVG--PFVGVQRPLGFWKKGAFFVVST----SGHLLLYDPN 329 (379)
Q Consensus 260 ~l~~~~G~L~l~~~~~~~--~~i~iW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~----~~~l~~yd~~ 329 (379)
..++.++++++++..... ....+|+++. ..|+.-...+ |.++-.+..++.+++.||++.+ +..+....+.
T Consensus 29 tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~~~~w~l~~~ 108 (398)
T PLN02772 29 TSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDSIWFLEVD 108 (398)
T ss_pred eeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCccceEEEEcC
Confidence 567899999999976432 5689999998 8998765544 3334455666677777777754 3445555555
Q ss_pred CC
Q 039590 330 TQ 331 (379)
Q Consensus 330 t~ 331 (379)
|.
T Consensus 109 t~ 110 (398)
T PLN02772 109 TP 110 (398)
T ss_pred CH
Confidence 53
No 97
>PF13013 F-box-like_2: F-box-like domain
Probab=40.63 E-value=12 Score=28.34 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHhcCCcchhhhheeccc
Q 039590 7 NFPEDVMIEVLSRLSVKSLLRFKCVCR 33 (379)
Q Consensus 7 ~LP~Dll~~IL~rLP~~sl~r~r~VcK 33 (379)
.||+||++.|+..-...++...-..|+
T Consensus 24 DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 24 DLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 599999999999999888866555555
No 98
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=40.52 E-value=3.4e+02 Score=26.06 Aligned_cols=121 Identities=12% Similarity=0.202 Sum_probs=68.7
Q ss_pred eeEEEEEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecCCCCccEEEEEECCCc-eEEEecCCCCCCCCCcE
Q 039590 182 FAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGND-VFEEVQEPYIPQSEPTI 260 (379)
Q Consensus 182 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e-~~~~i~~P~~~~~~~~~ 260 (379)
...+.||+++++. .+..||. ..-.-.++.+...=||+....+ ...|..+|++.. .|..++++... +..
T Consensus 368 d~~vkiwdlks~~--~~a~Fpg----ht~~vk~i~FsENGY~Lat~ad--d~~V~lwDLRKl~n~kt~~l~~~~---~v~ 436 (506)
T KOG0289|consen 368 DGVVKIWDLKSQT--NVAKFPG----HTGPVKAISFSENGYWLATAAD--DGSVKLWDLRKLKNFKTIQLDEKK---EVN 436 (506)
T ss_pred CceEEEEEcCCcc--ccccCCC----CCCceeEEEeccCceEEEEEec--CCeEEEEEehhhcccceeeccccc---cce
Confidence 3455588887766 5554442 1112234555555588876652 345999999865 47778887653 111
Q ss_pred EE--EECCeEEEEEEcCCCCEEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEE
Q 039590 261 IG--VYNHSLCVLLSHNIENYYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVV 317 (379)
Q Consensus 261 l~--~~~G~L~l~~~~~~~~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~ 317 (379)
-. ...|....+. ...+.|+..+. .+|.+........+....+.+.++..++..
T Consensus 437 s~~fD~SGt~L~~~----g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s 493 (506)
T KOG0289|consen 437 SLSFDQSGTYLGIA----GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLAS 493 (506)
T ss_pred eEEEcCCCCeEEee----cceeEEEEEecccccceeeehhhhcccccceeeecccceEEee
Confidence 11 2334444444 34677887776 899998776544344444445444344433
No 99
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=39.49 E-value=3e+02 Score=25.06 Aligned_cols=95 Identities=9% Similarity=0.025 Sum_probs=52.5
Q ss_pred cEEEEEECCC-ceEEEecCCCCCCCCCcEEE-EECCeEEEEEEcCCCCEEEEEEEcC-CeEEEEEEECCCCCcccceEEe
Q 039590 233 AVILSFHLGN-DVFEEVQEPYIPQSEPTIIG-VYNHSLCVLLSHNIENYYDIWVMKD-KCWIKQLSVGPFVGVQRPLGFW 309 (379)
Q Consensus 233 ~~i~~fD~~~-e~~~~i~~P~~~~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~ 309 (379)
..|..||+.+ .+...++.-... .....+. .-+|+..++... ....+.+|..++ ..+.....+... .-...+.+.
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~~-~~~~~l~~spd~~~lyv~~~-~~~~i~~~~~~~~g~l~~~~~~~~~-~~p~~i~~~ 88 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDVP-GQVQPMVISPDKRHLYVGVR-PEFRVLSYRIADDGALTFAAESPLP-GSPTHISTD 88 (330)
T ss_pred CCEEEEEECCCCceeeeeEEecC-CCCccEEECCCCCEEEEEEC-CCCcEEEEEECCCCceEEeeeecCC-CCceEEEEC
Confidence 5788888853 455444321111 1111333 335664444333 367888898875 566666555422 112345556
Q ss_pred eCCeEEEEEe--CCEEEEEeCCC
Q 039590 310 KKGAFFVVST--SGHLLLYDPNT 330 (379)
Q Consensus 310 ~~~~il~~~~--~~~l~~yd~~t 330 (379)
.+++.++... ++.+.+||+++
T Consensus 89 ~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 89 HQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CCCCEEEEEEcCCCeEEEEEECC
Confidence 6777666543 67899998864
No 100
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=39.32 E-value=2.7e+02 Score=24.51 Aligned_cols=125 Identities=15% Similarity=0.144 Sum_probs=68.7
Q ss_pred EEEcCCC----cccccccccCCcceeee-ccccEEECceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEE
Q 039590 187 MYNLRTN----SWRDLKSFKSDHYVMSF-WSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTII 261 (379)
Q Consensus 187 vyss~~~----~W~~~~~~~~~~~~~~~-~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l 261 (379)
+++..|+ +||... .+.....+ ..++|.+.|.+ ...+-++|..+..++.|+.-.... ....-
T Consensus 85 vwDV~TGkv~Rr~rgH~---aqVNtV~fNeesSVv~Sgsf----------D~s~r~wDCRS~s~ePiQildea~-D~V~S 150 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHL---AQVNTVRFNEESSVVASGSF----------DSSVRLWDCRSRSFEPIQILDEAK-DGVSS 150 (307)
T ss_pred EEEcccCeeeeeccccc---ceeeEEEecCcceEEEeccc----------cceeEEEEcccCCCCccchhhhhc-CceeE
Confidence 8888875 677655 24444445 55667766653 248999999999999888754441 11233
Q ss_pred EEECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccc---eEEeeCCeEEEEE-eCCEEEEEeCCCCcEE
Q 039590 262 GVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRP---LGFWKKGAFFVVS-TSGHLLLYDPNTQEMR 334 (379)
Q Consensus 262 ~~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~---~~~~~~~~il~~~-~~~~l~~yd~~t~~~~ 334 (379)
+...+...+.+.. +..+..+-+.... + ....+..| +.+.+++...+.. -+.-+-..|-+|+++-
T Consensus 151 i~v~~heIvaGS~--DGtvRtydiR~G~------l-~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL 218 (307)
T KOG0316|consen 151 IDVAEHEIVAGSV--DGTVRTYDIRKGT------L-SSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL 218 (307)
T ss_pred EEecccEEEeecc--CCcEEEEEeecce------e-ehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHH
Confidence 3455555555544 3344444333210 0 00122333 3445566554443 3666777777776654
No 101
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=38.29 E-value=1.3e+02 Score=27.05 Aligned_cols=71 Identities=15% Similarity=0.306 Sum_probs=48.4
Q ss_pred EECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEEEEeCCEEEEEeCCCCcE-EEeEE
Q 039590 263 VYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEM-RDLGV 338 (379)
Q Consensus 263 ~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~-~~v~~ 338 (379)
.-||.||..+.. +.++-+|-|.+.+ ..+.++... ....++|..+...+....+..+-.||+++++. +++..
