Query 039590
Match_columns 379
No_of_seqs 152 out of 1577
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 19:12:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039590.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039590hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ii7_A Kelch-like protein 7; p 99.3 3.1E-10 1.1E-14 102.7 24.0 212 103-338 50-280 (306)
2 4asc_A Kelch repeat and BTB do 99.3 3.1E-10 1.1E-14 103.2 23.1 196 120-337 68-284 (315)
3 2woz_A Kelch repeat and BTB do 99.3 4.6E-10 1.6E-14 102.2 23.3 193 121-336 80-293 (318)
4 2xn4_A Kelch-like protein 2; s 99.3 5.3E-10 1.8E-14 101.0 23.4 209 104-337 57-283 (302)
5 1zgk_A Kelch-like ECH-associat 99.3 5.8E-10 2E-14 101.1 23.5 209 104-337 66-294 (308)
6 2vpj_A Kelch-like protein 12; 99.3 8E-10 2.7E-14 99.7 21.9 209 104-337 58-285 (301)
7 2uvk_A YJHT; unknown function, 99.3 5.1E-10 1.8E-14 103.5 20.4 241 104-360 15-327 (357)
8 3ii7_A Kelch-like protein 7; p 99.2 3.1E-09 1.1E-13 96.1 22.8 216 118-359 23-257 (306)
9 2xn4_A Kelch-like protein 2; s 99.2 5.3E-09 1.8E-13 94.3 22.8 216 119-359 30-261 (302)
10 2vpj_A Kelch-like protein 12; 99.2 6.3E-09 2.2E-13 93.7 22.5 216 119-359 31-263 (301)
11 4asc_A Kelch repeat and BTB do 99.2 8.3E-09 2.8E-13 93.7 23.2 199 120-337 14-228 (315)
12 1zgk_A Kelch-like ECH-associat 99.1 4.4E-09 1.5E-13 95.2 20.2 220 119-359 39-272 (308)
13 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 8.1E-11 2.8E-15 76.7 2.1 40 7-46 11-50 (53)
14 2e31_A FBS1, F-box only protei 99.0 7.9E-11 2.7E-15 104.3 2.6 46 7-52 53-99 (297)
15 2zwa_A Leucine carboxyl methyl 99.0 2.2E-08 7.4E-13 100.9 19.5 211 107-339 396-644 (695)
16 2woz_A Kelch repeat and BTB do 99.0 4.5E-08 1.5E-12 88.9 19.9 230 108-358 15-262 (318)
17 2uvk_A YJHT; unknown function, 98.9 1E-07 3.5E-12 88.0 20.1 217 103-337 60-349 (357)
18 3v7d_B Cell division control p 98.6 9.1E-05 3.1E-09 70.2 28.5 42 7-48 17-59 (464)
19 2ovr_B FBW7, F-BOX/WD repeat p 98.5 9.6E-05 3.3E-09 69.8 28.1 44 7-50 21-64 (445)
20 1p22_A F-BOX/WD-repeat protein 98.5 2.3E-05 8E-10 73.9 22.8 42 7-48 13-58 (435)
21 1k3i_A Galactose oxidase precu 98.3 4.5E-06 1.5E-10 83.6 11.6 214 107-337 252-504 (656)
22 1k3i_A Galactose oxidase precu 98.3 9.1E-06 3.1E-10 81.3 13.7 195 120-337 220-448 (656)
23 2zwa_A Leucine carboxyl methyl 98.2 1.9E-05 6.4E-10 79.5 13.5 173 183-359 412-617 (695)
24 3l2o_B F-box only protein 4; s 97.9 3E-06 1E-10 74.1 1.9 47 7-53 7-53 (312)
25 2ast_B S-phase kinase-associat 97.4 4.6E-05 1.6E-09 69.3 1.6 40 7-46 11-50 (336)
26 2p1m_B Transport inhibitor res 96.6 0.00048 1.7E-08 67.6 1.1 32 7-38 8-40 (594)
27 3ogk_B Coronatine-insensitive 96.1 0.0011 3.8E-08 65.1 0.6 32 7-38 15-47 (592)
28 2z2n_A Virginiamycin B lyase; 95.5 0.69 2.4E-05 39.8 16.4 190 106-334 107-299 (299)
29 3jrp_A Fusion protein of prote 94.6 2.3 7.8E-05 37.8 17.5 66 265-332 171-242 (379)
30 3g4e_A Regucalcin; six bladed 93.5 3.5 0.00012 35.8 18.7 195 107-338 23-238 (297)
31 1q7f_A NHL, brain tumor CG1071 92.5 4.5 0.00015 34.5 18.9 202 106-338 38-246 (286)
32 3jro_A Fusion protein of prote 92.5 4.5 0.00015 40.6 16.9 66 265-332 169-240 (753)
33 1q7f_A NHL, brain tumor CG1071 92.3 4.9 0.00017 34.3 17.6 189 107-330 87-280 (286)
34 4gga_A P55CDC, cell division c 91.7 7.7 0.00026 35.4 17.1 195 106-335 114-315 (420)
35 3dsm_A Uncharacterized protein 91.3 7.3 0.00025 34.3 23.1 140 185-338 66-221 (328)
36 3mbr_X Glutamine cyclotransfer 91.3 6.2 0.00021 33.5 15.4 113 215-338 27-142 (243)
37 1l0q_A Surface layer protein; 89.9 10 0.00035 33.8 16.6 187 110-335 3-194 (391)
38 1npe_A Nidogen, entactin; glyc 89.2 9.3 0.00032 32.3 19.3 195 105-337 44-246 (267)
39 3ei3_B DNA damage-binding prot 89.2 12 0.0004 33.4 17.5 184 119-333 96-285 (383)
40 1gxr_A ESG1, transducin-like e 88.7 11 0.00037 32.5 16.6 93 233-334 205-300 (337)
41 3nol_A Glutamine cyclotransfer 88.5 11 0.00038 32.3 14.1 113 215-338 49-164 (262)
42 4gqb_B Methylosome protein 50; 88.2 14 0.00046 32.9 15.3 98 233-335 192-294 (344)
43 2qc5_A Streptogramin B lactona 87.5 12 0.00042 31.6 16.5 194 103-337 25-224 (300)
44 3fm0_A Protein CIAO1; WDR39,SG 87.4 15 0.0005 32.5 16.2 94 233-328 127-223 (345)
45 2z2n_A Virginiamycin B lyase; 87.2 13 0.00043 31.5 16.9 108 218-338 151-262 (299)
46 1rwi_B Serine/threonine-protei 87.2 12 0.00041 31.3 14.4 193 103-336 29-228 (270)
47 3u4y_A Uncharacterized protein 86.2 16 0.00054 31.6 15.9 190 107-333 8-210 (331)
48 3q7m_A Lipoprotein YFGL, BAMB; 86.0 11 0.00039 33.6 12.9 110 212-335 47-167 (376)
49 3e5z_A Putative gluconolactona 85.7 16 0.00055 31.2 18.3 195 111-338 42-254 (296)
50 3m0c_C LDL receptor, low-densi 85.5 33 0.0011 34.6 19.4 132 186-333 496-635 (791)
51 2iwa_A Glutamine cyclotransfer 85.4 17 0.00058 31.2 14.1 110 219-338 32-144 (266)
52 3k26_A Polycomb protein EED; W 85.2 18 0.00062 31.5 15.2 63 266-330 299-366 (366)
53 3dwl_C Actin-related protein 2 85.2 7 0.00024 34.7 11.0 193 108-333 22-239 (377)
54 3nok_A Glutaminyl cyclase; bet 85.0 17 0.00059 31.2 12.6 110 215-338 61-173 (268)
55 3hfq_A Uncharacterized protein 84.3 12 0.00042 32.7 12.2 105 232-337 17-125 (347)
56 3dsm_A Uncharacterized protein 84.3 21 0.00071 31.3 21.1 192 107-334 52-257 (328)
57 3q7m_A Lipoprotein YFGL, BAMB; 83.8 21 0.00073 31.7 13.7 110 212-335 97-212 (376)
58 1pjx_A Dfpase, DIISOPROPYLFLUO 83.8 20 0.00068 30.7 15.7 192 119-337 46-264 (314)
59 3zwl_B Eukaryotic translation 83.4 22 0.00075 30.9 17.0 67 265-335 186-254 (369)
60 3v65_B Low-density lipoprotein 83.1 26 0.0009 31.7 16.4 194 106-337 125-326 (386)
61 1k8k_C P40, ARP2/3 complex 41 82.0 12 0.00042 32.8 11.2 97 233-332 30-129 (372)
62 4e54_B DNA damage-binding prot 82.0 7.3 0.00025 35.8 9.9 193 108-333 131-330 (435)
63 1l0q_A Surface layer protein; 79.9 32 0.0011 30.4 16.8 191 108-335 85-280 (391)
64 3jrp_A Fusion protein of prote 79.8 30 0.001 30.2 13.5 95 234-332 34-136 (379)
65 4e54_B DNA damage-binding prot 79.7 36 0.0012 31.0 17.7 57 277-335 377-435 (435)
66 3scy_A Hypothetical bacterial 79.7 31 0.0011 30.2 14.3 114 218-337 221-346 (361)
67 2qc5_A Streptogramin B lactona 79.7 22 0.00077 29.9 11.8 109 218-337 30-140 (300)
68 2pm9_A Protein WEB1, protein t 79.6 33 0.0011 30.5 14.1 95 234-332 241-339 (416)
69 4g56_B MGC81050 protein; prote 79.5 33 0.0011 30.4 13.7 97 234-335 205-306 (357)
70 3fm0_A Protein CIAO1; WDR39,SG 79.4 29 0.001 30.4 12.8 98 234-334 84-185 (345)
71 3bws_A Protein LP49; two-domai 79.4 35 0.0012 30.7 16.7 194 106-335 178-395 (433)
72 3dwl_C Actin-related protein 2 79.3 21 0.00071 31.5 11.8 67 265-333 216-284 (377)
73 3bws_A Protein LP49; two-domai 79.2 33 0.0011 30.8 13.4 110 218-335 133-248 (433)
74 2aq5_A Coronin-1A; WD40 repeat 78.9 36 0.0012 30.4 18.6 113 218-337 187-308 (402)
75 3mkq_A Coatomer beta'-subunit; 78.6 55 0.0019 32.4 19.6 96 233-334 163-263 (814)
76 2dg1_A DRP35, lactonase; beta 78.6 22 0.00076 30.7 11.6 111 218-336 55-177 (333)
77 4ery_A WD repeat-containing pr 78.5 31 0.0011 29.5 17.9 96 233-334 171-272 (312)
78 3vgz_A Uncharacterized protein 78.3 33 0.0011 29.7 24.4 203 106-335 98-308 (353)
79 3hrp_A Uncharacterized protein 78.3 27 0.00094 31.8 12.4 109 217-336 140-255 (409)
80 2dg1_A DRP35, lactonase; beta 78.3 33 0.0011 29.6 15.2 205 107-338 54-271 (333)
81 1n7d_A LDL receptor, low-densi 77.7 12 0.00041 37.2 10.3 109 218-335 507-619 (699)
82 1yfq_A Cell cycle arrest prote 77.6 33 0.0011 29.5 17.4 98 233-334 170-286 (342)
83 1ri6_A Putative isomerase YBHE 76.5 36 0.0012 29.2 15.5 101 233-337 151-271 (343)
84 3m0c_C LDL receptor, low-densi 76.4 58 0.002 32.8 15.0 52 218-274 569-621 (791)
85 1rwi_B Serine/threonine-protei 76.2 28 0.00095 28.9 11.2 106 218-336 77-186 (270)
86 4aez_A CDC20, WD repeat-contai 76.1 43 0.0015 29.9 19.0 178 120-334 114-297 (401)
87 1k8k_C P40, ARP2/3 complex 41 75.8 40 0.0014 29.3 17.8 197 108-334 19-237 (372)
88 1ri6_A Putative isomerase YBHE 75.6 38 0.0013 29.0 19.0 103 233-337 200-317 (343)
89 3v64_C Agrin; beta propeller, 75.6 43 0.0015 29.7 17.7 194 106-337 82-283 (349)
90 3mkq_A Coatomer beta'-subunit; 75.3 67 0.0023 31.8 16.1 95 233-333 119-220 (814)
91 3e5z_A Putative gluconolactona 75.1 38 0.0013 28.7 16.9 106 218-335 182-291 (296)
92 4a11_B DNA excision repair pro 74.9 44 0.0015 29.4 13.5 68 265-334 256-327 (408)
93 3hfq_A Uncharacterized protein 72.1 49 0.0017 28.7 21.4 74 263-338 248-327 (347)
94 3jro_A Fusion protein of prote 71.7 63 0.0021 32.1 14.0 97 233-332 31-134 (753)
95 3bg1_A Protein SEC13 homolog; 71.6 48 0.0017 28.5 14.2 54 277-330 188-247 (316)
96 1gxr_A ESG1, transducin-like e 71.5 47 0.0016 28.3 19.3 196 106-336 60-261 (337)
97 3f3f_A Nucleoporin SEH1; struc 71.5 47 0.0016 28.2 14.2 97 233-332 33-145 (351)
98 2ghs_A AGR_C_1268P; regucalcin 71.4 51 0.0017 28.7 17.0 199 107-338 59-268 (326)
99 4ggc_A P55CDC, cell division c 71.1 47 0.0016 28.1 16.6 27 106-134 34-60 (318)
100 3ow8_A WD repeat-containing pr 69.9 54 0.0018 28.4 18.6 96 233-335 186-284 (321)
101 3p5b_L Low density lipoprotein 69.8 65 0.0022 29.2 18.9 110 218-337 213-328 (400)
102 2bkl_A Prolyl endopeptidase; m 69.6 87 0.003 30.6 19.2 189 120-337 203-404 (695)
103 3no2_A Uncharacterized protein 69.4 52 0.0018 28.0 15.7 189 107-334 3-199 (276)
104 2fp8_A Strictosidine synthase; 69.3 48 0.0016 28.7 11.3 110 218-336 29-180 (322)
105 3nol_A Glutamine cyclotransfer 68.5 55 0.0019 27.9 13.4 138 184-339 66-211 (262)
106 3dr2_A Exported gluconolactona 67.4 59 0.002 27.8 13.6 101 233-338 169-275 (305)
107 2mad_H Methylamine dehydrogena 66.7 72 0.0025 28.6 13.2 56 280-336 298-356 (373)
108 3sjl_D Methylamine dehydrogena 66.3 73 0.0025 28.9 11.9 117 217-339 236-373 (386)
109 1nir_A Nitrite reductase; hemo 65.7 93 0.0032 29.5 16.9 113 218-334 334-462 (543)
110 3s94_A LRP-6, low-density lipo 65.4 1E+02 0.0035 29.9 17.0 188 105-332 48-245 (619)
111 1kv9_A Type II quinohemoprotei 64.6 83 0.0028 30.8 12.9 114 211-335 59-192 (668)
112 3hrp_A Uncharacterized protein 64.6 83 0.0028 28.5 17.7 199 106-337 139-361 (409)
113 3p5b_L Low density lipoprotein 64.3 83 0.0029 28.5 14.7 52 218-274 257-309 (400)
114 1jmx_B Amine dehydrogenase; ox 63.4 67 0.0023 27.5 11.1 108 218-332 10-136 (349)
115 4g56_B MGC81050 protein; prote 63.3 78 0.0027 27.8 15.8 91 233-331 249-344 (357)
116 2fp8_A Strictosidine synthase; 63.2 73 0.0025 27.4 16.2 97 233-338 165-277 (322)
117 3mmy_A MRNA export factor; mRN 62.9 51 0.0018 28.4 10.3 70 266-337 54-124 (368)
118 2ad6_A Methanol dehydrogenase 62.6 84 0.0029 30.1 12.3 113 211-335 55-190 (571)
119 4ery_A WD repeat-containing pr 61.5 74 0.0025 26.9 16.9 95 233-335 129-228 (312)
120 3sov_A LRP-6, low-density lipo 61.3 83 0.0028 27.4 17.4 109 218-337 133-246 (318)
121 3s94_A LRP-6, low-density lipo 61.3 1.2E+02 0.0042 29.4 17.9 191 106-334 358-555 (619)
122 1r5m_A SIR4-interacting protei 61.0 87 0.003 27.5 18.6 96 233-335 227-324 (425)
123 3mmy_A MRNA export factor; mRN 60.3 82 0.0028 27.0 18.2 29 306-334 279-308 (368)
124 3g4e_A Regucalcin; six bladed 59.7 81 0.0028 26.8 13.2 105 218-335 24-143 (297)
125 1ijq_A LDL receptor, low-densi 59.3 88 0.003 27.1 18.9 194 106-336 39-245 (316)
126 3vl1_A 26S proteasome regulato 59.2 96 0.0033 27.5 17.0 93 233-330 313-419 (420)
127 3vl1_A 26S proteasome regulato 59.0 97 0.0033 27.4 19.8 64 265-332 258-324 (420)
128 2ojh_A Uncharacterized protein 58.8 75 0.0026 26.1 17.5 184 118-337 21-213 (297)
129 1nir_A Nitrite reductase; hemo 58.6 1.2E+02 0.0043 28.6 19.4 196 106-335 146-360 (543)
130 3v65_B Low-density lipoprotein 58.4 1E+02 0.0035 27.6 17.8 188 108-336 87-283 (386)
131 3sfz_A APAF-1, apoptotic pepti 58.2 1.8E+02 0.0063 30.4 17.5 98 233-335 723-833 (1249)
132 3vgz_A Uncharacterized protein 57.3 92 0.0031 26.7 17.8 110 218-335 151-267 (353)
133 1kb0_A Quinohemoprotein alcoho 56.6 74 0.0025 31.3 11.0 115 211-335 70-204 (677)
134 1yiq_A Quinohemoprotein alcoho 55.9 1.2E+02 0.004 29.9 12.3 114 212-335 64-197 (689)
135 3i2n_A WD repeat-containing pr 55.6 98 0.0033 26.4 17.7 95 233-332 139-245 (357)
136 2p4o_A Hypothetical protein; p 55.3 99 0.0034 26.4 12.6 104 218-332 42-149 (306)
137 2pm7_B Protein transport prote 55.2 95 0.0033 26.2 11.5 64 266-331 67-133 (297)
138 4gqb_B Methylosome protein 50; 55.2 1.1E+02 0.0037 26.8 16.1 93 233-333 237-334 (344)
139 1n7d_A LDL receptor, low-densi 55.2 97 0.0033 30.6 11.6 58 212-274 542-603 (699)
140 1got_B GT-beta; complex (GTP-b 53.4 1.1E+02 0.0038 26.4 18.1 94 233-333 164-260 (340)
141 3lrv_A PRE-mRNA-splicing facto 53.2 1.1E+02 0.0038 26.4 10.8 97 233-333 149-247 (343)
142 3mbr_X Glutamine cyclotransfer 53.1 1E+02 0.0035 25.9 15.9 137 185-339 45-189 (243)
143 2hqs_A Protein TOLB; TOLB, PAL 52.7 1.3E+02 0.0045 27.0 16.7 186 119-338 203-395 (415)
144 3dr2_A Exported gluconolactona 52.4 65 0.0022 27.5 8.9 109 218-337 55-185 (305)
145 3i2n_A WD repeat-containing pr 52.4 1.1E+02 0.0038 26.1 19.0 96 233-331 234-354 (357)
146 3odt_A Protein DOA1; ubiquitin 51.9 1E+02 0.0035 25.6 19.9 64 265-334 154-218 (313)
147 1r5m_A SIR4-interacting protei 51.6 1.2E+02 0.0043 26.5 16.7 92 233-329 310-424 (425)
148 2ojh_A Uncharacterized protein 51.2 1E+02 0.0034 25.3 16.7 98 233-337 153-265 (297)
149 2ghs_A AGR_C_1268P; regucalcin 51.0 1.2E+02 0.0041 26.2 13.3 105 218-336 60-174 (326)
150 3iz6_a 40S ribosomal protein R 50.4 1.3E+02 0.0045 26.4 14.4 203 106-336 75-286 (380)
151 4a11_B DNA excision repair pro 50.2 1.3E+02 0.0044 26.2 17.7 98 233-334 267-369 (408)
152 1erj_A Transcriptional repress 49.2 1.4E+02 0.0048 26.4 21.3 196 106-334 132-345 (393)
153 4aow_A Guanine nucleotide-bind 48.9 1.2E+02 0.0042 25.6 17.0 92 233-332 237-339 (340)
154 3v9f_A Two-component system se 48.5 2.1E+02 0.0073 28.3 14.1 111 218-337 417-531 (781)
155 2z3z_A Dipeptidyl aminopeptida 47.8 2E+02 0.0069 27.8 17.8 185 119-332 235-437 (706)
156 4gga_A P55CDC, cell division c 47.1 1.6E+02 0.0054 26.3 12.3 88 245-335 94-183 (420)
157 2oiz_A Aromatic amine dehydrog 46.6 1.5E+02 0.0052 26.0 11.7 70 266-337 266-341 (361)
158 3o4h_A Acylamino-acid-releasin 45.7 2E+02 0.0067 27.1 13.9 190 104-336 117-320 (582)
159 1ddw_A GLGF-domain protein hom 45.4 49 0.0017 24.5 5.7 39 120-169 12-51 (120)
160 1evh_A WH1 domain, protein (ME 45.3 43 0.0015 24.4 5.4 41 120-169 12-52 (112)
161 3u4y_A Uncharacterized protein 44.9 1.4E+02 0.0049 25.2 19.0 111 218-337 186-311 (331)
162 3tc9_A Hypothetical hydrolase; 44.6 1.8E+02 0.0063 26.4 12.4 109 218-335 149-262 (430)
163 1yfq_A Cell cycle arrest prote 43.2 1.2E+02 0.0041 25.7 9.2 71 265-337 22-96 (342)
164 3frx_A Guanine nucleotide-bind 43.1 1.5E+02 0.005 25.3 9.8 69 265-335 29-101 (319)
165 1ijq_A LDL receptor, low-densi 42.1 1.7E+02 0.0057 25.2 15.2 137 107-274 87-227 (316)
166 3bg1_A Protein SEC13 homolog; 41.8 1.6E+02 0.0056 25.0 10.1 96 233-331 35-137 (316)
167 3v7d_B Cell division control p 41.3 2E+02 0.0068 25.8 17.7 95 233-336 332-427 (464)
168 3iuj_A Prolyl endopeptidase; h 41.0 2.6E+02 0.009 27.2 17.6 114 217-337 290-412 (693)
169 1got_B GT-beta; complex (GTP-b 40.7 1.8E+02 0.006 25.1 12.9 97 233-334 77-177 (340)
170 1flg_A Protein (quinoprotein e 40.7 2.5E+02 0.0085 26.8 12.4 114 212-335 62-198 (582)
171 3v64_C Agrin; beta propeller, 40.6 1.9E+02 0.0064 25.4 18.5 108 218-336 127-240 (349)
172 2hqs_A Protein TOLB; TOLB, PAL 40.4 2E+02 0.007 25.7 17.3 185 119-337 159-351 (415)
173 2hes_X YDR267CP; beta-propelle 38.8 1.4E+02 0.0048 25.6 9.0 69 265-335 118-189 (330)
174 2ovr_B FBW7, F-BOX/WD repeat p 38.7 2.2E+02 0.0074 25.5 20.5 110 215-331 325-443 (445)
175 1vyh_C Platelet-activating fac 38.2 2.2E+02 0.0074 25.4 18.6 64 266-333 308-372 (410)
176 2hz6_A Endoplasmic reticulum t 37.2 9.9 0.00034 34.3 1.0 30 213-247 4-35 (369)
177 4hw6_A Hypothetical protein, I 36.9 2.4E+02 0.0084 25.6 11.3 111 212-333 141-262 (433)
178 2iwa_A Glutamine cyclotransfer 36.7 2E+02 0.0067 24.5 18.3 138 184-338 45-190 (266)
179 4a2l_A BT_4663, two-component 36.2 3.3E+02 0.011 26.9 16.3 200 102-336 92-297 (795)
180 2xbg_A YCF48-like protein; pho 35.4 2.2E+02 0.0074 24.6 13.6 137 185-337 15-158 (327)
181 1npe_A Nidogen, entactin; glyc 35.3 1.9E+02 0.0064 23.8 15.9 109 218-336 90-204 (267)
182 1i2h_A PSD-ZIP45(homer-1C/VESL 35.2 74 0.0025 25.1 5.5 39 120-169 17-56 (168)
183 2pm7_B Protein transport prote 34.9 2E+02 0.0069 24.1 19.4 64 266-331 170-239 (297)
184 3scy_A Hypothetical bacterial 34.7 2.2E+02 0.0076 24.5 13.2 96 232-331 28-130 (361)
185 1sq9_A Antiviral protein SKI8; 34.7 2.3E+02 0.0077 24.6 17.0 70 260-334 191-271 (397)
186 3ju4_A Endo-N-acetylneuraminid 34.6 1.8E+02 0.0062 26.7 8.5 62 214-275 344-407 (670)
187 3f3f_A Nucleoporin SEH1; struc 34.6 2E+02 0.0069 24.0 21.0 32 306-337 312-345 (351)
188 1pby_B Quinohemoprotein amine 34.0 2.1E+02 0.0071 24.0 19.5 58 278-338 260-319 (337)
189 2ymu_A WD-40 repeat protein; u 33.7 2.9E+02 0.0099 25.5 18.7 97 233-337 407-505 (577)
190 2hes_X YDR267CP; beta-propelle 33.6 2.2E+02 0.0077 24.2 11.5 101 234-337 176-287 (330)
191 3v9f_A Two-component system se 32.6 3.7E+02 0.013 26.4 17.7 142 185-337 471-618 (781)
192 3nok_A Glutaminyl cyclase; bet 32.0 2.4E+02 0.0081 24.0 14.1 111 215-339 102-220 (268)
193 2ynn_A Coatomer subunit beta'; 31.0 2.4E+02 0.0081 23.7 9.6 67 265-335 24-91 (304)
194 1w6s_A Methanol dehydrogenase 30.9 3.7E+02 0.013 25.8 11.1 112 212-335 56-196 (599)
195 3k26_A Polycomb protein EED; W 30.7 2.5E+02 0.0084 23.8 19.7 65 266-332 241-320 (366)
196 3sfz_A APAF-1, apoptotic pepti 30.6 4.8E+02 0.017 27.2 18.5 102 218-329 809-912 (1249)
197 1qks_A Cytochrome CD1 nitrite 30.0 3.7E+02 0.013 25.6 20.0 193 108-335 166-378 (567)
198 1p22_A F-BOX/WD-repeat protein 29.4 3E+02 0.01 24.4 18.1 107 217-334 181-289 (435)
199 2ymu_A WD-40 repeat protein; u 29.1 3.5E+02 0.012 25.0 18.5 96 233-336 448-545 (577)
200 2xzm_R RACK1; ribosome, transl 28.8 2.7E+02 0.0094 23.7 10.6 68 265-334 38-111 (343)
201 3ow8_A WD repeat-containing pr 28.4 2.8E+02 0.0094 23.6 18.6 95 233-334 144-241 (321)
202 2aq5_A Coronin-1A; WD40 repeat 27.8 3.1E+02 0.011 24.0 23.4 95 233-332 154-256 (402)
203 3gre_A Serine/threonine-protei 27.8 2.5E+02 0.0087 24.8 9.1 66 265-334 181-249 (437)
204 2qe8_A Uncharacterized protein 27.6 3E+02 0.01 23.7 10.3 74 214-287 71-154 (343)
205 2kwv_A RAD30 homolog B, DNA po 27.4 27 0.00093 20.8 1.4 15 7-21 23-37 (48)
206 1erj_A Transcriptional repress 26.9 3.2E+02 0.011 23.9 9.6 66 265-334 134-200 (393)
207 2pbi_B Guanine nucleotide-bind 26.8 3.1E+02 0.011 23.7 18.7 90 233-327 262-354 (354)
208 1pgu_A Actin interacting prote 26.3 3.9E+02 0.013 24.7 18.4 105 218-331 499-615 (615)
209 4aow_A Guanine nucleotide-bind 26.2 2.9E+02 0.0098 23.1 10.8 70 266-337 51-124 (340)
210 1yr2_A Prolyl oligopeptidase; 26.0 4.7E+02 0.016 25.5 18.9 142 182-336 293-447 (741)
211 3ei3_B DNA damage-binding prot 25.9 3.2E+02 0.011 23.6 19.4 93 233-330 141-236 (383)
212 1sq9_A Antiviral protein SKI8; 25.1 3.3E+02 0.011 23.4 18.6 98 233-334 207-326 (397)
213 2xyi_A Probable histone-bindin 25.0 3.7E+02 0.013 23.9 14.5 97 233-334 300-414 (430)
214 1jmx_B Amine dehydrogenase; ox 24.8 3.1E+02 0.011 23.0 9.9 67 265-334 10-78 (349)
215 1egx_A VAsp, vasodilator-stimu 24.7 1E+02 0.0036 22.4 4.6 42 120-169 12-53 (115)
216 3hxj_A Pyrrolo-quinoline quino 24.1 3.2E+02 0.011 22.9 10.4 30 308-337 222-251 (330)
217 3dm0_A Maltose-binding peripla 24.0 3.6E+02 0.012 26.0 9.9 69 265-335 394-466 (694)
218 2vdu_B TRNA (guanine-N(7)-)-me 23.4 4E+02 0.014 23.8 18.5 203 104-337 110-349 (450)
219 3fvz_A Peptidyl-glycine alpha- 23.3 3.5E+02 0.012 23.0 13.6 111 218-334 101-231 (329)
220 1pgu_A Actin interacting prote 22.6 4.6E+02 0.016 24.2 18.3 99 233-333 229-331 (615)
221 2xdw_A Prolyl endopeptidase; a 22.5 5.3E+02 0.018 24.9 19.8 113 218-337 297-423 (710)
222 2lyd_A Decapping protein 1; DC 22.4 1.1E+02 0.0037 23.1 4.3 29 313-341 30-58 (134)
223 2dk7_A Transcription elongatio 22.4 69 0.0024 21.3 2.8 20 315-334 24-43 (73)
224 1pby_B Quinohemoprotein amine 22.0 3.4E+02 0.012 22.5 12.2 101 233-335 11-129 (337)
225 3fvz_A Peptidyl-glycine alpha- 21.8 3.7E+02 0.013 22.8 20.1 204 107-329 100-321 (329)
226 4a0p_A LRP6, LRP-6, low-densit 21.7 5.5E+02 0.019 24.7 21.1 186 106-332 46-239 (628)
227 4ggc_A P55CDC, cell division c 21.5 3.4E+02 0.012 22.3 13.9 59 277-335 44-103 (318)
228 3c75_H MADH, methylamine dehyd 20.8 4.8E+02 0.016 23.7 12.1 70 265-335 330-407 (426)
229 4aez_A CDC20, WD repeat-contai 20.6 4.3E+02 0.015 23.1 23.7 99 233-335 284-385 (401)
230 1pjx_A Dfpase, DIISOPROPYLFLUO 20.5 3.6E+02 0.012 22.2 11.4 110 218-336 28-167 (314)
231 2p4o_A Hypothetical protein; p 20.2 3.9E+02 0.013 22.4 20.6 194 108-335 42-246 (306)
232 3zwl_B Eukaryotic translation 20.1 3.9E+02 0.013 22.4 19.6 95 233-335 197-309 (369)
No 1
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.35 E-value=3.1e-10 Score=102.70 Aligned_cols=212 Identities=12% Similarity=0.052 Sum_probs=136.4
Q ss_pred ccceecceEEEecC----CCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeeccccc
Q 039590 103 LGGPFDGIFCIHGP----TNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQE 178 (379)
Q Consensus 103 ~~~s~~GLl~~~~~----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~ 178 (379)
..+..+|.|.+.+. ..+.+.++||.|++|..+|+++..+..+ ....++ =+++.+......
T Consensus 50 ~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-------~~~~~~-----~~iyv~GG~~~~---- 113 (306)
T 3ii7_A 50 ACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSL-------AACAAE-----GKIYTSGGSEVG---- 113 (306)
T ss_dssp EEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSC-------EEEEET-----TEEEEECCBBTT----
T ss_pred EEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccce-------eEEEEC-----CEEEEECCCCCC----
Confidence 34445676666632 2347999999999999998877554432 111221 134444332111
Q ss_pred ceeeeEEEEEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecCCCC-----ccEEEEEECCCceEEEec-CCC
Q 039590 179 IYEFAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNND-----HAVILSFHLGNDVFEEVQ-EPY 252 (379)
Q Consensus 179 ~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-----~~~i~~fD~~~e~~~~i~-~P~ 252 (379)
......+++|+..+++|+.++ .++.....+.++.++|.+|.+.+..... ...+..||+.+++|+.++ +|.
T Consensus 114 ~~~~~~~~~~d~~~~~W~~~~----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~ 189 (306)
T 3ii7_A 114 NSALYLFECYDTRTESWHTKP----SMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIE 189 (306)
T ss_dssp BSCCCCEEEEETTTTEEEEEC----CCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSS
T ss_pred CcEeeeEEEEeCCCCceEeCC----CCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccc
Confidence 112234459999999999998 3433334566788999999998754211 456999999999999985 333
Q ss_pred CCCCCCcEEEEECCeEEEEEEcCCC-CEEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEEEe------CCEE
Q 039590 253 IPQSEPTIIGVYNHSLCVLLSHNIE-NYYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST------SGHL 323 (379)
Q Consensus 253 ~~~~~~~~l~~~~G~L~l~~~~~~~-~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l 323 (379)
.. .....+..+|+|++++..... ..-++|.++- ..|+.+..++. +... .-.+.-++.|+++.+ ...+
T Consensus 190 ~r--~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~-~~~~~~~~~i~v~GG~~~~~~~~~~ 265 (306)
T 3ii7_A 190 AR--KNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW-KGVT-VKCAAVGSIVYVLAGFQGVGRLGHI 265 (306)
T ss_dssp CC--BSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSC-CBSC-CEEEEETTEEEEEECBCSSSBCCEE
T ss_pred hh--hcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCC-Cccc-eeEEEECCEEEEEeCcCCCeeeeeE
Confidence 32 234677889999999865321 1234666654 89998754432 1212 222333678888764 2579
Q ss_pred EEEeCCCCcEEEeEE
Q 039590 324 LLYDPNTQEMRDLGV 338 (379)
Q Consensus 324 ~~yd~~t~~~~~v~~ 338 (379)
..||+++++|+.+.-
T Consensus 266 ~~yd~~~~~W~~~~~ 280 (306)
T 3ii7_A 266 LEYNTETDKWVANSK 280 (306)
T ss_dssp EEEETTTTEEEEEEE
T ss_pred EEEcCCCCeEEeCCC
Confidence 999999999999873
No 2
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.33 E-value=3.1e-10 Score=103.21 Aligned_cols=196 Identities=9% Similarity=-0.017 Sum_probs=128.6
Q ss_pred eEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCcccccc
Q 039590 120 RLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDLK 199 (379)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 199 (379)
.++++||.|++|..+|+++..+..+ .... ++ + +++.+........ ......+++|+..+++|+.++
T Consensus 68 ~~~~~d~~~~~W~~~~~~p~~r~~~-----~~~~--~~---~--~lyv~GG~~~~~~--~~~~~~~~~~d~~~~~W~~~~ 133 (315)
T 4asc_A 68 YFLQFDHLDSEWLGMPPLPSPRCLF-----GLGE--AL---N--SIYVVGGREIKDG--ERCLDSVMCYDRLSFKWGESD 133 (315)
T ss_dssp EEEEEETTTTEEEECCCBSSCEESC-----EEEE--ET---T--EEEEECCEESSTT--CCBCCCEEEEETTTTEEEECC
T ss_pred ceEEecCCCCeEEECCCCCcchhce-----eEEE--EC---C--EEEEEeCCcCCCC--CcccceEEEECCCCCcEeECC
Confidence 4889999999999999877544322 1111 11 1 4555533221010 122334559999999999998
Q ss_pred cccCCcceeeeccccEEECceEeeEeecCC--CCccEEEEEECCCceEEEec-CCCCCCCCCcEEEEECCeEEEEEEcCC
Q 039590 200 SFKSDHYVMSFWSGSLYVDGVCYWLSRFRN--NDHAVILSFHLGNDVFEEVQ-EPYIPQSEPTIIGVYNHSLCVLLSHNI 276 (379)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~~i~~fD~~~e~~~~i~-~P~~~~~~~~~l~~~~G~L~l~~~~~~ 276 (379)
++|.....+.++.++|.+|.+.+... .....+..||+.+++|+.++ +|... .....+..+|+|++++....
T Consensus 134 ----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~ 207 (315)
T 4asc_A 134 ----PLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTAR--SLFGATVHDGRIIVAAGVTD 207 (315)
T ss_dssp ----CCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCC--BSCEEEEETTEEEEEEEECS
T ss_pred ----CCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCch--hceEEEEECCEEEEEeccCC
Confidence 34333446677889999999987621 22357999999999999885 34332 23467788999999998743
Q ss_pred C-CEEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEEEeC---------------CEEEEEeCCCCcEEEeE
Q 039590 277 E-NYYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTS---------------GHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 277 ~-~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~---------------~~l~~yd~~t~~~~~v~ 337 (379)
. ..-++|+.+- ..|+.+..++. +...... +.-++.|+++.+. ..+..||+++++|+++.
T Consensus 208 ~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~-~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 284 (315)
T 4asc_A 208 TGLTSSAEVYSITDNKWAPFEAFPQ-ERSSLSL-VSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVL 284 (315)
T ss_dssp SSEEEEEEEEETTTTEEEEECCCSS-CCBSCEE-EEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEE
T ss_pred CCccceEEEEECCCCeEEECCCCCC-cccceeE-EEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhc
Confidence 2 2346777765 89998764332 2222222 3336677777542 35889999999999994
No 3
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.32 E-value=4.6e-10 Score=102.20 Aligned_cols=193 Identities=9% Similarity=0.098 Sum_probs=127.4
Q ss_pred EEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCccccccc
Q 039590 121 LILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDLKS 200 (379)
Q Consensus 121 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~~ 200 (379)
++++||.|++|..+|+++..+..+ ....++ + +++.+....... ......+++|+..+++|+.++
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~-------~~~~~~---~--~iyv~GG~~~~~---~~~~~~~~~yd~~~~~W~~~~- 143 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLF-------GLGEVD---D--KIYVVAGKDLQT---EASLDSVLCYDPVAAKWSEVK- 143 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSC-------EEEEET---T--EEEEEEEEBTTT---CCEEEEEEEEETTTTEEEEEC-
T ss_pred EEEEeCCCCcEEECCCCCcccccc-------ceEEEC---C--EEEEEcCccCCC---CcccceEEEEeCCCCCEeECC-
Confidence 889999999999999877655432 111111 1 455554332111 122344559999999999998
Q ss_pred ccCCcceeeeccccEEECceEeeEeecCC--CCccEEEEEECCCceEEEec-CCCCCCCCCcEEEEECCeEEEEEEcCCC
Q 039590 201 FKSDHYVMSFWSGSLYVDGVCYWLSRFRN--NDHAVILSFHLGNDVFEEVQ-EPYIPQSEPTIIGVYNHSLCVLLSHNIE 277 (379)
Q Consensus 201 ~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~~i~~fD~~~e~~~~i~-~P~~~~~~~~~l~~~~G~L~l~~~~~~~ 277 (379)
++|.....+.++.++|.+|.+.+... .....+..||+.+++|+.++ +|... .....+..+|+|++++.....
T Consensus 144 ---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~ 218 (318)
T 2woz_A 144 ---NLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPR--SMFGVAIHKGKIVIAGGVTED 218 (318)
T ss_dssp ---CCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCC--BSCEEEEETTEEEEEEEEETT
T ss_pred ---CCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCc--ccceEEEECCEEEEEcCcCCC
Confidence 34333446677889999999987532 12346999999999999985 34332 223677889999999876322
Q ss_pred -CEEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEEEe---------------CCEEEEEeCCCCcEEEe
Q 039590 278 -NYYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST---------------SGHLLLYDPNTQEMRDL 336 (379)
Q Consensus 278 -~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~---------------~~~l~~yd~~t~~~~~v 336 (379)
..-++|+++- ..|+++..++. +.....+ +..++.|+++.+ ...+..||+++++|+++
T Consensus 219 ~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~-~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 219 GLSASVEAFDLKTNKWEVMTEFPQ-ERSSISL-VSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEEEEEEEEETTTCCEEECCCCSS-CCBSCEE-EEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred CccceEEEEECCCCeEEECCCCCC-cccceEE-EEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 2346677765 89998765442 2222222 334678877743 24689999999999998
No 4
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.32 E-value=5.3e-10 Score=100.97 Aligned_cols=209 Identities=13% Similarity=0.133 Sum_probs=135.2
Q ss_pred cceecceEEEecC-----CCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeeccccc
Q 039590 104 GGPFDGIFCIHGP-----TNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQE 178 (379)
Q Consensus 104 ~~s~~GLl~~~~~-----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~ 178 (379)
+...+|.|.+.+. ..+.+.++||.|++|..+|+++..+..+ ....++ + +++.+......
T Consensus 57 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-------~~~~~~---~--~iyv~GG~~~~---- 120 (302)
T 2xn4_A 57 MVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTL-------GAAVLN---G--LLYAVGGFDGS---- 120 (302)
T ss_dssp EEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-------EEEEET---T--EEEEEEEECSS----
T ss_pred EEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccce-------EEEEEC---C--EEEEEcCCCCC----
Confidence 3445666666622 1236899999999999999877655432 111121 2 44444432211
Q ss_pred ceeeeEEEEEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecCCCC---ccEEEEEECCCceEEEec-CCCCC
Q 039590 179 IYEFAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNND---HAVILSFHLGNDVFEEVQ-EPYIP 254 (379)
Q Consensus 179 ~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~---~~~i~~fD~~~e~~~~i~-~P~~~ 254 (379)
.....+++|+..+++|+.++ .++.......++.++|.+|.+.+..... ...+..||+.+++|+.+. +|...
T Consensus 121 -~~~~~~~~~d~~~~~W~~~~----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 195 (302)
T 2xn4_A 121 -TGLSSVEAYNIKSNEWFHVA----PMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRR 195 (302)
T ss_dssp -CEEEEEEEEETTTTEEEEEC----CCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCC
T ss_pred -ccCceEEEEeCCCCeEeecC----CCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccc
Confidence 12234559999999999998 3333333566788999999998754221 346999999999999985 34332
Q ss_pred CCCCcEEEEECCeEEEEEEcCCCC-EEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEEEe------CCEEEE
Q 039590 255 QSEPTIIGVYNHSLCVLLSHNIEN-YYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST------SGHLLL 325 (379)
Q Consensus 255 ~~~~~~l~~~~G~L~l~~~~~~~~-~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l~~ 325 (379)
....++..+|+|++++...... .-++|.++- ..|+++..++.. ..... .+..++.|+++.+ ...+..
T Consensus 196 --~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-r~~~~-~~~~~~~i~v~GG~~~~~~~~~v~~ 271 (302)
T 2xn4_A 196 --SGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-RRNAG-VCAVNGLLYVVGGDDGSCNLASVEY 271 (302)
T ss_dssp --BSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCE-EEEETTEEEEECCBCSSSBCCCEEE
T ss_pred --ccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc-cccCe-EEEECCEEEEECCcCCCcccccEEE
Confidence 2336778899999998764221 235666664 899987644422 11222 2334678888764 245999
Q ss_pred EeCCCCcEEEeE
Q 039590 326 YDPNTQEMRDLG 337 (379)
Q Consensus 326 yd~~t~~~~~v~ 337 (379)
||+++++|+.+.
T Consensus 272 yd~~~~~W~~~~ 283 (302)
T 2xn4_A 272 YNPTTDKWTVVS 283 (302)
T ss_dssp EETTTTEEEECS
T ss_pred EcCCCCeEEECC
Confidence 999999999986
No 5
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.31 E-value=5.8e-10 Score=101.06 Aligned_cols=209 Identities=11% Similarity=0.095 Sum_probs=135.0
Q ss_pred cceecceEEEecCC---------CCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeec
Q 039590 104 GGPFDGIFCIHGPT---------NDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNE 174 (379)
Q Consensus 104 ~~s~~GLl~~~~~~---------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~ 174 (379)
++..+|.|.+.+.. .+.++++||.|++|..+|+++..+... ....++ + +++.+......
T Consensus 66 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-------~~~~~~---~--~iyv~GG~~~~ 133 (308)
T 1zgk_A 66 GCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI-------GVGVID---G--HIYAVGGSHGC 133 (308)
T ss_dssp EEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC-------EEEEET---T--EEEEECCEETT
T ss_pred EEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCcccc-------EEEEEC---C--EEEEEcCCCCC
Confidence 34456666665221 236899999999999999877654332 111121 1 45554332211
Q ss_pred ccccceeeeEEEEEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecCCC-CccEEEEEECCCceEEEecC-CC
Q 039590 175 KRQEIYEFAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNN-DHAVILSFHLGNDVFEEVQE-PY 252 (379)
Q Consensus 175 ~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~~~i~~fD~~~e~~~~i~~-P~ 252 (379)
.....+++|+..+++|+.++ .++.......++.++|.+|.+.+.... ....+..||+.+++|+.++- |.
T Consensus 134 -----~~~~~~~~yd~~~~~W~~~~----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~ 204 (308)
T 1zgk_A 134 -----IHHNSVERYEPERDEWHLVA----PMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT 204 (308)
T ss_dssp -----EECCCEEEEETTTTEEEECC----CCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSS
T ss_pred -----cccccEEEECCCCCeEeECC----CCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC
Confidence 11233449999999999998 343334456678889999999875421 13579999999999998853 33
Q ss_pred CCCCCCcEEEEECCeEEEEEEcCC-CCEEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEEEe------CCEE
Q 039590 253 IPQSEPTIIGVYNHSLCVLLSHNI-ENYYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST------SGHL 323 (379)
Q Consensus 253 ~~~~~~~~l~~~~G~L~l~~~~~~-~~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l 323 (379)
.. .....+..+|+|++++.... ...-++|+++- ..|+++..++.. .. ..-.+..++.|+++.+ ...+
T Consensus 205 ~r--~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~-~~~~~~~~~~i~v~GG~~~~~~~~~v 280 (308)
T 1zgk_A 205 IR--SGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR-RS-ALGITVHQGRIYVLGGYDGHTFLDSV 280 (308)
T ss_dssp CC--BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC-CB-SCEEEEETTEEEEECCBCSSCBCCEE
T ss_pred cc--ccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCC-cc-ceEEEEECCEEEEEcCcCCCcccceE
Confidence 22 23367778999999987642 22345666664 899987644322 11 2222334678888754 3579
Q ss_pred EEEeCCCCcEEEeE
Q 039590 324 LLYDPNTQEMRDLG 337 (379)
Q Consensus 324 ~~yd~~t~~~~~v~ 337 (379)
..||+++++|+++.
T Consensus 281 ~~yd~~~~~W~~~~ 294 (308)
T 1zgk_A 281 ECYDPDTDTWSEVT 294 (308)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEcCCCCEEeecC
Confidence 99999999999986
No 6
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.27 E-value=8e-10 Score=99.66 Aligned_cols=209 Identities=11% Similarity=0.095 Sum_probs=134.2
Q ss_pred cceecceEEEe-cCC----CCeEEEEecCCCc---eecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecc
Q 039590 104 GGPFDGIFCIH-GPT----NDRLILCNLETKE---SRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEK 175 (379)
Q Consensus 104 ~~s~~GLl~~~-~~~----~~~~~V~NP~T~~---~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~ 175 (379)
.+..+|.|.+. +.. .+.++++||.|++ |..+++++..+..+ ....++ =+++.+......
T Consensus 58 ~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~-------~~~~~~-----~~lyv~GG~~~~- 124 (301)
T 2vpj_A 58 SVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA-------GATTLG-----DMIYVSGGFDGS- 124 (301)
T ss_dssp EEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC-------EEEEET-----TEEEEECCBCSS-
T ss_pred EEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce-------eEEEEC-----CEEEEEcccCCC-
Confidence 44456666655 221 2369999999999 99998877654432 111121 145554322111
Q ss_pred cccceeeeEEEEEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecCC-CCccEEEEEECCCceEEEec-CCCC
Q 039590 176 RQEIYEFAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRN-NDHAVILSFHLGNDVFEEVQ-EPYI 253 (379)
Q Consensus 176 ~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~i~~fD~~~e~~~~i~-~P~~ 253 (379)
.....+++|+..+++|+.++ +++.....+.++.++|.+|.+++... .....+..||+.+++|+.++ +|..
T Consensus 125 ----~~~~~~~~~d~~~~~W~~~~----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 196 (301)
T 2vpj_A 125 ----RRHTSMERYDPNIDQWSMLG----DMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATK 196 (301)
T ss_dssp ----CBCCEEEEEETTTTEEEEEE----ECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSC
T ss_pred ----cccceEEEEcCCCCeEEECC----CCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcc
Confidence 11234559999999999988 33333345667888999999987542 12357999999999999885 3333
Q ss_pred CCCCCcEEEEECCeEEEEEEcCCCC-EEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEEEeC------CEEE
Q 039590 254 PQSEPTIIGVYNHSLCVLLSHNIEN-YYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTS------GHLL 324 (379)
Q Consensus 254 ~~~~~~~l~~~~G~L~l~~~~~~~~-~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~------~~l~ 324 (379)
. .....+..+|+|++++...... .-++|.++- ..|+++..++. +..... .+..++.|+++.+. ..+.
T Consensus 197 r--~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~-~~~~~~~i~v~GG~~~~~~~~~v~ 272 (301)
T 2vpj_A 197 R--SGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT-PRCYVG-ATVLRGRLYAIAGYDGNSLLSSIE 272 (301)
T ss_dssp C--BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS-CCBSCE-EEEETTEEEEECCBCSSSBEEEEE
T ss_pred c--ccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC-ccccee-EEEECCEEEEEcCcCCCcccccEE
Confidence 2 2346778899999998764221 334555554 89998764432 222222 23336788877641 4789
Q ss_pred EEeCCCCcEEEeE
Q 039590 325 LYDPNTQEMRDLG 337 (379)
Q Consensus 325 ~yd~~t~~~~~v~ 337 (379)
.||+++++|+.+.
T Consensus 273 ~yd~~~~~W~~~~ 285 (301)
T 2vpj_A 273 CYDPIIDSWEVVT 285 (301)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEcCCCCeEEEcC
Confidence 9999999999886
No 7
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=99.26 E-value=5.1e-10 Score=103.54 Aligned_cols=241 Identities=14% Similarity=0.108 Sum_probs=141.8
Q ss_pred cceecceEEEe-cCCCCeEEEEecC--CCceecCCCCc-ccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccc
Q 039590 104 GGPFDGIFCIH-GPTNDRLILCNLE--TKESRTLPKRR-VVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEI 179 (379)
Q Consensus 104 ~~s~~GLl~~~-~~~~~~~~V~NP~--T~~~~~LP~~~-~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~ 179 (379)
.+..+|.|.+. +...+.++++||. +++|..+|+++ ..+..+ ....++ + +++.+...........
T Consensus 15 ~~~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~-------~~~~~~---~--~lyv~GG~~~~~~~~~ 82 (357)
T 2uvk_A 15 GAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQA-------TSAFID---G--NLYVFGGIGKNSEGLT 82 (357)
T ss_dssp EEEETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSC-------EEEEET---T--EEEEECCEEECTTSCE
T ss_pred EEEECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccc-------eEEEEC---C--EEEEEcCCCCCCCccc
Confidence 33447777666 3334469999998 48999999877 444322 111221 2 3444433311000011
Q ss_pred eeeeEEEEEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecCCC-----------------------------
Q 039590 180 YEFAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNN----------------------------- 230 (379)
Q Consensus 180 ~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~----------------------------- 230 (379)
.....+++|+..+++|+.+..++ |.....+.++.++|.+|.+.+....
T Consensus 83 ~~~~~v~~yd~~~~~W~~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (357)
T 2uvk_A 83 QVFNDVHKYNPKTNSWVKLMSHA---PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDK 159 (357)
T ss_dssp EECCCEEEEETTTTEEEECSCCC---SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred eeeccEEEEeCCCCcEEECCCCC---CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccc
Confidence 22344559999999999998322 1223345567799999999875310
Q ss_pred ------CccEEEEEECCCceEEEec-CCCCCCCCCcEEEEECCeEEEEEEcCCC--CEEEEEEEc---C-CeEEEEEEEC
Q 039590 231 ------DHAVILSFHLGNDVFEEVQ-EPYIPQSEPTIIGVYNHSLCVLLSHNIE--NYYDIWVMK---D-KCWIKQLSVG 297 (379)
Q Consensus 231 ------~~~~i~~fD~~~e~~~~i~-~P~~~~~~~~~l~~~~G~L~l~~~~~~~--~~i~iW~l~---~-~~W~~~~~i~ 297 (379)
....+..||+.+++|+.+. +|... .....++..+|+|++++..... ..-++|.++ + ..|+++..++
T Consensus 160 ~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~ 238 (357)
T 2uvk_A 160 KAEDYFFNKFLLSFDPSTQQWSYAGESPWYG-TAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVS 238 (357)
T ss_dssp CGGGGCCCCEEEEEETTTTEEEEEEECSSCC-CBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSS
T ss_pred cccccCCcccEEEEeCCCCcEEECCCCCCCC-cccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCC
Confidence 1258999999999999884 44332 1224777889999999765311 233566654 2 8999876553
Q ss_pred CCCCcccceEEeeCCeEEEEEeC-----------------------CEEEEEeCCCCcEEEeEEeeccc--ee-EEEeee
Q 039590 298 PFVGVQRPLGFWKKGAFFVVSTS-----------------------GHLLLYDPNTQEMRDLGVTCFDV--SV-HMYKES 351 (379)
Q Consensus 298 ~~~~~~~~~~~~~~~~il~~~~~-----------------------~~l~~yd~~t~~~~~v~~~~~~~--~~-~~y~~s 351 (379)
..........+..++.|+++.+. ..+..||+++++|+++.-..... .. ..+...
T Consensus 239 ~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~ 318 (357)
T 2uvk_A 239 SPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNS 318 (357)
T ss_dssp TTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTE
T ss_pred CCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCE
Confidence 22222222234446788887641 25789999999999987322211 12 556666
Q ss_pred eeecCCCCC
Q 039590 352 LIRLKGGDN 360 (379)
Q Consensus 352 l~~~~~~~~ 360 (379)
+.-+++.+.
T Consensus 319 i~v~GG~~~ 327 (357)
T 2uvk_A 319 LLIIGGETA 327 (357)
T ss_dssp EEEEEEECG
T ss_pred EEEEeeeCC
Confidence 666666543
No 8
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.21 E-value=3.1e-09 Score=96.07 Aligned_cols=216 Identities=9% Similarity=-0.018 Sum_probs=137.3
Q ss_pred CCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCcccc
Q 039590 118 NDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRD 197 (379)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 197 (379)
...+.++||.|++|..++.++..+..+ .+. .++ . +++.+.... ......+++|+..+++|+.
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~------~~~-~~~----~-~lyv~GG~~------~~~~~~~~~~d~~~~~W~~ 84 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRDA------ACV-FWD----N-VVYILGGSQ------LFPIKRMDCYNVVKDSWYS 84 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBSC------EEE-EET----T-EEEEECCBS------SSBCCEEEEEETTTTEEEE
T ss_pred CceEEEecCCCCCEecCCCCCccccee------EEE-EEC----C-EEEEEeCCC------CCCcceEEEEeCCCCeEEE
Confidence 346999999999999998877654332 111 111 1 344443221 1123445599999999999
Q ss_pred cccccCCcceeeeccccEEECceEeeEeecCC--CCccEEEEEECCCceEEEec-CCCCCCCCCcEEEEECCeEEEEEEc
Q 039590 198 LKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRN--NDHAVILSFHLGNDVFEEVQ-EPYIPQSEPTIIGVYNHSLCVLLSH 274 (379)
Q Consensus 198 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~~i~~fD~~~e~~~~i~-~P~~~~~~~~~l~~~~G~L~l~~~~ 274 (379)
++ +++.....+.++.++|.+|.+.+... .....+..||+.+++|+.++ +|... .....+..+|+|++++..
T Consensus 85 ~~----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~ 158 (306)
T 3ii7_A 85 KL----GPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQR--CSHGMVEANGLIYVCGGS 158 (306)
T ss_dssp EE----CCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCC--BSCEEEEETTEEEEECCE
T ss_pred CC----CCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCc--ceeEEEEECCEEEEECCC
Confidence 98 34333445667888999999987541 22357999999999999884 34332 233677889999999875
Q ss_pred CCC-C----EEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEEEe------CCEEEEEeCCCCcEEEeEEeec
Q 039590 275 NIE-N----YYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST------SGHLLLYDPNTQEMRDLGVTCF 341 (379)
Q Consensus 275 ~~~-~----~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l~~yd~~t~~~~~v~~~~~ 341 (379)
... . .-++|.++- ..|+++..++. +. ...-.+..++.|+++.+ ...+..||+++++|+.+.-...
T Consensus 159 ~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r-~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~ 236 (306)
T 3ii7_A 159 LGNNVSGRVLNSCEVYDPATETWTELCPMIE-AR-KNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW 236 (306)
T ss_dssp ESCTTTCEECCCEEEEETTTTEEEEECCCSS-CC-BSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSC
T ss_pred CCCCCcccccceEEEeCCCCCeEEECCCccc-hh-hcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCC
Confidence 321 1 345666654 89998764432 11 12222333678887753 2569999999999999863111
Q ss_pred -c-cee-EEEeeeeeecCCCC
Q 039590 342 -D-VSV-HMYKESLIRLKGGD 359 (379)
Q Consensus 342 -~-~~~-~~y~~sl~~~~~~~ 359 (379)
. ... ..+...+.-+++.+
T Consensus 237 ~r~~~~~~~~~~~i~v~GG~~ 257 (306)
T 3ii7_A 237 KGVTVKCAAVGSIVYVLAGFQ 257 (306)
T ss_dssp CBSCCEEEEETTEEEEEECBC
T ss_pred CccceeEEEECCEEEEEeCcC
Confidence 1 122 45555666666543
No 9
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.19 E-value=5.3e-09 Score=94.31 Aligned_cols=216 Identities=10% Similarity=0.103 Sum_probs=136.5
Q ss_pred CeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCccccc
Q 039590 119 DRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDL 198 (379)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 198 (379)
+.+.++||.+++|..++.++..+..+ ..+ .++ =+++.+...... .....+++|+..+++|+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~-----~~~--~~~-----~~lyv~GG~~~~-----~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRA-----GMV--YMA-----GLVFAVGGFNGS-----LRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSC-----EEE--EET-----TEEEEESCBCSS-----SBCCCEEEEETTTTEEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccc-----eEE--EEC-----CEEEEEeCcCCC-----ccccceEEECCCCCceeeC
Confidence 35899999999999998776544322 111 111 134444322111 1123445999999999999
Q ss_pred ccccCCcceeeeccccEEECceEeeEeecCC-CCccEEEEEECCCceEEEecC-CCCCCCCCcEEEEECCeEEEEEEcCC
Q 039590 199 KSFKSDHYVMSFWSGSLYVDGVCYWLSRFRN-NDHAVILSFHLGNDVFEEVQE-PYIPQSEPTIIGVYNHSLCVLLSHNI 276 (379)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~i~~fD~~~e~~~~i~~-P~~~~~~~~~l~~~~G~L~l~~~~~~ 276 (379)
+ +++.....+.++.++|.+|.+.+... .....+..||+.+++|+.++. |... .....+..+|+|++++....
T Consensus 93 ~----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~ 166 (302)
T 2xn4_A 93 A----NMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRR--SSVGVGVVGGLLYAVGGYDV 166 (302)
T ss_dssp C----CCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCC--BSCEEEEETTEEEEECCEET
T ss_pred C----CCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcc--cCceEEEECCEEEEEeCCCC
Confidence 8 34333445667888999999987542 123468999999999999853 3322 23467788999999987532
Q ss_pred CC---EEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEEEe------CCEEEEEeCCCCcEEEeEEeecc--c
Q 039590 277 EN---YYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST------SGHLLLYDPNTQEMRDLGVTCFD--V 343 (379)
Q Consensus 277 ~~---~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l~~yd~~t~~~~~v~~~~~~--~ 343 (379)
.. .-++|..+- ..|+++..++. +.. ..-.+..++.|+++.+ ...+..||+++++|+.+.-.... .
T Consensus 167 ~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~ 244 (302)
T 2xn4_A 167 ASRQCLSTVECYNATTNEWTYIAEMST-RRS-GAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN 244 (302)
T ss_dssp TTTEECCCEEEEETTTTEEEEECCCSS-CCB-SCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred CCCccccEEEEEeCCCCcEEECCCCcc-ccc-cccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc
Confidence 21 234566654 89998854432 221 2222334678888764 24799999999999998732211 1
Q ss_pred ee-EEEeeeeeecCCCC
Q 039590 344 SV-HMYKESLIRLKGGD 359 (379)
Q Consensus 344 ~~-~~y~~sl~~~~~~~ 359 (379)
.. ..+...+.-+++.+
T Consensus 245 ~~~~~~~~~i~v~GG~~ 261 (302)
T 2xn4_A 245 AGVCAVNGLLYVVGGDD 261 (302)
T ss_dssp CEEEEETTEEEEECCBC
T ss_pred CeEEEECCEEEEECCcC
Confidence 22 55566666666643
No 10
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.17 E-value=6.3e-09 Score=93.71 Aligned_cols=216 Identities=12% Similarity=0.087 Sum_probs=137.1
Q ss_pred CeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCc---c
Q 039590 119 DRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNS---W 195 (379)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~---W 195 (379)
+.++++||.|++|..+|.++..+..+ .....+ + +++.+..... ......+++|+..+++ |
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~-------~~~~~~---~--~l~v~GG~~~-----~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYV-------ASVSLH---D--RIYVIGGYDG-----RSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSC-------EEEEET---T--EEEEECCBCS-----SCBCCCEEEEETTCCTTCCC
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccc-------cEEEEC---C--EEEEEcCCCC-----CccCceEEEEECCCCCCCee
Confidence 36899999999999999776544322 111111 1 4444432211 1122345599999999 9
Q ss_pred cccccccCCcceeeeccccEEECceEeeEeecCCC-CccEEEEEECCCceEEEec-CCCCCCCCCcEEEEECCeEEEEEE
Q 039590 196 RDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNN-DHAVILSFHLGNDVFEEVQ-EPYIPQSEPTIIGVYNHSLCVLLS 273 (379)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~~~i~~fD~~~e~~~~i~-~P~~~~~~~~~l~~~~G~L~l~~~ 273 (379)
+.++ +++.....+.++.++|.+|.+.+.... ....+..||+.+.+|+.++ +|... .....+..+|+|++++.
T Consensus 94 ~~~~----~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG 167 (301)
T 2vpj_A 94 YSVA----PMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAR--EGAGLVVASGVIYCLGG 167 (301)
T ss_dssp EEEC----CCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCC--BSCEEEEETTEEEEECC
T ss_pred EECC----CCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCc--ccceEEEECCEEEEECC
Confidence 9998 343333456678889999999875421 2357999999999999885 34332 23367778999999987
Q ss_pred cCCC-CEEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEEEe------CCEEEEEeCCCCcEEEeEEeecc--
Q 039590 274 HNIE-NYYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST------SGHLLLYDPNTQEMRDLGVTCFD-- 342 (379)
Q Consensus 274 ~~~~-~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l~~yd~~t~~~~~v~~~~~~-- 342 (379)
.... ..-++|.++- ..|+++..++. +. ...-.+..++.|+++.+ ...+..||+++++|+.+.-....
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r-~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 245 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMAT-KR-SGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC 245 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSS-CC-BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCc-cc-ccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc
Confidence 6422 2334566664 89998754432 22 12223334678888764 25799999999999998732111
Q ss_pred cee-EEEeeeeeecCCCC
Q 039590 343 VSV-HMYKESLIRLKGGD 359 (379)
Q Consensus 343 ~~~-~~y~~sl~~~~~~~ 359 (379)
... ..+...|.-+++.+
T Consensus 246 ~~~~~~~~~~i~v~GG~~ 263 (301)
T 2vpj_A 246 YVGATVLRGRLYAIAGYD 263 (301)
T ss_dssp SCEEEEETTEEEEECCBC
T ss_pred ceeEEEECCEEEEEcCcC
Confidence 122 55566666666643
No 11
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.16 E-value=8.3e-09 Score=93.68 Aligned_cols=199 Identities=9% Similarity=0.040 Sum_probs=125.2
Q ss_pred eEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeec-ccccceeeeEEEEEEcCCCccccc
Q 039590 120 RLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNE-KRQEIYEFAHVAMYNLRTNSWRDL 198 (379)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~-~~~~~~~~~~~~vyss~~~~W~~~ 198 (379)
.+.++||.|++|.. ++++....+. .++... ..+ +++.+...... ..........+++|+..+++|+.+
T Consensus 14 ~~~~yd~~~~~W~~-~~~~~p~~r~------~~~~~~--~~~--~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 14 GAVAYDPAANECYC-ASLSSQVPKN------HVSLVT--KEN--QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEEETTTTEEEE-EECCCCSCSS------EEEEEC--TTC--CEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred ceEEECCCCCeEec-CCCCCCCCcc------ceEEEE--ECC--EEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 48999999999986 4333221111 122221 122 23333332111 111122233466999999999998
Q ss_pred ccccCCcceeeeccccEEECceEeeEeecC----CCCccEEEEEECCCceEEEec-CCCCCCCCCcEEEEECCeEEEEEE
Q 039590 199 KSFKSDHYVMSFWSGSLYVDGVCYWLSRFR----NNDHAVILSFHLGNDVFEEVQ-EPYIPQSEPTIIGVYNHSLCVLLS 273 (379)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~----~~~~~~i~~fD~~~e~~~~i~-~P~~~~~~~~~l~~~~G~L~l~~~ 273 (379)
+ +++..+..+..+.++|.+|.+.+.. ......+..||+.+.+|+.++ +|... .....+..+|+|++++.
T Consensus 83 ~----~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG 156 (315)
T 4asc_A 83 P----PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVV--YGHTVLSHMDLVYVIGG 156 (315)
T ss_dssp C----CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCC--BSCEEEEETTEEEEECC
T ss_pred C----CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcc--cceeEEEECCEEEEEeC
Confidence 8 3444444667788999999998743 223457999999999999875 34332 33467789999999987
Q ss_pred cC--CCCEEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEEEe------CCEEEEEeCCCCcEEEeE
Q 039590 274 HN--IENYYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST------SGHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 274 ~~--~~~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l~~yd~~t~~~~~v~ 337 (379)
.. ....-++|.++- .+|+++..++. +.. ..-.+.-++.|+++.+ ...+..||+++++|+.+.
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 228 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKELAPMQT-ARS-LFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFE 228 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEECCCCSS-CCB-SCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEEC
T ss_pred CCCCCcccceEEEEeCCCCeEEECCCCCC-chh-ceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECC
Confidence 62 222345666665 89998764432 221 2223334678888764 136999999999999987
No 12
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.14 E-value=4.4e-09 Score=95.21 Aligned_cols=220 Identities=13% Similarity=0.032 Sum_probs=136.4
Q ss_pred CeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCccccc
Q 039590 119 DRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDL 198 (379)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 198 (379)
+.+.++||.|++|..++.++..+... .+. ..+ + +++.+....... ........+++|+..+++|+.+
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~------~~~-~~~---~--~lyv~GG~~~~~-~~~~~~~~~~~~d~~~~~W~~~ 105 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGL------AGC-VVG---G--LLYAVGGRNNSP-DGNTDSSALDCYNPMTNQWSPC 105 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSC------EEE-EET---T--EEEEECCEEEET-TEEEECCCEEEEETTTTEEEEC
T ss_pred ceEEEEcCCCCeEeECCCCCcccccc------eEE-EEC---C--EEEEECCCcCCC-CCCeecceEEEECCCCCeEeEC
Confidence 46899999999999998777654322 111 111 1 344443221000 0011223455999999999999
Q ss_pred ccccCCcceeeeccccEEECceEeeEeecCC-CCccEEEEEECCCceEEEec-CCCCCCCCCcEEEEECCeEEEEEEcCC
Q 039590 199 KSFKSDHYVMSFWSGSLYVDGVCYWLSRFRN-NDHAVILSFHLGNDVFEEVQ-EPYIPQSEPTIIGVYNHSLCVLLSHNI 276 (379)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~i~~fD~~~e~~~~i~-~P~~~~~~~~~l~~~~G~L~l~~~~~~ 276 (379)
+ +++........+.++|.+|.+.+... .....+..||+.+++|+.++ +|... .....+..+|+|++++....
T Consensus 106 ~----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~ 179 (308)
T 1zgk_A 106 A----PMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRR--IGVGVAVLNRLLYAVGGFDG 179 (308)
T ss_dssp C----CCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCC--BSCEEEEETTEEEEECCBCS
T ss_pred C----CCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccc--cceEEEEECCEEEEEeCCCC
Confidence 8 33333345667888999999976542 11246899999999999885 34332 23366778999999987642
Q ss_pred C-CEEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEEEe------CCEEEEEeCCCCcEEEeEEeec-c-cee
Q 039590 277 E-NYYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST------SGHLLLYDPNTQEMRDLGVTCF-D-VSV 345 (379)
Q Consensus 277 ~-~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l~~yd~~t~~~~~v~~~~~-~-~~~ 345 (379)
. ..-++|.++- ..|+++..++. +.... -.+.-++.|+++.+ ...+..||+++++|+++.-... . ...
T Consensus 180 ~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~-~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~ 257 (308)
T 1zgk_A 180 TNRLNSAECYYPERNEWRMITAMNT-IRSGA-GVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALG 257 (308)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSS-CCBSC-EEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE
T ss_pred CCcCceEEEEeCCCCeEeeCCCCCC-ccccc-eEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceE
Confidence 2 1334565554 89998754432 22222 22333678888764 2579999999999999872111 1 122
Q ss_pred -EEEeeeeeecCCCC
Q 039590 346 -HMYKESLIRLKGGD 359 (379)
Q Consensus 346 -~~y~~sl~~~~~~~ 359 (379)
..+...|.-+++.+
T Consensus 258 ~~~~~~~i~v~GG~~ 272 (308)
T 1zgk_A 258 ITVHQGRIYVLGGYD 272 (308)
T ss_dssp EEEETTEEEEECCBC
T ss_pred EEEECCEEEEEcCcC
Confidence 55566666666643
No 13
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.02 E-value=8.1e-11 Score=76.74 Aligned_cols=40 Identities=25% Similarity=0.664 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHhcCCcchhhhheeccccccccccChhhHh
Q 039590 7 NFPEDVMIEVLSRLSVKSLLRFKCVCREWCSLFENPSFIS 46 (379)
Q Consensus 7 ~LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~s~~F~~ 46 (379)
.||+|++.+||++||++++.++++|||+|+.++.++.|-+
T Consensus 11 ~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~ 50 (53)
T 1fs1_A 11 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ 50 (53)
T ss_dssp SSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred HCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 7999999999999999999999999999999999998754
No 14
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=99.01 E-value=7.9e-11 Score=104.26 Aligned_cols=46 Identities=22% Similarity=0.521 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHhcCCcchhh-hheeccccccccccChhhHhhhhccC
Q 039590 7 NFPEDVMIEVLSRLSVKSLL-RFKCVCREWCSLFENPSFISKHLSND 52 (379)
Q Consensus 7 ~LP~Dll~~IL~rLP~~sl~-r~r~VcK~W~~li~s~~F~~~~~~~~ 52 (379)
.||+|||.+||+|||+++|+ ||++|||+|+++++++.|.+.+..+.
T Consensus 53 ~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~ 99 (297)
T 2e31_A 53 ELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE 99 (297)
T ss_dssp SSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence 79999999999999999999 99999999999999999999887764
No 15
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=98.99 E-value=2.2e-08 Score=100.91 Aligned_cols=211 Identities=12% Similarity=0.151 Sum_probs=130.1
Q ss_pred ecceEEEecC----CCCeEEEEecCCCceecCC-C-----CcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeeccc
Q 039590 107 FDGIFCIHGP----TNDRLILCNLETKESRTLP-K-----RRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKR 176 (379)
Q Consensus 107 ~~GLl~~~~~----~~~~~~V~NP~T~~~~~LP-~-----~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~ 176 (379)
.+|.|.+.+. ..+.++++||.|++|..++ + ++..+..+ ....+ ...+ +++.+......
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~h-----s~~~~---~~~~--~lyv~GG~~~~-- 463 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCH-----TFTTI---SRNN--QLLLIGGRKAP-- 463 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSC-----EEEEE---TTTT--EEEEECCBSST--
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccce-----EEEEE---ccCC--EEEEEcCCCCC--
Confidence 4566555522 2346999999999999988 4 22222211 11221 1011 34444332111
Q ss_pred ccceeeeEEEEEEcCCCcccccccccCCcceeeeccccEEE-CceEeeEeecCCCCccEEEEEECCCceEEEec----CC
Q 039590 177 QEIYEFAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYV-DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQ----EP 251 (379)
Q Consensus 177 ~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~-~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~----~P 251 (379)
......+++|+..+++|+.++ +++.....+.++.+ +|.+|.+++..... .+..||+.+++|+.+. +|
T Consensus 464 --~~~~~dv~~yd~~t~~W~~~~----~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p 535 (695)
T 2zwa_A 464 --HQGLSDNWIFDMKTREWSMIK----SLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFF 535 (695)
T ss_dssp --TCBCCCCEEEETTTTEEEECC----CCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGG
T ss_pred --CCccccEEEEeCCCCcEEECC----CCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCC
Confidence 111233459999999999998 44444445666775 99999998765322 7999999999999886 44
Q ss_pred CCCCCCCcEEEEEC---CeEEEEEEcCC-----CCEEEEEEEcCCe------EEEEEEECCCCCcccceEEeeCCeEEEE
Q 039590 252 YIPQSEPTIIGVYN---HSLCVLLSHNI-----ENYYDIWVMKDKC------WIKQLSVGPFVGVQRPLGFWKKGAFFVV 317 (379)
Q Consensus 252 ~~~~~~~~~l~~~~---G~L~l~~~~~~-----~~~i~iW~l~~~~------W~~~~~i~~~~~~~~~~~~~~~~~il~~ 317 (379)
...... ..+..+ |+|++++.... ...+.+|-++... |+++...++.+.......+.+++.|+++
T Consensus 536 ~~r~~~--~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~ 613 (695)
T 2zwa_A 536 QNSLVS--AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIV 613 (695)
T ss_dssp GSCCBS--CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEE
T ss_pred Ccccce--eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEE
Confidence 333222 333334 89999987631 2344444554455 8888765434443444445554888888
Q ss_pred Ee---------CCEEEEEeCCCCcEEEeEEe
Q 039590 318 ST---------SGHLLLYDPNTQEMRDLGVT 339 (379)
Q Consensus 318 ~~---------~~~l~~yd~~t~~~~~v~~~ 339 (379)
.+ ...+..||+++++|+.+.+.
T Consensus 614 GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~p 644 (695)
T 2zwa_A 614 GGTSPSGLFDRTNSIISLDPLSETLTSIPIS 644 (695)
T ss_dssp CCBCSSCCCCTTTSEEEEETTTTEEEECCCC
T ss_pred CCccCCCCCCCCCeEEEEECCCCeEEEeecc
Confidence 65 24699999999999976653
No 16
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=98.98 E-value=4.5e-08 Score=88.90 Aligned_cols=230 Identities=12% Similarity=0.053 Sum_probs=135.2
Q ss_pred cceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecc-cccceeeeEEE
Q 039590 108 DGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEK-RQEIYEFAHVA 186 (379)
Q Consensus 108 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~-~~~~~~~~~~~ 186 (379)
++.|++.+.. .+.++||.|++|...|.+. ...+. ..+... ..+ +++.+.....+. .........++
T Consensus 15 ~~~i~~~GG~--~~~~yd~~~~~W~~~~~~~-~~~r~------~~~~~~--~~~--~lyv~GG~~~~~~~~~~~~~~~~~ 81 (318)
T 2woz_A 15 KDLILLVNDT--AAVAYDPMENECYLTALAE-QIPRN------HSSIVT--QQN--QVYVVGGLYVDEENKDQPLQSYFF 81 (318)
T ss_dssp EEEEEEECSS--EEEEEETTTTEEEEEEECT-TSCSS------EEEEEC--SSS--CEEEEESSCC-------CCCBEEE
T ss_pred cchhhhcccc--ceEEECCCCCceecccCCc-cCCcc------ceEEEE--ECC--EEEEECCcccCccccCCCccccEE
Confidence 3455555433 3789999999999844321 11111 122221 112 233343211000 00011122355
Q ss_pred EEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecCC---CCccEEEEEECCCceEEEec-CCCCCCCCCcEEE
Q 039590 187 MYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRN---NDHAVILSFHLGNDVFEEVQ-EPYIPQSEPTIIG 262 (379)
Q Consensus 187 vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~---~~~~~i~~fD~~~e~~~~i~-~P~~~~~~~~~l~ 262 (379)
+|+..+++|+.++ +++.....+..+.++|.+|.+.+... .....+..||+.+.+|+.+. +|... .....+
T Consensus 82 ~~d~~~~~W~~~~----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~~~~~~ 155 (318)
T 2woz_A 82 QLDNVSSEWVGLP----PLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKV--YGHNVI 155 (318)
T ss_dssp EEETTTTEEEECS----CBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCE--ESCEEE
T ss_pred EEeCCCCcEEECC----CCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcc--cccEEE
Confidence 9999999999998 33333345667888999999987641 22357999999999999885 44332 223667
Q ss_pred EECCeEEEEEEcC--CCCEEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEEEe------CCEEEEEeCCCCc
Q 039590 263 VYNHSLCVLLSHN--IENYYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST------SGHLLLYDPNTQE 332 (379)
Q Consensus 263 ~~~G~L~l~~~~~--~~~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l~~yd~~t~~ 332 (379)
..+|+|++++... ....-++|.++- ..|+++..++. +.... -.+..++.|+++.+ ...+..||+++++
T Consensus 156 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 156 SHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKT-PRSMF-GVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSS-CCBSC-EEEEETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCC-Ccccc-eEEEECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 7999999998752 112335666665 89998754432 22122 22334678888764 2468899999999
Q ss_pred EEEeEEeec-cce-e-EEEeeeeeecCCC
Q 039590 333 MRDLGVTCF-DVS-V-HMYKESLIRLKGG 358 (379)
Q Consensus 333 ~~~v~~~~~-~~~-~-~~y~~sl~~~~~~ 358 (379)
|+.+.-... ... . ..+...|.-+++.
T Consensus 234 W~~~~~~p~~r~~~~~~~~~~~i~v~GG~ 262 (318)
T 2woz_A 234 WEVMTEFPQERSSISLVSLAGSLYAIGGF 262 (318)
T ss_dssp EEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred EEECCCCCCcccceEEEEECCEEEEECCe
Confidence 999873211 111 2 5556666666654
No 17
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=98.92 E-value=1e-07 Score=87.97 Aligned_cols=217 Identities=9% Similarity=0.062 Sum_probs=126.2
Q ss_pred ccceecceEEEecCC----------CCeEEEEecCCCceecCCCCc-ccCCCcccCCccEEEEeeecCCCceEEEEEEEE
Q 039590 103 LGGPFDGIFCIHGPT----------NDRLILCNLETKESRTLPKRR-VVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSL 171 (379)
Q Consensus 103 ~~~s~~GLl~~~~~~----------~~~~~V~NP~T~~~~~LP~~~-~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~ 171 (379)
..+..+|.|.+.+.. .+.+.++||.|++|..+++++ ..+..+ ....++ + +++.+...