T Consensus 201 SpDGslcasGgk--dg~~~LwdL~~~k--~lysl~a~~-~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 201 SPDGSLCASGGK--DGEAMLWDLNEGK--NLYSLEAFD-IVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKL 272 (315)
T ss_pred CCCCCEEecCCC--CceEEEEEccCCc--eeEeccCCC-eEeeEEecCCceeEeeccCCceEEEeccchhhhhhccc
Confidence 468999998776 7899999999721 145555332 23445666655556666677899999999874 44553
No 102
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=36.76 E-value=2.3e+02 Score=25.27 Aligned_cols=64 Identities=16% Similarity=0.104 Sum_probs=38.8
Q ss_pred cccEEECceEeeEeecCC--CCccEEEEEECCCceEEEecCCCCCCCCCcEEEEECCeEEEEEEcC
Q 039590 212 SGSLYVDGVCYWLSRFRN--NDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGVYNHSLCVLLSHN 275 (379)
Q Consensus 212 ~~~v~~~G~lywl~~~~~--~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~ 275 (379)
.+--+.+|+||..+.... .-...+..-+...+.|+.+++|........-.+-.++.|+++....
T Consensus 194 PCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgsER 259 (367)
T PF12217_consen 194 PCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGSER 259 (367)
T ss_dssp EEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE-S
T ss_pred chhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEeccc
Confidence 344678999999876543 2234677778888999999999766333334556788899998763
No 103
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=36.62 E-value=56 Score=31.03 Aligned_cols=142 Identities=15% Similarity=0.086 Sum_probs=73.2
Q ss_pred eecceEEEecC----CCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeeccccccee
Q 039590 106 PFDGIFCIHGP----TNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYE 181 (379)
Q Consensus 106 s~~GLl~~~~~----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~ 181 (379)
--+.||++.-. ..-+++|+|..|++..++.........-.......+.-||--.++++|++-.... ..
T Consensus 236 ~vG~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPedqGiIFpgGYyLqtGe~K~Fd~~~~--------~l 307 (448)
T PF12458_consen 236 RVGNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPEDQGIIFPGGYYLQTGEYKTFDTDMD--------GL 307 (448)
T ss_pred ecCcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCccCceEccCceEeccCCceeecccCC--------Cc
Confidence 45677888822 2227999999999999988665432111111122233344444555554443100 00
Q ss_pred eeEEEEEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEE
Q 039590 182 FAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTII 261 (379)
Q Consensus 182 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l 261 (379)
..+ |.+. +---...||..-... .....++.||+-..+ +..|-.+. + .-
T Consensus 308 ~F~-----------r~vr--------------SPNGEDvLYvF~~~~-~g~~~Ll~YN~I~k~---v~tPi~ch--G-~a 355 (448)
T PF12458_consen 308 EFE-----------RKVR--------------SPNGEDVLYVFYARE-EGRYLLLPYNLIRKE---VATPIICH--G-YA 355 (448)
T ss_pred eEE-----------EEec--------------CCCCceEEEEEEECC-CCcEEEEechhhhhh---hcCCeecc--c-ee
Confidence 001 1111 000122455554333 345678888877644 33443332 2 22
Q ss_pred EEECCeEEEEEEcC----CCCEEEEEEEcC
Q 039590 262 GVYNHSLCVLLSHN----IENYYDIWVMKD 287 (379)
Q Consensus 262 ~~~~G~L~l~~~~~----~~~~i~iW~l~~ 287 (379)
.--+|.|+++.... ....|+||..--
T Consensus 356 lf~DG~l~~fra~~~EptrvHp~QiWqTPf 385 (448)
T PF12458_consen 356 LFEDGRLVYFRAEGDEPTRVHPMQIWQTPF 385 (448)
T ss_pred EecCCEEEEEecCCCCcceeccceeecCCc
Confidence 35689999988762 234688897753
No 104
>PF13854 Kelch_5: Kelch motif
Probab=35.97 E-value=72 Score=19.05 Aligned_cols=34 Identities=9% Similarity=0.182 Sum_probs=22.1
Q ss_pred eeccccEEECceEeeEeecCC---CCccEEEEEECCC
Q 039590 209 SFWSGSLYVDGVCYWLSRFRN---NDHAVILSFHLGN 242 (379)
Q Consensus 209 ~~~~~~v~~~G~lywl~~~~~---~~~~~i~~fD~~~ 242 (379)
+..++++.+++.+|...+... .....+..+|+.+
T Consensus 5 R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 5 RYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred ccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 346778888999999887651 1223466666654
No 105
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=35.90 E-value=2.7e+02 Score=23.48 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=16.9
Q ss_pred CCEEEEEeCCCCcEEEeEE
Q 039590 320 SGHLLLYDPNTQEMRDLGV 338 (379)
Q Consensus 320 ~~~l~~yd~~t~~~~~v~~ 338 (379)
.+.|+.||+.|++++.+.-
T Consensus 139 GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 139 GGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred CCeEEEEEccCCceeEeee
Confidence 6799999999999998874
No 106
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=35.67 E-value=2.2e+02 Score=25.89 Aligned_cols=59 Identities=10% Similarity=0.246 Sum_probs=36.9
Q ss_pred CCEEEEEEEcC-CeEEEEEEECCCCCcccc---eEEeeCCeEEEEE-eCCEEEEEeCCCCcEEEeEEe
Q 039590 277 ENYYDIWVMKD-KCWIKQLSVGPFVGVQRP---LGFWKKGAFFVVS-TSGHLLLYDPNTQEMRDLGVT 339 (379)
Q Consensus 277 ~~~i~iW~l~~-~~W~~~~~i~~~~~~~~~---~~~~~~~~il~~~-~~~~l~~yd~~t~~~~~v~~~ 339 (379)
+..+.||.++. +.=+-+... ....| ++..++|.-++.. -++.+-.||+.+++...|..+
T Consensus 49 D~tVR~wevq~~g~~~~ka~~----~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~H 112 (347)
T KOG0647|consen 49 DGTVRIWEVQNSGQLVPKAQQ----SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAH 112 (347)
T ss_pred CCceEEEEEecCCcccchhhh----ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeec
Confidence 67899999987 221111111 11222 2333455555544 488999999999999998864
No 107
>PF10902 DUF2693: Protein of unknown function (DUF2693); InterPro: IPR024401 This family of proteins is found in bacteria and bacteriophages. Its function is unknown.