T Consensus 60 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~-------~~~~~~---~--~iyv~GG~ 127 (357)
T 2uvk_A 60 TSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGH-------VTFVHN---G--KAYVTGGV 127 (357)
T ss_dssp EEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSE-------EEEEET---T--EEEEEECC
T ss_pred eEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccc-------eEEEEC---C--EEEEEeCc
Confidence 344556766665221 236999999999999998766 322211 111122 1 45555432
Q ss_pred eeccc-----------------------------ccceeeeEEEEEEcCCCcccccccccCCcceeee-ccccEEECceE
Q 039590 172 WNEKR-----------------------------QEIYEFAHVAMYNLRTNSWRDLKSFKSDHYVMSF-WSGSLYVDGVC 221 (379)
Q Consensus 172 ~~~~~-----------------------------~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~-~~~~v~~~G~l 221 (379)
..... ........+++|+..+++|+.++ .++.... ....+.++|.+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~----~~p~~~~~~~~~~~~~~~i 203 (357)
T 2uvk_A 128 NQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAG----ESPWYGTAGAAVVNKGDKT 203 (357)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEE----ECSSCCCBSCEEEEETTEE
T ss_pred CCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECC----CCCCCCcccccEEEECCEE
Confidence 11100 00001234559999999999998 3322222 36678889999
Q ss_pred eeEeecCCC--CccEEEEEEC--CCceEEEec-CCCCCCCCCcEEEEECCeEEEEEEcCC------------------CC
Q 039590 222 YWLSRFRNN--DHAVILSFHL--GNDVFEEVQ-EPYIPQSEPTIIGVYNHSLCVLLSHNI------------------EN 278 (379)
Q Consensus 222 ywl~~~~~~--~~~~i~~fD~--~~e~~~~i~-~P~~~~~~~~~l~~~~G~L~l~~~~~~------------------~~ 278 (379)
|.+.+.... ....+..||+ .+.+|+.+. +|..........+..+|+|++++.... ..
T Consensus 204 yv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~ 283 (357)
T 2uvk_A 204 WLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKK 283 (357)
T ss_dssp EEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCC
T ss_pred EEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccc
Confidence 999764311 1235778887 899999874 333222223367889999999987421 11
Q ss_pred EEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEEEeC-------CEEEEEeCCCCcEEEeE
Q 039590 279 YYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTS-------GHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 279 ~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~-------~~l~~yd~~t~~~~~v~ 337 (379)
..++|+.+- .+|+++..++.. ... ..++..++.|+++.+. ..+..+++++++|.+..
T Consensus 284 ~~~~~~yd~~~~~W~~~~~~p~~-r~~-~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 284 SYSTDIHLWHNGKWDKSGELSQG-RAY-GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EECCEEEECC---CEEEEECSSC-CBS-SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eeeEEEEecCCCceeeCCCCCCC-ccc-ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 234555554 899998765532 222 2334457788887651 36888999999988754
No 18
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.56 E-value=9.1e-05 Score=70.22 Aligned_cols=42 Identities=14% Similarity=0.410 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHhcCCcchhhhheeccccccccccC-hhhHhhh
Q 039590 7 NFPEDVMIEVLSRLSVKSLLRFKCVCREWCSLFEN-PSFISKH 48 (379)
Q Consensus 7 ~LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~s-~~F~~~~ 48 (379)
.||+||+.+||++||+++|+++..|||+|+.++.+ +..-+..
T Consensus 17 ~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~ 59 (464)
T 3v7d_B 17 SLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL 59 (464)
T ss_dssp HSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHH
T ss_pred HCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 59999999999999999999999999999999998 6655443
No 19
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.54 E-value=9.6e-05 Score=69.80 Aligned_cols=44 Identities=30% Similarity=0.434 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHhcCCcchhhhheeccccccccccChhhHhhhhc
Q 039590 7 NFPEDVMIEVLSRLSVKSLLRFKCVCREWCSLFENPSFISKHLS 50 (379)
Q Consensus 7 ~LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~~~~ 50 (379)
.||+|++..||++|++++|.++.+|||+|+.++.++.+-+....
T Consensus 21 ~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~ 64 (445)
T 2ovr_B 21 LLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 64 (445)
T ss_dssp SSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred HCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence 69999999999999999999999999999999999988776543
No 20
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.51 E-value=2.3e-05 Score=73.93 Aligned_cols=42 Identities=29% Similarity=0.490 Sum_probs=38.1
Q ss_pred CCCHH----HHHHHHhcCCcchhhhheeccccccccccChhhHhhh
Q 039590 7 NFPED----VMIEVLSRLSVKSLLRFKCVCREWCSLFENPSFISKH 48 (379)
Q Consensus 7 ~LP~D----ll~~IL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~~ 48 (379)
.||+| |+..||++|++++|+++.+|||+|+.++.++.+-+..
T Consensus 13 ~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~ 58 (435)
T 1p22_A 13 ALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKL 58 (435)
T ss_dssp HTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHH
T ss_pred HCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 59999 9999999999999999999999999999988765543
No 21
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.26 E-value=4.5e-06 Score=83.57 Aligned_cols=214 Identities=9% Similarity=0.041 Sum_probs=121.8
Q ss_pred ecceEEEec-CCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEE
Q 039590 107 FDGIFCIHG-PTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHV 185 (379)
Q Consensus 107 ~~GLl~~~~-~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~ 185 (379)
.+|.|.+.+ .....+.++||.|++|..++.++..+..+ ....+ + .+ |++.+....... ......+
T Consensus 252 ~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~-------s~~~~-~-dg--~iyv~GG~~~~~--~~~~~~e- 317 (656)
T 1k3i_A 252 GNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQ-------SSATM-S-DG--RVFTIGGSWSGG--VFEKNGE- 317 (656)
T ss_dssp TTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSC-------EEEEC-T-TS--CEEEECCCCCSS--SCCCCEE-
T ss_pred CCCCEEEeCCCCCCceEEecCcCCceeECCCCCcccccc-------ceEEe-c-CC--eEEEEeCcccCC--cccccce-
Confidence 577777773 33446999999999999999877655432 11111 1 11 344443311111 1122345
Q ss_pred EEEEcCCCcccccccccC-CcceeeeccccEEECceEeeEeecCC-----CCccEEEEEECCCceEEEec-CCCC-----
Q 039590 186 AMYNLRTNSWRDLKSFKS-DHYVMSFWSGSLYVDGVCYWLSRFRN-----NDHAVILSFHLGNDVFEEVQ-EPYI----- 253 (379)
Q Consensus 186 ~vyss~~~~W~~~~~~~~-~~~~~~~~~~~v~~~G~lywl~~~~~-----~~~~~i~~fD~~~e~~~~i~-~P~~----- 253 (379)
+|+..+++|+.++.... +++... ....+..+|.+|.+.+... .....+..||+.++.|.... .+..
T Consensus 318 -~yd~~t~~W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~ 395 (656)
T 1k3i_A 318 -VYSPSSKTWTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVA 395 (656)
T ss_dssp -EEETTTTEEEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEEC
T ss_pred -EeCCCCCcceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccC
Confidence 99999999998752110 111111 2233446788887765431 12347899999999986432 1111
Q ss_pred -CCCCCcEEE--EECCeEEEEEEcCC-------CCEEEEEEEcC--CeEEEEE--EECCCCCcccceEEeeCCeEEEEEe
Q 039590 254 -PQSEPTIIG--VYNHSLCVLLSHNI-------ENYYDIWVMKD--KCWIKQL--SVGPFVGVQRPLGFWKKGAFFVVST 319 (379)
Q Consensus 254 -~~~~~~~l~--~~~G~L~l~~~~~~-------~~~i~iW~l~~--~~W~~~~--~i~~~~~~~~~~~~~~~~~il~~~~ 319 (379)
.......++ ..+|+|++++.... .....|++.+. ..|.++. .++ .+....-..+..+|+||++.+
T Consensus 396 ~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp-~~R~~~~~~~l~~g~i~v~GG 474 (656)
T 1k3i_A 396 PDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLY-FARTFHTSVVLPDGSTFITGG 474 (656)
T ss_dssp CCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCS-SCCBSCEEEECTTSCEEEECC
T ss_pred CCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCC-CCcccCCeEECCCCCEEEECC
Confidence 011111222 25899999987521 11224555543 7898765 333 222222233444788888864
Q ss_pred C------------CEEEEEeCCCCcEEEeE
Q 039590 320 S------------GHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 320 ~------------~~l~~yd~~t~~~~~v~ 337 (379)
. ..+..||+++++|+.+.
T Consensus 475 ~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~ 504 (656)
T 1k3i_A 475 QRRGIPFEDSTPVFTPEIYVPEQDTFYKQN 504 (656)
T ss_dssp BSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred cccCcCcCCCCcccceEEEcCCCCceeecC
Confidence 1 46899999999999876
No 22
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.25 E-value=9.1e-06 Score=81.33 Aligned_cols=195 Identities=10% Similarity=0.038 Sum_probs=114.0
Q ss_pred eEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCcccccc
Q 039590 120 RLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDLK 199 (379)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 199 (379)
.+.++||.|++|..++.++..+...+ ....+..| =+++.+.... ....+ +|+..+++|+.++
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~----~~~~~~~~-----g~lyv~GG~~-------~~~v~--~yd~~t~~W~~~~ 281 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFC----PGISMDGN-----GQIVVTGGND-------AKKTS--LYDSSSDSWIPGP 281 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSS----CEEEECTT-----SCEEEECSSS-------TTCEE--EEEGGGTEEEECC
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCcc----ccccCCCC-----CCEEEeCCCC-------CCceE--EecCcCCceeECC
Confidence 58899999999999987655433221 11222111 1344442211 11344 9999999999998
Q ss_pred cccCCcceeeeccccEEE-CceEeeEeecCC--CCccEEEEEECCCceEEEec----CCCCCCCCCcEEEEECCeEEEEE
Q 039590 200 SFKSDHYVMSFWSGSLYV-DGVCYWLSRFRN--NDHAVILSFHLGNDVFEEVQ----EPYIPQSEPTIIGVYNHSLCVLL 272 (379)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~-~G~lywl~~~~~--~~~~~i~~fD~~~e~~~~i~----~P~~~~~~~~~l~~~~G~L~l~~ 272 (379)
+++..++.+.++.+ +|.+|.+.+... .....+..||+.+++|+.++ .|...... ..++..+++++++.
T Consensus 282 ----~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~-~~~~~~~~~iyv~G 356 (656)
T 1k3i_A 282 ----DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK-QGLYRSDNHAWLFG 356 (656)
T ss_dssp ----CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT-TGGGTTTCSCCEEE
T ss_pred ----CCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc-cceeecCCceEEEE
Confidence 44344445566777 999999987421 12356899999999999874 12111111 12334566676666
Q ss_pred EcC-------CCCEEEEEEEcCCeEEEEEEECCC------CCcccceEE--eeCCeEEEEEeC---------C---EEEE
Q 039590 273 SHN-------IENYYDIWVMKDKCWIKQLSVGPF------VGVQRPLGF--WKKGAFFVVSTS---------G---HLLL 325 (379)
Q Consensus 273 ~~~-------~~~~i~iW~l~~~~W~~~~~i~~~------~~~~~~~~~--~~~~~il~~~~~---------~---~l~~ 325 (379)
..+ ....+..|-.+...|.......+. ........+ ..+++|+++.+. . .+..
T Consensus 357 g~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~ 436 (656)
T 1k3i_A 357 WKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITL 436 (656)
T ss_dssp CGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEEC
T ss_pred CCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEc
Confidence 442 134556665555666653322211 111111111 136788887541 1 6889
Q ss_pred EeCCCCcEEEeE
Q 039590 326 YDPNTQEMRDLG 337 (379)
Q Consensus 326 yd~~t~~~~~v~ 337 (379)
||+++++|+++.
T Consensus 437 yd~~~~~W~~~~ 448 (656)
T 1k3i_A 437 GEPGTSPNTVFA 448 (656)
T ss_dssp CSTTSCCEEEEC
T ss_pred CCCCCCCeeEEc
Confidence 999999999875
No 23
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=98.15 E-value=1.9e-05 Score=79.49 Aligned_cols=173 Identities=5% Similarity=-0.027 Sum_probs=113.2
Q ss_pred eEEEEEEcCCCcccccc-cccC-CcceeeeccccEEE--CceEeeEeecCCC--CccEEEEEECCCceEEEec-CCCCCC
Q 039590 183 AHVAMYNLRTNSWRDLK-SFKS-DHYVMSFWSGSLYV--DGVCYWLSRFRNN--DHAVILSFHLGNDVFEEVQ-EPYIPQ 255 (379)
Q Consensus 183 ~~~~vyss~~~~W~~~~-~~~~-~~~~~~~~~~~v~~--~G~lywl~~~~~~--~~~~i~~fD~~~e~~~~i~-~P~~~~ 255 (379)
..+++|+..+++|+.+. .+|. .++..+..+.++.+ +|.+|.+++.... ....+..||+.+.+|+.+. +|...
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R- 490 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTR- 490 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCC-
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCc-
Confidence 34559999999999887 4332 23334446778888 9999999876532 1346899999999999884 34332
Q ss_pred CCCcEEEEE-CCeEEEEEEcCCCCEEEEEEEcC--CeEEEEEEEC--CCCCcccceEEee-C-CeEEEEEeC--------
Q 039590 256 SEPTIIGVY-NHSLCVLLSHNIENYYDIWVMKD--KCWIKQLSVG--PFVGVQRPLGFWK-K-GAFFVVSTS-------- 320 (379)
Q Consensus 256 ~~~~~l~~~-~G~L~l~~~~~~~~~i~iW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~-~-~~il~~~~~-------- 320 (379)
.....+.. +|+|++++...... ++|+.+- ..|+.+.... |.+.......+.. + +.||++.+.
T Consensus 491 -~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~ 567 (695)
T 2zwa_A 491 -FRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVS 567 (695)
T ss_dssp -BSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBC
T ss_pred -ccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeee
Confidence 22356664 99999999875333 7777765 8999876532 1122222222322 2 678887642
Q ss_pred CEEEEEeCCCCc------EEEeEEe-ecc--cee-EEEe-eeeeecCCCC
Q 039590 321 GHLLLYDPNTQE------MRDLGVT-CFD--VSV-HMYK-ESLIRLKGGD 359 (379)
Q Consensus 321 ~~l~~yd~~t~~------~~~v~~~-~~~--~~~-~~y~-~sl~~~~~~~ 359 (379)
..+..||+++++ |+.+.-. ... ... ..+. ..|.-+++..
T Consensus 568 ~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~ 617 (695)
T 2zwa_A 568 DKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTS 617 (695)
T ss_dssp CEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBC
T ss_pred CcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCcc
Confidence 469999999999 7777642 111 122 5666 6777777643
No 24
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.90 E-value=3e-06 Score=74.14 Aligned_cols=47 Identities=26% Similarity=0.339 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHhcCCcchhhhheeccccccccccChhhHhhhhccCC
Q 039590 7 NFPEDVMIEVLSRLSVKSLLRFKCVCREWCSLFENPSFISKHLSNDD 53 (379)
Q Consensus 7 ~LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~~~~~~~ 53 (379)
.||+|++..||+.|++++|+++.+|||+||.+.+++..-+.++.+..
T Consensus 7 ~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~ 53 (312)
T 3l2o_B 7 RLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDL 53 (312)
T ss_dssp HSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSG
T ss_pred hCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccC
Confidence 69999999999999999999999999999999999998887776643
No 25
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.36 E-value=4.6e-05 Score=69.27 Aligned_cols=40 Identities=25% Similarity=0.664 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHhcCCcchhhhheeccccccccccChhhHh
Q 039590 7 NFPEDVMIEVLSRLSVKSLLRFKCVCREWCSLFENPSFIS 46 (379)
Q Consensus 7 ~LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~s~~F~~ 46 (379)
.||+|++.+||.+|+.+++.+++.|||+|+.+..+|...+
T Consensus 11 ~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~ 50 (336)
T 2ast_B 11 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ 50 (336)
T ss_dssp SSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSS
T ss_pred hCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhhe
Confidence 7999999999999999999999999999999998876543
No 26
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.58 E-value=0.00048 Score=67.61 Aligned_cols=32 Identities=31% Similarity=0.643 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHhcCC-cchhhhheecccccccc
Q 039590 7 NFPEDVMIEVLSRLS-VKSLLRFKCVCREWCSL 38 (379)
Q Consensus 7 ~LP~Dll~~IL~rLP-~~sl~r~r~VcK~W~~l 38 (379)
.||+|++.+||.+|| .+++.+++.|||+|+.+
T Consensus 8 ~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 8 SFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp --CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred hCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 799999999999999 99999999999999988
No 27
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.12 E-value=0.0011 Score=65.05 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHhcC-Ccchhhhheecccccccc
Q 039590 7 NFPEDVMIEVLSRL-SVKSLLRFKCVCREWCSL 38 (379)
Q Consensus 7 ~LP~Dll~~IL~rL-P~~sl~r~r~VcK~W~~l 38 (379)
.||||++.+||.+| |.+++.+++.|||+|+.+
T Consensus 15 ~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 15 ATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 59999999999999 899999999999999987
No 28
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=95.53 E-value=0.69 Score=39.85 Aligned_cols=190 Identities=8% Similarity=-0.018 Sum_probs=95.0
Q ss_pred eecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEE
Q 039590 106 PFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHV 185 (379)
Q Consensus 106 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~ 185 (379)
..+|.+.+.......++++|| +++...+..+... ....++..|+... +... . .. ...+
T Consensus 107 ~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~--------~~~~~i~~~~~g~---l~v~-~-~~--------~~~i 164 (299)
T 2z2n_A 107 GPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKG--------SYPSFITLGSDNA---LWFT-E-NQ--------NNAI 164 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTT--------CCEEEEEECTTSC---EEEE-E-TT--------TTEE
T ss_pred CCCCCEEEEecCCceEEEECC-CCCEEEecCCCCC--------CCCceEEEcCCCC---EEEE-e-CC--------CCEE
Confidence 346766666444456899999 7766554322111 1235666665432 2211 1 00 1133
Q ss_pred EEEEcCCCcccccccccCCcceeeeccccEEE--CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEEE
Q 039590 186 AMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYV--DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGV 263 (379)
Q Consensus 186 ~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~ 263 (379)
.+|+. ++...... .+... . ...++.+ +|.+|+.... ...|..||. +.++..+..|... .....+..
T Consensus 165 ~~~~~-~g~~~~~~-~~~~~-~---~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~~~~~~~~~~-~~~~~i~~ 232 (299)
T 2z2n_A 165 GRITE-SGDITEFK-IPTPA-S---GPVGITKGNDDALWFVEII----GNKIGRITT-SGEITEFKIPTPN-ARPHAITA 232 (299)
T ss_dssp EEECT-TCCEEEEE-CSSTT-C---CEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEEECSSTT-CCEEEEEE
T ss_pred EEEcC-CCcEEEee-CCCCC-C---cceeEEECCCCCEEEEccC----CceEEEECC-CCcEEEEECCCCC-CCceeEEE
Confidence 36776 55554432 00011 0 1112333 5787665432 248999999 7777776665322 11224544
Q ss_pred -ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEEEEeCCEEEEEeCCCCcEE
Q 039590 264 -YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMR 334 (379)
Q Consensus 264 -~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~ 334 (379)
.+|.|++.... ...+.+|-.+ ... ..+.++........+.+ .+|.+++....+.+..||+++++++
T Consensus 233 ~~~g~l~v~~~~--~~~i~~~d~~-g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~~~~ 299 (299)
T 2z2n_A 233 GAGIDLWFTEWG--ANKIGRLTSN-NII-EEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLIKDNME 299 (299)
T ss_dssp CSTTCEEEEETT--TTEEEEEETT-TEE-EEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC-----
T ss_pred CCCCCEEEeccC--CceEEEECCC-Cce-EEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcCcccCC
Confidence 36787776533 4556666543 321 12222211111233445 6778888766789999999987654
No 29
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=94.61 E-value=2.3 Score=37.78 Aligned_cols=66 Identities=8% Similarity=0.235 Sum_probs=43.8
Q ss_pred CCeEEEEEEcCCCCEEEEEEEcC--CeEEEEEEECCCCCcccceEEeeC---CeEEEEEe-CCEEEEEeCCCCc
Q 039590 265 NHSLCVLLSHNIENYYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKK---GAFFVVST-SGHLLLYDPNTQE 332 (379)
Q Consensus 265 ~G~L~l~~~~~~~~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~---~~il~~~~-~~~l~~yd~~t~~ 332 (379)
+|.+.+++.. +..+.||-+.. ..|.....+........-+.+..+ +.+++... ++.+.+||++++.
T Consensus 171 ~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 171 ESRKFVTGGA--DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp TTCEEEEEET--TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred CCCEEEEEeC--CCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 4777776666 67899999876 567776666543332233445555 56655544 7789999998863
No 30
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=93.49 E-value=3.5 Score=35.80 Aligned_cols=195 Identities=12% Similarity=0.097 Sum_probs=99.6
Q ss_pred ecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEE
Q 039590 107 FDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVA 186 (379)
Q Consensus 107 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~ 186 (379)
.+|-|.+.+....+++.+||.|++...+..+. ...++..++..+ + ++.. . ..+.
T Consensus 23 ~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~-----------~~~~i~~~~dG~-l-~v~~-----~--------~~l~ 76 (297)
T 3g4e_A 23 VSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDA-----------PVSSVALRQSGG-Y-VATI-----G--------TKFC 76 (297)
T ss_dssp TTTEEEEEETTTTEEEEEETTTCCEEEEECSS-----------CEEEEEEBTTSS-E-EEEE-----T--------TEEE
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEEEeCCC-----------ceEEEEECCCCC-E-EEEE-----C--------CeEE
Confidence 34556666555557999999998765443221 134566676544 2 2221 1 1244
Q ss_pred EEEcCCCcccccccccCCcceeeeccccEEE--CceEeeEeecCC-------CCccEEEEEECCCceEEE---ecCCCCC
Q 039590 187 MYNLRTNSWRDLKSFKSDHYVMSFWSGSLYV--DGVCYWLSRFRN-------NDHAVILSFHLGNDVFEE---VQEPYIP 254 (379)
Q Consensus 187 vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~-------~~~~~i~~fD~~~e~~~~---i~~P~~~ 254 (379)
+|+..++.++.+....... +.. ....+.+ +|.+|+-..... .....|..+|.....-.. +..|.
T Consensus 77 ~~d~~~g~~~~~~~~~~~~-~~~-~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pn-- 152 (297)
T 3g4e_A 77 ALNWKEQSAVVLATVDNDK-KNN-RFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISN-- 152 (297)
T ss_dssp EEETTTTEEEEEEECCTTC-SSE-EEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEE--
T ss_pred EEECCCCcEEEEEecCCCC-CCC-CCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeecccccc--
Confidence 8888888877655211111 111 1122322 688665443211 123578888876432221 11121
Q ss_pred CCCCcEEEE-ECCe-EEEEEEcCCCCEEEEEEEc-C-CeEEEE---EEECCCCCcccceEEeeCCeEEEEEe-CCEEEEE
Q 039590 255 QSEPTIIGV-YNHS-LCVLLSHNIENYYDIWVMK-D-KCWIKQ---LSVGPFVGVQRPLGFWKKGAFFVVST-SGHLLLY 326 (379)
Q Consensus 255 ~~~~~~l~~-~~G~-L~l~~~~~~~~~i~iW~l~-~-~~W~~~---~~i~~~~~~~~~~~~~~~~~il~~~~-~~~l~~y 326 (379)
.++. -+|+ |++.... ...+.+|-++ + ...... ..+........-+.+..+|.+++... .+.+..|
T Consensus 153 -----gi~~spdg~~lyv~~~~--~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~ 225 (297)
T 3g4e_A 153 -----GLDWSLDHKIFYYIDSL--SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRL 225 (297)
T ss_dssp -----EEEECTTSCEEEEEEGG--GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEE
T ss_pred -----ceEEcCCCCEEEEecCC--CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEE
Confidence 2332 2454 5555544 5567667664 2 332211 12221112223345556778877765 5689999
Q ss_pred eCCCCcE-EEeEE
Q 039590 327 DPNTQEM-RDLGV 338 (379)
Q Consensus 327 d~~t~~~-~~v~~ 338 (379)
|++++++ ..+..
T Consensus 226 d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 226 DPVTGKRLQTVKL 238 (297)
T ss_dssp CTTTCCEEEEEEC
T ss_pred cCCCceEEEEEEC
Confidence 9997664 45554
No 31
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=92.54 E-value=4.5 Score=34.54 Aligned_cols=202 Identities=10% Similarity=0.062 Sum_probs=101.2
Q ss_pred eecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEE
Q 039590 106 PFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHV 185 (379)
Q Consensus 106 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~ 185 (379)
+.+|-+.+.+.....+.++|+..+....++........ .....++.+++..+..-|.. ... ...+
T Consensus 38 ~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~----~~~p~~i~~~~~~g~l~v~~---~~~--------~~~i 102 (286)
T 1q7f_A 38 NAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQ----LLYPNRVAVVRNSGDIIVTE---RSP--------THQI 102 (286)
T ss_dssp CTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTC----BSSEEEEEEETTTTEEEEEE---CGG--------GCEE
T ss_pred CCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCccc----ccCceEEEEEcCCCeEEEEc---CCC--------CCEE
Confidence 34566666544444689999886655555432211100 01235666643333322211 000 1234
Q ss_pred EEEEcCCCcccccccccCCcceeeeccccEEE--CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEEE
Q 039590 186 AMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYV--DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGV 263 (379)
Q Consensus 186 ~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~ 263 (379)
.+|+.....-+.+.. .....+ .++.+ +|.+|..... ...|..||...+....+..+... .....++.
T Consensus 103 ~~~d~~g~~~~~~~~-~~~~~~-----~~i~~~~~g~l~v~~~~----~~~i~~~~~~g~~~~~~~~~~~~-~~p~~i~~ 171 (286)
T 1q7f_A 103 QIYNQYGQFVRKFGA-TILQHP-----RGVTVDNKGRIIVVECK----VMRVIIFDQNGNVLHKFGCSKHL-EFPNGVVV 171 (286)
T ss_dssp EEECTTSCEEEEECT-TTCSCE-----EEEEECTTSCEEEEETT----TTEEEEECTTSCEEEEEECTTTC-SSEEEEEE
T ss_pred EEECCCCcEEEEecC-ccCCCc-----eEEEEeCCCCEEEEECC----CCEEEEEcCCCCEEEEeCCCCcc-CCcEEEEE
Confidence 477744332222220 000011 12222 6877665433 25899999877666665543221 11224553
Q ss_pred -ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccc--eEEeeCCeEEEEEe-CC-EEEEEeCCCCcEEEeEE
Q 039590 264 -YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRP--LGFWKKGAFFVVST-SG-HLLLYDPNTQEMRDLGV 338 (379)
Q Consensus 264 -~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~--~~~~~~~~il~~~~-~~-~l~~yd~~t~~~~~v~~ 338 (379)
.+|.|++.... ...+.+|-.+. .. +..+.....+..| +++..+|.+++... ++ .+..||.+.+.++.+..
T Consensus 172 ~~~g~l~v~~~~--~~~i~~~~~~g-~~--~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~ 246 (286)
T 1q7f_A 172 NDKQEIFISDNR--AHCVKVFNYEG-QY--LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALES 246 (286)
T ss_dssp CSSSEEEEEEGG--GTEEEEEETTC-CE--EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEE
T ss_pred CCCCCEEEEECC--CCEEEEEcCCC-CE--EEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcc
Confidence 36887776654 56777776543 21 2233322112334 45556678877765 43 89999988776666654
No 32
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=92.46 E-value=4.5 Score=40.57 Aligned_cols=66 Identities=8% Similarity=0.235 Sum_probs=43.2
Q ss_pred CCeEEEEEEcCCCCEEEEEEEcC--CeEEEEEEECCCCCcccceEEeeC---CeEEEEEe-CCEEEEEeCCCCc
Q 039590 265 NHSLCVLLSHNIENYYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKK---GAFFVVST-SGHLLLYDPNTQE 332 (379)
Q Consensus 265 ~G~L~l~~~~~~~~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~---~~il~~~~-~~~l~~yd~~t~~ 332 (379)
+|.+.+++.. +..+.+|-+.. ..+.....+.....-..-+.+..+ +.+++... ++.+.+||+++++
T Consensus 169 d~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 169 ESRKFVTGGA--DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp GGCCEEEEET--TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred CCCEEEEEEC--CCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 4666666665 67899999886 566666666543322233445555 66665544 7789999998863
No 33
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=92.27 E-value=4.9 Score=34.31 Aligned_cols=189 Identities=12% Similarity=0.163 Sum_probs=94.6
Q ss_pred ecceEEEecCC-CCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEE
Q 039590 107 FDGIFCIHGPT-NDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHV 185 (379)
Q Consensus 107 ~~GLl~~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~ 185 (379)
.+|.+.+.+.. ...+.++|+..+....+..... ....++.+|+..+ ++.. . .. ...+
T Consensus 87 ~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~---------~~~~~i~~~~~g~---l~v~-~-~~--------~~~i 144 (286)
T 1q7f_A 87 NSGDIIVTERSPTHQIQIYNQYGQFVRKFGATIL---------QHPRGVTVDNKGR---IIVV-E-CK--------VMRV 144 (286)
T ss_dssp TTTEEEEEECGGGCEEEEECTTSCEEEEECTTTC---------SCEEEEEECTTSC---EEEE-E-TT--------TTEE
T ss_pred CCCeEEEEcCCCCCEEEEECCCCcEEEEecCccC---------CCceEEEEeCCCC---EEEE-E-CC--------CCEE
Confidence 46666666432 3468899965444433432211 1135666776432 2221 1 00 1133
Q ss_pred EEEEcCCCcccccccccCCcceeeeccccEEE--CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEEE
Q 039590 186 AMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYV--DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGV 263 (379)
Q Consensus 186 ~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~ 263 (379)
.+|+..+..-+.... +... . ...++.+ +|.+|...... ..|..||...+....+..+... .....++.
T Consensus 145 ~~~~~~g~~~~~~~~-~~~~---~-~p~~i~~~~~g~l~v~~~~~----~~i~~~~~~g~~~~~~~~~g~~-~~p~~i~~ 214 (286)
T 1q7f_A 145 IIFDQNGNVLHKFGC-SKHL---E-FPNGVVVNDKQEIFISDNRA----HCVKVFNYEGQYLRQIGGEGIT-NYPIGVGI 214 (286)
T ss_dssp EEECTTSCEEEEEEC-TTTC---S-SEEEEEECSSSEEEEEEGGG----TEEEEEETTCCEEEEESCTTTS-CSEEEEEE
T ss_pred EEEcCCCCEEEEeCC-CCcc---C-CcEEEEECCCCCEEEEECCC----CEEEEEcCCCCEEEEEccCCcc-CCCcEEEE
Confidence 377755443333220 0000 0 1123333 57877655432 5899999977665555443211 12224554
Q ss_pred -ECCeEEEEEEcCCCC-EEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEEEEeCCEEEEEeCCC
Q 039590 264 -YNHSLCVLLSHNIEN-YYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNT 330 (379)
Q Consensus 264 -~~G~L~l~~~~~~~~-~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t 330 (379)
.+|.|++.... .. .+.+|-.+ ..-..............-+.+..+|.+++...++.+.+|+...
T Consensus 215 d~~G~l~v~~~~--~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 215 NSNGEILIADNH--NNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp CTTCCEEEEECS--SSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred CCCCCEEEEeCC--CCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence 46888877654 43 78888643 2222222222111112235556678888876677899998754
No 34
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=91.70 E-value=7.7 Score=35.39 Aligned_cols=195 Identities=9% Similarity=0.079 Sum_probs=91.9
Q ss_pred eecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEE
Q 039590 106 PFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHV 185 (379)
Q Consensus 106 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~ 185 (379)
|.+++|....+ +.++|||..|++...+-...... .....+.+.+. +.|-+++- .+ ..+
T Consensus 114 S~~n~lAvgld--~tV~lWd~~tg~~~~~~~~~~~~-------~~V~sv~fspd-g~~lasgs----~D--------g~v 171 (420)
T 4gga_A 114 SSGNVLAVALD--NSVYLWSASSGDILQLLQMEQPG-------EYISSVAWIKE-GNYLAVGT----SS--------AEV 171 (420)
T ss_dssp CTTSEEEEEET--TEEEEEETTTCCEEEEEECCSTT-------CCEEEEEECTT-SSEEEEEE----TT--------SCE
T ss_pred CCCCEEEEEeC--CEEEEEECCCCCEEEEEEecCCC-------CcEEEEEECCC-CCEEEEEE----CC--------CeE
Confidence 45676665542 35999999999876643322111 11345566553 34433321 11 224
Q ss_pred EEEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEE-EE
Q 039590 186 AMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIG-VY 264 (379)
Q Consensus 186 ~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~-~~ 264 (379)
.+++.++++-...- ..+. ....++..+|.+-..+... ..+..+|..........+..... ....+. ..
T Consensus 172 ~iWd~~~~~~~~~~---~~h~---~~v~~~s~~~~~l~sgs~d----~~i~~~d~~~~~~~~~~~~~h~~-~~~~~~~~~ 240 (420)
T 4gga_A 172 QLWDVQQQKRLRNM---TSHS---ARVGSLSWNSYILSSGSRS----GHIHHHDVRVAEHHVATLSGHSQ-EVCGLRWAP 240 (420)
T ss_dssp EEEETTTTEEEEEE---CCCS---SCEEEEEEETTEEEEEETT----SEEEEEETTSSSCEEEEEECCSS-CEEEEEECT
T ss_pred EEEEcCCCcEEEEE---eCCC---CceEEEeeCCCEEEEEeCC----CceeEeeecccceeeEEeccccc-ceeeeeecC
Confidence 48888775321111 0110 0112334455443333332 46777777654443322221111 111222 23
Q ss_pred CCeEEEEEEcCCCCEEEEEEEcC--CeEEEEEEECCCCCcccceEEee-CCeEEEEE---eCCEEEEEeCCCCcEEE
Q 039590 265 NHSLCVLLSHNIENYYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWK-KGAFFVVS---TSGHLLLYDPNTQEMRD 335 (379)
Q Consensus 265 ~G~L~l~~~~~~~~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~-~~~il~~~---~~~~l~~yd~~t~~~~~ 335 (379)
+|...+.... +..+.||-... ..+...........-...+.+.. ++.++... .++.+.+||+++++...
T Consensus 241 ~g~~l~s~~~--D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 241 DGRHLASGGN--DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp TSSEEEEEET--TSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE
T ss_pred CCCeeeeeec--cccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce
Confidence 5666555555 67888998765 22222222221111111122222 23444443 25788999998887554
No 35
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=91.27 E-value=7.3 Score=34.34 Aligned_cols=140 Identities=11% Similarity=0.050 Sum_probs=79.7
Q ss_pred EEEEEcCCCcc-cccccccCCcceeeeccccEEECceEeeEeecCCCCccEEEEEECCCceEE-EecCCCCC--CCCCcE
Q 039590 185 VAMYNLRTNSW-RDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFE-EVQEPYIP--QSEPTI 260 (379)
Q Consensus 185 ~~vyss~~~~W-~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~-~i~~P~~~--~~~~~~ 260 (379)
+.+++..+++- +.++ ....|... .+.-+|.+|...... ..|..+|+.+.+.. .++.+... ......
T Consensus 66 v~viD~~t~~~~~~i~---~~~~p~~i---~~~~~g~lyv~~~~~----~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~ 135 (328)
T 3dsm_A 66 IFAIDINTFKEVGRIT---GFTSPRYI---HFLSDEKAYVTQIWD----YRIFIINPKTYEITGYIECPDMDMESGSTEQ 135 (328)
T ss_dssp EEEEETTTCCEEEEEE---CCSSEEEE---EEEETTEEEEEEBSC----SEEEEEETTTTEEEEEEECTTCCTTTCBCCC
T ss_pred EEEEECcccEEEEEcC---CCCCCcEE---EEeCCCeEEEEECCC----CeEEEEECCCCeEEEEEEcCCccccCCCcce
Confidence 34888887654 2222 11112111 122578888876332 48999999988764 56665421 111224
Q ss_pred EEEECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEEEEeC-----------CEEEEEeCC
Q 039590 261 IGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTS-----------GHLLLYDPN 329 (379)
Q Consensus 261 l~~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~-----------~~l~~yd~~ 329 (379)
++..+|+|++.... ....+.++-++.........+... ..-+.+..+|++++.... ..+..+|++
T Consensus 136 i~~~~~~lyv~~~~-~~~~v~viD~~t~~~~~~i~~g~~---p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~ 211 (328)
T 3dsm_A 136 MVQYGKYVYVNCWS-YQNRILKIDTETDKVVDELTIGIQ---PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE 211 (328)
T ss_dssp EEEETTEEEEEECT-TCCEEEEEETTTTEEEEEEECSSC---BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred EEEECCEEEEEcCC-CCCEEEEEECCCCeEEEEEEcCCC---ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence 55578888887642 145666665554443333333211 233455667888777643 589999999
Q ss_pred CCcEEE-eEE
Q 039590 330 TQEMRD-LGV 338 (379)
Q Consensus 330 t~~~~~-v~~ 338 (379)
++++.+ +.+
T Consensus 212 t~~v~~~~~~ 221 (328)
T 3dsm_A 212 TFTVEKQFKF 221 (328)
T ss_dssp TTEEEEEEEC
T ss_pred CCeEEEEEec
Confidence 998764 443
No 36
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=91.26 E-value=6.2 Score=33.50 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=71.9
Q ss_pred EEECceEeeEeecCCCCccEEEEEECCCceE-EEecCCCCCCCCCcEEEEECCeEEEEEEcCCCCEEEEEEEcCCeEEEE
Q 039590 215 LYVDGVCYWLSRFRNNDHAVILSFHLGNDVF-EEVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQ 293 (379)
Q Consensus 215 v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~-~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~ 293 (379)
.+.+|.||--++.. ....|..+|+.+.+- ..+++|... +...++..+++|+++... ... +|+.+-..-.++
T Consensus 27 ~~~~~~LyestG~~--g~S~v~~vD~~tgkv~~~~~l~~~~--fgeGi~~~~~~ly~ltw~--~~~--v~v~D~~tl~~~ 98 (243)
T 3mbr_X 27 FYLRGHLYESTGET--GRSSVRKVDLETGRILQRAEVPPPY--FGAGIVAWRDRLIQLTWR--NHE--GFVYDLATLTPR 98 (243)
T ss_dssp EEETTEEEEEECCT--TSCEEEEEETTTCCEEEEEECCTTC--CEEEEEEETTEEEEEESS--SSE--EEEEETTTTEEE
T ss_pred EEECCEEEEECCCC--CCceEEEEECCCCCEEEEEeCCCCc--ceeEEEEeCCEEEEEEee--CCE--EEEEECCcCcEE
Confidence 44567777755442 345899999998765 567787654 333567788999998654 444 445544333455
Q ss_pred EEECCCCCcccceEEeeCC-eEEEEEeCCEEEEEeCCCCcEE-EeEE
Q 039590 294 LSVGPFVGVQRPLGFWKKG-AFFVVSTSGHLLLYDPNTQEMR-DLGV 338 (379)
Q Consensus 294 ~~i~~~~~~~~~~~~~~~~-~il~~~~~~~l~~yd~~t~~~~-~v~~ 338 (379)
.+|+... .+.++..++ .+++..++.++..+|++|.+.. .+..
T Consensus 99 ~ti~~~~---~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V 142 (243)
T 3mbr_X 99 ARFRYPG---EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV 142 (243)
T ss_dssp EEEECSS---CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred EEEeCCC---CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence 5565332 344554455 4666666889999999997754 4554
No 37
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=89.89 E-value=10 Score=33.79 Aligned_cols=187 Identities=12% Similarity=0.088 Sum_probs=92.6
Q ss_pred eEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEE
Q 039590 110 IFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYN 189 (379)
Q Consensus 110 Ll~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vys 189 (379)
.+++.+.....+.+||..+++....-... . ...++.+.+..+ + ++... .. ...+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~----~------~~~~~~~s~dg~-~-l~~~~--~~--------d~~i~v~d 60 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVG----S------NPMGAVISPDGT-K-VYVAN--AH--------SNDVSIID 60 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS----S------SEEEEEECTTSS-E-EEEEE--GG--------GTEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecC----C------CcceEEECCCCC-E-EEEEC--CC--------CCeEEEEE
Confidence 45555555557999999998765422111 0 124555555432 2 22211 01 12344888
Q ss_pred cCCCcccccccccCCcceeeeccccEEECce-EeeEeecCCCCccEEEEEECCCceEEE-ecCCCCCCCCCcEEEE-ECC
Q 039590 190 LRTNSWRDLKSFKSDHYVMSFWSGSLYVDGV-CYWLSRFRNNDHAVILSFHLGNDVFEE-VQEPYIPQSEPTIIGV-YNH 266 (379)
Q Consensus 190 s~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~i~~fD~~~e~~~~-i~~P~~~~~~~~~l~~-~~G 266 (379)
..+++-...-. ........ .+.-+|. +|..... ...|..+|+.+.+... +..... ...+.. .+|
T Consensus 61 ~~~~~~~~~~~--~~~~v~~~---~~spdg~~l~~~~~~----~~~v~v~d~~~~~~~~~~~~~~~----~~~~~~s~dg 127 (391)
T 1l0q_A 61 TATNNVIATVP--AGSSPQGV---AVSPDGKQVYVTNMA----SSTLSVIDTTSNTVAGTVKTGKS----PLGLALSPDG 127 (391)
T ss_dssp TTTTEEEEEEE--CSSSEEEE---EECTTSSEEEEEETT----TTEEEEEETTTTEEEEEEECSSS----EEEEEECTTS
T ss_pred CCCCeEEEEEE--CCCCccce---EECCCCCEEEEEECC----CCEEEEEECCCCeEEEEEeCCCC----cceEEECCCC
Confidence 87765432220 01111111 1112454 3333322 2479999998876533 332211 123333 356
Q ss_pred eEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEE-EE-eCCEEEEEeCCCCcEEE
Q 039590 267 SLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFV-VS-TSGHLLLYDPNTQEMRD 335 (379)
Q Consensus 267 ~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~-~~-~~~~l~~yd~~t~~~~~ 335 (379)
+..++... ....+.+|-+............ .. ...+.+..+++.++ .. .++.+.+||+++++...
T Consensus 128 ~~l~~~~~-~~~~v~~~d~~~~~~~~~~~~~--~~-~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 194 (391)
T 1l0q_A 128 KKLYVTNN-GDKTVSVINTVTKAVINTVSVG--RS-PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID 194 (391)
T ss_dssp SEEEEEET-TTTEEEEEETTTTEEEEEEECC--SS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CEEEEEeC-CCCEEEEEECCCCcEEEEEecC--CC-cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE
Confidence 54433333 3678999987764333332222 11 23344555666554 33 36789999999987554
No 38
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=89.18 E-value=9.3 Score=32.29 Aligned_cols=195 Identities=12% Similarity=0.126 Sum_probs=97.0
Q ss_pred ceecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeE
Q 039590 105 GPFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAH 184 (379)
Q Consensus 105 ~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~ 184 (379)
+..+|.|...+.....+.++++.++....+-.... ....++.+|+..+...+.-. . ...
T Consensus 44 d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~---------~~p~~ia~d~~~~~lyv~d~----~--------~~~ 102 (267)
T 1npe_A 44 DCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL---------GSPEGIALDHLGRTIFWTDS----Q--------LDR 102 (267)
T ss_dssp ETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC---------CCEEEEEEETTTTEEEEEET----T--------TTE
T ss_pred ecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC---------CCccEEEEEecCCeEEEEEC----C--------CCE
Confidence 33467777776555678888887765333211110 12367777775443222211 1 113
Q ss_pred EEEEEcCCCcccccccccCCcceeeeccccEEE---CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEE
Q 039590 185 VAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYV---DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTII 261 (379)
Q Consensus 185 ~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l 261 (379)
+.+++..+..-+.+. +... . ...++.+ +|.+||..... ....|..+++....-+.+... .. .....+
T Consensus 103 I~~~~~~g~~~~~~~--~~~~---~-~P~~i~vd~~~g~lyv~~~~~--~~~~I~~~~~dg~~~~~~~~~-~~-~~P~gi 172 (267)
T 1npe_A 103 IEVAKMDGTQRRVLF--DTGL---V-NPRGIVTDPVRGNLYWTDWNR--DNPKIETSHMDGTNRRILAQD-NL-GLPNGL 172 (267)
T ss_dssp EEEEETTSCSCEEEE--CSSC---S-SEEEEEEETTTTEEEEEECCS--SSCEEEEEETTSCCCEEEECT-TC-SCEEEE
T ss_pred EEEEEcCCCCEEEEE--ECCC---C-CccEEEEeeCCCEEEEEECCC--CCcEEEEEecCCCCcEEEEEC-CC-CCCcEE
Confidence 337776544322221 0110 0 1123333 68999987541 124788999876544433211 11 122245
Q ss_pred EEE--CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEee-CCeEEEEEe-CCEEEEEeCCCCcEE-Ee
Q 039590 262 GVY--NHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWK-KGAFFVVST-SGHLLLYDPNTQEMR-DL 336 (379)
Q Consensus 262 ~~~--~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~-~~~il~~~~-~~~l~~yd~~t~~~~-~v 336 (379)
+.. ++.|++.... ...+.+.-++. . .....+. ....|.++.. ++.+++... .+.+..+|+++++.. .+
T Consensus 173 a~d~~~~~lyv~d~~--~~~I~~~~~~g-~-~~~~~~~---~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 173 TFDAFSSQLCWVDAG--THRAECLNPAQ-P-GRRKVLE---GLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTF 245 (267)
T ss_dssp EEETTTTEEEEEETT--TTEEEEEETTE-E-EEEEEEE---CCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEcCCCCEEEEEECC--CCEEEEEecCC-C-ceEEEec---CCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEE
Confidence 543 4678877655 44444443332 1 1111122 2234555443 445666553 579999999987644 44
Q ss_pred E
Q 039590 337 G 337 (379)
Q Consensus 337 ~ 337 (379)
.
T Consensus 246 ~ 246 (267)
T 1npe_A 246 H 246 (267)
T ss_dssp C
T ss_pred c
Confidence 4
No 39
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=89.15 E-value=12 Score=33.38 Aligned_cols=184 Identities=8% Similarity=0.033 Sum_probs=90.7
Q ss_pred CeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCccccc
Q 039590 119 DRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDL 198 (379)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 198 (379)
..+.|||..+++....-.... +. .....+.+.+..+.+-+.+- . ...+.+++..++..+..
T Consensus 96 g~i~iwd~~~~~~~~~~~~~~--h~-----~~v~~~~~~~~~~~~l~s~~----~--------d~~i~iwd~~~~~~~~~ 156 (383)
T 3ei3_B 96 GDIILWDYDVQNKTSFIQGMG--PG-----DAITGMKFNQFNTNQLFVSS----I--------RGATTLRDFSGSVIQVF 156 (383)
T ss_dssp SCEEEEETTSTTCEEEECCCS--TT-----CBEEEEEEETTEEEEEEEEE----T--------TTEEEEEETTSCEEEEE
T ss_pred CeEEEEeCCCcccceeeecCC--cC-----CceeEEEeCCCCCCEEEEEe----C--------CCEEEEEECCCCceEEE
Confidence 359999999887654332211 11 12455666553223322221 1 12344888887655544
Q ss_pred ccccCCcceeeeccccEEECceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEEE-ECCe-EEEEEEcCC
Q 039590 199 KSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGV-YNHS-LCVLLSHNI 276 (379)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~-~~G~-L~l~~~~~~ 276 (379)
.... .. ......-...-+|.....+... ..|..+|+..+....+...... -..+.. -+|. +.+.+..
T Consensus 157 ~~~~-~~-~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~h~~~---v~~~~~~~~~~~~l~s~~~-- 225 (383)
T 3ei3_B 157 AKTD-SW-DYWYCCVDVSVSRQMLATGDST----GRLLLLGLDGHEIFKEKLHKAK---VTHAEFNPRCDWLMATSSV-- 225 (383)
T ss_dssp ECCC-CS-SCCEEEEEEETTTTEEEEEETT----SEEEEEETTSCEEEEEECSSSC---EEEEEECSSCTTEEEEEET--
T ss_pred eccC-CC-CCCeEEEEECCCCCEEEEECCC----CCEEEEECCCCEEEEeccCCCc---EEEEEECCCCCCEEEEEeC--
Confidence 3110 00 0000111111244433333332 4888899876655555433221 113332 3455 6666655
Q ss_pred CCEEEEEEEcC--CeEEEEEEECCCCCcccceEEee-CCeEEEEE-eCCEEEEEeCCCCcE
Q 039590 277 ENYYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWK-KGAFFVVS-TSGHLLLYDPNTQEM 333 (379)
Q Consensus 277 ~~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~-~~~il~~~-~~~~l~~yd~~t~~~ 333 (379)
+..+.||-+.. ..-.....+... .-..-+.+.. ++..++.. .++.+.+||+++++.
T Consensus 226 d~~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 226 DATVKLWDLRNIKDKNSYIAEMPHE-KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp TSEEEEEEGGGCCSTTCEEEEEECS-SCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred CCEEEEEeCCCCCcccceEEEecCC-CceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 67899999886 111222333321 2123344555 66665554 478999999987654
No 40
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=88.72 E-value=11 Score=32.48 Aligned_cols=93 Identities=10% Similarity=0.008 Sum_probs=53.0
Q ss_pred cEEEEEECCCceEE-EecCCCCCCCCCcEEEE-ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEee
Q 039590 233 AVILSFHLGNDVFE-EVQEPYIPQSEPTIIGV-YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWK 310 (379)
Q Consensus 233 ~~i~~fD~~~e~~~-~i~~P~~~~~~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~ 310 (379)
..|..+|+.+.+-. .+..+... ..+.. .+|.+.++... ...+.+|-+.... ...+.....-..-+.+..
T Consensus 205 g~i~~~d~~~~~~~~~~~~~~~v----~~~~~s~~~~~l~~~~~--~~~i~~~~~~~~~---~~~~~~~~~~v~~~~~~~ 275 (337)
T 1gxr_A 205 NTVRSWDLREGRQLQQHDFTSQI----FSLGYCPTGEWLAVGME--SSNVEVLHVNKPD---KYQLHLHESCVLSLKFAY 275 (337)
T ss_dssp SEEEEEETTTTEEEEEEECSSCE----EEEEECTTSSEEEEEET--TSCEEEEETTSSC---EEEECCCSSCEEEEEECT
T ss_pred CcEEEEECCCCceEeeecCCCce----EEEEECCCCCEEEEEcC--CCcEEEEECCCCC---eEEEcCCccceeEEEECC
Confidence 47889998876543 23322111 13332 35666666655 6678999887621 122222222223344555
Q ss_pred CCeEEEEE-eCCEEEEEeCCCCcEE
Q 039590 311 KGAFFVVS-TSGHLLLYDPNTQEMR 334 (379)
Q Consensus 311 ~~~il~~~-~~~~l~~yd~~t~~~~ 334 (379)
++.+++.. .++.+.+||+++++..
T Consensus 276 ~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 276 CGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CCCEEEEecCCCcEEEEECCCCeEE
Confidence 66655554 4789999999988765
No 41
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=88.45 E-value=11 Score=32.30 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=70.0
Q ss_pred EEECceEeeEeecCCCCccEEEEEECCCceE-EEecCCCCCCCCCcEEEEECCeEEEEEEcCCCCEEEEEEEcCCeEEEE
Q 039590 215 LYVDGVCYWLSRFRNNDHAVILSFHLGNDVF-EEVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQ 293 (379)
Q Consensus 215 v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~-~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~ 293 (379)
.+.+|.||--++.. ....|..+|+.+.+- ..+++|... +.-.+...+++|+++... ... +|+.+-.+-..+
T Consensus 49 ~~~~~~LyestG~~--g~S~v~~vD~~Tgkv~~~~~l~~~~--FgeGit~~g~~ly~ltw~--~~~--v~v~D~~t~~~~ 120 (262)
T 3nol_A 49 FYRNGYFYESTGLN--GRSSIRKVDIESGKTLQQIELGKRY--FGEGISDWKDKIVGLTWK--NGL--GFVWNIRNLRQV 120 (262)
T ss_dssp EEETTEEEEEEEET--TEEEEEEECTTTCCEEEEEECCTTC--CEEEEEEETTEEEEEESS--SSE--EEEEETTTCCEE
T ss_pred EEECCEEEEECCCC--CCceEEEEECCCCcEEEEEecCCcc--ceeEEEEeCCEEEEEEee--CCE--EEEEECccCcEE
Confidence 34578888766553 245899999998765 557776543 323577788899888654 444 444444333445
Q ss_pred EEECCCCCcccceEEeeCCe-EEEEEeCCEEEEEeCCCCcEE-EeEE
Q 039590 294 LSVGPFVGVQRPLGFWKKGA-FFVVSTSGHLLLYDPNTQEMR-DLGV 338 (379)
Q Consensus 294 ~~i~~~~~~~~~~~~~~~~~-il~~~~~~~l~~yd~~t~~~~-~v~~ 338 (379)
.+|+... .+.++..+++ +++..++..+..+|++|.+.. .+..
T Consensus 121 ~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 121 RSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp EEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred EEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence 5555322 3334444555 555455778999999987654 4554
No 42
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=88.17 E-value=14 Score=32.90 Aligned_cols=98 Identities=15% Similarity=0.057 Sum_probs=50.4
Q ss_pred cEEEEEECCCceEE-EecCCCCCCCCCcEEEE--ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEe
Q 039590 233 AVILSFHLGNDVFE-EVQEPYIPQSEPTIIGV--YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFW 309 (379)
Q Consensus 233 ~~i~~fD~~~e~~~-~i~~P~~~~~~~~~l~~--~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~ 309 (379)
..|..+|+.+.+-. .+..+... .....+.. .++.+.+.+.. +..+.||-+... ..+..+.....-..-+.+.
T Consensus 192 ~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~l~sg~~--dg~v~~wd~~~~--~~~~~~~~h~~~v~~v~fs 266 (344)
T 4gqb_B 192 NRILLWDTRCPKPASQIGCSAPG-YLPTSLAWHPQQSEVFVFGDE--NGTVSLVDTKST--SCVLSSAVHSQCVTGLVFS 266 (344)
T ss_dssp SCEEEEETTSSSCEEECC----C-CCEEEEEECSSCTTEEEEEET--TSEEEEEESCC----CCEEEECCSSCEEEEEEC
T ss_pred cccccccccccceeeeeecceee-ccceeeeecCCCCcceEEecc--CCcEEEEECCCC--cEEEEEcCCCCCEEEEEEc
Confidence 36788898776532 23222211 11113332 24566666655 678999977651 1222332222212234454
Q ss_pred eCC-eEEEE-EeCCEEEEEeCCCCcEEE
Q 039590 310 KKG-AFFVV-STSGHLLLYDPNTQEMRD 335 (379)
Q Consensus 310 ~~~-~il~~-~~~~~l~~yd~~t~~~~~ 335 (379)
.++ .++.. ..++.+.+||.+++++..
T Consensus 267 p~g~~~lasgs~D~~i~vwd~~~~~~~~ 294 (344)
T 4gqb_B 267 PHSVPFLASLSEDCSLAVLDSSLSELFR 294 (344)
T ss_dssp SSSSCCEEEEETTSCEEEECTTCCEEEE
T ss_pred cCCCeEEEEEeCCCeEEEEECCCCcEEE
Confidence 555 34443 447889999999987654
No 43
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=87.48 E-value=12 Score=31.63 Aligned_cols=194 Identities=9% Similarity=0.073 Sum_probs=96.9
Q ss_pred ccceecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceee
Q 039590 103 LGGPFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEF 182 (379)
Q Consensus 103 ~~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~ 182 (379)
+....+|-+.+.......+.++||. ++...++.+... ....++..|+... .-| . . .. .
T Consensus 25 i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~--------~~~~~i~~~~~g~-l~v--~-~-~~--------~ 82 (300)
T 2qc5_A 25 ITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPD--------AKVMCLIVSSLGD-IWF--T-E-NG--------A 82 (300)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTT--------CCEEEEEECTTSC-EEE--E-E-TT--------T
T ss_pred eeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCC--------CcceeEEECCCCC-EEE--E-e-cC--------C
Confidence 3334456666665444568999998 766654432110 1235666665432 211 1 1 00 1
Q ss_pred eEEEEEEcCCCcccccccccCCcceeeeccccEEE--CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcE
Q 039590 183 AHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYV--DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTI 260 (379)
Q Consensus 183 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~ 260 (379)
..+.+|+.. +.++... .+... ....++.+ +|.+|+..... ..|..+|.. .+...+.+|... .....
T Consensus 83 ~~v~~~d~~-g~~~~~~-~~~~~----~~~~~i~~~~~g~l~v~~~~~----~~i~~~~~~-g~~~~~~~~~~~-~~~~~ 150 (300)
T 2qc5_A 83 NKIGKLSKK-GGFTEYP-LPQPD----SGPYGITEGLNGDIWFTQLNG----DRIGKLTAD-GTIYEYDLPNKG-SYPAF 150 (300)
T ss_dssp TEEEEECTT-SCEEEEE-CSSTT----CCEEEEEECSTTCEEEEETTT----TEEEEECTT-SCEEEEECSSTT-CCEEE
T ss_pred CeEEEECCC-CCeEEec-CCCCC----CCCccceECCCCCEEEEccCC----CeEEEECCC-CCEEEccCCCCC-CCcee
Confidence 123367766 5554333 00000 01122332 58777655322 489999998 666666665322 12224
Q ss_pred EEE-ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccc--eEEeeCCeEEEEEe-CCEEEEEeCCCCcEEEe
Q 039590 261 IGV-YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRP--LGFWKKGAFFVVST-SGHLLLYDPNTQEMRDL 336 (379)
Q Consensus 261 l~~-~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~--~~~~~~~~il~~~~-~~~l~~yd~~t~~~~~v 336 (379)
++. .+|.|++.... ...+..+-. +..... ...+ .....| +.+..+|.+++... .+.+..||+ ++++..+
T Consensus 151 i~~d~~g~l~v~~~~--~~~i~~~~~-~g~~~~-~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 151 ITLGSDNALWFTENQ--NNSIGRITN-TGKLEE-YPLP--TNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY 223 (300)
T ss_dssp EEECTTSSEEEEETT--TTEEEEECT-TCCEEE-EECS--STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE
T ss_pred EEECCCCCEEEEecC--CCeEEEECC-CCcEEE-eeCC--CCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE
Confidence 544 46787766543 334433322 233332 2221 122334 33444677877764 468999999 6666655
Q ss_pred E
Q 039590 337 G 337 (379)
Q Consensus 337 ~ 337 (379)
.
T Consensus 224 ~ 224 (300)
T 2qc5_A 224 D 224 (300)
T ss_dssp E
T ss_pred E
Confidence 3
No 44
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=87.44 E-value=15 Score=32.46 Aligned_cols=94 Identities=9% Similarity=0.116 Sum_probs=51.7
Q ss_pred cEEEEEECCCce-EEEecCCCCCCCCCcEEE-EECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEee
Q 039590 233 AVILSFHLGNDV-FEEVQEPYIPQSEPTIIG-VYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWK 310 (379)
Q Consensus 233 ~~i~~fD~~~e~-~~~i~~P~~~~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~ 310 (379)
..|..+|+.++. ...+.........-..+. .-+|.+.+.+.. +..+.+|-+....|.....+........-+.+..
T Consensus 127 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~--d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp 204 (345)
T 3fm0_A 127 KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASY--DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP 204 (345)
T ss_dssp SCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEET--TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT
T ss_pred CeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeC--CCcEEEEEecCCCEEEEEEecCCCCceEEEEECC
Confidence 367777876542 332221111111111333 235666666655 6789999988777877666654333233345555
Q ss_pred CCeEEEEE-eCCEEEEEeC
Q 039590 311 KGAFFVVS-TSGHLLLYDP 328 (379)
Q Consensus 311 ~~~il~~~-~~~~l~~yd~ 328 (379)
+|..++.. .++.+.+||.
T Consensus 205 ~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 205 SGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp TSSEEEEEETTSCEEEEEE
T ss_pred CCCEEEEEeCCCeEEEecc
Confidence 66655554 4677888875
No 45
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=87.23 E-value=13 Score=31.52 Aligned_cols=108 Identities=10% Similarity=0.058 Sum_probs=61.3
Q ss_pred CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEEE-ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEE
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGV-YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSV 296 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i 296 (379)
+|.+|..... ...|..+|. +.++..+..|... .....++. .+|.|++.... ...+.+|-. +..... ...
T Consensus 151 ~g~l~v~~~~----~~~i~~~~~-~g~~~~~~~~~~~-~~~~~i~~~~~g~l~v~~~~--~~~i~~~~~-~g~~~~-~~~ 220 (299)
T 2z2n_A 151 DNALWFTENQ----NNAIGRITE-SGDITEFKIPTPA-SGPVGITKGNDDALWFVEII--GNKIGRITT-SGEITE-FKI 220 (299)
T ss_dssp TSCEEEEETT----TTEEEEECT-TCCEEEEECSSTT-CCEEEEEECTTSSEEEEETT--TTEEEEECT-TCCEEE-EEC
T ss_pred CCCEEEEeCC----CCEEEEEcC-CCcEEEeeCCCCC-CcceeEEECCCCCEEEEccC--CceEEEECC-CCcEEE-EEC
Confidence 5777765433 248999999 7777776565432 11224444 35788766543 455555544 333222 222
Q ss_pred CCCCCcccc--eEEeeCCeEEEEE-eCCEEEEEeCCCCcEEEeEE
Q 039590 297 GPFVGVQRP--LGFWKKGAFFVVS-TSGHLLLYDPNTQEMRDLGV 338 (379)
Q Consensus 297 ~~~~~~~~~--~~~~~~~~il~~~-~~~~l~~yd~~t~~~~~v~~ 338 (379)
+ .....| +.+..+|.+++.. ..+.+..||+ +++++.+.+
T Consensus 221 ~--~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~ 262 (299)
T 2z2n_A 221 P--TPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPI 262 (299)
T ss_dssp S--STTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEEC
T ss_pred C--CCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeC
Confidence 2 122234 4445567777765 3679999999 566665543
No 46
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=87.21 E-value=12 Score=31.26 Aligned_cols=193 Identities=13% Similarity=0.160 Sum_probs=92.4
Q ss_pred ccceecceEEE-ecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeeccccccee
Q 039590 103 LGGPFDGIFCI-HGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYE 181 (379)
Q Consensus 103 ~~~s~~GLl~~-~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~ 181 (379)
+..+.+|-+.+ .......+.++|+.++....++...... ..++.+|+..+ +... .. .
T Consensus 29 i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------p~~i~~~~~g~---l~v~-~~--~------- 86 (270)
T 1rwi_B 29 VAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQ---------PQGLAVDGAGT---VYVT-DF--N------- 86 (270)
T ss_dssp EEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCS---------CCCEEECTTCC---EEEE-ET--T-------
T ss_pred eEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCC---------cceeEECCCCC---EEEE-cC--C-------
Confidence 33344566666 5444456899999887766554322111 23455565432 2222 11 1
Q ss_pred eeEEEEEEcCCCcccccccccCCcceeeeccccEEE--CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCc
Q 039590 182 FAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYV--DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPT 259 (379)
Q Consensus 182 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~ 259 (379)
..+.+|+..++.-+.... .....+ .++.+ +|.+|+..... ..|..+|..+......... .. ....
T Consensus 87 -~~i~~~d~~~~~~~~~~~-~~~~~p-----~~i~~~~~g~l~v~~~~~----~~i~~~~~~~~~~~~~~~~-~~-~~p~ 153 (270)
T 1rwi_B 87 -NRVVTLAAGSNNQTVLPF-DGLNYP-----EGLAVDTQGAVYVADRGN----NRVVKLAAGSKTQTVLPFT-GL-NDPD 153 (270)
T ss_dssp -TEEEEECTTCSCCEECCC-CSCSSE-----EEEEECTTCCEEEEEGGG----TEEEEECTTCCSCEECCCC-SC-CSCC
T ss_pred -CEEEEEeCCCceEeeeec-CCcCCC-----cceEECCCCCEEEEECCC----CEEEEEECCCceeEeeccc-cC-CCce
Confidence 123477776654433320 000111 12222 67877765432 4788888776544332211 11 1122
Q ss_pred EEEE-ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccc--eEEeeCCeEEEEEe-CCEEEEEeCCCCcEEE
Q 039590 260 IIGV-YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRP--LGFWKKGAFFVVST-SGHLLLYDPNTQEMRD 335 (379)
Q Consensus 260 ~l~~-~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~--~~~~~~~~il~~~~-~~~l~~yd~~t~~~~~ 335 (379)
.++. .+|.|++.... ...+.+|-.+... .. .. ....+..| +.+..+|.+++... ++.+..||++++....
T Consensus 154 ~i~~~~~g~l~v~~~~--~~~i~~~~~~~~~--~~-~~-~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~ 227 (270)
T 1rwi_B 154 GVAVDNSGNVYVTDTD--NNRVVKLEAESNN--QV-VL-PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV 227 (270)
T ss_dssp CEEECTTCCEEEEEGG--GTEEEEECTTTCC--EE-EC-CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE
T ss_pred eEEEeCCCCEEEEECC--CCEEEEEecCCCc--eE-ee-cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee
Confidence 4444 36887776654 4566666544311 01 11 11122334 44445667777654 5689999998876554
Q ss_pred e
Q 039590 336 L 336 (379)
Q Consensus 336 v 336 (379)
+
T Consensus 228 ~ 228 (270)
T 1rwi_B 228 L 228 (270)
T ss_dssp C
T ss_pred e
Confidence 3
No 47
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=86.17 E-value=16 Score=31.59 Aligned_cols=190 Identities=11% Similarity=0.018 Sum_probs=94.4
Q ss_pred ecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEE
Q 039590 107 FDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVA 186 (379)
Q Consensus 107 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~ 186 (379)
..+.+++.......+.++|+.|++....-.... ... ++.+++..+ + ++.... . ...+.
T Consensus 8 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~---------~~~-~~~~s~dg~-~-l~~~~~--~--------~~~i~ 65 (331)
T 3u4y_A 8 TSNFGIVVEQHLRRISFFSTDTLEILNQITLGY---------DFV-DTAITSDCS-N-VVVTSD--F--------CQTLV 65 (331)
T ss_dssp CCCEEEEEEGGGTEEEEEETTTCCEEEEEECCC---------CEE-EEEECSSSC-E-EEEEES--T--------TCEEE
T ss_pred CCCEEEEEecCCCeEEEEeCcccceeeeEEccC---------Ccc-eEEEcCCCC-E-EEEEeC--C--------CCeEE
Confidence 344555554444579999999998754322211 112 566666543 2 222210 0 11344
Q ss_pred EEEcCCCcc--cccccccCCcceeeecc-ccEEECce-EeeEeecCCCCccEEEEEECCCceEEE-ecCCCCCCCCCcEE
Q 039590 187 MYNLRTNSW--RDLKSFKSDHYVMSFWS-GSLYVDGV-CYWLSRFRNNDHAVILSFHLGNDVFEE-VQEPYIPQSEPTII 261 (379)
Q Consensus 187 vyss~~~~W--~~~~~~~~~~~~~~~~~-~~v~~~G~-lywl~~~~~~~~~~i~~fD~~~e~~~~-i~~P~~~~~~~~~l 261 (379)
+++..++.- +... ....+ .. -.+.-+|. +| ..... .....|..+|+.+.+... ++..... ..+
T Consensus 66 ~~d~~~~~~~~~~~~---~~~~~---~~~~~~s~dg~~l~-~~~~~-~~~~~i~v~d~~~~~~~~~~~~~~~~----~~~ 133 (331)
T 3u4y_A 66 QIETQLEPPKVVAIQ---EGQSS---MADVDITPDDQFAV-TVTGL-NHPFNMQSYSFLKNKFISTIPIPYDA----VGI 133 (331)
T ss_dssp EEECSSSSCEEEEEE---ECSSC---CCCEEECTTSSEEE-ECCCS-SSSCEEEEEETTTTEEEEEEECCTTE----EEE
T ss_pred EEECCCCceeEEecc---cCCCC---ccceEECCCCCEEE-EecCC-CCcccEEEEECCCCCeEEEEECCCCc----cce
Confidence 888877654 1111 00001 11 11222454 44 33221 111289999998776533 3332211 234
Q ss_pred E-EECCe-EEEEEEcCCCCE-EEEEEEcC-CeE-EE-EEEECCCCCcccceEEeeCCe-EEEEEe-CCEEEEEeCCCCcE
Q 039590 262 G-VYNHS-LCVLLSHNIENY-YDIWVMKD-KCW-IK-QLSVGPFVGVQRPLGFWKKGA-FFVVST-SGHLLLYDPNTQEM 333 (379)
Q Consensus 262 ~-~~~G~-L~l~~~~~~~~~-i~iW~l~~-~~W-~~-~~~i~~~~~~~~~~~~~~~~~-il~~~~-~~~l~~yd~~t~~~ 333 (379)
. .-+|+ |++.... ... +.+|.++. ..- .. ...+... .-..-+.+..+|+ +++... ++.+.+||+++++.
T Consensus 134 ~~spdg~~l~~~~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 134 AISPNGNGLILIDRS--SANTVRRFKIDADGVLFDTGQEFISGG-TRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp EECTTSSCEEEEEET--TTTEEEEEEECTTCCEEEEEEEEECSS-SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred EECCCCCEEEEEecC--CCceEEEEEECCCCcEeecCCccccCC-CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 4 33565 5555544 345 99999886 221 11 1222211 1133455666776 444443 67899999998875
No 48
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=85.97 E-value=11 Score=33.58 Aligned_cols=110 Identities=12% Similarity=0.157 Sum_probs=63.3
Q ss_pred cccEEECceEeeEeecCCCCccEEEEEECCCc--eEEEecCCCCCC-----CCC--cEEEEECCeEEEEEEcCCCCEEEE
Q 039590 212 SGSLYVDGVCYWLSRFRNNDHAVILSFHLGND--VFEEVQEPYIPQ-----SEP--TIIGVYNHSLCVLLSHNIENYYDI 282 (379)
Q Consensus 212 ~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e--~~~~i~~P~~~~-----~~~--~~l~~~~G~L~l~~~~~~~~~i~i 282 (379)
..++..+|.+|.....+ .|.+||..+. .|+. .++.... ... ..++..+|.|++... ...+..
T Consensus 47 ~~p~v~~~~v~~~~~~g-----~v~a~d~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---~g~l~a 117 (376)
T 3q7m_A 47 LHPALADNVVYAADRAG-----LVKALNADDGKEIWSV-SLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE---KAQVYA 117 (376)
T ss_dssp CCCEEETTEEEEECTTS-----EEEEEETTTCCEEEEE-ECCC---CCSCCCCCEEEEEEEETTEEEEEET---TSEEEE
T ss_pred eccEEECCEEEEEcCCC-----eEEEEEccCCceeeee-cCccccccccccCcccccCceEeCCEEEEEcC---CCEEEE
Confidence 45788899999876554 8999998654 4543 3322110 111 245567777776543 234444
Q ss_pred EEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEEEeCCEEEEEeCCCCcEEE
Q 039590 283 WVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRD 335 (379)
Q Consensus 283 W~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~~ 335 (379)
+-.+. ..|... .+. .....|. ..++.+++...++.++++|.++++...
T Consensus 118 ~d~~tG~~~W~~~--~~~-~~~~~p~--~~~~~v~v~~~~g~l~~~d~~tG~~~W 167 (376)
T 3q7m_A 118 LNTSDGTVAWQTK--VAG-EALSRPV--VSDGLVLIHTSNGQLQALNEADGAVKW 167 (376)
T ss_dssp EETTTCCEEEEEE--CSS-CCCSCCE--EETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EECCCCCEEEEEe--CCC-ceEcCCE--EECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 43333 467542 221 1112232 235667776668899999999988554
No 49
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=85.66 E-value=16 Score=31.19 Aligned_cols=195 Identities=8% Similarity=0.064 Sum_probs=100.2
Q ss_pred EEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEc
Q 039590 111 FCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNL 190 (379)
Q Consensus 111 l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss 190 (379)
++..+.....++.+||.++ ...+..+. ....++.+++... ++.. . .. ...+.+|+.
T Consensus 42 l~~~~~~~~~i~~~~~~~~-~~~~~~~~----------~~~~~l~~~~dg~---l~v~-~-~~--------~~~i~~~d~ 97 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDGQ-LSPEMHPS----------HHQNGHCLNKQGH---LIAC-S-HG--------LRRLERQRE 97 (296)
T ss_dssp EEEEEGGGTEEEEEETTSC-EEEEESSC----------SSEEEEEECTTCC---EEEE-E-TT--------TTEEEEECS
T ss_pred EEEEeCCCCEEEEEECCCC-eEEEECCC----------CCcceeeECCCCc---EEEE-e-cC--------CCeEEEEcC
Confidence 4444333346999999998 55443321 1135677776433 2221 1 01 112448888
Q ss_pred CCCcccccccccCCcceeeeccccEE--ECceEeeEeec-C------------CCCccEEEEEECCCceEEEecCCCCCC
Q 039590 191 RTNSWRDLKSFKSDHYVMSFWSGSLY--VDGVCYWLSRF-R------------NNDHAVILSFHLGNDVFEEVQEPYIPQ 255 (379)
Q Consensus 191 ~~~~W~~~~~~~~~~~~~~~~~~~v~--~~G~lywl~~~-~------------~~~~~~i~~fD~~~e~~~~i~~P~~~~ 255 (379)
.+++.+........ .+.. ....+. -+|.+|..... + ......|..+|.. .+...+.-...
T Consensus 98 ~~g~~~~~~~~~~~-~~~~-~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~-- 172 (296)
T 3e5z_A 98 PGGEWESIADSFEG-KKLN-SPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRV-- 172 (296)
T ss_dssp TTCCEEEEECEETT-EECC-CCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCS--
T ss_pred CCCcEEEEeeccCC-CCCC-CCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCC--
Confidence 77776654310000 0110 112233 36877664210 0 0112479999987 55544422111
Q ss_pred CCCcEEEE-ECCeEEEEEEcCCCCEEEEEEEcC-CeE-EEEEEECCCCCcccceEEeeCCeEEEEEeCCEEEEEeCCCCc
Q 039590 256 SEPTIIGV-YNHSLCVLLSHNIENYYDIWVMKD-KCW-IKQLSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQE 332 (379)
Q Consensus 256 ~~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~-~~W-~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~ 332 (379)
....++. -+|++. +... ....+.+|-++. ... .....+........-+.+..+|.+++.. ++.+..||++.+.
T Consensus 173 -~~~gi~~s~dg~~l-v~~~-~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~g~~ 248 (296)
T 3e5z_A 173 -KPNGLAFLPSGNLL-VSDT-GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPDGDE 248 (296)
T ss_dssp -SEEEEEECTTSCEE-EEET-TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTTSCE
T ss_pred -CCccEEECCCCCEE-EEeC-CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCCCCE
Confidence 1113443 367665 4333 356788888863 444 2222232222223446666778887776 8899999998776
Q ss_pred EEEeEE
Q 039590 333 MRDLGV 338 (379)
Q Consensus 333 ~~~v~~ 338 (379)
++.+..
T Consensus 249 ~~~~~~ 254 (296)
T 3e5z_A 249 LGRVLT 254 (296)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 666654
No 50
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=85.53 E-value=33 Score=34.64 Aligned_cols=132 Identities=11% Similarity=-0.008 Sum_probs=69.4
Q ss_pred EEEEcCCCcccccccccCCcceeeeccccEEE---CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEE
Q 039590 186 AMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYV---DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIG 262 (379)
Q Consensus 186 ~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~ 262 (379)
.++++.+..-+.+.. ..+ . ...++.+ +|.|||..... ...|..+++....-..+-. ... .+...|+
T Consensus 496 ~v~~ldG~~~~~l~~--~~l-~---~P~gIaVDp~~g~LYwtD~g~---~~~I~~~~~dG~~~~~lv~-~~l-~~P~GLa 564 (791)
T 3m0c_C 496 SVADTKGVKRKTLFR--ENG-S---KPRAIVVDPVHGFMYWTDWGT---PAKIKKGGLNGVDIYSLVT-ENI-QWPNGIT 564 (791)
T ss_dssp EEEETTSSSEEEEEE--CTT-C---CEEEEEEETTTTEEEEEECSS---SCEEEEEETTSCCEEEEEC-SSC-SCEEEEE
T ss_pred EEEeCCCCeEEEEEe--CCC-C---CcceEEEecCCCCEEEecCCC---CCeEEEEecCCCceEEEEe-CCC-CCceEEE
Confidence 377776655444431 011 0 1234555 58999987442 2479999997655443321 111 1223555
Q ss_pred EE--CCeEEEEEEcCCCCEEEEEEEcC-CeEEEEEEECCCCCcccceEEeeCC-eEEEEEe-CCEEEEEeCCCCcE
Q 039590 263 VY--NHSLCVLLSHNIENYYDIWVMKD-KCWIKQLSVGPFVGVQRPLGFWKKG-AFFVVST-SGHLLLYDPNTQEM 333 (379)
Q Consensus 263 ~~--~G~L~l~~~~~~~~~i~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~-~il~~~~-~~~l~~yd~~t~~~ 333 (379)
.- +|+|+++... ...|..--++. ...+. +.....+..|+++...+ .||+... ...+...|..+++-
T Consensus 565 vD~~~~~LYwaD~~--~~~I~~~d~dG~~~~~v---~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 565 LDLLSGRLYWVDSK--LHSISSIDVNGGNRKTI---LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSD 635 (791)
T ss_dssp EETTTTEEEEEETT--TTEEEEEETTSCSCEEE---EECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCC
T ss_pred EecCCCeEEEEeCC--CCcEEEEecCCCceEEE---ecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcc
Confidence 44 7889988754 34444333332 22111 11112345677665444 4555543 56888888777653
No 51
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=85.39 E-value=17 Score=31.24 Aligned_cols=110 Identities=10% Similarity=0.055 Sum_probs=67.5
Q ss_pred ceEeeEeecCCCCccEEEEEECCCceE-EEecCCCCCCCCCcEEEEECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEEC
Q 039590 219 GVCYWLSRFRNNDHAVILSFHLGNDVF-EEVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVG 297 (379)
Q Consensus 219 G~lywl~~~~~~~~~~i~~fD~~~e~~-~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~ 297 (379)
|.||..++.. ....|..+|+.+.+- ..+++|... +...++..+++|++.... ... +++.+-.+-..+.+|+
T Consensus 32 g~Lyvstg~~--~~s~v~~iD~~tg~v~~~i~l~~~~--fgeGi~~~g~~lyv~t~~--~~~--v~viD~~t~~v~~~i~ 103 (266)
T 2iwa_A 32 DTLFESTGLY--GRSSVRQVALQTGKVENIHKMDDSY--FGEGLTLLNEKLYQVVWL--KNI--GFIYDRRTLSNIKNFT 103 (266)
T ss_dssp TEEEEEECST--TTCEEEEEETTTCCEEEEEECCTTC--CEEEEEEETTEEEEEETT--CSE--EEEEETTTTEEEEEEE
T ss_pred CeEEEECCCC--CCCEEEEEECCCCCEEEEEecCCCc--ceEEEEEeCCEEEEEEec--CCE--EEEEECCCCcEEEEEE
Confidence 6777766431 235899999988765 456666532 222455667788887654 444 4445543344555665
Q ss_pred CCCCcccceEEeeCC-eEEEEEeCCEEEEEeCCCCcEE-EeEE
Q 039590 298 PFVGVQRPLGFWKKG-AFFVVSTSGHLLLYDPNTQEMR-DLGV 338 (379)
Q Consensus 298 ~~~~~~~~~~~~~~~-~il~~~~~~~l~~yd~~t~~~~-~v~~ 338 (379)
.. ...+.++..+| .+++...++.+...|++|.+.. .+..