Probab=34.65 E-value=61 Score=23.16 Aligned_cols=18 Identities=11% Similarity=0.302 Sum_probs=15.7
Q ss_pred CEEEEEeCCCCcEEEeEE
Q 039590 321 GHLLLYDPNTQEMRDLGV 338 (379)
Q Consensus 321 ~~l~~yd~~t~~~~~v~~ 338 (379)
..+.+||.+.+.|+-+.+
T Consensus 49 ~s~~yfDve~~~WRSFk~ 66 (83)
T PF10902_consen 49 TSVRYFDVEKKGWRSFKI 66 (83)
T ss_pred ceEEEEEeccCceeeeeh
Confidence 468899999999998886
No 108
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=34.59 E-value=4.3e+02 Score=25.44 Aligned_cols=115 Identities=10% Similarity=0.168 Sum_probs=66.5
Q ss_pred EEECceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEEEECCeEEEEEEcCCCCEEEEEEEcCCeEEEEE
Q 039590 215 LYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQL 294 (379)
Q Consensus 215 v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~ 294 (379)
++=||-++-..... ..+-.||+.+.. ..-.+|.+.. --..+...+..-+++... ++..+.+|-|.+..=.+.+
T Consensus 355 fHpDgLifgtgt~d----~~vkiwdlks~~-~~a~Fpght~-~vk~i~FsENGY~Lat~a-dd~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 355 FHPDGLIFGTGTPD----GVVKIWDLKSQT-NVAKFPGHTG-PVKAISFSENGYWLATAA-DDGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred EcCCceEEeccCCC----ceEEEEEcCCcc-ccccCCCCCC-ceeEEEeccCceEEEEEe-cCCeEEEEEehhhccccee
Confidence 34467766655443 467778998877 5556666431 111455444444555544 2556999998862211222
Q ss_pred EECCCCCcccceEEeeCCeEEEEEe-CCEEEEEeCCCCcEEEeE
Q 039590 295 SVGPFVGVQRPLGFWKKGAFFVVST-SGHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 295 ~i~~~~~~~~~~~~~~~~~il~~~~-~~~l~~yd~~t~~~~~v~ 337 (379)
.++-... ..-+.+...|..+...+ +-+++.|+-+++.|+++.
T Consensus 428 ~l~~~~~-v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 428 QLDEKKE-VNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIK 470 (506)
T ss_pred ecccccc-ceeEEEcCCCCeEEeecceeEEEEEecccccceeee
Confidence 2221111 23355666676655554 447888888999999987
No 109
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=33.00 E-value=2.8e+02 Score=27.58 Aligned_cols=112 Identities=10% Similarity=0.142 Sum_probs=58.4
Q ss_pred eecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEE
Q 039590 106 PFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHV 185 (379)
Q Consensus 106 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~ 185 (379)
..+|-+++++.+..++.||||..++.+. .....+. ...+..-|.|.+++=.|+... ...++
T Consensus 59 n~dG~lL~SGSDD~r~ivWd~~~~Kllh--sI~TgHt------aNIFsvKFvP~tnnriv~sgA-----------gDk~i 119 (758)
T KOG1310|consen 59 NADGELLASGSDDTRLIVWDPFEYKLLH--SISTGHT------ANIFSVKFVPYTNNRIVLSGA-----------GDKLI 119 (758)
T ss_pred cCCCCEEeecCCcceEEeecchhcceee--eeecccc------cceeEEeeeccCCCeEEEecc-----------CcceE
Confidence 5788899998777789999999544332 2222211 123444556766655544431 12345
Q ss_pred EEEEcCCCcccccc-cccCCcceeee------ccc-cEEECc-eEeeEeecCCCCccEEEEEECCC
Q 039590 186 AMYNLRTNSWRDLK-SFKSDHYVMSF------WSG-SLYVDG-VCYWLSRFRNNDHAVILSFHLGN 242 (379)
Q Consensus 186 ~vyss~~~~W~~~~-~~~~~~~~~~~------~~~-~v~~~G-~lywl~~~~~~~~~~i~~fD~~~ 242 (379)
++|+...-+=+..+ ++ ..+...+ ..+ ++.=+| -.+|.+... ..|.-+|+..
T Consensus 120 ~lfdl~~~~~~~~d~~~--~~~~~~~~cht~rVKria~~p~~PhtfwsasED----GtirQyDiRE 179 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGM--EETTRCWSCHTDRVKRIATAPNGPHTFWSASED----GTIRQYDIRE 179 (758)
T ss_pred EEEecccccccccccCc--cchhhhhhhhhhhhhheecCCCCCceEEEecCC----cceeeecccC
Confidence 58877642222221 00 0011111 111 122244 578877665 5788888765
No 110
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=32.88 E-value=1.1e+02 Score=29.05 Aligned_cols=70 Identities=9% Similarity=0.118 Sum_probs=42.2
Q ss_pred EECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEE-ECCCCCcccc-eEEeeCC-eEEEEE-eCCEEEEEeCCCCcEEEe
Q 039590 263 VYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLS-VGPFVGVQRP-LGFWKKG-AFFVVS-TSGHLLLYDPNTQEMRDL 336 (379)
Q Consensus 263 ~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~-i~~~~~~~~~-~~~~~~~-~il~~~-~~~~l~~yd~~t~~~~~v 336 (379)
..+|++.++... ..++.+|-+++ |..+-+ .+.....+.+ -|+++.+ ++++.. .+.+++.|+.++++.-.+
T Consensus 404 S~d~k~~LvnL~--~qei~LWDl~e--~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~ 477 (519)
T KOG0293|consen 404 SKDGKLALVNLQ--DQEIHLWDLEE--NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAV 477 (519)
T ss_pred cCCCcEEEEEcc--cCeeEEeecch--hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEe
Confidence 567899999887 78999999986 222211 1222221222 2333333 344443 377999999999886544
No 111
>PF07370 DUF1489: Protein of unknown function (DUF1489); InterPro: IPR008320 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.98 E-value=26 Score=27.52 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=19.6
Q ss_pred cEEECceEeeEeecCCCCccEEEEEECCC
Q 039590 214 SLYVDGVCYWLSRFRNNDHAVILSFHLGN 242 (379)
Q Consensus 214 ~v~~~G~lywl~~~~~~~~~~i~~fD~~~ 242 (379)
-+.-+|+|||+........-.|+.|+..+
T Consensus 43 Ell~GGSlYWVikg~i~~RQ~Il~i~~~~ 71 (137)
T PF07370_consen 43 ELLDGGSLYWVIKGQIQCRQRILDIEEVT 71 (137)
T ss_pred HhccCCcEEEEECCEEEEeeeeeeeeEec
Confidence 35568999999876533344677777554
No 112
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=31.89 E-value=2.4e+02 Score=25.64 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=41.1
Q ss_pred CCeEEEEEEcCCCCEEEEEEEcC---CeEEEEEEECCCCCcccceEEeeCCeEEEEE-eCCEEEEEeCCCCcEE-EeE
Q 039590 265 NHSLCVLLSHNIENYYDIWVMKD---KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVS-TSGHLLLYDPNTQEMR-DLG 337 (379)
Q Consensus 265 ~G~L~l~~~~~~~~~i~iW~l~~---~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~-~~~~l~~yd~~t~~~~-~v~ 337 (379)
+|.+.+.+.. +..|-+|-..+ +-|+... ...-..-+.+..++..++.. .+..+..||.+|++-. +..
T Consensus 58 ~gs~~aSgG~--Dr~I~LWnv~gdceN~~~lkg----HsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k 129 (338)
T KOG0265|consen 58 DGSCFASGGS--DRAIVLWNVYGDCENFWVLKG----HSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK 129 (338)
T ss_pred CCCeEeecCC--cceEEEEeccccccceeeecc----ccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc
Confidence 5666655555 78899997544 6777651 11111122334466666655 4789999999998743 444
No 113
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=31.46 E-value=28 Score=32.02 Aligned_cols=35 Identities=20% Similarity=0.547 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHhcCCc--------chhhhheeccccccccccC
Q 039590 7 NFPEDVMIEVLSRLSV--------KSLLRFKCVCREWCSLFEN 41 (379)
Q Consensus 7 ~LP~Dll~~IL~rLP~--------~sl~r~r~VcK~W~~li~s 41 (379)
.||.++|.+|+.|..- ++...+..|||.|+....+
T Consensus 47 ~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 47 ALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred cCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 6999999999999872 4688899999999997654
No 114
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=31.39 E-value=3.8e+02 Score=23.94 Aligned_cols=111 Identities=18% Similarity=0.125 Sum_probs=65.2
Q ss_pred ECceEeeEeecCCCCccEEEEEECCCceE-EEecCCCCCCCCCcEEEEECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEE
Q 039590 217 VDGVCYWLSRFRNNDHAVILSFHLGNDVF-EEVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLS 295 (379)
Q Consensus 217 ~~G~lywl~~~~~~~~~~i~~fD~~~e~~-~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~ 295 (379)
.+|.+|=-++.. ....|..+|+.+++. ...++|... +.--++..+++|+.+.-. ....=++-.+ ...++.+
T Consensus 54 ~~g~LyESTG~y--G~S~l~~~d~~tg~~~~~~~l~~~~--FgEGit~~~d~l~qLTWk--~~~~f~yd~~--tl~~~~~ 125 (264)
T PF05096_consen 54 DDGTLYESTGLY--GQSSLRKVDLETGKVLQSVPLPPRY--FGEGITILGDKLYQLTWK--EGTGFVYDPN--TLKKIGT 125 (264)
T ss_dssp ETTEEEEEECST--TEEEEEEEETTTSSEEEEEE-TTT----EEEEEEETTEEEEEESS--SSEEEEEETT--TTEEEEE
T ss_pred CCCEEEEeCCCC--CcEEEEEEECCCCcEEEEEECCccc--cceeEEEECCEEEEEEec--CCeEEEEccc--cceEEEE
Confidence 467777665543 466899999999876 467888764 333688889999998876 4444444333 3344444
Q ss_pred ECCCCCcccceEEeeCC-eEEEEEeCCEEEEEeCCCCcEE-EeEE
Q 039590 296 VGPFVGVQRPLGFWKKG-AFFVVSTSGHLLLYDPNTQEMR-DLGV 338 (379)
Q Consensus 296 i~~~~~~~~~~~~~~~~-~il~~~~~~~l~~yd~~t~~~~-~v~~ 338 (379)
+... . ..-+...+| .+++..++.++...|+++-+.. .+.+
T Consensus 126 ~~y~-~--EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 126 FPYP-G--EGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp EE-S-S--S--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred EecC-C--cceEEEcCCCEEEEECCccceEEECCcccceEEEEEE
Confidence 4422 1 223333444 5666666889999999886543 4553
No 115
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=31.06 E-value=3.8e+02 Score=23.81 Aligned_cols=144 Identities=15% Similarity=0.121 Sum_probs=71.6
Q ss_pred EEEEEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecCCCCccEEEEEECCCceEEEecCCCCC----CCCCc
Q 039590 184 HVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIP----QSEPT 259 (379)
Q Consensus 184 ~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~----~~~~~ 259 (379)
.++|.+++++.-.... +|.+. ....+-.|.-+|++--..... ...++.++-+.+...--.|... ..+..
T Consensus 147 ~irvWDl~~~~c~~~l-iPe~~--~~i~sl~v~~dgsml~a~nnk----G~cyvW~l~~~~~~s~l~P~~k~~ah~~~il 219 (311)
T KOG0315|consen 147 NIRVWDLGENSCTHEL-IPEDD--TSIQSLTVMPDGSMLAAANNK----GNCYVWRLLNHQTASELEPVHKFQAHNGHIL 219 (311)
T ss_pred cEEEEEccCCcccccc-CCCCC--cceeeEEEcCCCcEEEEecCC----ccEEEEEccCCCccccceEhhheecccceEE
Confidence 4558888887654433 11211 112333445555544333222 3455555555443221112111 22222
Q ss_pred -EEEEECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEEEEe-CCEEEEEeCCCCcEEEeE
Q 039590 260 -IIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST-SGHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 260 -~l~~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~-~~~l~~yd~~t~~~~~v~ 337 (379)
.+..-+++....+.. +....||-.++. -.....+....+...-..|..+|+.++... +...-.||+++++-.+..
T Consensus 220 ~C~lSPd~k~lat~ss--dktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 220 RCLLSPDVKYLATCSS--DKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY 296 (311)
T ss_pred EEEECCCCcEEEeecC--CceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec
Confidence 344556676655555 789999999863 111223333222222233444566555543 667888999988755543
No 116
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=30.59 E-value=4.2e+02 Score=24.20 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=43.4
Q ss_pred EEEcC--CCcccccccccCCcc-eeeeccccEEECceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEEE
Q 039590 187 MYNLR--TNSWRDLKSFKSDHY-VMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGV 263 (379)
Q Consensus 187 vyss~--~~~W~~~~~~~~~~~-~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~ 263 (379)
+|... ..+|.... .... +..+...+|.+++.--|+.+.. ..|+.-.-..++|+.++++.......+.+..
T Consensus 39 il~T~DGG~tW~~~~---~~~~~~~~~~l~~I~f~~~~g~ivG~~----g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~ 111 (302)
T PF14870_consen 39 ILKTTDGGKTWQPVS---LDLDNPFDYHLNSISFDGNEGWIVGEP----GLLLHTTDGGKTWERVPLSSKLPGSPFGITA 111 (302)
T ss_dssp EEEESSTTSS-EE--------S-----EEEEEEEETTEEEEEEET----TEEEEESSTTSS-EE----TT-SS-EEEEEE
T ss_pred EEEECCCCccccccc---cCCCccceeeEEEEEecCCceEEEcCC----ceEEEecCCCCCcEEeecCCCCCCCeeEEEE
Confidence 44443 35898776 1111 1122233444444444565543 3566666678999999877544323334554
Q ss_pred E-CCeEEEEEEcCCCCEEEEEEEcC--CeEEEEE
Q 039590 264 Y-NHSLCVLLSHNIENYYDIWVMKD--KCWIKQL 294 (379)
Q Consensus 264 ~-~G~L~l~~~~~~~~~i~iW~l~~--~~W~~~~ 294 (379)
. ++...++... =.|+.-.+ .+|+.+.
T Consensus 112 l~~~~~~l~~~~-----G~iy~T~DgG~tW~~~~ 140 (302)
T PF14870_consen 112 LGDGSAELAGDR-----GAIYRTTDGGKTWQAVV 140 (302)
T ss_dssp EETTEEEEEETT-------EEEESSTTSSEEEEE
T ss_pred cCCCcEEEEcCC-----CcEEEeCCCCCCeeEcc
Confidence 4 4444444322 35788887 8998765
No 117
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=29.38 E-value=4.8e+02 Score=24.46 Aligned_cols=115 Identities=10% Similarity=0.089 Sum_probs=68.5
Q ss_pred EECceEeeEeecCCCCccEEEEEECCCc------eEEEecCCCCCCCC---CcEEEE---ECCeEEEEEEcC-----CCC
Q 039590 216 YVDGVCYWLSRFRNNDHAVILSFHLGND------VFEEVQEPYIPQSE---PTIIGV---YNHSLCVLLSHN-----IEN 278 (379)
Q Consensus 216 ~~~G~lywl~~~~~~~~~~i~~fD~~~e------~~~~i~~P~~~~~~---~~~l~~---~~G~L~l~~~~~-----~~~ 278 (379)
-.+|..+|.+..+ .|...|+.+. .|..+..-.....+ ....+. -+++|+++.... ...