T Consensus 104 ~g--~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~V 144 (266)
T 2iwa_A 104 HQ--MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNV 144 (266)
T ss_dssp CC--SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred CC--CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEE
Confidence 33 12345555455 4666556789999999997744 4664
No 52
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=85.22 E-value=18 Score=31.45 Aligned_cols=63 Identities=10% Similarity=0.144 Sum_probs=36.9
Q ss_pred CeEEEEEEcCCCCEEEEEEEcC-C-eEEEEEEECCC--CCcccceEEeeCCeEEEEE-eCCEEEEEeCCC
Q 039590 266 HSLCVLLSHNIENYYDIWVMKD-K-CWIKQLSVGPF--VGVQRPLGFWKKGAFFVVS-TSGHLLLYDPNT 330 (379)
Q Consensus 266 G~L~l~~~~~~~~~i~iW~l~~-~-~W~~~~~i~~~--~~~~~~~~~~~~~~il~~~-~~~~l~~yd~~t 330 (379)
|.+.+++.. +..+.||-++. . .......+... ..-..-+.+..++.+++.. .++.+.+||+.+
T Consensus 299 ~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 299 QKMLALGNQ--VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp SSEEEEECT--TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CcEEEEEec--CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 676666654 67899999987 2 11233344432 1222334555567766654 477999999864
No 53
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=85.18 E-value=7 Score=34.72 Aligned_cols=193 Identities=9% Similarity=0.035 Sum_probs=83.4
Q ss_pred cceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEE
Q 039590 108 DGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAM 187 (379)
Q Consensus 108 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~v 187 (379)
+|-+++.+.....+.|||..++++..+-...... .....+.+.+.. .+-+.+- .+. . +.+
T Consensus 22 ~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~-------~~v~~~~~s~~~-~~l~s~s----~d~------~--v~v 81 (377)
T 3dwl_C 22 QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHD-------KIVTCVDWAPKS-NRIVTCS----QDR------N--AYV 81 (377)
T ss_dssp SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCS-------SCEEEEEECTTT-CCEEEEE----TTS------S--EEE
T ss_pred CCCEEEEecCCCEEEEEEccCCceEEEEEEecCC-------ceEEEEEEeCCC-CEEEEEe----CCC------e--EEE
Confidence 4444455433346899999988544443332211 123556666543 3322211 111 3 448
Q ss_pred EEcCCCc-ccccccccCCcceeeeccccEEE--CceEeeEeecCCCCccEEEEEECCCce----EEEecCCCCCCCCCcE
Q 039590 188 YNLRTNS-WRDLKSFKSDHYVMSFWSGSLYV--DGVCYWLSRFRNNDHAVILSFHLGNDV----FEEVQEPYIPQSEPTI 260 (379)
Q Consensus 188 yss~~~~-W~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~i~~fD~~~e~----~~~i~~P~~~~~~~~~ 260 (379)
|+..++. |.....+. .+ ... -.++.+ +|.....+... ..|..+|+.+.+ ...+..|... .-..
T Consensus 82 wd~~~~~~~~~~~~~~-~~-~~~--v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~h~~--~v~~ 151 (377)
T 3dwl_C 82 YEKRPDGTWKQTLVLL-RL-NRA--ATFVRWSPNEDKFAVGSGA----RVISVCYFEQENDWWVSKHLKRPLRS--TILS 151 (377)
T ss_dssp C------CCCCEEECC-CC-SSC--EEEEECCTTSSCCEEEESS----SCEEECCC-----CCCCEEECSSCCS--CEEE
T ss_pred EEcCCCCceeeeeEec-cc-CCc--eEEEEECCCCCEEEEEecC----CeEEEEEECCcccceeeeEeecccCC--CeEE
Confidence 8888776 55443110 00 000 011111 34333333222 367777877654 2333332111 1113
Q ss_pred EEE-ECCeEEEEEEcCCCCEEEEEEEcC---------CeE-------EEEEEECCCCCcccceEEeeCCeEEEE-EeCCE
Q 039590 261 IGV-YNHSLCVLLSHNIENYYDIWVMKD---------KCW-------IKQLSVGPFVGVQRPLGFWKKGAFFVV-STSGH 322 (379)
Q Consensus 261 l~~-~~G~L~l~~~~~~~~~i~iW~l~~---------~~W-------~~~~~i~~~~~~~~~~~~~~~~~il~~-~~~~~ 322 (379)
+.. -+|.+.+.+.. +..+.+|-+.. ..| ..+..+. ...-..-+.+..++.+++. ..++.
T Consensus 152 ~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~ 228 (377)
T 3dwl_C 152 LDWHPNNVLLAAGCA--DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYP-SGGWVHAVGFSPSGNALAYAGHDSS 228 (377)
T ss_dssp EEECTTSSEEEEEES--SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCC-CSSSEEEEEECTTSSCEEEEETTTE
T ss_pred EEEcCCCCEEEEEeC--CCEEEEEEEEecccCCCccccccccccchhhhhhccc-CCceEEEEEECCCCCEEEEEeCCCc
Confidence 332 25666666655 67899999852 112 1122221 1111222344456665444 45779
Q ss_pred EEEEeCCCCcE
Q 039590 323 LLLYDPNTQEM 333 (379)
Q Consensus 323 l~~yd~~t~~~ 333 (379)
+.+||+++++.
T Consensus 229 i~iwd~~~~~~ 239 (377)
T 3dwl_C 229 VTIAYPSAPEQ 239 (377)
T ss_dssp EC-CEECSTTS
T ss_pred EEEEECCCCCC
Confidence 99999988764
No 54
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=85.04 E-value=17 Score=31.21 Aligned_cols=110 Identities=8% Similarity=-0.029 Sum_probs=67.0
Q ss_pred EEECceEeeEeecCCCCccEEEEEECCCceE-EEecCCCCCCCCCcEEEEECCeEEEEEEcCCCCEEEEEEEcCCeEEEE
Q 039590 215 LYVDGVCYWLSRFRNNDHAVILSFHLGNDVF-EEVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQ 293 (379)
Q Consensus 215 v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~-~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~ 293 (379)
.+.+|.||.-++.. ..|..+|+.+.+- ..+ +|... +.--+...+++|+++... ... +|+.+-.+-.++
T Consensus 61 ~~~~~~Ly~stG~~----g~v~~iD~~Tgkv~~~~-l~~~~--FgeGit~~g~~Ly~ltw~--~~~--v~V~D~~Tl~~~ 129 (268)
T 3nok_A 61 VFHQGHFFESTGHQ----GTLRQLSLESAQPVWME-RLGNI--FAEGLASDGERLYQLTWT--EGL--LFTWSGMPPQRE 129 (268)
T ss_dssp EEETTEEEEEETTT----TEEEECCSSCSSCSEEE-ECTTC--CEEEEEECSSCEEEEESS--SCE--EEEEETTTTEEE
T ss_pred EEECCEEEEEcCCC----CEEEEEECCCCcEEeEE-CCCCc--ceeEEEEeCCEEEEEEcc--CCE--EEEEECCcCcEE
Confidence 33467777766554 3599999998765 445 66542 222466778889887654 443 455554333455
Q ss_pred EEECCCCCcccceEEeeCC-eEEEEEeCCEEEEEeCCCCcEE-EeEE
Q 039590 294 LSVGPFVGVQRPLGFWKKG-AFFVVSTSGHLLLYDPNTQEMR-DLGV 338 (379)
Q Consensus 294 ~~i~~~~~~~~~~~~~~~~-~il~~~~~~~l~~yd~~t~~~~-~v~~ 338 (379)
.+|+... .+.++..++ .+++..++..+..+|++|.+.. .+..
T Consensus 130 ~ti~~~~---eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 130 RTTRYSG---EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp EEEECSS---CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred EEEeCCC---ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence 5565322 233343445 4555555889999999997755 4554
No 55
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=84.31 E-value=12 Score=32.70 Aligned_cols=105 Identities=8% Similarity=-0.041 Sum_probs=59.6
Q ss_pred ccEEEEEECCCceEEEecCCCCCCCCCcEEE-EECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEee
Q 039590 232 HAVILSFHLGNDVFEEVQEPYIPQSEPTIIG-VYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWK 310 (379)
Q Consensus 232 ~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~ 310 (379)
...+..+|..+.++..+...... .....++ .-+|+|+++........+.+|-++...+..+..+.....-..-+.+..
T Consensus 17 ~i~v~~~d~~tg~~~~~~~~~~~-~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp 95 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTNDGLLAAT-QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE 95 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEC-SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET
T ss_pred CEEEEEEcCCCCeEEEeeeeecc-CCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC
Confidence 34678888888887765432221 1112344 347886666543235688899887666655554321111123355667
Q ss_pred CCeEEEEEe--CCEEEEEeCC-CCcEEEeE
Q 039590 311 KGAFFVVST--SGHLLLYDPN-TQEMRDLG 337 (379)
Q Consensus 311 ~~~il~~~~--~~~l~~yd~~-t~~~~~v~ 337 (379)
+|+.++... ++.+.+||+. +++.+.+.
T Consensus 96 dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~ 125 (347)
T 3hfq_A 96 ARQLVYSANYHKGTAEVMKIAADGALTLTD 125 (347)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred CCCEEEEEeCCCCEEEEEEeCCCCCeeecc
Confidence 777544443 5789999984 44555443
No 56
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=84.27 E-value=21 Score=31.31 Aligned_cols=192 Identities=9% Similarity=-0.052 Sum_probs=98.4
Q ss_pred ecceEEEecCCCCeEEEEecCCCce-ecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEE
Q 039590 107 FDGIFCIHGPTNDRLILCNLETKES-RTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHV 185 (379)
Q Consensus 107 ~~GLl~~~~~~~~~~~V~NP~T~~~-~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~ 185 (379)
.++.+.+.......+.|+|+.|++. ..+|.... ..++.+++. . ++..... . ...+
T Consensus 52 ~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~-----------p~~i~~~~~--g-~lyv~~~-~---------~~~v 107 (328)
T 3dsm_A 52 RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTS-----------PRYIHFLSD--E-KAYVTQI-W---------DYRI 107 (328)
T ss_dssp ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSS-----------EEEEEEEET--T-EEEEEEB-S---------CSEE
T ss_pred ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCC-----------CcEEEEeCC--C-eEEEEEC-C---------CCeE
Confidence 4566666644445799999999986 44542211 245555443 2 4433311 1 1234
Q ss_pred EEEEcCCCccc-ccccccCCcce--eeeccccEEECceEeeEeecCCCCccEEEEEECCCceEE-EecCCCCCCCCCcEE
Q 039590 186 AMYNLRTNSWR-DLKSFKSDHYV--MSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFE-EVQEPYIPQSEPTII 261 (379)
Q Consensus 186 ~vyss~~~~W~-~~~~~~~~~~~--~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~-~i~~P~~~~~~~~~l 261 (379)
.+++..+++-. .++ ..... ......-+..+|.+|...... ...|..+|+.+.+.. .++..... . .+
T Consensus 108 ~~iD~~t~~~~~~i~---~g~~~~~~~~p~~i~~~~~~lyv~~~~~---~~~v~viD~~t~~~~~~i~~g~~p--~--~i 177 (328)
T 3dsm_A 108 FIINPKTYEITGYIE---CPDMDMESGSTEQMVQYGKYVYVNCWSY---QNRILKIDTETDKVVDELTIGIQP--T--SL 177 (328)
T ss_dssp EEEETTTTEEEEEEE---CTTCCTTTCBCCCEEEETTEEEEEECTT---CCEEEEEETTTTEEEEEEECSSCB--C--CC
T ss_pred EEEECCCCeEEEEEE---cCCccccCCCcceEEEECCEEEEEcCCC---CCEEEEEECCCCeEEEEEEcCCCc--c--ce
Confidence 48888876532 122 11100 001111233677887765321 248999999987653 45543222 1 22
Q ss_pred E-EECCeEEEEEEcCC--------CCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEEEEeCCEEEEEeCCCCc
Q 039590 262 G-VYNHSLCVLLSHNI--------ENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQE 332 (379)
Q Consensus 262 ~-~~~G~L~l~~~~~~--------~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~ 332 (379)
. .-+|+++++..... ...+.++-.+.....+...++.. .-..-+.+..+++.+++... .++.+|+++++
T Consensus 178 ~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g-~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~ 255 (328)
T 3dsm_A 178 VMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG-DWPSEVQLNGTRDTLYWINN-DIWRMPVEADR 255 (328)
T ss_dssp EECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT-CCCEEEEECTTSCEEEEESS-SEEEEETTCSS
T ss_pred EEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC-CCceeEEEecCCCEEEEEcc-EEEEEECCCCc
Confidence 2 34688877764310 13444443333443333333211 11234555555666555444 89999999988
Q ss_pred EE
Q 039590 333 MR 334 (379)
Q Consensus 333 ~~ 334 (379)
+.
T Consensus 256 ~~ 257 (328)
T 3dsm_A 256 VP 257 (328)
T ss_dssp CC
T ss_pred ee
Confidence 64
No 57
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=83.76 E-value=21 Score=31.71 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=57.6
Q ss_pred cccEEECceEeeEeecCCCCccEEEEEECCCce--EEEecCCCCCCCCCcEEEEECCeEEEEEEcCCCCEEEEEEEcC--
Q 039590 212 SGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDV--FEEVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKD-- 287 (379)
Q Consensus 212 ~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~--~~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~-- 287 (379)
...+..+|.+|..+..+ .|.+||..+.+ |+. +++..... ..+..+|.+++... ...+..+-.+.
T Consensus 97 ~~~~~~~~~v~v~~~~g-----~l~a~d~~tG~~~W~~-~~~~~~~~---~p~~~~~~v~v~~~---~g~l~~~d~~tG~ 164 (376)
T 3q7m_A 97 GGVTVSGGHVYIGSEKA-----QVYALNTSDGTVAWQT-KVAGEALS---RPVVSDGLVLIHTS---NGQLQALNEADGA 164 (376)
T ss_dssp EEEEEETTEEEEEETTS-----EEEEEETTTCCEEEEE-ECSSCCCS---CCEEETTEEEEECT---TSEEEEEETTTCC
T ss_pred cCceEeCCEEEEEcCCC-----EEEEEECCCCCEEEEE-eCCCceEc---CCEEECCEEEEEcC---CCeEEEEECCCCc
Confidence 34566788888866544 89999987554 543 33322211 22344665554332 23333333222
Q ss_pred CeEEEEEEECCC--CCcccceEEeeCCeEEEEEeCCEEEEEeCCCCcEEE
Q 039590 288 KCWIKQLSVGPF--VGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRD 335 (379)
Q Consensus 288 ~~W~~~~~i~~~--~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~~ 335 (379)
..|.....-+.. .....|.. .++.+++...++.++++|+++++...
T Consensus 165 ~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w 212 (376)
T 3q7m_A 165 VKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIW 212 (376)
T ss_dssp EEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEE
Confidence 456543211110 01122322 25666665557899999999988654
No 58
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=83.76 E-value=20 Score=30.66 Aligned_cols=192 Identities=13% Similarity=0.109 Sum_probs=90.6
Q ss_pred CeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCccccc
Q 039590 119 DRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDL 198 (379)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 198 (379)
..++++||.+++...+..+...... ....++.+|+..+.. .... .. ..+.+|+.. +..+..
T Consensus 46 ~~i~~~d~~~g~~~~~~~~~~~~~~-----~~~~~i~~~~~~g~l--~v~~---~~--------~~l~~~d~~-g~~~~~ 106 (314)
T 1pjx_A 46 GEILRIDLKTGKKTVICKPEVNGYG-----GIPAGCQCDRDANQL--FVAD---MR--------LGLLVVQTD-GTFEEI 106 (314)
T ss_dssp CEEEEECTTTCCEEEEECCEETTEE-----CCEEEEEECSSSSEE--EEEE---TT--------TEEEEEETT-SCEEEC
T ss_pred CEEEEEeCCCCcEEEEEecccCCCC-----CCCceEEEecCCCcE--EEEE---CC--------CCEEEEeCC-CCEEEE
Confidence 4689999999987765431110000 123566666652322 1111 00 124478777 655444
Q ss_pred -ccccCCcceeeeccccEEE--CceEeeEeecCC-----------CCccEEEEEECCCceEEEecCCCCCCCCCcEEEE-
Q 039590 199 -KSFKSDHYVMSFWSGSLYV--DGVCYWLSRFRN-----------NDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGV- 263 (379)
Q Consensus 199 -~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~-----------~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~- 263 (379)
....... +.. ...++.+ +|.+|+...... .....|..+|.. .++..+.-... ....++.
T Consensus 107 ~~~~~~~~-~~~-~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~---~~~~i~~~ 180 (314)
T 1pjx_A 107 AKKDSEGR-RMQ-GCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ---FPNGIAVR 180 (314)
T ss_dssp CSBCTTSC-BCB-CCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES---SEEEEEEE
T ss_pred EeccCCCc-ccc-CCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCC---CcceEEEe
Confidence 2100010 100 1223333 677766543210 011478999987 55544311100 1113332
Q ss_pred ----ECCe-EEEEEEcCCCCEEEEEEEc-CCeEEEEEE---ECCCC-CcccceEEeeCCeEEEEEe-CCEEEEEeCCCCc
Q 039590 264 ----YNHS-LCVLLSHNIENYYDIWVMK-DKCWIKQLS---VGPFV-GVQRPLGFWKKGAFFVVST-SGHLLLYDPNTQE 332 (379)
Q Consensus 264 ----~~G~-L~l~~~~~~~~~i~iW~l~-~~~W~~~~~---i~~~~-~~~~~~~~~~~~~il~~~~-~~~l~~yd~~t~~ 332 (379)
-+|+ |++.... ...+.+|-++ +........ +.... ....-+.+..+|.+++... ++.+..||+++++
T Consensus 181 ~~~d~dg~~l~v~~~~--~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 181 HMNDGRPYQLIVAETP--TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp ECTTSCEEEEEEEETT--TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS
T ss_pred cccCCCCCEEEEEECC--CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc
Confidence 3453 5554433 5677777665 233332222 22111 1123344556678877754 6789999998554
Q ss_pred -EEEeE
Q 039590 333 -MRDLG 337 (379)
Q Consensus 333 -~~~v~ 337 (379)
...+.
T Consensus 259 ~~~~~~ 264 (314)
T 1pjx_A 259 PKMRIR 264 (314)
T ss_dssp CSEEEE
T ss_pred EeEEEe
Confidence 34443
No 59
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=83.38 E-value=22 Score=30.90 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=39.7
Q ss_pred CCeEEEEEEcCCCCEEEEEEEcC-CeEEEEEEECCCCCcccceEEeeCCeEEEEE-eCCEEEEEeCCCCcEEE
Q 039590 265 NHSLCVLLSHNIENYYDIWVMKD-KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVS-TSGHLLLYDPNTQEMRD 335 (379)
Q Consensus 265 ~G~L~l~~~~~~~~~i~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~-~~~~l~~yd~~t~~~~~ 335 (379)
+|.+.+++.. +..+.+|-+.. .. ....+.....-..-+.+..++..++.. .++.+.+||+++++...
T Consensus 186 ~~~~l~~~~~--dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 186 KGKYIIAGHK--DGKISKYDVSNNYE--YVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK 254 (369)
T ss_dssp GGCEEEEEET--TSEEEEEETTTTTE--EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCEEEEEcC--CCEEEEEECCCCcE--eEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceee
Confidence 4555555554 67899998875 22 233333222212234444566655554 47899999999877554
No 60
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=83.15 E-value=26 Score=31.66 Aligned_cols=194 Identities=10% Similarity=0.060 Sum_probs=94.6
Q ss_pred eecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEE
Q 039590 106 PFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHV 185 (379)
Q Consensus 106 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~ 185 (379)
..+|.|...+....+++.+++.++....+-...... ..++.+|+..+...+.-. . ....+
T Consensus 125 ~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~---------p~glavd~~~g~lY~~d~----~------~~~I~- 184 (386)
T 3v65_B 125 HRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLES---------PGGLAVDWVHDKLYWTDS----G------TSRIE- 184 (386)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSC---------CCCEEEETTTTEEEEEET----T------TTEEE-
T ss_pred cCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCC---------ccEEEEEeCCCeEEEEcC----C------CCeEE-
Confidence 356777777655567888888777544432221111 245666765443222111 0 11223
Q ss_pred EEEEcCCCcccccccccCCcceeeeccccEEE---CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEE
Q 039590 186 AMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYV---DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIG 262 (379)
Q Consensus 186 ~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~ 262 (379)
+++..+..-+.+.. ..+ . ...++.+ +|.|||..... ...|..+|+....-..+-.. .. .....|+
T Consensus 185 -~~~~dg~~~~~l~~--~~l---~-~P~giavdp~~g~ly~td~~~---~~~I~r~~~dG~~~~~~~~~-~~-~~PnGla 252 (386)
T 3v65_B 185 -VANLDGAHRKVLLW--QSL---E-KPRAIALHPMEGTIYWTDWGN---TPRIEASSMDGSGRRIIADT-HL-FWPNGLT 252 (386)
T ss_dssp -ECBTTSCSCEEEEC--SSC---S-CEEEEEEETTTTEEEEEECSS---SCEEEEEETTSCSCEEEECS-SC-SCEEEEE
T ss_pred -EEeCCCCceEEeec--CCC---C-CCcEEEEEcCCCeEEEeccCC---CCEEEEEeCCCCCcEEEEEC-CC-CCeeeEE
Confidence 66655433222220 011 0 1123333 68999987543 35899999876543333211 11 1122455
Q ss_pred E--ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEe-eCCeEEEEEe-CCEEEEEeCCCCc-EEEeE
Q 039590 263 V--YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFW-KKGAFFVVST-SGHLLLYDPNTQE-MRDLG 337 (379)
Q Consensus 263 ~--~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~-~~~~il~~~~-~~~l~~yd~~t~~-~~~v~ 337 (379)
. .+|.|+++... ...|...-++. .-.+ ..+. ..+..|.++. ..+.+|+... .+.+..+|..+++ .+.+.
T Consensus 253 vd~~~~~lY~aD~~--~~~I~~~d~dG-~~~~-~~~~--~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 253 IDYAGRRMYWVDAK--HHVIERANLDG-SHRK-AVIS--QGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEGGGTEEEEEETT--TTEEEEECTTS-CSCE-EEEC--SSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EeCCCCEEEEEECC--CCEEEEEeCCC-CeeE-EEEE--CCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 4 47889888755 34443333332 1111 1111 1234565543 3445665543 6789999954544 44443
No 61
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=82.05 E-value=12 Score=32.83 Aligned_cols=97 Identities=11% Similarity=0.124 Sum_probs=57.0
Q ss_pred cEEEEEECCCceEEEec-CCCCCCCCCcEEEE-ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEee
Q 039590 233 AVILSFHLGNDVFEEVQ-EPYIPQSEPTIIGV-YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWK 310 (379)
Q Consensus 233 ~~i~~fD~~~e~~~~i~-~P~~~~~~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~ 310 (379)
..|..+|+.+.++..+. ++... ..-..+.. -+|.+.+.+.. +..+.+|-++...+.....+.....-..-+.+..
T Consensus 30 ~~v~i~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 106 (372)
T 1k8k_C 30 HEVHIYEKSGNKWVQVHELKEHN-GQVTGVDWAPDSNRIVTCGT--DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP 106 (372)
T ss_dssp SEEEEEEEETTEEEEEEEEECCS-SCEEEEEEETTTTEEEEEET--TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT
T ss_pred CEEEEEeCCCCcEEeeeeecCCC-CcccEEEEeCCCCEEEEEcC--CCeEEEEECCCCeeeeeEEeecCCCceeEEEECC
Confidence 47888888888654432 22111 11113443 36776666665 6789999998766666555443322223344445
Q ss_pred CCeEEEEE-eCCEEEEEeCCCCc
Q 039590 311 KGAFFVVS-TSGHLLLYDPNTQE 332 (379)
Q Consensus 311 ~~~il~~~-~~~~l~~yd~~t~~ 332 (379)
++..++.. .++.+.+||+++++
T Consensus 107 ~~~~l~~~~~d~~v~i~d~~~~~ 129 (372)
T 1k8k_C 107 NEKKFAVGSGSRVISICYFEQEN 129 (372)
T ss_dssp TSSEEEEEETTSSEEEEEEETTT
T ss_pred CCCEEEEEeCCCEEEEEEecCCC
Confidence 66655554 46788888888766
No 62
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=81.98 E-value=7.3 Score=35.80 Aligned_cols=193 Identities=11% Similarity=0.128 Sum_probs=85.1
Q ss_pred cceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEE
Q 039590 108 DGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAM 187 (379)
Q Consensus 108 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~v 187 (379)
++-++..+.....+.|||..+++...+-.... +. ....++.+.|..+.+-+.+ ..+. . +.+
T Consensus 131 ~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~g--H~-----~~V~~l~f~p~~~~~l~s~----s~D~------~--v~i 191 (435)
T 4e54_B 131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIG--AG-----GSITGLKFNPLNTNQFYAS----SMEG------T--TRL 191 (435)
T ss_dssp CTTCEEEEETTSCEEEECSSCCSCCEEECCCS--SS-----CCCCEEEECSSCTTEEEEE----CSSS------C--EEE
T ss_pred CCCEEEEEeCCCEEEEEECCCCCceeEEEccC--CC-----CCEEEEEEeCCCCCEEEEE----eCCC------E--EEE
Confidence 44333333333469999998886433221111 11 1134555666444442211 1111 3 348
Q ss_pred EEcCCCcccccccccCCcceeeeccccE--EECceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCc-EEEEE
Q 039590 188 YNLRTNSWRDLKSFKSDHYVMSFWSGSL--YVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPT-IIGVY 264 (379)
Q Consensus 188 yss~~~~W~~~~~~~~~~~~~~~~~~~v--~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~-~l~~~ 264 (379)
++.+++.-+.... .. .......++ .-+|.+...+... ..|..+|+.+.....+.... ... .+...
T Consensus 192 wd~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~l~~g~~d----g~i~~wd~~~~~~~~~~~h~----~~v~~v~~~ 259 (435)
T 4e54_B 192 QDFKGNILRVFAS---SD-TINIWFCSLDVSASSRMVVTGDNV----GNVILLNMDGKELWNLRMHK----KKVTHVALN 259 (435)
T ss_dssp EETTSCEEEEEEC---CS-SCSCCCCCEEEETTTTEEEEECSS----SBEEEEESSSCBCCCSBCCS----SCEEEEEEC
T ss_pred eeccCCceeEEec---cC-CCCccEEEEEECCCCCEEEEEeCC----CcEeeeccCcceeEEEeccc----ceEEeeeec
Confidence 8887765444331 00 000011112 1244443333332 46788888765433222211 111 23322
Q ss_pred -CCe-EEEEEEcCCCCEEEEEEEcCCeEEEEE-EECCCCCcccceEEeeCCeEEEEE-eCCEEEEEeCCCCcE
Q 039590 265 -NHS-LCVLLSHNIENYYDIWVMKDKCWIKQL-SVGPFVGVQRPLGFWKKGAFFVVS-TSGHLLLYDPNTQEM 333 (379)
Q Consensus 265 -~G~-L~l~~~~~~~~~i~iW~l~~~~W~~~~-~i~~~~~~~~~~~~~~~~~il~~~-~~~~l~~yd~~t~~~ 333 (379)
+|. +.+.+.. +..+.||-+....-.... .......-..-+.+..+|..++.. .++.+.+||.++...
T Consensus 260 p~~~~~~~s~s~--d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 260 PCCDWFLATASV--DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC 330 (435)
T ss_dssp TTCSSEEEEEET--TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS
T ss_pred CCCceEEEEecC--cceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCcc
Confidence 344 4444444 678899987651100000 000000001112233456655554 477899999987654
No 63
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=79.86 E-value=32 Score=30.44 Aligned_cols=191 Identities=12% Similarity=0.044 Sum_probs=94.4
Q ss_pred cceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEE
Q 039590 108 DGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAM 187 (379)
Q Consensus 108 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~v 187 (379)
+..+++.+.....+.++|+.+++....-... . ...++.+.+..+ +-++.. .. ...+.+
T Consensus 85 g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~----~------~~~~~~~s~dg~-~l~~~~---~~--------~~~v~~ 142 (391)
T 1l0q_A 85 GKQVYVTNMASSTLSVIDTTSNTVAGTVKTG----K------SPLGLALSPDGK-KLYVTN---NG--------DKTVSV 142 (391)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECS----S------SEEEEEECTTSS-EEEEEE---TT--------TTEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCeEEEEEeCC----C------CcceEEECCCCC-EEEEEe---CC--------CCEEEE
Confidence 3344455544457999999998765432211 0 134566655432 221221 11 123448
Q ss_pred EEcCCCcccccccccCCcceeeeccccEEECceEeeEeecCCCCccEEEEEECCCceEEE-ecCCCCCCCCCcEEEE-EC
Q 039590 188 YNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEE-VQEPYIPQSEPTIIGV-YN 265 (379)
Q Consensus 188 yss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~-i~~P~~~~~~~~~l~~-~~ 265 (379)
++.++++....-. ....+... .+.-+|..-+++... ...|..+|+.+.+... +.... ....+.. -+
T Consensus 143 ~d~~~~~~~~~~~--~~~~~~~~---~~~~dg~~l~~~~~~---~~~v~~~d~~~~~~~~~~~~~~----~~~~~~~~~~ 210 (391)
T 1l0q_A 143 INTVTKAVINTVS--VGRSPKGI---AVTPDGTKVYVANFD---SMSISVIDTVTNSVIDTVKVEA----APSGIAVNPE 210 (391)
T ss_dssp EETTTTEEEEEEE--CCSSEEEE---EECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEECSS----EEEEEEECTT
T ss_pred EECCCCcEEEEEe--cCCCcceE---EECCCCCEEEEEeCC---CCEEEEEECCCCeEEEEEecCC----CccceEECCC
Confidence 8887765433220 01111111 111245433333332 2579999998876533 22211 1113332 35
Q ss_pred CeEEEEEEc-CCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEEEE--eCCEEEEEeCCCCcEEE
Q 039590 266 HSLCVLLSH-NIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVS--TSGHLLLYDPNTQEMRD 335 (379)
Q Consensus 266 G~L~l~~~~-~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~--~~~~l~~yd~~t~~~~~ 335 (379)
|+..++... .....+.+|-+.... .+..+..... ..-+.+..+++.+++. .++.+.+||+++++...
T Consensus 211 g~~l~~~~~~~~~~~v~~~d~~~~~--~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~ 280 (391)
T 1l0q_A 211 GTKAYVTNVDKYFNTVSMIDTGTNK--ITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITA 280 (391)
T ss_dssp SSEEEEEEECSSCCEEEEEETTTTE--EEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCEEEEEecCcCCCcEEEEECCCCe--EEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEE
Confidence 554444432 136788888877532 2333332221 1234455567655443 37899999999987654
No 64
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=79.84 E-value=30 Score=30.16 Aligned_cols=95 Identities=12% Similarity=0.167 Sum_probs=57.6
Q ss_pred EEEEEECCCceEEEec-CCCCCCCCCc-EEEEE-C--CeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEE
Q 039590 234 VILSFHLGNDVFEEVQ-EPYIPQSEPT-IIGVY-N--HSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGF 308 (379)
Q Consensus 234 ~i~~fD~~~e~~~~i~-~P~~~~~~~~-~l~~~-~--G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~ 308 (379)
.|..+|+.+++...+. +.... ... .+... + |.+.+.+.. +..+.||-++...|.....+.....-..-+.+
T Consensus 34 ~i~iw~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 109 (379)
T 3jrp_A 34 TIKIFEVEGETHKLIDTLTGHE--GPVWRVDWAHPKFGTILASCSY--DGKVLIWKEENGRWSQIAVHAVHSASVNSVQW 109 (379)
T ss_dssp CEEEEEEETTEEEEEEEECCCS--SCEEEEEECCGGGCSEEEEEET--TSCEEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred cEEEEecCCCcceeeeEecCCC--CcEEEEEeCCCCCCCEEEEecc--CCEEEEEEcCCCceeEeeeecCCCcceEEEEe
Confidence 5777777755555443 22111 112 33332 2 677666665 67899999998777777766543332333445
Q ss_pred eeC--CeEEEE-EeCCEEEEEeCCCCc
Q 039590 309 WKK--GAFFVV-STSGHLLLYDPNTQE 332 (379)
Q Consensus 309 ~~~--~~il~~-~~~~~l~~yd~~t~~ 332 (379)
..+ +.+++. ..++.+.+||++++.
T Consensus 110 ~~~~~~~~l~~~~~d~~i~v~d~~~~~ 136 (379)
T 3jrp_A 110 APHEYGPLLLVASSDGKVSVVEFKENG 136 (379)
T ss_dssp CCGGGCSEEEEEETTSEEEEEECCTTS
T ss_pred CCCCCCCEEEEecCCCcEEEEecCCCC
Confidence 445 555554 457899999998874
No 65
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=79.69 E-value=36 Score=30.96 Aligned_cols=57 Identities=14% Similarity=0.164 Sum_probs=30.4
Q ss_pred CCEEEEEEEcCCeEEEEEEEC-C-CCCcccceEEeeCCeEEEEEeCCEEEEEeCCCCcEEE
Q 039590 277 ENYYDIWVMKDKCWIKQLSVG-P-FVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRD 335 (379)
Q Consensus 277 ~~~i~iW~l~~~~W~~~~~i~-~-~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~~ 335 (379)
...+.||-..... .+..+. + ...+.....+..+|.++....++.+.+||+++++.++
T Consensus 377 ~~~i~iwd~~~g~--~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~rK 435 (435)
T 4e54_B 377 LRTIDVFDGNSGK--MMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQEARTRK 435 (435)
T ss_dssp CCCEEEECSSSCC--EEEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC------
T ss_pred CCEEEEEECCCCc--EEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcCeeeC
Confidence 3568888766522 122222 1 1222222345567787777668899999999987653
No 66
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=79.67 E-value=31 Score=30.24 Aligned_cols=114 Identities=13% Similarity=0.149 Sum_probs=65.3
Q ss_pred Cce-EeeEeecCCCCccEEEEEECCCceEEEec-C---CCCCCCCCcEEE-EECCeEEEEEEcCCCCEEEEEEEcC--Ce
Q 039590 218 DGV-CYWLSRFRNNDHAVILSFHLGNDVFEEVQ-E---PYIPQSEPTIIG-VYNHSLCVLLSHNIENYYDIWVMKD--KC 289 (379)
Q Consensus 218 ~G~-lywl~~~~~~~~~~i~~fD~~~e~~~~i~-~---P~~~~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~--~~ 289 (379)
+|. +|..... ...|..||+.+.++..+. + |... .....+. .-+|+..++........+.||.++. ..
T Consensus 221 dg~~l~v~~~~----~~~v~v~~~~~g~~~~~~~~~~~~~~~-~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~ 295 (361)
T 3scy_A 221 DGKFAYLINEI----GGTVIAFRYADGMLDEIQTVAADTVNA-QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT 295 (361)
T ss_dssp TSSEEEEEETT----TCEEEEEEEETTEEEEEEEEESCSSCC-CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC
T ss_pred CCCEEEEEcCC----CCeEEEEEecCCceEEeEEEecCCCCC-CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc
Confidence 565 4444322 247888888777665442 2 2211 1112344 3467754444441157899999973 56
Q ss_pred EEEEEEECCCCCcccceEEeeCCeEEEEEe--CCEEEE--EeCCCCcEEEeE
Q 039590 290 WIKQLSVGPFVGVQRPLGFWKKGAFFVVST--SGHLLL--YDPNTQEMRDLG 337 (379)
Q Consensus 290 W~~~~~i~~~~~~~~~~~~~~~~~il~~~~--~~~l~~--yd~~t~~~~~v~ 337 (379)
+..+..+.. .....-+.+..+|+.++... ++.+.+ +|+++++++.+.
T Consensus 296 ~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 296 LTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp EEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECS
T ss_pred EEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecc
Confidence 666666553 22233456667787555543 456666 688889888765
No 67
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=79.67 E-value=22 Score=29.91 Aligned_cols=109 Identities=9% Similarity=0.024 Sum_probs=60.8
Q ss_pred CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEEE-ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEE
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGV-YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSV 296 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i 296 (379)
+|.+|+..... ..|..||.. .++..+.+|... .....++. .+|.|++.... ...+..+-.+ ..+. ...+
T Consensus 30 ~g~l~v~~~~~----~~v~~~~~~-~~~~~~~~~~~~-~~~~~i~~~~~g~l~v~~~~--~~~v~~~d~~-g~~~-~~~~ 99 (300)
T 2qc5_A 30 DGKVWFTQHKA----NKISSLDQS-GRIKEFEVPTPD-AKVMCLIVSSLGDIWFTENG--ANKIGKLSKK-GGFT-EYPL 99 (300)
T ss_dssp TSCEEEEETTT----TEEEEECTT-SCEEEEECSSTT-CCEEEEEECTTSCEEEEETT--TTEEEEECTT-SCEE-EEEC
T ss_pred CCCEEEEcCCC----CeEEEECCC-CceEEEECCCCC-CcceeEEECCCCCEEEEecC--CCeEEEECCC-CCeE-EecC
Confidence 58877765432 489999998 778777776432 11224443 45777776543 3444443333 3332 2222
Q ss_pred CCCCCcccceEEeeCCeEEEEEe-CCEEEEEeCCCCcEEEeE
Q 039590 297 GPFVGVQRPLGFWKKGAFFVVST-SGHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 297 ~~~~~~~~~~~~~~~~~il~~~~-~~~l~~yd~~t~~~~~v~ 337 (379)
+.......-+.+..+|.+++... ++.++.||++ ++++.+.
T Consensus 100 ~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~ 140 (300)
T 2qc5_A 100 PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYD 140 (300)
T ss_dssp SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEcc
Confidence 21111122233445677777665 5789999998 6666554
No 68
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=79.59 E-value=33 Score=30.50 Aligned_cols=95 Identities=11% Similarity=-0.011 Sum_probs=51.2
Q ss_pred EEEEEECCCceEEEecCCCCCCCCCcEEEEE--CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeC
Q 039590 234 VILSFHLGNDVFEEVQEPYIPQSEPTIIGVY--NHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKK 311 (379)
Q Consensus 234 ~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~~--~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~ 311 (379)
.|..+|+.+..-....+.......-..+... +|.+.+.+.. +..+.+|-++.. ..+..+.....-..-+.+..+
T Consensus 241 ~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~--dg~v~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~ 316 (416)
T 2pm9_A 241 SILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR--DNTVLLWNPESA--EQLSQFPARGNWCFKTKFAPE 316 (416)
T ss_dssp CCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES--SSEEEEECSSSC--CEEEEEECSSSCCCCEEECTT
T ss_pred eEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC--CCCEEEeeCCCC--ccceeecCCCCceEEEEECCC
Confidence 6778888764211111110111111134432 6777776665 678999987752 233344322222233455556
Q ss_pred C-eEEEEE-eCCEEEEEeCCCCc
Q 039590 312 G-AFFVVS-TSGHLLLYDPNTQE 332 (379)
Q Consensus 312 ~-~il~~~-~~~~l~~yd~~t~~ 332 (379)
+ .+++.. .++.+.+||+++.+
T Consensus 317 ~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 317 APDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp CTTEEEECCSSSEEEEEESCCCC
T ss_pred CCCEEEEEecCCcEEEEEccCCC
Confidence 6 565554 47899999998765
No 69
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=79.53 E-value=33 Score=30.37 Aligned_cols=97 Identities=10% Similarity=0.023 Sum_probs=48.2
Q ss_pred EEEEEECCCceEEE-ecCCCCCCCCCcEEEEE--CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEee
Q 039590 234 VILSFHLGNDVFEE-VQEPYIPQSEPTIIGVY--NHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWK 310 (379)
Q Consensus 234 ~i~~fD~~~e~~~~-i~~P~~~~~~~~~l~~~--~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~ 310 (379)
.|..+|+.+.+-.. +..... ......+... ++.+.+.+.. +..+.||-+.... ....+.....-..-+.+..
T Consensus 205 ~v~~wd~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~~la~g~~--d~~i~~wd~~~~~--~~~~~~~~~~~v~~l~~sp 279 (357)
T 4g56_B 205 RILLWDTRKPKPATRIDFCAS-DTIPTSVTWHPEKDDTFACGDE--TGNVSLVNIKNPD--SAQTSAVHSQNITGLAYSY 279 (357)
T ss_dssp CEEECCTTSSSCBCBCCCTTC-CSCEEEEEECTTSTTEEEEEES--SSCEEEEESSCGG--GCEEECCCSSCEEEEEECS
T ss_pred ceEEEECCCCceeeeeeeccc-cccccchhhhhcccceEEEeec--ccceeEEECCCCc--EeEEEeccceeEEEEEEcC
Confidence 57777877654221 111111 1111133322 3556555554 6789999877511 1222322211112234444
Q ss_pred CC-eEEEE-EeCCEEEEEeCCCCcEEE
Q 039590 311 KG-AFFVV-STSGHLLLYDPNTQEMRD 335 (379)
Q Consensus 311 ~~-~il~~-~~~~~l~~yd~~t~~~~~ 335 (379)
++ .++.. ..++.+.+||.++++...
T Consensus 280 ~~~~~lasgs~D~~i~iwd~~~~~~~~ 306 (357)
T 4g56_B 280 HSSPFLASISEDCTVAVLDADFSEVFR 306 (357)
T ss_dssp SSSCCEEEEETTSCEEEECTTSCEEEE
T ss_pred CCCCEEEEEeCCCEEEEEECCCCcEeE
Confidence 44 44443 347789999999887544
No 70
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=79.43 E-value=29 Score=30.42 Aligned_cols=98 Identities=10% Similarity=0.085 Sum_probs=52.6
Q ss_pred EEEEEECCCceEEEec-CCCCCCCCCcEEEE-ECCeEEEEEEcCCCCEEEEEEEcC-CeEEEEEEECCCCCcccceEEee
Q 039590 234 VILSFHLGNDVFEEVQ-EPYIPQSEPTIIGV-YNHSLCVLLSHNIENYYDIWVMKD-KCWIKQLSVGPFVGVQRPLGFWK 310 (379)
Q Consensus 234 ~i~~fD~~~e~~~~i~-~P~~~~~~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~ 310 (379)
.|..+|..+..+..+. +.... ..-..+.. -+|.+.+.+.. +..+.||-+.. ..+..+..+.....-..-+.+..
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~-~~v~~v~~sp~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p 160 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHE-NEVKSVAWAPSGNLLATCSR--DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP 160 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCS-SCEEEEEECTTSSEEEEEET--TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS
T ss_pred cEEEEEccCCCeEEEEEccCCC-CCceEEEEeCCCCEEEEEEC--CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC
Confidence 5667777766654432 22111 11113332 35776666665 67899999987 45554444443222122234444
Q ss_pred CCeEEEEE-eCCEEEEEeCCCCcEE
Q 039590 311 KGAFFVVS-TSGHLLLYDPNTQEMR 334 (379)
Q Consensus 311 ~~~il~~~-~~~~l~~yd~~t~~~~ 334 (379)
++.+++.. .++.+.+||.+++++.
T Consensus 161 ~~~~l~s~s~d~~i~~w~~~~~~~~ 185 (345)
T 3fm0_A 161 SQELLASASYDDTVKLYREEEDDWV 185 (345)
T ss_dssp SSSCEEEEETTSCEEEEEEETTEEE
T ss_pred CCCEEEEEeCCCcEEEEEecCCCEE
Confidence 55554443 4667888887776544
No 71
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=79.40 E-value=35 Score=30.67 Aligned_cols=194 Identities=12% Similarity=0.141 Sum_probs=95.7
Q ss_pred eecceEEEecCCCCeEEEEecCCCceec-CCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeE
Q 039590 106 PFDGIFCIHGPTNDRLILCNLETKESRT-LPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAH 184 (379)
Q Consensus 106 s~~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~ 184 (379)
+.+|-+++.+.....+.+||+.+++... ++... ....++.+++..+ + ++... .. ...
T Consensus 178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-~-l~~~~--~~--------~~~ 235 (433)
T 3bws_A 178 PEHNELWVSQMQANAVHVFDLKTLAYKATVDLTG----------KWSKILLYDPIRD-L-VYCSN--WI--------SED 235 (433)
T ss_dssp GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSS----------SSEEEEEEETTTT-E-EEEEE--TT--------TTE
T ss_pred cCCCEEEEEECCCCEEEEEECCCceEEEEEcCCC----------CCeeEEEEcCCCC-E-EEEEe--cC--------CCc
Confidence 4466666664444579999998876543 22111 1135566666433 2 21211 01 123
Q ss_pred EEEEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecCCC----CccEEEEEECCCceEEEe-cCCCCCCCCCc
Q 039590 185 VAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNN----DHAVILSFHLGNDVFEEV-QEPYIPQSEPT 259 (379)
Q Consensus 185 ~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~----~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~ 259 (379)
+.+|+.+++.....- +....+.. -.+.-+|...+.+..... ....|..+|+.+.+.... ..+.. ..
T Consensus 236 i~~~d~~~~~~~~~~--~~~~~~~~---~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~----~~ 306 (433)
T 3bws_A 236 ISVIDRKTKLEIRKT--DKIGLPRG---LLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGN----KR 306 (433)
T ss_dssp EEEEETTTTEEEEEC--CCCSEEEE---EEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEEC----EE
T ss_pred EEEEECCCCcEEEEe--cCCCCceE---EEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCC----cc
Confidence 448888776543221 11111111 111124544444443210 134788999987654332 22211 11
Q ss_pred EEE-EECCe-EEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEEEEeC----------------C
Q 039590 260 IIG-VYNHS-LCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTS----------------G 321 (379)
Q Consensus 260 ~l~-~~~G~-L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~----------------~ 321 (379)
.+. .-+|+ |++.... ...+.+|-++... .+..+..... ..-+.+..+|..++.... +
T Consensus 307 ~~~~~~~g~~l~~~~~~--~~~v~v~d~~~~~--~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg 381 (433)
T 3bws_A 307 HIVSGNTENKIYVSDMC--CSKIEVYDLKEKK--VQKSIPVFDK-PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLG 381 (433)
T ss_dssp EEEECSSTTEEEEEETT--TTEEEEEETTTTE--EEEEEECSSS-EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCC
T ss_pred eEEECCCCCEEEEEecC--CCEEEEEECCCCc--EEEEecCCCC-CCeEEEcCCCCEEEEEecCCCccccccccccccce
Confidence 233 23453 5554443 6789999887532 2233332211 233455566765554432 4
Q ss_pred EEEEEeCCCCcEEE
Q 039590 322 HLLLYDPNTQEMRD 335 (379)
Q Consensus 322 ~l~~yd~~t~~~~~ 335 (379)
.+.+||+++++...
T Consensus 382 ~v~~~d~~~~~~~~ 395 (433)
T 3bws_A 382 KVYVIDTTTDTVKE 395 (433)
T ss_dssp EEEEEETTTTEEEE
T ss_pred EEEEEECCCCcEEE
Confidence 89999999887554
No 72
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=79.35 E-value=21 Score=31.52 Aligned_cols=67 Identities=12% Similarity=-0.030 Sum_probs=38.3
Q ss_pred CCeEEEEEEcCCCCEEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEEEeCCEEEEEeCCCCcE
Q 039590 265 NHSLCVLLSHNIENYYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEM 333 (379)
Q Consensus 265 ~G~L~l~~~~~~~~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~ 333 (379)
+|.+.+.+.. +..+.||-+.. .....+..+.....-..-+.+..++.++....++.++.|+...+.+
T Consensus 216 ~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~ 284 (377)
T 3dwl_C 216 SGNALAYAGH--DSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGW 284 (377)
T ss_dssp TSSCEEEEET--TTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---
T ss_pred CCCEEEEEeC--CCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCce
Confidence 5665555554 67899999887 2222223333222222345566788888777777788888875443
No 73
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=79.25 E-value=33 Score=30.84 Aligned_cols=110 Identities=10% Similarity=-0.030 Sum_probs=60.7
Q ss_pred CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCC-CCC-Cc-EEEE-ECCeEEEEEEcCCCCEEEEEEEcCCeEEEE
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIP-QSE-PT-IIGV-YNHSLCVLLSHNIENYYDIWVMKDKCWIKQ 293 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~-~~~-~~-~l~~-~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~ 293 (379)
+|.++...... ..|..+|+.+.+......+... ... .. .+.. -+|.+.+.... +..+.+|-++...-.
T Consensus 133 ~~~~~~~~~~~----~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~--d~~v~~~d~~~~~~~-- 204 (433)
T 3bws_A 133 NTRLAIPLLED----EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ--ANAVHVFDLKTLAYK-- 204 (433)
T ss_dssp SSEEEEEBTTS----SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG--GTEEEEEETTTCCEE--
T ss_pred CCeEEEEeCCC----CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECC--CCEEEEEECCCceEE--
Confidence 56665554333 3689999987766543211111 111 11 2332 36777766655 678999988763222
Q ss_pred EEECCCCCcccceEEeeCCeEEEE-E-eCCEEEEEeCCCCcEEE
Q 039590 294 LSVGPFVGVQRPLGFWKKGAFFVV-S-TSGHLLLYDPNTQEMRD 335 (379)
Q Consensus 294 ~~i~~~~~~~~~~~~~~~~~il~~-~-~~~~l~~yd~~t~~~~~ 335 (379)
..+........-+.+..++..++. . .++.+.+||+++++...
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~ 248 (433)
T 3bws_A 205 ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIR 248 (433)
T ss_dssp EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEE
Confidence 222222222233455556665544 4 36799999999887543
No 74
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=78.88 E-value=36 Score=30.44 Aligned_cols=113 Identities=11% Similarity=0.015 Sum_probs=61.5
Q ss_pred CceEeeEeecCCCCccEEEEEECCCceEEE-e-cCCCCCCCCCcEEE-EECCeEEEEEEc-CCCCEEEEEEEcC-CeEEE
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDVFEE-V-QEPYIPQSEPTIIG-VYNHSLCVLLSH-NIENYYDIWVMKD-KCWIK 292 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~~~~-i-~~P~~~~~~~~~l~-~~~G~L~l~~~~-~~~~~i~iW~l~~-~~W~~ 292 (379)
+|.....+... ..|..+|+.+.+-.. + ...... ....+. .-+|.+.+++.. ..+..+.||-+.. ..=..
T Consensus 187 ~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~ 260 (402)
T 2aq5_A 187 DGALICTSCRD----KRVRVIEPRKGTVVAEKDRPHEGT--RPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLS 260 (402)
T ss_dssp TSSCEEEEETT----SEEEEEETTTTEEEEEEECSSCSS--SCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSE
T ss_pred CCCEEEEEecC----CcEEEEeCCCCceeeeeccCCCCC--cceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCce
Confidence 45444444332 489999998766433 2 222111 112343 346776666532 2478899998876 22112
Q ss_pred EEEECCCCCcccceEEeeCCeEEEE-E-eCCEEEEEeCCCCc--EEEeE
Q 039590 293 QLSVGPFVGVQRPLGFWKKGAFFVV-S-TSGHLLLYDPNTQE--MRDLG 337 (379)
Q Consensus 293 ~~~i~~~~~~~~~~~~~~~~~il~~-~-~~~~l~~yd~~t~~--~~~v~ 337 (379)
...++....+ .-+.+..++..+++ . .++.+.+||+++++ +..+.
T Consensus 261 ~~~~~~~~~v-~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~ 308 (402)
T 2aq5_A 261 LQELDTSSGV-LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS 308 (402)
T ss_dssp EEECCCCSSC-EEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE
T ss_pred EEeccCCCce-eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec
Confidence 2233322222 22345556666654 4 37789999999887 55554
No 75
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=78.60 E-value=55 Score=32.42 Aligned_cols=96 Identities=11% Similarity=0.183 Sum_probs=52.1
Q ss_pred cEEEEEECCCceEE-EecCCCCCCCCCcEEEEE---CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEE
Q 039590 233 AVILSFHLGNDVFE-EVQEPYIPQSEPTIIGVY---NHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGF 308 (379)
Q Consensus 233 ~~i~~fD~~~e~~~-~i~~P~~~~~~~~~l~~~---~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~ 308 (379)
..|..+|+.+.+-. .+..+... ....+... +|.+.+++.. +..+.+|-+.... ....+.....-...+.+
T Consensus 163 g~v~vwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~--~~~~~~~~~~~v~~~~~ 236 (814)
T 3mkq_A 163 RTVKVWSLGQSTPNFTLTTGQER--GVNYVDYYPLPDKPYMITASD--DLTIKIWDYQTKS--CVATLEGHMSNVSFAVF 236 (814)
T ss_dssp SEEEEEETTCSSCSEEEECCCTT--CCCEEEECCSTTCCEEEEECT--TSEEEEEETTTTE--EEEEEECCSSCEEEEEE
T ss_pred CeEEEEECCCCcceeEEecCCCC--CEEEEEEEECCCCCEEEEEeC--CCEEEEEECCCCc--EEEEEcCCCCCEEEEEE
Confidence 47888998655432 22222111 11133322 6666666655 6789999877632 22333322221233445
Q ss_pred eeCCeEEEEEe-CCEEEEEeCCCCcEE
Q 039590 309 WKKGAFFVVST-SGHLLLYDPNTQEMR 334 (379)
Q Consensus 309 ~~~~~il~~~~-~~~l~~yd~~t~~~~ 334 (379)
..++.+++... ++.+.+||+.+++..
T Consensus 237 ~~~~~~l~~~~~dg~v~vwd~~~~~~~ 263 (814)
T 3mkq_A 237 HPTLPIIISGSEDGTLKIWNSSTYKVE 263 (814)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTCSEE
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 55666655544 678999999886644
No 76
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=78.56 E-value=22 Score=30.75 Aligned_cols=111 Identities=13% Similarity=0.129 Sum_probs=60.6
Q ss_pred CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEEE-ECCeEEEEEEcCC--CCEEEEEEEcCCeEEEEE
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGV-YNHSLCVLLSHNI--ENYYDIWVMKDKCWIKQL 294 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~-~~G~L~l~~~~~~--~~~i~iW~l~~~~W~~~~ 294 (379)
+|.+||..... ..|..+|..+.++..+..+.. .....++. -+|+|.+...... ...+.+|-.+...-...
T Consensus 55 ~g~l~~~~~~~----~~i~~~d~~~~~~~~~~~~~~--~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~- 127 (333)
T 2dg1_A 55 QGQLFLLDVFE----GNIFKINPETKEIKRPFVSHK--ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI- 127 (333)
T ss_dssp TSCEEEEETTT----CEEEEECTTTCCEEEEEECSS--SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE-
T ss_pred CCCEEEEECCC----CEEEEEeCCCCcEEEEeeCCC--CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEE-
Confidence 68888876543 489999999888776542211 11124444 3678877664421 13444443332221111
Q ss_pred EEC-CCC-CcccceEEeeCCeEEEEEe-------CCEEEEEeCCCCcEEEe
Q 039590 295 SVG-PFV-GVQRPLGFWKKGAFFVVST-------SGHLLLYDPNTQEMRDL 336 (379)
Q Consensus 295 ~i~-~~~-~~~~~~~~~~~~~il~~~~-------~~~l~~yd~~t~~~~~v 336 (379)
+. ... ....-+.+..+|.+++... ...++.||+++++++.+
T Consensus 128 -~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~ 177 (333)
T 2dg1_A 128 -IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI 177 (333)
T ss_dssp -ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred -EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe
Confidence 11 111 1122244555677777654 25799999988777665
No 77
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=78.48 E-value=31 Score=29.48 Aligned_cols=96 Identities=9% Similarity=0.076 Sum_probs=50.3
Q ss_pred cEEEEEECCCceEEEecCCCCCCCCCc-EEE-EECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCC-Ccccc-eEE
Q 039590 233 AVILSFHLGNDVFEEVQEPYIPQSEPT-IIG-VYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFV-GVQRP-LGF 308 (379)
Q Consensus 233 ~~i~~fD~~~e~~~~i~~P~~~~~~~~-~l~-~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~-~~~~~-~~~ 308 (379)
..|..+|+.+.+......... .... .+. .-+|...+.... +..+.||-+.... ....+.... ..... ..+
T Consensus 171 ~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~ 244 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATL--DNTLKLWDYSKGK--CLKTYTGHKNEKYCIFANF 244 (312)
T ss_dssp SCEEEEETTTCCEEEEECCSS--CCCEEEEEECTTSSEEEEEET--TTEEEEEETTTTE--EEEEECSSCCSSSCCCEEE
T ss_pred CcEEEEECCCCceeeEEeccC--CCceEEEEECCCCCEEEEEcC--CCeEEEEECCCCc--EEEEEEecCCceEEEEEEE
Confidence 478889988765432211111 1112 222 235666665555 6789999887632 122232211 11111 122
Q ss_pred e-eCCeEEEEE-eCCEEEEEeCCCCcEE
Q 039590 309 W-KKGAFFVVS-TSGHLLLYDPNTQEMR 334 (379)
Q Consensus 309 ~-~~~~il~~~-~~~~l~~yd~~t~~~~ 334 (379)
. .++.+++.. .++.+.+||+++++..
T Consensus 245 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~ 272 (312)
T 4ery_A 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIV 272 (312)
T ss_dssp ECSSSCEEEECCTTSCEEEEETTTCCEE
T ss_pred EeCCCcEEEEECCCCEEEEEECCCchhh
Confidence 2 345555544 3678999999988754
No 78
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=78.29 E-value=33 Score=29.68 Aligned_cols=203 Identities=7% Similarity=-0.039 Sum_probs=97.9
Q ss_pred eecceEEEecCCCCeEEEEecCCCceec-CCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeE
Q 039590 106 PFDGIFCIHGPTNDRLILCNLETKESRT-LPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAH 184 (379)
Q Consensus 106 s~~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~ 184 (379)
..+..+.+.......+.++|+.|++... ++......... .......++.+++..+.. +.. .... ...
T Consensus 98 ~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l--~~~-~~~~--------~~~ 165 (353)
T 3vgz_A 98 NTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEE-VRPLQPRELVADDATNTV--YIS-GIGK--------ESV 165 (353)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSS-CCCCEEEEEEEETTTTEE--EEE-EESS--------SCE
T ss_pred CCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccc-cCCCCCceEEECCCCCEE--EEE-ecCC--------Cce
Confidence 3344455555544579999999987633 33321111000 000113556777754432 211 1101 123
Q ss_pred EEEEEcCCCccccccccc-CCcceeeeccccEEECceEeeEeecCCCCccEEEEEECCCceEE-EecCCCCC-CCCCcEE
Q 039590 185 VAMYNLRTNSWRDLKSFK-SDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFE-EVQEPYIP-QSEPTII 261 (379)
Q Consensus 185 ~~vyss~~~~W~~~~~~~-~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~-~i~~P~~~-~~~~~~l 261 (379)
+.+++.++++=...- + ....+ ..-.+.-+|...+..... ..|..+|+.+.+.. .+..+... ......+
T Consensus 166 i~~~d~~~~~~~~~~--~~~~~~~---~~~~~s~dg~~l~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 236 (353)
T 3vgz_A 166 IWVVDGGNIKLKTAI--QNTGKMS---TGLALDSEGKRLYTTNAD----GELITIDTADNKILSRKKLLDDGKEHFFINI 236 (353)
T ss_dssp EEEEETTTTEEEEEE--CCCCTTC---CCCEEETTTTEEEEECTT----SEEEEEETTTTEEEEEEECCCSSSCCCEEEE
T ss_pred EEEEcCCCCceEEEe--cCCCCcc---ceEEECCCCCEEEEEcCC----CeEEEEECCCCeEEEEEEcCCCCCCcccceE
Confidence 448887765321111 0 00001 111122255433333322 47889999887654 44543321 1111134
Q ss_pred EE-ECCe-EEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCe-EEEEEe-CCEEEEEeCCCCcEEE
Q 039590 262 GV-YNHS-LCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGA-FFVVST-SGHLLLYDPNTQEMRD 335 (379)
Q Consensus 262 ~~-~~G~-L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~-~~~l~~yd~~t~~~~~ 335 (379)
.. -+|+ |++... ....+.+|-++...-......+. ..-+.+..+|+ +++... ++.+.+||.++++...
T Consensus 237 ~~s~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~ 308 (353)
T 3vgz_A 237 SLDTARQRAFITDS--KAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVK 308 (353)
T ss_dssp EEETTTTEEEEEES--SSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEeC--CCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence 43 3555 544443 35788888776533333333321 12355666776 455443 6899999999887654
No 79
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=78.26 E-value=27 Score=31.84 Aligned_cols=109 Identities=10% Similarity=0.151 Sum_probs=61.1
Q ss_pred ECceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEE-EECCe-EEEEEEcCCCCEEEEEEEcC-CeEE--
Q 039590 217 VDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIG-VYNHS-LCVLLSHNIENYYDIWVMKD-KCWI-- 291 (379)
Q Consensus 217 ~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~-~~~G~-L~l~~~~~~~~~i~iW~l~~-~~W~-- 291 (379)
-+|.|||..... ..|..+|+.+.....+...... .. ++ ..+|. |++.... .. -.||.++. ..|.
T Consensus 140 ~~g~lyv~d~~~----~~I~~id~~~g~~~~~~~~~~~---~~-ia~~~~g~~l~~~d~~--~~-~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 140 GNNTVLAYQRDD----PRVRLISVDDNKVTTVHPGFKG---GK-PAVTKDKQRVYSIGWE--GT-HTVYVYMKASGWAPT 208 (409)
T ss_dssp STTEEEEEETTT----TEEEEEETTTTEEEEEEETCCB---CB-CEECTTSSEEEEEBSS--TT-CEEEEEEGGGTTCEE
T ss_pred CCCCEEEEecCC----CcEEEEECCCCEEEEeeccCCC---Cc-eeEecCCCcEEEEecC--CC-ceEEEEEcCCCceeE
Confidence 478999987643 5899999998777655332111 11 23 23344 4443332 22 15666665 3343
Q ss_pred EEEEECC-CCCcccceEEee-CCeEEEEEeCCEEEEEeCCCCcEEEe
Q 039590 292 KQLSVGP-FVGVQRPLGFWK-KGAFFVVSTSGHLLLYDPNTQEMRDL 336 (379)
Q Consensus 292 ~~~~i~~-~~~~~~~~~~~~-~~~il~~~~~~~l~~yd~~t~~~~~v 336 (379)
....+.. ...-..-+.+.. ++.+|+...++.++.||++++..+.+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 2222222 111123355555 57777755567899999998876655
No 80
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=78.25 E-value=33 Score=29.65 Aligned_cols=205 Identities=10% Similarity=0.029 Sum_probs=99.9
Q ss_pred ecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEE
Q 039590 107 FDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVA 186 (379)
Q Consensus 107 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~ 186 (379)
.+|-+.+.+.....++++||.+++...+..... ....++.+++..+ ++... . ... .....+.
T Consensus 54 ~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---------~~~~~i~~~~dg~---l~v~~-~-~~~----~~~~~i~ 115 (333)
T 2dg1_A 54 RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK---------ANPAAIKIHKDGR---LFVCY-L-GDF----KSTGGIF 115 (333)
T ss_dssp TTSCEEEEETTTCEEEEECTTTCCEEEEEECSS---------SSEEEEEECTTSC---EEEEE-C-TTS----SSCCEEE
T ss_pred CCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCC---------CCcceEEECCCCc---EEEEe-C-CCC----CCCceEE
Confidence 456666554444469999999998776532111 1135666776532 22211 0 100 0012344
Q ss_pred EEEcCCCcccccccccCCcceeeeccccEE--ECceEeeEeecC--CCCccEEEEEECCCceEEEecCCCCCCCCCcEEE
Q 039590 187 MYNLRTNSWRDLKSFKSDHYVMSFWSGSLY--VDGVCYWLSRFR--NNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIG 262 (379)
Q Consensus 187 vyss~~~~W~~~~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~--~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~ 262 (379)
+|+..++.-+.... ...... ....+. -+|.+|...... ......|..+|..+.+...+.-... ....++
T Consensus 116 ~~d~~~~~~~~~~~---~~~~~~-~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~i~ 188 (333)
T 2dg1_A 116 AATENGDNLQDIIE---DLSTAY-CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNIS---VANGIA 188 (333)
T ss_dssp EECTTSCSCEEEEC---SSSSCC-CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEES---SEEEEE
T ss_pred EEeCCCCEEEEEEc---cCccCC-cccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCC---cccceE
Confidence 78777765442210 000000 111222 257766644321 0112479999988766654421100 111333
Q ss_pred E-ECCe-EEEEEEcCCCCEEEEEEEcC--CeEEEE---EEECCCC-CcccceEEeeCCeEEEEEe-CCEEEEEeCCCCcE
Q 039590 263 V-YNHS-LCVLLSHNIENYYDIWVMKD--KCWIKQ---LSVGPFV-GVQRPLGFWKKGAFFVVST-SGHLLLYDPNTQEM 333 (379)
Q Consensus 263 ~-~~G~-L~l~~~~~~~~~i~iW~l~~--~~W~~~---~~i~~~~-~~~~~~~~~~~~~il~~~~-~~~l~~yd~~t~~~ 333 (379)
. -+|+ |++.... ...+.+|-++. ...... ....... ....-+.+..+|.+++... ++.+..||++.+.+
T Consensus 189 ~~~dg~~l~v~~~~--~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~ 266 (333)
T 2dg1_A 189 LSTDEKVLWVTETT--ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPI 266 (333)
T ss_dssp ECTTSSEEEEEEGG--GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEE
T ss_pred ECCCCCEEEEEeCC--CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCCCEE
Confidence 2 3555 6655433 56777787753 222211 1111111 1223355556778877764 57899999977666
Q ss_pred EEeEE
Q 039590 334 RDLGV 338 (379)
Q Consensus 334 ~~v~~ 338 (379)
+.+..
T Consensus 267 ~~~~~ 271 (333)
T 2dg1_A 267 GQILI 271 (333)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 66654
No 81
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=77.67 E-value=12 Score=37.22 Aligned_cols=109 Identities=12% Similarity=-0.004 Sum_probs=54.6
Q ss_pred CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEEE--ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEE
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGV--YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLS 295 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~--~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~ 295 (379)
+|.|||..... ...|..+++....-..+-.. .. ...-.|+. .+|.|+++... ...|...-++... . ...
T Consensus 507 ~g~ly~td~~~---~~~I~~~~~dG~~~~~l~~~-~l-~~PnGlavd~~~~~LY~aD~~--~~~I~~~d~dG~~-~-~~~ 577 (699)
T 1n7d_A 507 HGFMYWTDWGT---PAKIKKGGLNGVDIYSLVTE-NI-QWPNGITLDLLSGRLYWVDSK--LHSISSIDVNGGN-R-KTI 577 (699)
T ss_dssp SSCCEECCCSS---SCCEEBCCSSSCCCCEESCS-SC-SSCCCEEECTTTCCEEEEETT--TTEEEEECSSSSC-C-EEE
T ss_pred CCcEEEcccCC---CCeEEEEeCCCCCeeEEEeC-CC-CCccEEEEeccCCEEEEEecC--CCeEEEEccCCCc-e-EEE
Confidence 68999976432 24688888765433322111 11 11113444 35788887754 4444444333211 1 111
Q ss_pred ECCCCCcccceEEeeC-CeEEEEEe-CCEEEEEeCCCCcEEE
Q 039590 296 VGPFVGVQRPLGFWKK-GAFFVVST-SGHLLLYDPNTQEMRD 335 (379)
Q Consensus 296 i~~~~~~~~~~~~~~~-~~il~~~~-~~~l~~yd~~t~~~~~ 335 (379)
+.....+..|.++.-+ +.+|+... .+.|..+|+.+++..+
T Consensus 578 ~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 578 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp CCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEE
T ss_pred EecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceE
Confidence 1111223455544333 34555543 5689999988776544
No 82
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=77.65 E-value=33 Score=29.45 Aligned_cols=98 Identities=9% Similarity=0.017 Sum_probs=54.1
Q ss_pred cEEEEEECCC-ce--EEEecCCCCCCCCCcEEEEE--CCeEEEEEEcCCCCEEEEEEEcCC--e--EEEEEEECCCCC--
Q 039590 233 AVILSFHLGN-DV--FEEVQEPYIPQSEPTIIGVY--NHSLCVLLSHNIENYYDIWVMKDK--C--WIKQLSVGPFVG-- 301 (379)
Q Consensus 233 ~~i~~fD~~~-e~--~~~i~~P~~~~~~~~~l~~~--~G~L~l~~~~~~~~~i~iW~l~~~--~--W~~~~~i~~~~~-- 301 (379)
..|..+|+.+ .. ......+... ....+... +|.+.+++.. +..+.||.++.. . ......+.....
T Consensus 170 ~~i~i~d~~~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~~l~~~~~--dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (342)
T 1yfq_A 170 SQVQWFRLPLCEDDNGTIEESGLKY--QIRDVALLPKEQEGYACSSI--DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL 245 (342)
T ss_dssp TEEEEEESSCCTTCCCEEEECSCSS--CEEEEEECSGGGCEEEEEET--TSEEEEEECCTTCCSTTCTTCEEEECCCCCT
T ss_pred CeEEEEECCccccccceeeecCCCC--ceeEEEECCCCCCEEEEEec--CCcEEEEEEcCCCcccccccceeeecccccc
Confidence 4899999987 32 3333332221 11134433 5777666665 778999988642 1 222333322111
Q ss_pred -------cccceEEeeCCeEEEEE-eCCEEEEEeCCCCcEE
Q 039590 302 -------VQRPLGFWKKGAFFVVS-TSGHLLLYDPNTQEMR 334 (379)
Q Consensus 302 -------~~~~~~~~~~~~il~~~-~~~~l~~yd~~t~~~~ 334 (379)
-..-+.+..++.+++.. .++.+.+||+++++..
T Consensus 246 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 286 (342)
T 1yfq_A 246 KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286 (342)
T ss_dssp TCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred cccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHh
Confidence 12223445566655554 4778999999987743
No 83
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=76.45 E-value=36 Score=29.17 Aligned_cols=101 Identities=12% Similarity=0.141 Sum_probs=56.1
Q ss_pred cEEEEEECCC-ceEEE-----ecCCCCCCCCCcEEE-EECCe-EEEEEEcCCCCEEEEEEEcC--CeEEEEEEECCCC-C
Q 039590 233 AVILSFHLGN-DVFEE-----VQEPYIPQSEPTIIG-VYNHS-LCVLLSHNIENYYDIWVMKD--KCWIKQLSVGPFV-G 301 (379)
Q Consensus 233 ~~i~~fD~~~-e~~~~-----i~~P~~~~~~~~~l~-~~~G~-L~l~~~~~~~~~i~iW~l~~--~~W~~~~~i~~~~-~ 301 (379)
..|..||+.+ .+... +..+... ....+. .-+|+ |++... ....+.+|.++. ..+.....+...+ .
T Consensus 151 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~pdg~~l~~~~~--~~~~i~~~~~~~~~g~~~~~~~~~~~~~~ 226 (343)
T 1ri6_A 151 DRICLFTVSDDGHLVAQDPAEVTTVEGA--GPRHMVFHPNEQYAYCVNE--LNSSVDVWELKDPHGNIECVQTLDMMPEN 226 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEEEECSTTC--CEEEEEECTTSSEEEEEET--TTTEEEEEESSCTTSCCEEEEEEECSCTT
T ss_pred CEEEEEEecCCCceeeecccccccCCCC--CcceEEECCCCCEEEEEeC--CCCEEEEEEecCCCCcEEEEeeccccCcc
Confidence 4799999887 55542 3333221 111333 23566 444433 367899999964 4444443333211 1
Q ss_pred ---ccc--ceEEeeCCeEEEE-E-eCCEEEEEeCC--CCcEEEeE
Q 039590 302 ---VQR--PLGFWKKGAFFVV-S-TSGHLLLYDPN--TQEMRDLG 337 (379)
Q Consensus 302 ---~~~--~~~~~~~~~il~~-~-~~~~l~~yd~~--t~~~~~v~ 337 (379)
... -+.+..+|+.+++ . .++.+.+||++ +++.+.+.
T Consensus 227 ~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~ 271 (343)
T 1ri6_A 227 FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG 271 (343)
T ss_dssp CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEee
Confidence 112 2556667765554 3 36789999998 56666655
No 84
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=76.45 E-value=58 Score=32.82 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=34.0
Q ss_pred CceEeeEeecCCCCccEEEEEECCCceEEEe-cCCCCCCCCCcEEEEECCeEEEEEEc
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDVFEEV-QEPYIPQSEPTIIGVYNHSLCVLLSH 274 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~l~~~~G~L~l~~~~ 274 (379)
+|.|||..... ..|.++|+....-..+ ..+.. -...+.|+..++.|++....
T Consensus 569 ~~~LYwaD~~~----~~I~~~d~dG~~~~~v~~~~~~-l~~P~glav~~~~lYwtD~~ 621 (791)
T 3m0c_C 569 SGRLYWVDSKL----HSISSIDVNGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDII 621 (791)
T ss_dssp TTEEEEEETTT----TEEEEEETTSCSCEEEEECTTT-TSSEEEEEEETTEEEEEETT
T ss_pred CCeEEEEeCCC----CcEEEEecCCCceEEEecCCCc-cCCCCEEEEeCCEEEEEECC
Confidence 59999987543 6899999976544333 22211 12345777888989887754
No 85
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=76.19 E-value=28 Score=28.90 Aligned_cols=106 Identities=13% Similarity=0.151 Sum_probs=60.0
Q ss_pred CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEEEE-CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEE
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGVY-NHSLCVLLSHNIENYYDIWVMKDKCWIKQLSV 296 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~~-~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i 296 (379)
+|.+|+.... ..|..||..+.....+..+.. .....++.. +|.|++.... ...+.+| +.........
T Consensus 77 ~g~l~v~~~~-----~~i~~~d~~~~~~~~~~~~~~--~~p~~i~~~~~g~l~v~~~~--~~~i~~~--~~~~~~~~~~- 144 (270)
T 1rwi_B 77 AGTVYVTDFN-----NRVVTLAAGSNNQTVLPFDGL--NYPEGLAVDTQGAVYVADRG--NNRVVKL--AAGSKTQTVL- 144 (270)
T ss_dssp TCCEEEEETT-----TEEEEECTTCSCCEECCCCSC--SSEEEEEECTTCCEEEEEGG--GTEEEEE--CTTCCSCEEC-
T ss_pred CCCEEEEcCC-----CEEEEEeCCCceEeeeecCCc--CCCcceEECCCCCEEEEECC--CCEEEEE--ECCCceeEee-
Confidence 5787776642 489999998876655433221 112245543 6887776654 4555555 3321111111
Q ss_pred CCCCCc--ccceEEeeCCeEEEEEe-CCEEEEEeCCCCcEEEe
Q 039590 297 GPFVGV--QRPLGFWKKGAFFVVST-SGHLLLYDPNTQEMRDL 336 (379)
Q Consensus 297 ~~~~~~--~~~~~~~~~~~il~~~~-~~~l~~yd~~t~~~~~v 336 (379)
..... ..-+.+..+|.+++... ++.+..||++++.....
T Consensus 145 -~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~ 186 (270)
T 1rwi_B 145 -PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL 186 (270)
T ss_dssp -CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC
T ss_pred -ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEee
Confidence 11112 23355555677777654 57899999988776543
No 86
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=76.14 E-value=43 Score=29.94 Aligned_cols=178 Identities=8% Similarity=0.050 Sum_probs=88.2
Q ss_pred eEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCcccccc
Q 039590 120 RLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDLK 199 (379)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 199 (379)
.+.|||..+++...+-.... . .....+.+.+. +.+-++.- .+ ..+.+|+..++.-...-
T Consensus 114 ~v~lw~~~~~~~~~~~~~~~--~------~~v~~v~~s~~-~~~l~~~~----~d--------g~i~iwd~~~~~~~~~~ 172 (401)
T 4aez_A 114 NVYVWNADSGSVSALAETDE--S------TYVASVKWSHD-GSFLSVGL----GN--------GLVDIYDVESQTKLRTM 172 (401)
T ss_dssp EEEEEETTTCCEEEEEECCT--T------CCEEEEEECTT-SSEEEEEE----TT--------SCEEEEETTTCCEEEEE
T ss_pred eEEEeeCCCCcEeEeeecCC--C------CCEEEEEECCC-CCEEEEEC----CC--------CeEEEEECcCCeEEEEe
Confidence 59999999998765433321 1 12355666663 33322221 11 12448888765432111
Q ss_pred cccCCcceeeeccccEEECceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCc-EEEEE-CCeEEEEEEcCCC
Q 039590 200 SFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPT-IIGVY-NHSLCVLLSHNIE 277 (379)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~-~l~~~-~G~L~l~~~~~~~ 277 (379)
. .. .. .-.++..+|.+...+... ..|..+|+.+..-....+.... ... .+... +|.+.+++.. +
T Consensus 173 --~-~~-~~--~v~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~--d 238 (401)
T 4aez_A 173 --A-GH-QA--RVGCLSWNRHVLSSGSRS----GAIHHHDVRIANHQIGTLQGHS--SEVCGLAWRSDGLQLASGGN--D 238 (401)
T ss_dssp --C-CC-SS--CEEEEEEETTEEEEEETT----SEEEEEETTSSSCEEEEEECCS--SCEEEEEECTTSSEEEEEET--T
T ss_pred --c-CC-CC--ceEEEEECCCEEEEEcCC----CCEEEEecccCcceeeEEcCCC--CCeeEEEEcCCCCEEEEEeC--C
Confidence 0 01 00 112233455544444332 5888999874332222221111 111 33322 5666666665 6
Q ss_pred CEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCC-eEEEEEe---CCEEEEEeCCCCcEE
Q 039590 278 NYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKG-AFFVVST---SGHLLLYDPNTQEMR 334 (379)
Q Consensus 278 ~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~-~il~~~~---~~~l~~yd~~t~~~~ 334 (379)
..+.||-+... .....+.....-..-+.+..++ .++.... ++.+.+||+++++..
T Consensus 239 ~~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 239 NVVQIWDARSS--IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV 297 (401)
T ss_dssp SCEEEEETTCS--SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE
T ss_pred CeEEEccCCCC--CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE
Confidence 78999988752 1222333222222334444434 4555443 788999999887654
No 87
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=75.76 E-value=40 Score=29.35 Aligned_cols=197 Identities=10% Similarity=0.020 Sum_probs=88.4
Q ss_pred cceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEE
Q 039590 108 DGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAM 187 (379)
Q Consensus 108 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~v 187 (379)
+|-+++.+.....+.|||..++++..+-...... .....+.+.+. +.+-+..- .+ ..+.+
T Consensus 19 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~-------~~v~~~~~~~~-~~~l~~~~----~d--------g~i~v 78 (372)
T 1k8k_C 19 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHN-------GQVTGVDWAPD-SNRIVTCG----TD--------RNAYV 78 (372)
T ss_dssp TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCS-------SCEEEEEEETT-TTEEEEEE----TT--------SCEEE
T ss_pred CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCC-------CcccEEEEeCC-CCEEEEEc----CC--------CeEEE
Confidence 4444444333456999999988633222211111 12355666663 33322221 11 12448
Q ss_pred EEcCCCcccccccccCCcceeeeccccEEE--CceEeeEeecCCCCccEEEEEECCCce-EEE-ecCCCCCCCCCcEEEE
Q 039590 188 YNLRTNSWRDLKSFKSDHYVMSFWSGSLYV--DGVCYWLSRFRNNDHAVILSFHLGNDV-FEE-VQEPYIPQSEPTIIGV 263 (379)
Q Consensus 188 yss~~~~W~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~i~~fD~~~e~-~~~-i~~P~~~~~~~~~l~~ 263 (379)
|+..++.+.....+. .. ... -.++.+ +|.....+... ..|..+|+.+.. +.. ..........-..+..