T Consensus 203 ~~dg~~~~vs~eG-----~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 203 NKSGRLVWPTYTG-----KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred cCCCcEEEEecCC-----eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCC
Confidence 3479999998776 8889986543 24433221111111 112232 345666643211 123
Q ss_pred EEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCe-EEEEEe--CCEEEEEeCCCCc-EEEe
Q 039590 279 YYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGA-FFVVST--SGHLLLYDPNTQE-MRDL 336 (379)
Q Consensus 279 ~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~--~~~l~~yd~~t~~-~~~v 336 (379)
.=.||+++-.++..+.+|.... -...+.+..+++ .++... ++.+.++|..+++ ++.+
T Consensus 278 ~~~V~ViD~~t~kvi~~i~vG~-~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 278 SRFLFVVDAKTGKRLRKIELGH-EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCEEEEEECCCCeEEEEEeCCC-ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 3478988877888888887432 234566777888 666543 5679999998876 4455
No 118
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=28.61 E-value=4.8e+02 Score=24.24 Aligned_cols=115 Identities=13% Similarity=0.230 Sum_probs=69.2
Q ss_pred CceEeeEeecCCCCccEEEEEECCCceEEE---ecCCCCCCCCCcEEE-EECCeEEEEEEcCCCCEEEEEEEcC--CeEE
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDVFEE---VQEPYIPQSEPTIIG-VYNHSLCVLLSHNIENYYDIWVMKD--KCWI 291 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~~~~---i~~P~~~~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~--~~W~ 291 (379)
+|.+-|...-+ .+.|..||+....... ..+++.. + +..|+ --+|+++++... -..++.+|..+. .+-+
T Consensus 155 ~~~~l~v~DLG---~Dri~~y~~~dg~L~~~~~~~v~~G~-G-PRHi~FHpn~k~aY~v~E-L~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 155 DGRYLVVPDLG---TDRIFLYDLDDGKLTPADPAEVKPGA-G-PRHIVFHPNGKYAYLVNE-LNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred CCCEEEEeecC---CceEEEEEcccCccccccccccCCCC-C-cceEEEcCCCcEEEEEec-cCCEEEEEEEcCCCceEE
Confidence 44444444433 4567777776554432 2233332 1 11444 567888776655 478999999998 6777
Q ss_pred EEEEECCCC-Cc-----ccceEEeeCCeEEEEEe--CCEEEEE--eCCCCcEEEeEE
Q 039590 292 KQLSVGPFV-GV-----QRPLGFWKKGAFFVVST--SGHLLLY--DPNTQEMRDLGV 338 (379)
Q Consensus 292 ~~~~i~~~~-~~-----~~~~~~~~~~~il~~~~--~~~l~~y--d~~t~~~~~v~~ 338 (379)
.+-+++.++ ++ ..-+.+..+|+.+..+. .+.+.+| |..+++++-+..
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~ 285 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGI 285 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEE
Confidence 777777554 22 23355667888777654 3444444 778888887775
No 119
>PF15408 PH_7: Pleckstrin homology domain
Probab=28.57 E-value=14 Score=26.32 Aligned_cols=24 Identities=29% Similarity=0.671 Sum_probs=19.8
Q ss_pred chhhhheeccccccccccChhhHh
Q 039590 23 KSLLRFKCVCREWCSLFENPSFIS 46 (379)
Q Consensus 23 ~sl~r~r~VcK~W~~li~s~~F~~ 46 (379)
+-++..+-|||+|-..+.+|+|.-
T Consensus 77 ~~FA~S~~~~~~Wi~~mN~~s~~~ 100 (104)
T PF15408_consen 77 QCFASSKKVCQSWIQVMNSPSFRV 100 (104)
T ss_pred hhhhhHHHHHHHHHHHhcChhhhh
Confidence 555666779999999999999964
No 120
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=27.25 E-value=5e+02 Score=23.91 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=60.1
Q ss_pred cccEEECceEeeEeecCCCCccEEEEEECCCceEEE-ecCCCCCCCCCcEEEEECCeE---EEEEEcCCCCEEEEEEEcC
Q 039590 212 SGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEE-VQEPYIPQSEPTIIGVYNHSL---CVLLSHNIENYYDIWVMKD 287 (379)
Q Consensus 212 ~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~-i~~P~~~~~~~~~l~~~~G~L---~l~~~~~~~~~i~iW~l~~ 287 (379)
-.++.++|-.---++. ...|-.||+.+..=.. +--|.+. ..-....+.+ .++... .+..|.||..+
T Consensus 46 itavAVs~~~~aSGss----DetI~IYDm~k~~qlg~ll~Hags----itaL~F~~~~S~shLlS~s-dDG~i~iw~~~- 115 (362)
T KOG0294|consen 46 ITALAVSGPYVASGSS----DETIHIYDMRKRKQLGILLSHAGS----ITALKFYPPLSKSHLLSGS-DDGHIIIWRVG- 115 (362)
T ss_pred eeEEEecceeEeccCC----CCcEEEEeccchhhhcceeccccc----eEEEEecCCcchhheeeec-CCCcEEEEEcC-
Confidence 3456667753322222 3689999998754322 2222111 1111112222 445544 47789999765
Q ss_pred CeEEEEEEECCCCCcccceEEeeCCeEEEE-EeCCEEEEEeCCCCcEE
Q 039590 288 KCWIKQLSVGPFVGVQRPLGFWKKGAFFVV-STSGHLLLYDPNTQEMR 334 (379)
Q Consensus 288 ~~W~~~~~i~~~~~~~~~~~~~~~~~il~~-~~~~~l~~yd~~t~~~~ 334 (379)
+|+.+..+.+...-..-+.+...|++-+. .++..+-.||+-+++.-
T Consensus 116 -~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a 162 (362)
T KOG0294|consen 116 -SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVA 162 (362)
T ss_pred -CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccc
Confidence 68777777655433444556666666444 33556666666655544
No 121
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.69 E-value=3.6e+02 Score=28.64 Aligned_cols=70 Identities=14% Similarity=0.367 Sum_probs=41.2
Q ss_pred EEECCeEEEEEEcCCCCEEEEEEEcC-CeEEEEEEECCCCCcccceEEeeCCeEEEEEe-CCEEEEEeCCCCc
Q 039590 262 GVYNHSLCVLLSHNIENYYDIWVMKD-KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST-SGHLLLYDPNTQE 332 (379)
Q Consensus 262 ~~~~G~L~l~~~~~~~~~i~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~-~~~l~~yd~~t~~ 332 (379)
+..++.|=++..-.++..+.+|.|.+ ..|+.--.-++...+.. +-+...-++++... ++.+-+||++.++
T Consensus 212 aAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVss-vlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 212 AAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSS-VLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred EEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcce-EEecCccceeEecCCCccEEEEeccccc
Confidence 34455443333333588999999999 88986433333322222 22333446666554 5678889987655
No 122
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=26.54 E-value=5.7e+02 Score=24.35 Aligned_cols=121 Identities=11% Similarity=0.042 Sum_probs=69.0
Q ss_pred cccEEECceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCc-EEEEECCeEEEEEEcC-CCCEEEEEEEcC-C
Q 039590 212 SGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPT-IIGVYNHSLCVLLSHN-IENYYDIWVMKD-K 288 (379)
Q Consensus 212 ~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~-~l~~~~G~L~l~~~~~-~~~~i~iW~l~~-~ 288 (379)
+-+...||.+...+... ..|-..|+.+++-..-. +........ .+...+|.+.--+... ...++.+|--+. +
T Consensus 178 S~sfn~dGs~l~TtckD----KkvRv~dpr~~~~v~e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~ 252 (472)
T KOG0303|consen 178 SMSFNRDGSLLCTTCKD----KKVRVIDPRRGTVVSEG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLE 252 (472)
T ss_pred EEEeccCCceeeeeccc----ceeEEEcCCCCcEeeec-ccccCCCcceeEEeccCceeeeccccccccceeccCccccc
Confidence 34455678888777665 58999999988764433 212111112 3445567754444432 577889998776 2
Q ss_pred eEEEEEEECCCCCcccceEEeeCCeEEEEEe-CCEEEEEeCCCCc--EEEeE
Q 039590 289 CWIKQLSVGPFVGVQRPLGFWKKGAFFVVST-SGHLLLYDPNTQE--MRDLG 337 (379)
Q Consensus 289 ~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~-~~~l~~yd~~t~~--~~~v~ 337 (379)
.=.....++...++..|+.=.+++-||++.. +..+-+|...... +..+.
T Consensus 253 eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln 304 (472)
T KOG0303|consen 253 EPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLN 304 (472)
T ss_pred CcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEec
Confidence 2133455665555544543333334555544 5678888877666 44443
No 123
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=26.04 E-value=1.3e+02 Score=23.22 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=21.4
Q ss_pred eEEEEEeCCEEEEEeCCCCcEEEeEEeec
Q 039590 313 AFFVVSTSGHLLLYDPNTQEMRDLGVTCF 341 (379)
Q Consensus 313 ~il~~~~~~~l~~yd~~t~~~~~v~~~~~ 341 (379)
+|+.....-.++.||.++++|++..++|.
T Consensus 21 ~Il~~a~~v~vY~f~~~~~~W~K~~iEG~ 49 (122)
T PF06058_consen 21 SILDTASHVVVYKFDHETNEWEKTDIEGT 49 (122)
T ss_dssp EEEEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred HHHhhCCeEEEEeecCCCCcEeecCcEee
Confidence 44555445567778899999999998774
No 124
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=25.23 E-value=7.6e+02 Score=25.36 Aligned_cols=87 Identities=14% Similarity=0.152 Sum_probs=49.1
Q ss_pred EEEEEECCCceEEEecCCCCCCCCCcEEE-EECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCC
Q 039590 234 VILSFHLGNDVFEEVQEPYIPQSEPTIIG-VYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKG 312 (379)
Q Consensus 234 ~i~~fD~~~e~~~~i~~P~~~~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~ 312 (379)
.|.--|+..|......... .+-..+. ..++.+.+.+.. +..+.||.-++ ....|..+.--.+-..++.+|
T Consensus 201 ~Ir~w~~~ge~l~~~~ght---n~vYsis~~~~~~~Ivs~gE--DrtlriW~~~e----~~q~I~lPttsiWsa~~L~Ng 271 (745)
T KOG0301|consen 201 SIRLWDLDGEVLLEMHGHT---NFVYSISMALSDGLIVSTGE--DRTLRIWKKDE----CVQVITLPTTSIWSAKVLLNG 271 (745)
T ss_pred eEEEEeccCceeeeeeccc---eEEEEEEecCCCCeEEEecC--CceEEEeecCc----eEEEEecCccceEEEEEeeCC
Confidence 4555566555444333221 1222344 456677777776 78999998873 333444222113344556677
Q ss_pred eEEEEEeCCEEEEEeCC
Q 039590 313 AFFVVSTSGHLLLYDPN 329 (379)
Q Consensus 313 ~il~~~~~~~l~~yd~~ 329 (379)
+|+.-..++.+.+|-.+
T Consensus 272 DIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 272 DIVVGGSDGRVRVFTVD 288 (745)
T ss_pred CEEEeccCceEEEEEec
Confidence 88777777777777544
No 125
>PF02393 US22: US22 like; InterPro: IPR003360 Herpesviruses are large and complex DNA viruses, widely found in nature. Human cytomegalovirus (HCMV), an important human pathogen, defines the betaherpesvirus family. Mouse cytomegalovirus (MCMV) and rat cytomegalovirus serve as biological model systems for HCMV. HCMV, MCMV, and rat CMV display the largest genomes among the herpesviruses and are essentially co-linear over the central 180 kb of the 230-kb genomes. Betaherpesviruses, which include the CMVs as well as human herpesviruses 6 and 7, differ from alpha- and gammaherpesviruses by the presence of additional gene families such as the US22 gene family, which are mainly clustered at the ends of the genome. The US22 family was first described in HCMV. This gene family comprises 12 members in both HCMV and MCMV and 11 in rat CMV []. Members of the US22 gene family are characterised by stretches of hydrophobic and charged residues as well as up to four conserved sequence motifs which are specific for betaherpesviruses. Motif I differs between the HCMV US and UL family members []. Motifs I and II have consensus sequences, while motifs III and IV are less well defined but have stretches of non-polar residues [, ]. Members of this gene family are widely divergent in function and their involvement in viral replication []. This entry contains US22 family members from the Cytomegalovirus, Muromegalovirus and the Roseolovirus taxonomic groups. The name sake of this family US22 is an early nuclear protein that is secreted from cells []. The US22 family may have a role in virus replication and pathogenesis [].
Probab=24.53 E-value=1.3e+02 Score=22.99 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=21.6
Q ss_pred CeEEEEEeCCEEEEEeCCCCcEEEeE
Q 039590 312 GAFFVVSTSGHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 312 ~~il~~~~~~~l~~yd~~t~~~~~v~ 337 (379)
.-++++...+.+++||++++.+-.+.
T Consensus 82 ~~vvl~~~~G~Vy~yd~~~~~l~~lA 107 (125)
T PF02393_consen 82 RLVVLVGESGRVYAYDPEDDRLYRLA 107 (125)
T ss_pred eEEEEEeCCCeEEEEEcCCCEEEEEe
Confidence 34677777899999999998888877
No 126
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=24.46 E-value=5.1e+02 Score=23.07 Aligned_cols=104 Identities=11% Similarity=0.081 Sum_probs=59.5
Q ss_pred ccEEEEEECCCceEEEecCCCCCCCCCcEEEE-ECCeEEEEEEcCCCCEEEEEEEcC----CeEEEEEEECCCCCcccce
Q 039590 232 HAVILSFHLGNDVFEEVQEPYIPQSEPTIIGV-YNHSLCVLLSHNIENYYDIWVMKD----KCWIKQLSVGPFVGVQRPL 306 (379)
Q Consensus 232 ~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~----~~W~~~~~i~~~~~~~~~~ 306 (379)
...|-+.|+.+..+.....|+..... ..|.+ .+|+....... ....-+|.|-. ..-+.+.++.... ...+
T Consensus 145 sg~irvWDl~~~~c~~~liPe~~~~i-~sl~v~~dgsml~a~nn--kG~cyvW~l~~~~~~s~l~P~~k~~ah~--~~il 219 (311)
T KOG0315|consen 145 SGNIRVWDLGENSCTHELIPEDDTSI-QSLTVMPDGSMLAAANN--KGNCYVWRLLNHQTASELEPVHKFQAHN--GHIL 219 (311)
T ss_pred CCcEEEEEccCCccccccCCCCCcce-eeEEEcCCCcEEEEecC--CccEEEEEccCCCccccceEhhheeccc--ceEE
Confidence 35899999999999988888765211 24553 46665444433 67788898875 1222222222211 1222
Q ss_pred E--EeeCCeEEEEEe-CCEEEEEeCCCCcEEEeEEee
Q 039590 307 G--FWKKGAFFVVST-SGHLLLYDPNTQEMRDLGVTC 340 (379)
Q Consensus 307 ~--~~~~~~il~~~~-~~~l~~yd~~t~~~~~v~~~~ 340 (379)
. ...+++.+.... +..+.+|+.++.-.-+..+.|
T Consensus 220 ~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~g 256 (311)
T KOG0315|consen 220 RCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG 256 (311)
T ss_pred EEEECCCCcEEEeecCCceEEEEecCCceeeEEEeec
Confidence 2 233555554443 678999999888333344443
No 127
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=24.05 E-value=7.3e+02 Score=24.74 Aligned_cols=127 Identities=16% Similarity=0.190 Sum_probs=75.1
Q ss_pred ccEEEEEECCCceEE---EecCCCCCCCCCcEEEEECCeEEEEEEcC-------CCCEEEEEEEcCCeEEEEEEECCCCC
Q 039590 232 HAVILSFHLGNDVFE---EVQEPYIPQSEPTIIGVYNHSLCVLLSHN-------IENYYDIWVMKDKCWIKQLSVGPFVG 301 (379)
Q Consensus 232 ~~~i~~fD~~~e~~~---~i~~P~~~~~~~~~l~~~~G~L~l~~~~~-------~~~~i~iW~l~~~~W~~~~~i~~~~~ 301 (379)
.-.|..|++...+.. ...+|-.. ...+.+-+.+|.|-++.... ....=.|++|++ .=..+.++..+..