T Consensus 79 wd~~~~~~~~~~~~~-~~-~~~--v~~~~~~~~~~~l~~~~~d----~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 150 (372)
T 1k8k_C 79 WTLKGRTWKPTLVIL-RI-NRA--ARCVRWAPNEKKFAVGSGS----RVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 150 (372)
T ss_dssp EEEETTEEEEEEECC-CC-SSC--EEEEEECTTSSEEEEEETT----SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred EECCCCeeeeeEEee-cC-CCc--eeEEEECCCCCEEEEEeCC----CEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence 888877665432100 00 000 011111 34333333322 346666665543 221 1111111111113332
Q ss_pred -ECCeEEEEEEcCCCCEEEEEEEcC---------CeE-------EEEEEECCCCCcccceEEeeCCeEEEE-EeCCEEEE
Q 039590 264 -YNHSLCVLLSHNIENYYDIWVMKD---------KCW-------IKQLSVGPFVGVQRPLGFWKKGAFFVV-STSGHLLL 325 (379)
Q Consensus 264 -~~G~L~l~~~~~~~~~i~iW~l~~---------~~W-------~~~~~i~~~~~~~~~~~~~~~~~il~~-~~~~~l~~ 325 (379)
-+|.+.+.+.. +..+.+|-+.. ..| ..+..+........-+.+..++..++. ..++.+.+
T Consensus 151 ~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 228 (372)
T 1k8k_C 151 HPNSVLLAAGSC--DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL 228 (372)
T ss_dssp CTTSSEEEEEET--TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred cCCCCEEEEEcC--CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEE
Confidence 25666666655 67899998641 111 222233222211223444456655554 44778999
Q ss_pred EeCCCCcEE
Q 039590 326 YDPNTQEMR 334 (379)
Q Consensus 326 yd~~t~~~~ 334 (379)
||+++++..
T Consensus 229 ~d~~~~~~~ 237 (372)
T 1k8k_C 229 ADADKKMAV 237 (372)
T ss_dssp EEGGGTTEE
T ss_pred EECCCCcee
Confidence 999877643
No 88
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=75.64 E-value=38 Score=29.03 Aligned_cols=103 Identities=11% Similarity=0.111 Sum_probs=59.2
Q ss_pred cEEEEEECCC--ceEE---Eec-CCCCCCC-CCc-EEEE-ECCeEEEEEEcCCCCEEEEEEEcC--CeEEEEEEECCCCC
Q 039590 233 AVILSFHLGN--DVFE---EVQ-EPYIPQS-EPT-IIGV-YNHSLCVLLSHNIENYYDIWVMKD--KCWIKQLSVGPFVG 301 (379)
Q Consensus 233 ~~i~~fD~~~--e~~~---~i~-~P~~~~~-~~~-~l~~-~~G~L~l~~~~~~~~~i~iW~l~~--~~W~~~~~i~~~~~ 301 (379)
..|..+|+.. .++. .+. +|..... ... .+.. -+|+..++... ....+.+|-++. ..+..+..+.....
T Consensus 200 ~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~-~~~~i~v~d~~~~~~~~~~~~~~~~~~~ 278 (343)
T 1ri6_A 200 SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR-TASLITVFSVSEDGSVLSKEGFQPTETQ 278 (343)
T ss_dssp TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET-TTTEEEEEEECTTSCCEEEEEEEECSSS
T ss_pred CEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec-CCCEEEEEEEcCCCCceEEeeeecCCCc
Confidence 4788888843 4433 232 3433211 111 3443 34654343333 367899999984 45666666653322
Q ss_pred cccceEEeeCCeEEEEEe--CCEEEEE--eCCCCcEEEeE
Q 039590 302 VQRPLGFWKKGAFFVVST--SGHLLLY--DPNTQEMRDLG 337 (379)
Q Consensus 302 ~~~~~~~~~~~~il~~~~--~~~l~~y--d~~t~~~~~v~ 337 (379)
..-+.+..+|+.++... ++.+.+| |.++++++.+.
T Consensus 279 -~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 317 (343)
T 1ri6_A 279 -PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKG 317 (343)
T ss_dssp -CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEE
T ss_pred -cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcc
Confidence 34466666777555543 5677777 77788888766
No 89
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=75.61 E-value=43 Score=29.70 Aligned_cols=194 Identities=10% Similarity=0.052 Sum_probs=96.8
Q ss_pred eecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEE
Q 039590 106 PFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHV 185 (379)
Q Consensus 106 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~ 185 (379)
..+|.|...+....+++.+++.++....+....... ..++.+|+..+...+.-. . ....+
T Consensus 82 ~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~---------p~glavd~~~g~ly~~d~----~------~~~I~- 141 (349)
T 3v64_C 82 HRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLES---------PGGLAVDWVHDKLYWTDS----G------TSRIE- 141 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSC---------CCEEEEETTTTEEEEEET----T------TTEEE-
T ss_pred ccccEEEEEeccCCceEEEecCCCCceEEEeCCCCC---------ccEEEEecCCCeEEEEcC----C------CCeEE-
Confidence 456777777655567888888877544432221111 256777765553222111 0 11333
Q ss_pred EEEEcCCCcccccccccCCcceeeeccccEEE---CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEE
Q 039590 186 AMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYV---DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIG 262 (379)
Q Consensus 186 ~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~ 262 (379)
+++..+..-+.+.. ... . ...++.+ +|.+||..... ...|..+|+....-..+- .... ...-.|+
T Consensus 142 -~~~~dG~~~~~l~~--~~l---~-~P~~iavdp~~g~ly~td~~~---~~~I~r~~~dG~~~~~~~-~~~~-~~PnGla 209 (349)
T 3v64_C 142 -VANLDGAHRKVLLW--QSL---E-KPRAIALHPMEGTIYWTDWGN---TPRIEASSMDGSGRRIIA-DTHL-FWPNGLT 209 (349)
T ss_dssp -EEETTSCSCEEEEC--TTC---S-CEEEEEEETTTTEEEEEECSS---SCEEEEEETTSCSCEESC-CSSC-SCEEEEE
T ss_pred -EEcCCCCceEEEEe--CCC---C-CcceEEEecCcCeEEEeccCC---CCEEEEEeCCCCCcEEEE-ECCC-CCcceEE
Confidence 77766543222220 011 0 1123333 68999987543 358999998765433321 1111 1122455
Q ss_pred E--ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEe-eCCeEEEEEe-CCEEEEEeCCCCc-EEEeE
Q 039590 263 V--YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFW-KKGAFFVVST-SGHLLLYDPNTQE-MRDLG 337 (379)
Q Consensus 263 ~--~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~-~~~~il~~~~-~~~l~~yd~~t~~-~~~v~ 337 (379)
. .+|.|+++... ...|...-++. .-.+. .+. ..+..|.++. .++.+|+... .+.+..+|..+++ .+.+.
T Consensus 210 ~d~~~~~lY~aD~~--~~~I~~~~~dG-~~~~~-~~~--~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 210 IDYAGRRMYWVDAK--HHVIERANLDG-SHRKA-VIS--QGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EETTTTEEEEEETT--TTEEEEEETTS-CSCEE-EEC--SSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EeCCCCEEEEEECC--CCEEEEEeCCC-CceEE-EEe--CCCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 4 37888888755 44454444443 11111 121 1234565443 3455666544 5688888854544 44443
No 90
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=75.27 E-value=67 Score=31.75 Aligned_cols=95 Identities=8% Similarity=0.122 Sum_probs=47.9
Q ss_pred cEEEEEECCCc-eEEE-ecCCCCCCCCCcEEEEE--CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEE
Q 039590 233 AVILSFHLGND-VFEE-VQEPYIPQSEPTIIGVY--NHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGF 308 (379)
Q Consensus 233 ~~i~~fD~~~e-~~~~-i~~P~~~~~~~~~l~~~--~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~ 308 (379)
..|..+|+.+. .... +..... .-..+... +|.+.+++.. +..+.+|-+....-....... ...-...+.+
T Consensus 119 g~i~vw~~~~~~~~~~~~~~~~~---~v~~~~~~p~~~~~l~~~~~--dg~v~vwd~~~~~~~~~~~~~-~~~~v~~~~~ 192 (814)
T 3mkq_A 119 LTVKLWNWENNWALEQTFEGHEH---FVMCVAFNPKDPSTFASGCL--DRTVKVWSLGQSTPNFTLTTG-QERGVNYVDY 192 (814)
T ss_dssp SEEEEEEGGGTSEEEEEEECCSS---CEEEEEEETTEEEEEEEEET--TSEEEEEETTCSSCSEEEECC-CTTCCCEEEE
T ss_pred CEEEEEECCCCceEEEEEcCCCC---cEEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCcceeEEecC-CCCCEEEEEE
Confidence 47888888765 2222 221111 11134433 4556655555 678999988752111111111 1111122333
Q ss_pred ee--CCeEEEEE-eCCEEEEEeCCCCcE
Q 039590 309 WK--KGAFFVVS-TSGHLLLYDPNTQEM 333 (379)
Q Consensus 309 ~~--~~~il~~~-~~~~l~~yd~~t~~~ 333 (379)
.. ++..++.. .++.+..||+++++.
T Consensus 193 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 220 (814)
T 3mkq_A 193 YPLPDKPYMITASDDLTIKIWDYQTKSC 220 (814)
T ss_dssp CCSTTCCEEEEECTTSEEEEEETTTTEE
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 33 55555544 477899999888764
No 91
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=75.06 E-value=38 Score=28.74 Aligned_cols=106 Identities=8% Similarity=-0.063 Sum_probs=56.1
Q ss_pred CceEeeEeecCCCCccEEEEEECC-CceE-EEecCCCCCCCCCcEEE-EECCeEEEEEEcCCCCEEEEEEEcCCeEEEEE
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLG-NDVF-EEVQEPYIPQSEPTIIG-VYNHSLCVLLSHNIENYYDIWVMKDKCWIKQL 294 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~-~e~~-~~i~~P~~~~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~ 294 (379)
+|.+++.... ...|..||+. +.+. .....-.........++ ..+|.|.+.. ...+.+|-.+ ..-. .
T Consensus 182 dg~~lv~~~~----~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~----~~~v~~~~~~-g~~~--~ 250 (296)
T 3e5z_A 182 SGNLLVSDTG----DNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA----GDGVHVLTPD-GDEL--G 250 (296)
T ss_dssp TSCEEEEETT----TTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE----TTEEEEECTT-SCEE--E
T ss_pred CCCEEEEeCC----CCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc----CCeEEEECCC-CCEE--E
Confidence 5766644332 3589999986 4444 11110011111111344 3578887766 3456666544 3222 2
Q ss_pred EECCCCCcccceEEe-eCCeEEEEEeCCEEEEEeCCCCcEEE
Q 039590 295 SVGPFVGVQRPLGFW-KKGAFFVVSTSGHLLLYDPNTQEMRD 335 (379)
Q Consensus 295 ~i~~~~~~~~~~~~~-~~~~il~~~~~~~l~~yd~~t~~~~~ 335 (379)
.+..... ..-+.+. .+++.+++...+.++.++++++++++
T Consensus 251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 251 RVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGLEH 291 (296)
T ss_dssp EEECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCBCCC
T ss_pred EEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEcccccccc
Confidence 2322222 2223342 45566666677899999999998765
No 92
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=74.89 E-value=44 Score=29.43 Aligned_cols=68 Identities=12% Similarity=0.084 Sum_probs=36.3
Q ss_pred CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEE--ECCC--CCcccceEEeeCCeEEEEEeCCEEEEEeCCCCcEE
Q 039590 265 NHSLCVLLSHNIENYYDIWVMKDKCWIKQLS--VGPF--VGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMR 334 (379)
Q Consensus 265 ~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~--i~~~--~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~ 334 (379)
+|...+++.. +..+.+|-+....-..... .... ............+.+++...++.+.+||+.+++..
T Consensus 256 ~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 327 (408)
T 4a11_B 256 DGLHLLTVGT--DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI 327 (408)
T ss_dssp TSSEEEEEET--TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE
T ss_pred CCCEEEEecC--CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce
Confidence 5666666655 6789999988621111100 0000 01111111122346677777889999999887644
No 93
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=72.12 E-value=49 Score=28.70 Aligned_cols=74 Identities=16% Similarity=0.119 Sum_probs=47.5
Q ss_pred EECCe-EEEEEEcCCCCEEEEEEEcC-CeEEEEEEECCCCCcccceEEeeCCeEEEEEe--CCEEEEE--eCCCCcEEEe
Q 039590 263 VYNHS-LCVLLSHNIENYYDIWVMKD-KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST--SGHLLLY--DPNTQEMRDL 336 (379)
Q Consensus 263 ~~~G~-L~l~~~~~~~~~i~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~--~~~l~~y--d~~t~~~~~v 336 (379)
.-+|+ |++.... ...+.+|.++. ..+..+..+........-+.+..+|+.++... ++.+.+| |.++++++.+
T Consensus 248 spdG~~l~v~~~~--~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~ 325 (347)
T 3hfq_A 248 SHDGHFLYVSNRG--YNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLL 325 (347)
T ss_dssp CTTSCEEEEEEET--TTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred CCCCCEEEEEeCC--CCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEec
Confidence 34676 5555544 67899999975 45555555553222234466677787555443 4677777 8889999887
Q ss_pred EE
Q 039590 337 GV 338 (379)
Q Consensus 337 ~~ 338 (379)
.-
T Consensus 326 ~~ 327 (347)
T 3hfq_A 326 QK 327 (347)
T ss_dssp EE
T ss_pred cc
Confidence 73
No 94
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=71.67 E-value=63 Score=32.10 Aligned_cols=97 Identities=9% Similarity=0.117 Sum_probs=59.1
Q ss_pred cEEEEEECCCceEEEec-CCCCCCCCCcEEEE-EC--CeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEE
Q 039590 233 AVILSFHLGNDVFEEVQ-EPYIPQSEPTIIGV-YN--HSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGF 308 (379)
Q Consensus 233 ~~i~~fD~~~e~~~~i~-~P~~~~~~~~~l~~-~~--G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~ 308 (379)
..|..+|+.++++..+. +.... ..-..+.. .+ |.+.+.+.. +..+.||-+....|.....+.....-..-+.+
T Consensus 31 g~I~vwd~~~~~~~~~~~l~~h~-~~V~~l~~s~~~~~~~l~s~s~--Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~ 107 (753)
T 3jro_A 31 KTIKIFEVEGETHKLIDTLTGHE-GPVWRVDWAHPKFGTILASCSY--DGKVLIWKEENGRWSQIAVHAVHSASVNSVQW 107 (753)
T ss_dssp TEEEEEEEETTEEEEEEEECCCS-SCEEEEEECCTTSCSEEEEEET--TSCEEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred CcEEEEecCCCCCccceeccCCc-CceEEEEecCCCCCCEEEEEeC--CCeEEEEECCCCcccccccccCCCCCeEEEEE
Confidence 47888888766665543 22111 11113433 23 666666666 67899999988777777766544332333444
Q ss_pred eeC--CeEEEEE-eCCEEEEEeCCCCc
Q 039590 309 WKK--GAFFVVS-TSGHLLLYDPNTQE 332 (379)
Q Consensus 309 ~~~--~~il~~~-~~~~l~~yd~~t~~ 332 (379)
..+ +.+++.. .++.+.+||++++.
T Consensus 108 sp~~~~~~l~sgs~dg~I~vwdl~~~~ 134 (753)
T 3jro_A 108 APHEYGPLLLVASSDGKVSVVEFKENG 134 (753)
T ss_dssp CCGGGCSEEEEEETTSEEEEEECCSSS
T ss_pred CCCCCCCEEEEEeCCCcEEEEEeecCC
Confidence 444 5555554 47899999998873
No 95
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=71.63 E-value=48 Score=28.49 Aligned_cols=54 Identities=11% Similarity=0.308 Sum_probs=32.0
Q ss_pred CCEEEEEEEcC-CeEEEEEEECCCCCcccceEEeeCC----eEEEE-EeCCEEEEEeCCC
Q 039590 277 ENYYDIWVMKD-KCWIKQLSVGPFVGVQRPLGFWKKG----AFFVV-STSGHLLLYDPNT 330 (379)
Q Consensus 277 ~~~i~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~----~il~~-~~~~~l~~yd~~t 330 (379)
+..+.||-+.. ..|.....+........-+.+..++ .++.. ..++.+.+||+++
T Consensus 188 D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 188 DNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp TSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred CCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 67899999875 5677665554322212223333332 34443 4478899999876
No 96
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=71.50 E-value=47 Score=28.26 Aligned_cols=196 Identities=11% Similarity=0.075 Sum_probs=93.6
Q ss_pred eecceEEEecCCCCeEEEEecCCCceec-CCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeE
Q 039590 106 PFDGIFCIHGPTNDRLILCNLETKESRT-LPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAH 184 (379)
Q Consensus 106 s~~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~ 184 (379)
+.+|-+++.+. ...+.|||..+++... +......... .....+.+.+.. .+-++.- . ...
T Consensus 60 ~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~-~~l~~~~----~--------d~~ 120 (337)
T 1gxr_A 60 SNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRD-----NYIRSCKLLPDG-CTLIVGG----E--------AST 120 (337)
T ss_dssp CSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTT-----SBEEEEEECTTS-SEEEEEE----S--------SSE
T ss_pred ecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCC-----CcEEEEEEcCCC-CEEEEEc----C--------CCc
Confidence 44555555543 4579999998875322 1111100111 124556666632 3322221 1 123
Q ss_pred EEEEEcCCCcccccccccCCcceeeeccccEEE--CceEeeEeecCCCCccEEEEEECCCceEE-EecCCCCCCCCCcEE
Q 039590 185 VAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYV--DGVCYWLSRFRNNDHAVILSFHLGNDVFE-EVQEPYIPQSEPTII 261 (379)
Q Consensus 185 ~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~i~~fD~~~e~~~-~i~~P~~~~~~~~~l 261 (379)
+.+|+.+++.......+...... -..+.+ +|.....+... ..|..+|+.+.+.. .+..... ....+
T Consensus 121 i~~~d~~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~~d----g~v~~~d~~~~~~~~~~~~~~~---~i~~~ 189 (337)
T 1gxr_A 121 LSIWDLAAPTPRIKAELTSSAPA----CYALAISPDSKVCFSCCSD----GNIAVWDLHNQTLVRQFQGHTD---GASCI 189 (337)
T ss_dssp EEEEECCCC--EEEEEEECSSSC----EEEEEECTTSSEEEEEETT----SCEEEEETTTTEEEEEECCCSS---CEEEE
T ss_pred EEEEECCCCCcceeeecccCCCc----eEEEEECCCCCEEEEEeCC----CcEEEEeCCCCceeeeeecccC---ceEEE
Confidence 44899888765433311100000 011111 44444433332 36888998876543 2322211 11133
Q ss_pred EE-ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEEEE-eCCEEEEEeCCCCcEEEe
Q 039590 262 GV-YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVS-TSGHLLLYDPNTQEMRDL 336 (379)
Q Consensus 262 ~~-~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~-~~~~l~~yd~~t~~~~~v 336 (379)
.. -+|...+++.. +..+.+|-+.... ....+..... ..-+.+..++..++.. .++.+..||+++++...+
T Consensus 190 ~~~~~~~~l~~~~~--dg~i~~~d~~~~~--~~~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 261 (337)
T 1gxr_A 190 DISNDGTKLWTGGL--DNTVRSWDLREGR--QLQQHDFTSQ-IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261 (337)
T ss_dssp EECTTSSEEEEEET--TSEEEEEETTTTE--EEEEEECSSC-EEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE
T ss_pred EECCCCCEEEEEec--CCcEEEEECCCCc--eEeeecCCCc-eEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE
Confidence 32 25666666655 6789999887632 1222221111 2223444566665554 477899999998876544
No 97
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=71.46 E-value=47 Score=28.22 Aligned_cols=97 Identities=20% Similarity=0.198 Sum_probs=56.0
Q ss_pred cEEEEEECCCc--eEEEec-CCCCCCCCCcEEEEE---CCeEEEEEEcCCCCEEEEEEEcC-------CeEEEEEEECCC
Q 039590 233 AVILSFHLGND--VFEEVQ-EPYIPQSEPTIIGVY---NHSLCVLLSHNIENYYDIWVMKD-------KCWIKQLSVGPF 299 (379)
Q Consensus 233 ~~i~~fD~~~e--~~~~i~-~P~~~~~~~~~l~~~---~G~L~l~~~~~~~~~i~iW~l~~-------~~W~~~~~i~~~ 299 (379)
..|..+|+.++ .+..+. +.... ..-..+... +|.+.+.+.. +..+.||-++. ..|.....+...
T Consensus 33 g~i~iw~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~d~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 109 (351)
T 3f3f_A 33 QHIKVFKLDKDTSNWELSDSWRAHD-SSIVAIDWASPEYGRIIASASY--DKTVKLWEEDPDQEECSGRRWNKLCTLNDS 109 (351)
T ss_dssp SEEEEEEECSSSCCEEEEEEEECCS-SCEEEEEECCGGGCSEEEEEET--TSCEEEEEECTTSCTTSSCSEEEEEEECCC
T ss_pred CeEEEEECCCCCCcceecceeccCC-CcEEEEEEcCCCCCCEEEEEcC--CCeEEEEecCCCcccccccCcceeeeeccc
Confidence 36777777654 223221 11111 111134433 3777776666 67899999976 356666666544
Q ss_pred CCcccceEEeeC--CeEEEE-EeCCEEEEEeCCCCc
Q 039590 300 VGVQRPLGFWKK--GAFFVV-STSGHLLLYDPNTQE 332 (379)
Q Consensus 300 ~~~~~~~~~~~~--~~il~~-~~~~~l~~yd~~t~~ 332 (379)
..-..-+.+..+ +..++. ..++.+.+||+++++
T Consensus 110 ~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 110 KGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS 145 (351)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT
T ss_pred CCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH
Confidence 332333445555 665555 457899999998765
No 98
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=71.39 E-value=51 Score=28.66 Aligned_cols=199 Identities=11% Similarity=-0.039 Sum_probs=94.6
Q ss_pred ecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEE
Q 039590 107 FDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVA 186 (379)
Q Consensus 107 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~ 186 (379)
.+|.+...+.....++++||.+++...++.+. ...++.+++.. .+ ++.. .. . +.
T Consensus 59 ~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~-----------~v~~i~~~~dg-~l-~v~~-----~~------g--l~ 112 (326)
T 2ghs_A 59 ASGTAWWFNILERELHELHLASGRKTVHALPF-----------MGSALAKISDS-KQ-LIAS-----DD------G--LF 112 (326)
T ss_dssp TTTEEEEEEGGGTEEEEEETTTTEEEEEECSS-----------CEEEEEEEETT-EE-EEEE-----TT------E--EE
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEEEECCC-----------cceEEEEeCCC-eE-EEEE-----CC------C--EE
Confidence 34555555433446999999998766543211 12455666542 22 2211 11 2 44
Q ss_pred EEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecC--CCCccEEEEEECCCceEEEecCCCCCCCCCcEEEE-
Q 039590 187 MYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFR--NNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGV- 263 (379)
Q Consensus 187 vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~--~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~- 263 (379)
+|+..++..+.+...+...+......-.+.-+|.+|...... ......|..+| +.+...+.-... ....++.
T Consensus 113 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~---~~~~i~~s 187 (326)
T 2ghs_A 113 LRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADIS---IPNSICFS 187 (326)
T ss_dssp EEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEES---SEEEEEEC
T ss_pred EEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCc---ccCCeEEc
Confidence 888888777655411111100111111122267765433221 01235789999 455544321100 1113333
Q ss_pred ECCe-EEEEEEcCCCCEEEEEEEc--CC-eEE--E-EEEECCCCCcccceEEeeCCeEEEEEe-CCEEEEEeCCCCcEEE
Q 039590 264 YNHS-LCVLLSHNIENYYDIWVMK--DK-CWI--K-QLSVGPFVGVQRPLGFWKKGAFFVVST-SGHLLLYDPNTQEMRD 335 (379)
Q Consensus 264 ~~G~-L~l~~~~~~~~~i~iW~l~--~~-~W~--~-~~~i~~~~~~~~~~~~~~~~~il~~~~-~~~l~~yd~~t~~~~~ 335 (379)
-+|+ |++.... ...+.+|-++ .. ... + ...+........-+.+..+|.+++... .+.+..||++.+..+.
T Consensus 188 ~dg~~lyv~~~~--~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~ 265 (326)
T 2ghs_A 188 PDGTTGYFVDTK--VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIAR 265 (326)
T ss_dssp TTSCEEEEEETT--TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEE
T ss_pred CCCCEEEEEECC--CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEE
Confidence 2554 5554432 4566666554 12 211 1 112221112222344455677777654 5789999997666666
Q ss_pred eEE
Q 039590 336 LGV 338 (379)
Q Consensus 336 v~~ 338 (379)
+..
T Consensus 266 i~~ 268 (326)
T 2ghs_A 266 YEV 268 (326)
T ss_dssp EEC
T ss_pred EEC
Confidence 654
No 99
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=71.10 E-value=47 Score=28.07 Aligned_cols=27 Identities=7% Similarity=0.126 Sum_probs=19.3
Q ss_pred eecceEEEecCCCCeEEEEecCCCceecC
Q 039590 106 PFDGIFCIHGPTNDRLILCNLETKESRTL 134 (379)
Q Consensus 106 s~~GLl~~~~~~~~~~~V~NP~T~~~~~L 134 (379)
|.+|+|....+ +.+.|||..|++...+
T Consensus 34 S~~~~lAvg~D--~tV~iWd~~tg~~~~~ 60 (318)
T 4ggc_A 34 SSGNVLAVALD--NSVYLWSASSGDILQL 60 (318)
T ss_dssp CTTSEEEEEET--TEEEEEETTTCCEEEE
T ss_pred CCCCEEEEEeC--CEEEEEECCCCCEEEE
Confidence 56776655432 3599999999987654
No 100
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=69.94 E-value=54 Score=28.35 Aligned_cols=96 Identities=15% Similarity=0.212 Sum_probs=53.3
Q ss_pred cEEEEEECCCceEE-EecCCCCCCCCCcEEEE-ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEee
Q 039590 233 AVILSFHLGNDVFE-EVQEPYIPQSEPTIIGV-YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWK 310 (379)
Q Consensus 233 ~~i~~fD~~~e~~~-~i~~P~~~~~~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~ 310 (379)
..|..+|+.+.+.. .+...... -..+.. -+|.+.+.+.. +..+.||-+.... ....+........-+.+..
T Consensus 186 g~i~iwd~~~~~~~~~~~~h~~~---v~~l~~spd~~~l~s~s~--dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~sp 258 (321)
T 3ow8_A 186 GIINIFDIATGKLLHTLEGHAMP---IRSLTFSPDSQLLVTASD--DGYIKIYDVQHAN--LAGTLSGHASWVLNVAFCP 258 (321)
T ss_dssp SCEEEEETTTTEEEEEECCCSSC---CCEEEECTTSCEEEEECT--TSCEEEEETTTCC--EEEEECCCSSCEEEEEECT
T ss_pred CeEEEEECCCCcEEEEEcccCCc---eeEEEEcCCCCEEEEEcC--CCeEEEEECCCcc--eeEEEcCCCCceEEEEECC
Confidence 46888898876542 23322111 113443 35666655554 6789999887622 2233332222122344555
Q ss_pred CCeEEEEE-eCCEEEEEeCCCCcEEE
Q 039590 311 KGAFFVVS-TSGHLLLYDPNTQEMRD 335 (379)
Q Consensus 311 ~~~il~~~-~~~~l~~yd~~t~~~~~ 335 (379)
++..++.. .++.+.+||+++++...
T Consensus 259 ~~~~l~s~s~D~~v~iwd~~~~~~~~ 284 (321)
T 3ow8_A 259 DDTHFVSSSSDKSVKVWDVGTRTCVH 284 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred CCCEEEEEeCCCcEEEEeCCCCEEEE
Confidence 66655554 47789999999876543
No 101
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=69.78 E-value=65 Score=29.20 Aligned_cols=110 Identities=13% Similarity=-0.008 Sum_probs=58.3
Q ss_pred CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEEEE--CCeEEEEEEcCCCCEEEEEEEcC-CeEEEEE
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGVY--NHSLCVLLSHNIENYYDIWVMKD-KCWIKQL 294 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~~--~G~L~l~~~~~~~~~i~iW~l~~-~~W~~~~ 294 (379)
+|.|||..... ...|..+|+....-..+-. ... ..+..|+.. +|.|+++... ...|...-++. ...+.
T Consensus 213 ~g~ly~td~~~---~~~I~~~~~dG~~~~~~~~-~~l-~~P~glavd~~~~~lY~aD~~--~~~I~~~d~dG~~~~~~-- 283 (400)
T 3p5b_L 213 HGFMYWTDWGT---PAKIKKGGLNGVDIYSLVT-ENI-QWPNGITLDLLSGRLYWVDSK--LHSISSIDVNGGNRKTI-- 283 (400)
T ss_dssp TTEEEEEECSS---SCCEEEEETTSCSCEEEEC-SSC-SCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCCCEEE--
T ss_pred cCeEEEEeCCC---CCEEEEEeCCCCccEEEEE-CCC-CceEEEEEEeCCCEEEEEECC--CCEEEEEeCCCCccEEE--
Confidence 68999987542 2479999987644333211 111 122255544 6788888654 34444433332 22111
Q ss_pred EECCCCCcccceEEeeCC-eEEEEEe-CCEEEEEeCCCCc-EEEeE
Q 039590 295 SVGPFVGVQRPLGFWKKG-AFFVVST-SGHLLLYDPNTQE-MRDLG 337 (379)
Q Consensus 295 ~i~~~~~~~~~~~~~~~~-~il~~~~-~~~l~~yd~~t~~-~~~v~ 337 (379)
+.....+..|.++.-.+ .+|.... .+.+..+|..+++ .+.+.
T Consensus 284 -~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 284 -LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp -EECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred -EeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 11112345676665444 4555543 5678899966654 33443
No 102
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=69.63 E-value=87 Score=30.62 Aligned_cols=189 Identities=13% Similarity=0.025 Sum_probs=95.9
Q ss_pred eEEEEecCCCcee--cCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCcccc
Q 039590 120 RLILCNLETKESR--TLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRD 197 (379)
Q Consensus 120 ~~~V~NP~T~~~~--~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~ 197 (379)
++++++.-|++.. .+-..+... ....+..+.++. .|-++.... . ....++++.+..++.|+.
T Consensus 203 ~v~~~~l~t~~~~~~lv~~~~~~~-------~~~~~~~~SpDG-~~l~~~~~~--~------~~~~~l~~~~~~~~~~~~ 266 (695)
T 2bkl_A 203 TIRYHTLGTEPSKDTVVHERTGDP-------TTFLQSDLSRDG-KYLFVYILR--G------WSENDVYWKRPGEKDFRL 266 (695)
T ss_dssp EEEEEETTSCGGGCEEEECCCCCT-------TCEEEEEECTTS-CCEEEEEEE--T------TTEEEEEEECTTCSSCEE
T ss_pred EEEEEECCCCchhceEEEecCCCC-------EEEEEEEECCCC-CEEEEEEeC--C------CCceEEEEEcCCCCceEE
Confidence 5899998887632 222111100 112445555543 454444321 1 014465566666677777
Q ss_pred cccccCCcceeeeccccEEECceEeeEeecCCCCccEEEEEECCCce---EEEecCCCCCCCCCc-EEEEECCeEEEEEE
Q 039590 198 LKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDV---FEEVQEPYIPQSEPT-IIGVYNHSLCVLLS 273 (379)
Q Consensus 198 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~---~~~i~~P~~~~~~~~-~l~~~~G~L~l~~~ 273 (379)
+.. .. ......+..+|.+|..+... .....|..+|+.+.. |+.+-.+... ... .+...+|.|.+...
T Consensus 267 l~~---~~---~~~~~~~~~~g~l~~~s~~~-~~~~~l~~~d~~~~~~~~~~~l~~~~~~--~~l~~~~~~~~~lv~~~~ 337 (695)
T 2bkl_A 267 LVK---GV---GAKYEVHAWKDRFYVLTDEG-APRQRVFEVDPAKPARASWKEIVPEDSS--ASLLSVSIVGGHLSLEYL 337 (695)
T ss_dssp EEE---CS---SCCEEEEEETTEEEEEECTT-CTTCEEEEEBTTBCSGGGCEEEECCCSS--CEEEEEEEETTEEEEEEE
T ss_pred eec---CC---CceEEEEecCCcEEEEECCC-CCCCEEEEEeCCCCCccCCeEEecCCCC--CeEEEEEEECCEEEEEEE
Confidence 651 11 11112233566666654321 234689999987644 6655433211 111 33445888877776
Q ss_pred cCCCCEEEEEEEcC-CeEEEEEEECCC-CCcccceEEeeCC-eEEEEEe----CCEEEEEeCCCCcEEEeE
Q 039590 274 HNIENYYDIWVMKD-KCWIKQLSVGPF-VGVQRPLGFWKKG-AFFVVST----SGHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 274 ~~~~~~i~iW~l~~-~~W~~~~~i~~~-~~~~~~~~~~~~~-~il~~~~----~~~l~~yd~~t~~~~~v~ 337 (379)
. .....||+++- .. ....+... ......+.+..++ .+++... ...++.||+++++.+.+.
T Consensus 338 ~--dg~~~l~~~~~~g~--~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 338 K--DATSEVRVATLKGK--PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA 404 (695)
T ss_dssp E--TTEEEEEEEETTCC--EEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred E--CCEEEEEEEeCCCC--eeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 6 56788888873 22 22333321 1111112222344 4544433 357999999998876654
No 103
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=69.37 E-value=52 Score=27.95 Aligned_cols=189 Identities=11% Similarity=0.019 Sum_probs=88.2
Q ss_pred ecceEEEecCCCCeEEEEecCCCceec-CCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEE
Q 039590 107 FDGIFCIHGPTNDRLILCNLETKESRT-LPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHV 185 (379)
Q Consensus 107 ~~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~ 185 (379)
.-|-+++.+.....++++|+.|++.+. ++....... ......+.. .. +.. .. ..+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~---------~~~~~~pdG-~i--lvs----~~--------~~V 58 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWEC---------NSVAATKAG-EI--LFS----YS--------KGA 58 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCC---------CEEEECTTS-CE--EEE----CB--------SEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCC---------cCeEECCCC-CE--EEe----CC--------CCE
Confidence 334455555555679999999997543 332210011 122233332 22 221 11 123
Q ss_pred EEEEcCC-CcccccccccCCcceeeeccccEEECceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCC---CCcEE
Q 039590 186 AMYNLRT-NSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQS---EPTII 261 (379)
Q Consensus 186 ~vyss~~-~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~---~~~~l 261 (379)
..|+... -.|+.-. .. ........+..||.++...... ...|++||...+.-..+.+...... ....+
T Consensus 59 ~~~d~~G~~~W~~~~----~~-~~~~~~~~~~~dG~~lv~~~~~---~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v 130 (276)
T 3no2_A 59 KMITRDGRELWNIAA----PA-GCEMQTARILPDGNALVAWCGH---PSTILEVNMKGEVLSKTEFETGIERPHAQFRQI 130 (276)
T ss_dssp EEECTTSCEEEEEEC----CT-TCEEEEEEECTTSCEEEEEEST---TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCC
T ss_pred EEECCCCCEEEEEcC----CC-CccccccEECCCCCEEEEecCC---CCEEEEEeCCCCEEEEEeccCCCCcccccccCc
Confidence 4777622 2566443 10 0111222344567766655431 2478888886554334443322100 00011
Q ss_pred -EEECCeEEEEEEcCCCCEEEEEEEcC-CeEEEEEEECCCCCcccceEEeeCCeEEEEEe-CCEEEEEeCCCCcEE
Q 039590 262 -GVYNHSLCVLLSHNIENYYDIWVMKD-KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST-SGHLLLYDPNTQEMR 334 (379)
Q Consensus 262 -~~~~G~L~l~~~~~~~~~i~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~-~~~l~~yd~~t~~~~ 334 (379)
...+|.+.+.... ...+..|-.+. ..|+... +.. ..-.....+|.+++... +++++.+|++|++..
T Consensus 131 ~~~~~G~~lv~~~~--~~~v~~~d~~G~~~w~~~~--~~~---~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~ 199 (276)
T 3no2_A 131 NKNKKGNYLVPLFA--TSEVREIAPNGQLLNSVKL--SGT---PFSSAFLDNGDCLVACGDAHCFVQLNLESNRIV 199 (276)
T ss_dssp EECTTSCEEEEETT--TTEEEEECTTSCEEEEEEC--SSC---CCEEEECTTSCEEEECBTTSEEEEECTTTCCEE
T ss_pred eECCCCCEEEEecC--CCEEEEECCCCCEEEEEEC--CCC---ccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE
Confidence 2335665554433 44555554443 3444222 111 11122344677777655 558999999977754
No 104
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=69.28 E-value=48 Score=28.68 Aligned_cols=110 Identities=16% Similarity=0.123 Sum_probs=61.9
Q ss_pred CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCC-----------------CCCCcEEEEE--CCeEEEEEEcCCCC
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIP-----------------QSEPTIIGVY--NHSLCVLLSHNIEN 278 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~-----------------~~~~~~l~~~--~G~L~l~~~~~~~~ 278 (379)
+|.++|..... ..|..||..+.++..+..+... ......++.. +|.|++.... .
T Consensus 29 ~g~~l~v~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~---~ 101 (322)
T 2fp8_A 29 TNKGFYTSVQD----GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY---Y 101 (322)
T ss_dssp TCSSEEEECTT----SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT---T
T ss_pred CCCEEEEEcCC----CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC---C
Confidence 67878876543 5899999988877766543211 0112245554 6888877643 2
Q ss_pred EEEEEEEcC--CeEEEEEEECCCCCc--ccceEEee-CCeEEEEEeC------------------CEEEEEeCCCCcEEE
Q 039590 279 YYDIWVMKD--KCWIKQLSVGPFVGV--QRPLGFWK-KGAFFVVSTS------------------GHLLLYDPNTQEMRD 335 (379)
Q Consensus 279 ~i~iW~l~~--~~W~~~~~i~~~~~~--~~~~~~~~-~~~il~~~~~------------------~~l~~yd~~t~~~~~ 335 (379)
. |+.++. .....+........+ ..-+.+.. +|.+++.... +.++.||+++++.+.
T Consensus 102 ~--i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 179 (322)
T 2fp8_A 102 H--LSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL 179 (322)
T ss_dssp E--EEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE
T ss_pred C--EEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE
Confidence 2 444443 222222111111111 22245556 6788876532 579999999888765
Q ss_pred e
Q 039590 336 L 336 (379)
Q Consensus 336 v 336 (379)
+
T Consensus 180 ~ 180 (322)
T 2fp8_A 180 L 180 (322)
T ss_dssp E
T ss_pred e
Confidence 4
No 105
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=68.54 E-value=55 Score=27.93 Aligned_cols=138 Identities=9% Similarity=0.043 Sum_probs=77.3
Q ss_pred EEEEEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecCCCCccEEEEEECCCce-EEEecCCCCCCCCCcEEE
Q 039590 184 HVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDV-FEEVQEPYIPQSEPTIIG 262 (379)
Q Consensus 184 ~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~-~~~i~~P~~~~~~~~~l~ 262 (379)
.+.+++.++++=...- .+++..+...-...++.+|-+.... ..+.+||..+.+ -..++.+.. . ..|+
T Consensus 66 ~v~~vD~~Tgkv~~~~----~l~~~~FgeGit~~g~~ly~ltw~~----~~v~v~D~~t~~~~~ti~~~~e--G--~glt 133 (262)
T 3nol_A 66 SIRKVDIESGKTLQQI----ELGKRYFGEGISDWKDKIVGLTWKN----GLGFVWNIRNLRQVRSFNYDGE--G--WGLT 133 (262)
T ss_dssp EEEEECTTTCCEEEEE----ECCTTCCEEEEEEETTEEEEEESSS----SEEEEEETTTCCEEEEEECSSC--C--CCEE
T ss_pred eEEEEECCCCcEEEEE----ecCCccceeEEEEeCCEEEEEEeeC----CEEEEEECccCcEEEEEECCCC--c--eEEe
Confidence 3448888887532222 1111111122244578998887654 689999998755 456777542 2 3455
Q ss_pred EECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCC---Cccc--ceEEeeCCeEEEEEe-CCEEEEEeCCCCcEEE-
Q 039590 263 VYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFV---GVQR--PLGFWKKGAFFVVST-SGHLLLYDPNTQEMRD- 335 (379)
Q Consensus 263 ~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~---~~~~--~~~~~~~~~il~~~~-~~~l~~yd~~t~~~~~- 335 (379)
.-++.|++... .. .||+++-..=..+.+|.... .+.. -+. +.+|.++.... ++.+...|++|+++..