T Consensus 247 ~T~I~kf~~~~~~~~y~~sg~V~G~l-lnqFsmdE~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD~-~L~~vG~l~~la~ 324 (521)
T PF09826_consen 247 STTIYKFALDGGKIEYVGSGSVPGYL-LNQFSMDEYDGYLRVATTSGNWWWDSEDTSSNNLYVLDE-DLKIVGSLEGLAP 324 (521)
T ss_pred ceEEEEEEccCCcEEEEEEEEECcEE-cccccEeccCCEEEEEEecCcccccCCCCceEEEEEECC-CCcEeEEccccCC
Confidence 458999999887776 34566554 23467889999999998662 234456666663 2223333332111
Q ss_pred cccc--eEEeeCCeEEEE--EeCCEEEEEeCCC----CcEEEeEEeeccceeEEEeeee-eecCCCCCc
Q 039590 302 VQRP--LGFWKKGAFFVV--STSGHLLLYDPNT----QEMRDLGVTCFDVSVHMYKESL-IRLKGGDNL 361 (379)
Q Consensus 302 ~~~~--~~~~~~~~il~~--~~~~~l~~yd~~t----~~~~~v~~~~~~~~~~~y~~sl-~~~~~~~~~ 361 (379)
-+++ ..+. ++..+++ ..-+=|++.|++. +.+-+++|.|...+.++|-+.+ +-++...++
T Consensus 325 gE~IysvRF~-Gd~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPGfS~YLHP~~e~~LlGiG~~~~~ 392 (521)
T PF09826_consen 325 GERIYSVRFM-GDRAYLVTFRQVDPLFVIDLSDPANPKVLGELKIPGFSDYLHPYDENHLLGIGKDTDE 392 (521)
T ss_pred CceEEEEEEe-CCeEEEEEEeecCceEEEECCCCCCCceeeEEECccchhceeECCCCeEEEEcccCcc
Confidence 0222 2222 2333444 3356799999876 4466788888877667887744 556654433
No 128
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=23.43 E-value=2.4e+02 Score=21.21 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=27.9
Q ss_pred eEEEEecCCCc-eecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEE
Q 039590 120 RLILCNLETKE-SRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIH 169 (379)
Q Consensus 120 ~~~V~NP~T~~-~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 169 (379)
.++..||.+++ |... .. ...+.+..|...+.|.|....
T Consensus 17 ~v~~~~p~~~~~W~~~------~~------~g~v~~v~d~~~~~y~I~~~~ 55 (111)
T PF00568_consen 17 QVYQADPDTKRQWSPV------KG------TGVVCFVKDNSRRSYFIRLYD 55 (111)
T ss_dssp EEEEEETTTSESEEES------SS------EEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEcCCCCcEeeC------Ce------EEEEEEEEECCCCEEEEEEEE
Confidence 48889999988 9876 11 124678888888889887763
No 129
>PLN00181 protein SPA1-RELATED; Provisional
Probab=23.12 E-value=8.9e+02 Score=25.45 Aligned_cols=95 Identities=12% Similarity=0.127 Sum_probs=51.6
Q ss_pred cEEEEEECCCce--EEEecCCCCCCCCCcEEEEECCeEEEEEEcCCCCEEEEEEEcC----CeEEEEEEECCCCCcccce
Q 039590 233 AVILSFHLGNDV--FEEVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKD----KCWIKQLSVGPFVGVQRPL 306 (379)
Q Consensus 233 ~~i~~fD~~~e~--~~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~----~~W~~~~~i~~~~~~~~~~ 306 (379)
..|..+|+.+.. ...+.. .. ..-..+...+|...+.+.. +..+.||-+.. ..|..+..+.........+
T Consensus 640 g~I~iwD~~~~~~~~~~~~~--h~-~~V~~v~f~~~~~lvs~s~--D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v 714 (793)
T PLN00181 640 HKVYYYDLRNPKLPLCTMIG--HS-KTVSYVRFVDSSTLVSSST--DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV 714 (793)
T ss_pred CeEEEEECCCCCccceEecC--CC-CCEEEEEEeCCCEEEEEEC--CCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE
Confidence 478889987643 112211 11 0111343446666555554 67899998864 2455555554322222234
Q ss_pred EEeeCCeEEEEE-eCCEEEEEeCCCCc
Q 039590 307 GFWKKGAFFVVS-TSGHLLLYDPNTQE 332 (379)
Q Consensus 307 ~~~~~~~il~~~-~~~~l~~yd~~t~~ 332 (379)
.+..++.++... .++.+.+||..+..
T Consensus 715 ~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 715 GLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred EEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 444455555443 47889999976553
No 130
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=21.98 E-value=6.5e+02 Score=23.40 Aligned_cols=71 Identities=14% Similarity=0.189 Sum_probs=40.4
Q ss_pred CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCe-EEEEEe-CCEEEEEeCCCCcEEEeE
Q 039590 265 NHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGA-FFVVST-SGHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 265 ~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~-~~~l~~yd~~t~~~~~v~ 337 (379)
.++.++++.-..+..+++|.+.+..|. ++|+..+.--.-.+...+|+ |+.... +-++-+|.+.|++...++
T Consensus 58 ads~~ilC~~yk~~~vqvwsl~Qpew~--ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~ 130 (447)
T KOG4497|consen 58 ADSCHILCVAYKDPKVQVWSLVQPEWY--CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP 130 (447)
T ss_pred ccceeeeeeeeccceEEEEEeecceeE--EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec
Confidence 455555555445778999999998886 55663321111223334553 444333 346667776666655444
No 131
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=21.78 E-value=6.2e+02 Score=26.31 Aligned_cols=92 Identities=11% Similarity=0.137 Sum_probs=47.2
Q ss_pred cEEEEEECCCceEEE-ecCCCCCCCCC-cEEEEECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEee
Q 039590 233 AVILSFHLGNDVFEE-VQEPYIPQSEP-TIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWK 310 (379)
Q Consensus 233 ~~i~~fD~~~e~~~~-i~~P~~~~~~~-~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~ 310 (379)
..+...|+++.+-.. +-.-. .... ..+...++.+.++.++ .+..++||-+..+ +...++.....-...+-+.+
T Consensus 43 E~vn~WdlRtge~~~~l~~~~--~k~evt~l~~~~d~l~lAVGY-aDGsVqif~~~s~--~~~~tfngHK~AVt~l~fd~ 117 (888)
T KOG0306|consen 43 EQVNIWDLRTGEIEKKLILLK--KKAEVTCLRSSDDILLLAVGY-ADGSVQIFSLESE--EILITFNGHKAAVTTLKFDK 117 (888)
T ss_pred ccEeEEeeecchhhhhhhhhc--ccceEEEeeccCCcceEEEEe-cCceEEeeccCCC--ceeeeecccccceEEEEEcc
Confidence 468888888764422 11100 0112 2566778887776666 4789999999852 22233322221112233334
Q ss_pred CCeEEEEEe-CCEEEEEeCC
Q 039590 311 KGAFFVVST-SGHLLLYDPN 329 (379)
Q Consensus 311 ~~~il~~~~-~~~l~~yd~~ 329 (379)
.|..+.... +..+++||+-
T Consensus 118 ~G~rlaSGskDt~IIvwDlV 137 (888)
T KOG0306|consen 118 IGTRLASGSKDTDIIVWDLV 137 (888)
T ss_pred cCceEeecCCCccEEEEEec
Confidence 444444322 4556666654
No 132
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=21.64 E-value=8.2e+02 Score=25.29 Aligned_cols=56 Identities=13% Similarity=0.281 Sum_probs=33.0
Q ss_pred EEEEEECCCceEEEecCCCCC---CCCCcEEE-EECCeEEEEEEcCCCCEEEEEEEcC----CeEEEEE
Q 039590 234 VILSFHLGNDVFEEVQEPYIP---QSEPTIIG-VYNHSLCVLLSHNIENYYDIWVMKD----KCWIKQL 294 (379)
Q Consensus 234 ~i~~fD~~~e~~~~i~~P~~~---~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~----~~W~~~~ 294 (379)
.|...|+.+.+-. +|... ......+. +.++...+...+ ...+.+|.++. .+|.-.+
T Consensus 41 ~Vi~idv~t~~~~---l~s~~~ed~d~ita~~l~~d~~~L~~a~r--s~llrv~~L~tgk~irswKa~H 104 (775)
T KOG0319|consen 41 RVIIIDVATGSIA---LPSGSNEDEDEITALALTPDEEVLVTASR--SQLLRVWSLPTGKLIRSWKAIH 104 (775)
T ss_pred eEEEEEccCCcee---cccCCccchhhhheeeecCCccEEEEeec--cceEEEEEcccchHhHhHhhcc
Confidence 6888888887765 44332 11112344 444444444444 68899999997 5676533
No 133
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=21.46 E-value=7.8e+02 Score=24.13 Aligned_cols=32 Identities=16% Similarity=0.300 Sum_probs=24.7
Q ss_pred ccccEEECceEeeEeecCCCCccEEEEEECCC--ceEEE
Q 039590 211 WSGSLYVDGVCYWLSRFRNNDHAVILSFHLGN--DVFEE 247 (379)
Q Consensus 211 ~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~--e~~~~ 247 (379)
...+++.+|.+|.....+ .+.++|..+ ..|+.
T Consensus 54 ~~sPvv~~g~vy~~~~~g-----~l~AlD~~tG~~~W~~ 87 (488)
T cd00216 54 EGTPLVVDGDMYFTTSHS-----ALFALDAATGKVLWRY 87 (488)
T ss_pred ccCCEEECCEEEEeCCCC-----cEEEEECCCChhhcee
Confidence 456789999999987655 899999875 45764
No 134
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=21.18 E-value=1.1e+03 Score=25.91 Aligned_cols=204 Identities=15% Similarity=0.089 Sum_probs=0.0
Q ss_pred cceecceEEEecCCCCeEEEEecCCCceecC--------------CCCcccCCCcccCCccEEEEeeecCCCceEEEEEE
Q 039590 104 GGPFDGIFCIHGPTNDRLILCNLETKESRTL--------------PKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIH 169 (379)
Q Consensus 104 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~L--------------P~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 169 (379)
+++.++.|.+.+...+.+.++|+.++....+ .......... .++.+|+..+...|....
T Consensus 631 vd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P-------~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 631 YNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSP-------WDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred EeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCC-------eEEEEecCCCeEEEEECC
Q ss_pred EEeecccccceeeeEEEEEEcCCCcccccccccCCc-------------ceeee-ccccEEECce-EeeEeecCCCCccE
Q 039590 170 SLWNEKRQEIYEFAHVAMYNLRTNSWRDLKSFKSDH-------------YVMSF-WSGSLYVDGV-CYWLSRFRNNDHAV 234 (379)
Q Consensus 170 ~~~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~-------------~~~~~-~~~~v~~~G~-lywl~~~~~~~~~~ 234 (379)
...+.+|+..++..+... .. ..+.. ..-++.-+|. +|...... ..
T Consensus 704 ------------~~~I~v~d~~~g~v~~~~----G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n----~~ 763 (1057)
T PLN02919 704 ------------QHQIWEYNISDGVTRVFS----GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES----SS 763 (1057)
T ss_pred ------------CCeEEEEECCCCeEEEEe----cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC----Ce
Q ss_pred EEEEECCCceEEEecC-------------------CCCCCCCCcEEE-EECCeEEEEEEcCCCCEEEEEEEcCCeEEEEE
Q 039590 235 ILSFHLGNDVFEEVQE-------------------PYIPQSEPTIIG-VYNHSLCVLLSHNIENYYDIWVMKDKCWIKQL 294 (379)
Q Consensus 235 i~~fD~~~e~~~~i~~-------------------P~~~~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~ 294 (379)
|..||+.+.....+-. .......+..++ ..+|.|++.... ...+.+|-.+......+.
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~--N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY--NHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC--CCEEEEEECCCCeEEEEe
Q ss_pred EEC---------CCCCcccc--eEEeeCCeEEEEEe-CCEEEEEeCCCCcEEEe
Q 039590 295 SVG---------PFVGVQRP--LGFWKKGAFFVVST-SGHLLLYDPNTQEMRDL 336 (379)
Q Consensus 295 ~i~---------~~~~~~~~--~~~~~~~~il~~~~-~~~l~~yd~~t~~~~~v 336 (379)
... ....+..| +.+..+|.+|+... ++.+..+|+++++..++
T Consensus 842 G~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~~~~ 895 (1057)
T PLN02919 842 GTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEAAEI 895 (1057)
T ss_pred ccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcccee
No 135
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=20.77 E-value=3.6e+02 Score=19.99 Aligned_cols=39 Identities=10% Similarity=0.061 Sum_probs=28.7
Q ss_pred eEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEE
Q 039590 120 RLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIH 169 (379)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 169 (379)
+++..+|.+++|...- .. ...+.+..|+..+.|.+....
T Consensus 10 ~v~~~~~~~~~W~~~~-----~~------~g~v~~~~d~~~~~y~i~~~~ 48 (104)
T cd00837 10 QVYTADPSTGKWVPAS-----GG------TGAVSLVKDSTRNTYRIRGVD 48 (104)
T ss_pred EEEEECCCCCceEECC-----CC------eEEEEEEEECCCCEEEEEEEe
Confidence 4888999999998632 11 125788889988889887763
No 136
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=20.72 E-value=3e+02 Score=20.03 Aligned_cols=28 Identities=14% Similarity=0.338 Sum_probs=21.3
Q ss_pred CCeEEEEEeCCEEEEEeCCCCcEE-EeEE
Q 039590 311 KGAFFVVSTSGHLLLYDPNTQEMR-DLGV 338 (379)
Q Consensus 311 ~~~il~~~~~~~l~~yd~~t~~~~-~v~~ 338 (379)
....+++.+..+++++|++++..+ +|.+
T Consensus 16 kkR~LiLTd~PrL~yvdp~~~~~KgeIp~ 44 (89)
T cd01262 16 KKRQLILTNGPRLIYVDPVKKVVKGEIPW 44 (89)
T ss_pred ceeeEEEecCceEEEEcCCcCeEEeEecc
Confidence 345677777889999999998887 3443
Done!