T Consensus 134 ~dg~~L~~SdG---s~--~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe-~~~G~lyan~w~~~~I~vIDp~tG~V~~~ 207 (262)
T 3nol_A 134 HNDQYLIMSDG---TP--VLRFLDPESLTPVRTITVTAHGEELPELNELE-WVDGEIFANVWQTNKIVRIDPETGKVTGI 207 (262)
T ss_dssp ECSSCEEECCS---SS--EEEEECTTTCSEEEEEECEETTEECCCEEEEE-EETTEEEEEETTSSEEEEECTTTCBEEEE
T ss_pred cCCCEEEEECC---CC--eEEEEcCCCCeEEEEEEeccCCccccccceeE-EECCEEEEEEccCCeEEEEECCCCcEEEE
Confidence 55556766542 22 47777752222333343211 0111 123 23678776654 7799999999999764
Q ss_pred eEEe
Q 039590 336 LGVT 339 (379)
Q Consensus 336 v~~~ 339 (379)
+.+.
T Consensus 208 Id~~ 211 (262)
T 3nol_A 208 IDLN 211 (262)
T ss_dssp EECT
T ss_pred EECC
Confidence 5553
No 106
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=67.39 E-value=59 Score=27.79 Aligned_cols=101 Identities=9% Similarity=0.085 Sum_probs=54.4
Q ss_pred cEEEEEECCCceEEEecCCCCCCCCCcEEEE-ECCe-EEEEEEcC---CCCEEEEEEEcCCeEEEEEE-ECCCCCcccce
Q 039590 233 AVILSFHLGNDVFEEVQEPYIPQSEPTIIGV-YNHS-LCVLLSHN---IENYYDIWVMKDKCWIKQLS-VGPFVGVQRPL 306 (379)
Q Consensus 233 ~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~-~~G~-L~l~~~~~---~~~~i~iW~l~~~~W~~~~~-i~~~~~~~~~~ 306 (379)
..|..+|..+.++..+. ... ..-.++. -+|+ |++..... ....+.+|-++......... .........-+
T Consensus 169 ~~v~~~d~~~g~~~~~~-~~~---~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi 244 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMA-DLD---HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGF 244 (305)
T ss_dssp EEEEEECSSSCCCEEEE-EES---SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSE
T ss_pred CeEEEEcCCCCcEEEEe-cCC---CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeE
Confidence 57999999877776654 111 1113333 3565 55554321 01455555555432221111 12112223345
Q ss_pred EEeeCCeEEEEEeCCEEEEEeCCCCcEEEeEE
Q 039590 307 GFWKKGAFFVVSTSGHLLLYDPNTQEMRDLGV 338 (379)
Q Consensus 307 ~~~~~~~il~~~~~~~l~~yd~~t~~~~~v~~ 338 (379)
.+..+|.+++.. .+.+..||++.+.+..+..
T Consensus 245 ~~d~~G~lwv~~-~~gv~~~~~~g~~~~~~~~ 275 (305)
T 3dr2_A 245 CVDRGGWLWSSS-GTGVCVFDSDGQLLGHIPT 275 (305)
T ss_dssp EECTTSCEEECC-SSEEEEECTTSCEEEEEEC
T ss_pred EECCCCCEEEec-CCcEEEECCCCCEEEEEEC
Confidence 666677866554 6679999998877777764
No 107
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=66.72 E-value=72 Score=28.56 Aligned_cols=56 Identities=7% Similarity=0.020 Sum_probs=38.5
Q ss_pred EEEEEEcCCeEEEEEEECCCCCcccceEEeeCCe-EEEEEe--CCEEEEEeCCCCcEEEe
Q 039590 280 YDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGA-FFVVST--SGHLLLYDPNTQEMRDL 336 (379)
Q Consensus 280 i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~--~~~l~~yd~~t~~~~~v 336 (379)
=+||+.+-.+...+.+|+.. .-...+.+..+|+ +++... ++.+.+||.++++...-
T Consensus 298 ~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 298 KEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 36888887666777777522 2244566677777 555543 78999999999886643
No 108
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=66.32 E-value=73 Score=28.93 Aligned_cols=117 Identities=11% Similarity=-0.012 Sum_probs=68.4
Q ss_pred ECceEeeEeecCCCCccEEEEEECCCceEEE---ecC-C-----CCC--CCCC-cEEEEECCeEEEEEEcC-----CCCE
Q 039590 217 VDGVCYWLSRFRNNDHAVILSFHLGNDVFEE---VQE-P-----YIP--QSEP-TIIGVYNHSLCVLLSHN-----IENY 279 (379)
Q Consensus 217 ~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~---i~~-P-----~~~--~~~~-~~l~~~~G~L~l~~~~~-----~~~~ 279 (379)
.+|.++|.+..+ .+..+|+.++.-.. +.+ . ... .... ..+-.-+++|++..... ....
T Consensus 236 ~dG~~~~vs~~g-----~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~ 310 (386)
T 3sjl_D 236 KAGRLVWPTYTG-----KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTAS 310 (386)
T ss_dssp TTTEEEEEBTTS-----EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCE
T ss_pred CCCcEEEEeCCC-----EEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCC
Confidence 378999987654 79999998765322 210 0 010 1111 12212345677765421 2345
Q ss_pred EEEEEEcCCeEEEEEEECCCCCcccceEEeeCCe-EEEE-Ee-CCEEEEEeCCCCcEE-EeEEe
Q 039590 280 YDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGA-FFVV-ST-SGHLLLYDPNTQEMR-DLGVT 339 (379)
Q Consensus 280 i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~-~~-~~~l~~yd~~t~~~~-~v~~~ 339 (379)
=+||+++-.++..+.+|+.... ..-+.+..+++ .++. +. ++.+.+||.++++.. .+...
T Consensus 311 ~~V~viD~~t~kv~~~i~vg~~-~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 311 RFVVVLDAKTGERLAKFEMGHE-IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp EEEEEEETTTCCEEEEEEEEEE-ECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred CEEEEEECCCCeEEEEEECCCC-cceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence 7899999866666666653221 22355666765 5555 33 679999999998854 35543
No 109
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=65.71 E-value=93 Score=29.50 Aligned_cols=113 Identities=9% Similarity=0.020 Sum_probs=66.8
Q ss_pred CceEeeEeecCCCCccEEEEEECCCceEEE-ecCCCCC-CCCCcEEEEEC-CeEEEEEEcCCCCEEEEEEEcC-----Ce
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDVFEE-VQEPYIP-QSEPTIIGVYN-HSLCVLLSHNIENYYDIWVMKD-----KC 289 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~~~~-i~~P~~~-~~~~~~l~~~~-G~L~l~~~~~~~~~i~iW~l~~-----~~ 289 (379)
+|...+.+... ...|..+|..+.+... ++..... ......+..-+ |.+++.... .+..+.||-++. ..
T Consensus 334 dg~~l~va~~~---~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~-~d~~V~v~d~~~~~~~~~~ 409 (543)
T 1nir_A 334 SHRYFMTAANN---SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL-GDGSISLIGTDPKNHPQYA 409 (543)
T ss_dssp TSCEEEEEEGG---GTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBS-SSSEEEEEECCTTTCTTTB
T ss_pred CCCEEEEEecC---CCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccC-CCceEEEEEeCCCCCchhc
Confidence 56644444433 3578889999876543 4432111 11222333334 566544432 467899999875 34
Q ss_pred EEEEEEECCCCCcccceEEeeCCeEEEEEe--------CCEEEEEeCCCCcEE
Q 039590 290 WIKQLSVGPFVGVQRPLGFWKKGAFFVVST--------SGHLLLYDPNTQEMR 334 (379)
Q Consensus 290 W~~~~~i~~~~~~~~~~~~~~~~~il~~~~--------~~~l~~yd~~t~~~~ 334 (379)
|..+.++.....-...+.+..++..+.... +..+.+||.++.+..
T Consensus 410 ~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 410 WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp TSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred CeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 988888874332223455566777766653 458999999987743
No 110
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=65.36 E-value=1e+02 Score=29.89 Aligned_cols=188 Identities=11% Similarity=0.017 Sum_probs=91.0
Q ss_pred ceecceEEEecCCCCeEEEEecCCCce--ecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceee
Q 039590 105 GPFDGIFCIHGPTNDRLILCNLETKES--RTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEF 182 (379)
Q Consensus 105 ~s~~GLl~~~~~~~~~~~V~NP~T~~~--~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~ 182 (379)
...+|.|...+....++..+++-.... ..+.. .. ....|+.+|...+.-.+.- .. ...
T Consensus 48 ~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~-~~---------~~P~GlAvD~~~~~ly~~d----~~------~~~ 107 (619)
T 3s94_A 48 VFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-GL---------LSPDGLACDWLGEKLYWTD----SE------TNR 107 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEEC-----CEEEECS-SC---------SCEEEEEEETTTTEEEEEE----TT------TTE
T ss_pred EeCCCEEEEEECCCCeEEEEEccCCCceEEEEeC-CC---------CCcCeEEEEecCCEEEEEe----CC------CCE
Confidence 345777887765556788888765521 11221 11 1247888887655432221 11 113
Q ss_pred eEEEEEEcCCCcccccccccCCcceeeeccccEEE---CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCc
Q 039590 183 AHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYV---DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPT 259 (379)
Q Consensus 183 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~ 259 (379)
.+ +++..+..=+.+.. ... ....++.+ +|.|||..... ...|..+++....-..+--.. . .++-
T Consensus 108 I~--v~~~dG~~~~~l~~--~~l----~~P~~Iavdp~~g~ly~tD~g~---~~~I~r~~~dG~~~~~l~~~~-~-~~P~ 174 (619)
T 3s94_A 108 IE--VSNLDGSLRKVLFW--QEL----DQPRAIALDPSSGFMYWTDWGE---VPKIERAGMDGSSRFIIINSE-I-YWPN 174 (619)
T ss_dssp EE--EEETTSCSCEEEEC--SSC----SCCCCEEEETTTTEEEEEECSS---SCEEEEEETTSCSCEEEECSS-C-SSEE
T ss_pred EE--EEECCCCCEEEEEe--CCC----CCCceEEEecCCCeEEEeccCC---CCEEEEEECCCCceEEEEeCC-C-CCCc
Confidence 34 77776543222220 011 02345555 68999987542 347999998765443332111 1 1122
Q ss_pred EEEEE--CCeEEEEEEcCCCCEEEEEEEcC-CeEEEEEEECCCCCcccceEEeeCC-eEEEEEe-CCEEEEEeCCCCc
Q 039590 260 IIGVY--NHSLCVLLSHNIENYYDIWVMKD-KCWIKQLSVGPFVGVQRPLGFWKKG-AFFVVST-SGHLLLYDPNTQE 332 (379)
Q Consensus 260 ~l~~~--~G~L~l~~~~~~~~~i~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~-~il~~~~-~~~l~~yd~~t~~ 332 (379)
.|+.. +|+|+++... .. .||..+- ..-.+.. +. ..+..|.++.-.+ .+|.... ...+...|..+++
T Consensus 175 Glald~~~~~LY~aD~~--~~--~I~~~~~dG~~~~~~-~~--~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 175 GLTLDYEEQKLYWADAK--LN--FIHKSNLDGTNRQAV-VK--GSLPHPFALTLFEDILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp EEEEETTTTEEEEEETT--TC--CEEEESSSCCEEC------------CCCEEESSSEEEEECTTTCSEEEEESSSCC
T ss_pred EEEEEccCCEEEEEeCC--CC--eEEEecCCCCccEEE-Ee--CCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCc
Confidence 45544 6889988654 22 4566554 2211111 11 1234555544333 4444433 5678888887765
No 111
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=64.62 E-value=83 Score=30.85 Aligned_cols=114 Identities=15% Similarity=0.230 Sum_probs=61.2
Q ss_pred ccccEEECceEeeEeecCCCCccEEEEEECCC--ceEEEe-cCCCCC------CCCCcEEEEECCeEEEEEEcCCCCEEE
Q 039590 211 WSGSLYVDGVCYWLSRFRNNDHAVILSFHLGN--DVFEEV-QEPYIP------QSEPTIIGVYNHSLCVLLSHNIENYYD 281 (379)
Q Consensus 211 ~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~--e~~~~i-~~P~~~------~~~~~~l~~~~G~L~l~~~~~~~~~i~ 281 (379)
....+..+|.+|..+..+ .|.++|..+ +.|+.- ..+... ......++..+|++++... ...+.
T Consensus 59 ~~~P~v~~g~vyv~~~~~-----~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---dg~l~ 130 (668)
T 1kv9_A 59 EATPLFHDGVIYTSMSWS-----RVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL---DGRLI 130 (668)
T ss_dssp CCCCEEETTEEEEEEGGG-----EEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT---TSEEE
T ss_pred ccCCEEECCEEEEECCCC-----eEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC---CCEEE
Confidence 345688999999987655 899999765 457642 222110 0001123445676665432 23333
Q ss_pred EEEEcC--CeEEEEEEECCCC--Cc-ccceEEeeCCeEEEEEe------CCEEEEEeCCCCcEEE
Q 039590 282 IWVMKD--KCWIKQLSVGPFV--GV-QRPLGFWKKGAFFVVST------SGHLLLYDPNTQEMRD 335 (379)
Q Consensus 282 iW~l~~--~~W~~~~~i~~~~--~~-~~~~~~~~~~~il~~~~------~~~l~~yd~~t~~~~~ 335 (379)
.+-.+. ..|..... ++.. .+ ..|+. .++.+++... ++.+++||.+|++...
T Consensus 131 alD~~tG~~~W~~~~~-~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 192 (668)
T 1kv9_A 131 ALDAKTGKAIWSQQTT-DPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAW 192 (668)
T ss_dssp EEETTTCCEEEEEECS-CTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred EEECCCCCEeeeeccC-CCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEE
Confidence 332222 56765321 1111 11 23332 2556665443 3689999999998664
No 112
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=64.59 E-value=83 Score=28.53 Aligned_cols=199 Identities=10% Similarity=0.015 Sum_probs=97.6
Q ss_pred eecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEE
Q 039590 106 PFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHV 185 (379)
Q Consensus 106 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~ 185 (379)
..+|-|.+.+.....+.++|+.+++...+..... .. . +.+++..+ .++.. .. .. ...+
T Consensus 139 d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~---~~-------~-ia~~~~g~--~l~~~-d~--~~------~~~I 196 (409)
T 3hrp_A 139 VGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK---GG-------K-PAVTKDKQ--RVYSI-GW--EG------THTV 196 (409)
T ss_dssp CSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC---BC-------B-CEECTTSS--EEEEE-BS--ST------TCEE
T ss_pred eCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC---CC-------c-eeEecCCC--cEEEE-ec--CC------CceE
Confidence 3567766666555679999999988766543311 01 2 44454433 12221 00 00 0133
Q ss_pred EEEEcCCCc-ccccccccCCcceeeeccccEEE---CceEeeEeecCCCCccEEEEEECCCceEEEec---CCCCCCCCC
Q 039590 186 AMYNLRTNS-WRDLKSFKSDHYVMSFWSGSLYV---DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQ---EPYIPQSEP 258 (379)
Q Consensus 186 ~vyss~~~~-W~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~---~P~~~~~~~ 258 (379)
.+++..++. .+.+...... ... ...++.+ +|.||+... ...|..+|+.+.....+. ........+
T Consensus 197 ~~~d~~~~~~~~~~g~~~~~--~~~-~p~~iav~p~~g~lyv~d~-----~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P 268 (409)
T 3hrp_A 197 YVYMKASGWAPTRIGQLGST--FSG-KIGAVALDETEEWLYFVDS-----NKNFGRFNVKTQEVTLIKQLELSGSLGTNP 268 (409)
T ss_dssp EEEEGGGTTCEEEEEECCTT--SCS-CCCBCEECTTSSEEEEECT-----TCEEEEEETTTCCEEEEEECCCCSCCCCSS
T ss_pred EEEEcCCCceeEEeeeccch--hcC-CcEEEEEeCCCCeEEEEEC-----CCcEEEEECCCCCEEEEecccccCCCCCCc
Confidence 366554332 1222100000 001 1122222 789999432 248999999877665552 111111111
Q ss_pred c-EEEEE--CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCC----------CCcccc--eEEeeCCeEEEEEe--CC
Q 039590 259 T-IIGVY--NHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPF----------VGVQRP--LGFWKKGAFFVVST--SG 321 (379)
Q Consensus 259 ~-~l~~~--~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~----------~~~~~~--~~~~~~~~il~~~~--~~ 321 (379)
. .++.. +|.|++.... ...+..|-.+ ..-....--... ..+..| +.+..+|.+++... +.
T Consensus 269 ~~~ia~~p~~g~lyv~d~~--~~~I~~~~~~-g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~ 345 (409)
T 3hrp_A 269 GPYLIYYFVDSNFYMSDQN--LSSVYKITPD-GECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGY 345 (409)
T ss_dssp CCEEEEETTTTEEEEEETT--TTEEEEECTT-CCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTC
T ss_pred cccEEEeCCCCEEEEEeCC--CCEEEEEecC-CCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCC
Confidence 3 56644 5788877654 4444444332 221111111100 012345 44556678777754 56
Q ss_pred EEEEEeCCCCcEEEeE
Q 039590 322 HLLLYDPNTQEMRDLG 337 (379)
Q Consensus 322 ~l~~yd~~t~~~~~v~ 337 (379)
.+..+|+.++++..+.
T Consensus 346 ~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 346 CLRKLDILDGYVSTVA 361 (409)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCEEEEEe
Confidence 8999998788776654
No 113
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=64.32 E-value=83 Score=28.45 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=34.1
Q ss_pred CceEeeEeecCCCCccEEEEEECCCceEEEe-cCCCCCCCCCcEEEEECCeEEEEEEc
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDVFEEV-QEPYIPQSEPTIIGVYNHSLCVLLSH 274 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~l~~~~G~L~l~~~~ 274 (379)
+|.|||..... ..|.++|+....-+.+ ..+.. ....+.|+..+|.|++....
T Consensus 257 ~~~lY~aD~~~----~~I~~~d~dG~~~~~~~~~~~~-l~~P~gl~v~~~~lywtd~~ 309 (400)
T 3p5b_L 257 SGRLYWVDSKL----HSISSIDVNGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDII 309 (400)
T ss_dssp TTEEEEEETTT----TEEEEEETTSCCCEEEEECSST-TSSEEEEEEETTEEEEEESS
T ss_pred CCEEEEEECCC----CEEEEEeCCCCccEEEEeCCCC-CCCCEEEEEeCCEEEEecCC
Confidence 58999987553 6899999976544333 32222 12344777788888887744
No 114
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=63.38 E-value=67 Score=27.49 Aligned_cols=108 Identities=6% Similarity=-0.051 Sum_probs=57.4
Q ss_pred CceEeeEeecCCCCccEEEEEECCCceEE-EecCCCCCCCCCcEEE-EECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEE
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDVFE-EVQEPYIPQSEPTIIG-VYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLS 295 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~~~-~i~~P~~~~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~ 295 (379)
+|.+|...... ..|..+|+.+.+.. .++.+... ....+. .-+|+..++... ....+.+|-++...-.....
T Consensus 10 ~~~~~v~~~~~----~~v~~~d~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~~~v~~~-~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 10 GHEYMIVTNYP----NNLHVVDVASDTVYKSCVMPDKF--GPGTAMMAPDNRTAYVLNN-HYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp TCEEEEEEETT----TEEEEEETTTTEEEEEEECSSCC--SSCEEEECTTSSEEEEEET-TTTEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEeCCC----CeEEEEECCCCcEEEEEecCCCC--CCceeEECCCCCEEEEEeC-CCCcEEEEeCCCCcEEEEEE
Confidence 45555544433 58999999887653 45665411 112344 345654333333 35678888776533222222
Q ss_pred ECCCC----CcccceEEeeCCeEEEEEe-------------CCEEEEEeCCCCc
Q 039590 296 VGPFV----GVQRPLGFWKKGAFFVVST-------------SGHLLLYDPNTQE 332 (379)
Q Consensus 296 i~~~~----~~~~~~~~~~~~~il~~~~-------------~~~l~~yd~~t~~ 332 (379)
....+ .....+.+..+|+.++... ...+..||+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 22110 0123355666676554443 3789999998854
No 115
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=63.27 E-value=78 Score=27.79 Aligned_cols=91 Identities=7% Similarity=-0.055 Sum_probs=45.7
Q ss_pred cEEEEEECCCceE-EEecCCCCCCCCCcEEEE-ECC-eEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEe
Q 039590 233 AVILSFHLGNDVF-EEVQEPYIPQSEPTIIGV-YNH-SLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFW 309 (379)
Q Consensus 233 ~~i~~fD~~~e~~-~~i~~P~~~~~~~~~l~~-~~G-~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~ 309 (379)
..|..+|+.+.+- ..+..... .-..+.. .+| .+.+.+.. +..+.||-++... ....+... ....-+.+.
T Consensus 249 ~~i~~wd~~~~~~~~~~~~~~~---~v~~l~~sp~~~~~lasgs~--D~~i~iwd~~~~~--~~~~~~H~-~~V~~vafs 320 (357)
T 4g56_B 249 GNVSLVNIKNPDSAQTSAVHSQ---NITGLAYSYHSSPFLASISE--DCTVAVLDADFSE--VFRDLSHR-DFVTGVAWS 320 (357)
T ss_dssp SCEEEEESSCGGGCEEECCCSS---CEEEEEECSSSSCCEEEEET--TSCEEEECTTSCE--EEEECCCS-SCEEEEEEC
T ss_pred cceeEEECCCCcEeEEEeccce---eEEEEEEcCCCCCEEEEEeC--CCEEEEEECCCCc--EeEECCCC-CCEEEEEEe
Confidence 3678888876543 22222211 1113433 244 44444444 6789999766422 22223322 212224444
Q ss_pred -eCCeEEEE-EeCCEEEEEeCCCC
Q 039590 310 -KKGAFFVV-STSGHLLLYDPNTQ 331 (379)
Q Consensus 310 -~~~~il~~-~~~~~l~~yd~~t~ 331 (379)
.++.++.. ..++.+.+||+.++
T Consensus 321 P~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 321 PLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SSSTTEEEEEETTSCEEEEECC--
T ss_pred CCCCCEEEEEcCCCeEEEEECCCC
Confidence 35666554 44789999998654
No 116
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=63.21 E-value=73 Score=27.42 Aligned_cols=97 Identities=9% Similarity=0.032 Sum_probs=52.8
Q ss_pred cEEEEEECCCceEEEecCCCCCCCCCcEEEE-ECCe-EEEEEEcCCCCEEEEEEEcC---CeEEEEEEECCCCCcccceE
Q 039590 233 AVILSFHLGNDVFEEVQEPYIPQSEPTIIGV-YNHS-LCVLLSHNIENYYDIWVMKD---KCWIKQLSVGPFVGVQRPLG 307 (379)
Q Consensus 233 ~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~-~~G~-L~l~~~~~~~~~i~iW~l~~---~~W~~~~~i~~~~~~~~~~~ 307 (379)
..|..||..+.+...+.-... ..-.++. .+|+ |++.... ...+.++-++. ......... +. ..-+.
T Consensus 165 g~v~~~d~~~~~~~~~~~~~~---~p~gia~~~dg~~lyv~d~~--~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~ 235 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLKELH---VPGGAEVSADSSFVLVAEFL--SHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIK 235 (322)
T ss_dssp EEEEEEETTTTEEEEEEEEES---CCCEEEECTTSSEEEEEEGG--GTEEEEEESSSTTTTCEEEEEEC---SS-EEEEE
T ss_pred ceEEEEeCCCCEEEEeccCCc---cCcceEECCCCCEEEEEeCC--CCeEEEEECCCCcCCccceEEeC---CC-CCCeE
Confidence 579999998776654321000 1113443 3454 6665543 44555555543 233332221 22 33345
Q ss_pred EeeCCeEEEEEeC-----------CEEEEEeCCCCcEEEeEE
Q 039590 308 FWKKGAFFVVSTS-----------GHLLLYDPNTQEMRDLGV 338 (379)
Q Consensus 308 ~~~~~~il~~~~~-----------~~l~~yd~~t~~~~~v~~ 338 (379)
+..+|.+++.... ..+..||++.+.++.+..
T Consensus 236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~ 277 (322)
T 2fp8_A 236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPL 277 (322)
T ss_dssp ECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEEC
T ss_pred ECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEEC
Confidence 5566787777543 569999998766666664
No 117
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=62.88 E-value=51 Score=28.38 Aligned_cols=70 Identities=10% Similarity=0.106 Sum_probs=41.6
Q ss_pred CeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEEEE-eCCEEEEEeCCCCcEEEeE
Q 039590 266 HSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVS-TSGHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 266 G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~-~~~~l~~yd~~t~~~~~v~ 337 (379)
|.+.+.+.. +..+.||-++.........+.....-..-+.+..++..++.. .++.+.+||+++++...+.
T Consensus 54 g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 124 (368)
T 3mmy_A 54 GNFLIAGSW--ANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA 124 (368)
T ss_dssp SEEEEEEET--TSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEEECC--CCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeec
Confidence 466666655 678999999862222222232222212234445566655544 4789999999998866543
No 118
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=62.57 E-value=84 Score=30.13 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=61.0
Q ss_pred ccccEEECceEeeEee-cCCCCccEEEEEEC-CC--ceEEEe-cCCCCC------CCCCcEEEEECCeEEEEEEcCCCCE
Q 039590 211 WSGSLYVDGVCYWLSR-FRNNDHAVILSFHL-GN--DVFEEV-QEPYIP------QSEPTIIGVYNHSLCVLLSHNIENY 279 (379)
Q Consensus 211 ~~~~v~~~G~lywl~~-~~~~~~~~i~~fD~-~~--e~~~~i-~~P~~~------~~~~~~l~~~~G~L~l~~~~~~~~~ 279 (379)
...++..+|.+|..+. .+ .|.++|. .+ +.|+.- ..+... ......++..+|+|++... ...
T Consensus 55 ~~~P~v~~g~vyv~~~~~~-----~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---dg~ 126 (571)
T 2ad6_A 55 EGAPLVIGDMMYVHSAFPN-----NTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA---NGH 126 (571)
T ss_dssp CSCCEEETTEEEEECSTTT-----CEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---TSE
T ss_pred ccccEEECCEEEEEeCCCC-----EEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC---CCE
Confidence 3456888999999876 43 7999998 54 457642 211100 0001134456777665432 222
Q ss_pred EEEEEEc--C--CeEEEEEEECC-CCCc-ccceEEeeCCeEEEEEe------CCEEEEEeCCCCcEEE
Q 039590 280 YDIWVMK--D--KCWIKQLSVGP-FVGV-QRPLGFWKKGAFFVVST------SGHLLLYDPNTQEMRD 335 (379)
Q Consensus 280 i~iW~l~--~--~~W~~~~~i~~-~~~~-~~~~~~~~~~~il~~~~------~~~l~~yd~~t~~~~~ 335 (379)
+..++ . ..|.....-.. ...+ ..|+. .++.+++... ++.+++||.+|++...
T Consensus 127 --l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 190 (571)
T 2ad6_A 127 --LLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp --EEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred --EEEEECCCCCEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence 33333 2 46764321100 0011 23432 2566666554 5799999999988664
No 119
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=61.49 E-value=74 Score=26.92 Aligned_cols=95 Identities=13% Similarity=0.092 Sum_probs=52.1
Q ss_pred cEEEEEECCCceEE-EecCCCCCCCCCc-EEEE-ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECC-CCCcccceEE
Q 039590 233 AVILSFHLGNDVFE-EVQEPYIPQSEPT-IIGV-YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGP-FVGVQRPLGF 308 (379)
Q Consensus 233 ~~i~~fD~~~e~~~-~i~~P~~~~~~~~-~l~~-~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~-~~~~~~~~~~ 308 (379)
..|..+|+.+.+.. .+..... .. .+.. .+|.+.+.+.. +..+.+|-+....- ...+.. .......+.+
T Consensus 129 ~~i~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~ 200 (312)
T 4ery_A 129 ESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSY--DGLCRIWDTASGQC--LKTLIDDDNPPVSFVKF 200 (312)
T ss_dssp SCEEEEETTTCCEEEEECCCSS----CEEEEEECTTSSEEEEEET--TSCEEEEETTTCCE--EEEECCSSCCCEEEEEE
T ss_pred CcEEEEECCCCEEEEEecCCCC----cEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCce--eeEEeccCCCceEEEEE
Confidence 46888898776532 2222111 11 2332 35676666665 67899998876321 222211 1111122444
Q ss_pred eeCCeEEEEE-eCCEEEEEeCCCCcEEE
Q 039590 309 WKKGAFFVVS-TSGHLLLYDPNTQEMRD 335 (379)
Q Consensus 309 ~~~~~il~~~-~~~~l~~yd~~t~~~~~ 335 (379)
..++..++.. .++.+.+||+++++...
T Consensus 201 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 228 (312)
T 4ery_A 201 SPNGKYILAATLDNTLKLWDYSKGKCLK 228 (312)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 5566655554 47899999998876543
No 120
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=61.30 E-value=83 Score=27.42 Aligned_cols=109 Identities=12% Similarity=0.071 Sum_probs=59.0
Q ss_pred CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEEEE--CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEE
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGVY--NHSLCVLLSHNIENYYDIWVMKDKCWIKQLS 295 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~~--~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~ 295 (379)
+|.+||..... ...|..+|+....-..+-- ... ..+-.|+.. +|.|++.... ...|...-++... .++.
T Consensus 133 ~g~ly~td~~~---~~~I~r~~~dG~~~~~~~~-~~l-~~Pnglavd~~~~~lY~aD~~--~~~I~~~d~dG~~-~~~~- 203 (318)
T 3sov_A 133 SGFMYWTDWGE---VPKIERAGMDGSSRFIIIN-SEI-YWPNGLTLDYEEQKLYWADAK--LNFIHKSNLDGTN-RQAV- 203 (318)
T ss_dssp GTEEEEEECSS---SCEEEEEETTSCSCEEEEC-SSC-SCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCS-CEEE-
T ss_pred CCEEEEEecCC---CCEEEEEEcCCCCeEEEEE-CCC-CCccEEEEeccCCEEEEEECC--CCEEEEEcCCCCc-eEEE-
Confidence 58999987432 3589999987543332211 111 112245544 6788888754 4455544444311 1111
Q ss_pred ECCCCCcccceEEeeC-CeEEEEEe-CCEEEEEeCCCCcE-EEeE
Q 039590 296 VGPFVGVQRPLGFWKK-GAFFVVST-SGHLLLYDPNTQEM-RDLG 337 (379)
Q Consensus 296 i~~~~~~~~~~~~~~~-~~il~~~~-~~~l~~yd~~t~~~-~~v~ 337 (379)
+. ..+..|.++.-+ +.+|.... .+.+..+|+.+++. +.+.
T Consensus 204 ~~--~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 204 VK--GSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EC--SCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred ec--CCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 11 134566665433 45555543 67899999976654 4443
No 121
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=61.28 E-value=1.2e+02 Score=29.35 Aligned_cols=191 Identities=11% Similarity=0.038 Sum_probs=92.9
Q ss_pred eecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEE
Q 039590 106 PFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHV 185 (379)
Q Consensus 106 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~ 185 (379)
+.+|.|...+.....++.+++-+.....+-..... ...|+++|...+.-.+ . + . .....+
T Consensus 358 ~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~---------~p~GlAvD~~~~~lY~--t-D-~------~~~~I~- 417 (619)
T 3s94_A 358 PVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIA---------HPDGIAVDWVARNLYW--T-D-T------GTDRIE- 417 (619)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS---------CCCEEEEETTTTEEEE--E-E-T------TTTEEE-
T ss_pred cCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCC---------CcCceEEecccCcEEE--E-e-C------CCCcEE-
Confidence 34566666655445677777765433222211111 1257777865543221 1 1 1 111344
Q ss_pred EEEEcCCCcccccccccCCcceeeeccccEEE---CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEE
Q 039590 186 AMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYV---DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIG 262 (379)
Q Consensus 186 ~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~ 262 (379)
+.++.+..-+.+.. ..+ ....++.+ +|.|||..... ...|..+++....-..+- .... .++-.|+
T Consensus 418 -v~~~~G~~~~~l~~--~~l----~~P~~iavdp~~G~ly~tD~g~---~~~I~r~~~dG~~~~~l~-~~~l-~~P~Gla 485 (619)
T 3s94_A 418 -VTRLNGTMRKILIS--EDL----EEPRAIVLDPMVGYMYWTDWGE---IPKIERAALDGSDRVVLV-NTSL-GWPNGLA 485 (619)
T ss_dssp -EEETTSCSCEEEEC--TTC----CSEEEEEEETTTTEEEEEECSS---SCEEEEEETTSCSCEEEE-CSSC-SCEEEEE
T ss_pred -EEeCCCCeEEEEEE--CCC----CCeeeEEEEcCCCcEEEecCCC---CCEEEEEccCCCccEEEE-eCCC-CCCeeeE
Confidence 88776654333320 011 02234444 59999987542 357999988654332221 1111 1222455
Q ss_pred EE--CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCC-eEEEEEe-CCEEEEEeCCCCcEE
Q 039590 263 VY--NHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKG-AFFVVST-SGHLLLYDPNTQEMR 334 (379)
Q Consensus 263 ~~--~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~-~il~~~~-~~~l~~yd~~t~~~~ 334 (379)
.- +|+|+++... ...|+..-++. .-.+.. +. ..+..|.++.-.+ .||.... ...+...|..++.-+
T Consensus 486 lD~~~~~LY~aD~~--~~~I~~~~~dG-~~~~~~-~~--~~l~~P~glav~~~~ly~tD~~~~~I~~~~k~~g~~~ 555 (619)
T 3s94_A 486 LDYDEGKIYWGDAK--TDKIEVMNTDG-TGRRVL-VE--DKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAERE 555 (619)
T ss_dssp EETTTTEEEEEETT--TTEEEEEESSS-CCCEEE-EE--CCCCSSCCEEEETTEEEEECTTSSCEEEEESSSCCEE
T ss_pred EcccCCEEEEEECC--CCEEEEEecCC-CceEEE-ec--cCCCCcEEEEEECCEEEEeecCCCeEEEEEcCCCceE
Confidence 43 6889988765 44444444443 111111 11 1234554443333 4444433 557888888887543
No 122
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=60.97 E-value=87 Score=27.54 Aligned_cols=96 Identities=9% Similarity=0.089 Sum_probs=51.7
Q ss_pred cEEEEEECCCceEE-EecCCCCCCCCCcEEEE-ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEee
Q 039590 233 AVILSFHLGNDVFE-EVQEPYIPQSEPTIIGV-YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWK 310 (379)
Q Consensus 233 ~~i~~fD~~~e~~~-~i~~P~~~~~~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~ 310 (379)
..|..+|+.+.+.. .+..... .-..+.. -+|.+.+++.. +..+.+|-+.... ....+.....-..-+.+..
T Consensus 227 g~i~~~d~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~ 299 (425)
T 1r5m_A 227 GAIFVYQITEKTPTGKLIGHHG---PISVLEFNDTNKLLLSASD--DGTLRIWHGGNGN--SQNCFYGHSQSIVSASWVG 299 (425)
T ss_dssp GCEEEEETTCSSCSEEECCCSS---CEEEEEEETTTTEEEEEET--TSCEEEECSSSBS--CSEEECCCSSCEEEEEEET
T ss_pred CeEEEEEcCCCceeeeeccCCC---ceEEEEECCCCCEEEEEcC--CCEEEEEECCCCc--cceEecCCCccEEEEEECC
Confidence 47899998875432 2221111 1113443 35666555554 6789999877621 1222322222123344455
Q ss_pred CCeEEEEEeCCEEEEEeCCCCcEEE
Q 039590 311 KGAFFVVSTSGHLLLYDPNTQEMRD 335 (379)
Q Consensus 311 ~~~il~~~~~~~l~~yd~~t~~~~~ 335 (379)
++.++....++.+.+||+++++...
T Consensus 300 ~~~l~~~~~d~~i~i~d~~~~~~~~ 324 (425)
T 1r5m_A 300 DDKVISCSMDGSVRLWSLKQNTLLA 324 (425)
T ss_dssp TTEEEEEETTSEEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCcEeE
Confidence 5634444457899999998877543
No 123
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=60.27 E-value=82 Score=27.02 Aligned_cols=29 Identities=10% Similarity=0.290 Sum_probs=19.4
Q ss_pred eEEeeCCeEEEEE-eCCEEEEEeCCCCcEE
Q 039590 306 LGFWKKGAFFVVS-TSGHLLLYDPNTQEMR 334 (379)
Q Consensus 306 ~~~~~~~~il~~~-~~~~l~~yd~~t~~~~ 334 (379)
+.+..++.+++.. .++.+.+||+++++..
T Consensus 279 ~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~ 308 (368)
T 3mmy_A 279 IAFHPVHGTLATVGSDGRFSFWDKDARTKL 308 (368)
T ss_dssp EEECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred EEEecCCCEEEEEccCCeEEEEECCCCcEE
Confidence 3444566655554 4788999999987653
No 124
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=59.71 E-value=81 Score=26.77 Aligned_cols=105 Identities=9% Similarity=0.039 Sum_probs=58.9
Q ss_pred CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEEE-ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEE
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGV-YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSV 296 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i 296 (379)
+|.+||..... ..|..+|+.+.+...+..|... ..++. -+|.|.+.. ...+.+|-.+...+..+...
T Consensus 24 ~~~l~~~d~~~----~~i~~~d~~~~~~~~~~~~~~~----~~i~~~~dG~l~v~~----~~~l~~~d~~~g~~~~~~~~ 91 (297)
T 3g4e_A 24 SNSLLFVDIPA----KKVCRWDSFTKQVQRVTMDAPV----SSVALRQSGGYVATI----GTKFCALNWKEQSAVVLATV 91 (297)
T ss_dssp TTEEEEEETTT----TEEEEEETTTCCEEEEECSSCE----EEEEEBTTSSEEEEE----TTEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEECCC----CEEEEEECCCCcEEEEeCCCce----EEEEECCCCCEEEEE----CCeEEEEECCCCcEEEEEec
Confidence 47899987654 5899999998877766665322 13443 367755443 23455554443555544443
Q ss_pred CCCCCcccc--eEEeeCCeEEEEEe------------CCEEEEEeCCCCcEEE
Q 039590 297 GPFVGVQRP--LGFWKKGAFFVVST------------SGHLLLYDPNTQEMRD 335 (379)
Q Consensus 297 ~~~~~~~~~--~~~~~~~~il~~~~------------~~~l~~yd~~t~~~~~ 335 (379)
........+ +.+..+|.+++... ...++.+|.. ++.+.
T Consensus 92 ~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~ 143 (297)
T 3g4e_A 92 DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK 143 (297)
T ss_dssp CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE
T ss_pred CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE
Confidence 221111222 44455677776542 2368888875 34443
No 125
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=59.28 E-value=88 Score=27.06 Aligned_cols=194 Identities=11% Similarity=0.034 Sum_probs=93.3
Q ss_pred eecceEEEecCCCCeEEEEecCC----Ccee-cCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccce
Q 039590 106 PFDGIFCIHGPTNDRLILCNLET----KESR-TLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIY 180 (379)
Q Consensus 106 s~~GLl~~~~~~~~~~~V~NP~T----~~~~-~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~ 180 (379)
..+|.|...+....+++..++.+ .... .++.. .. ...++.+|...+...+.-. . .
T Consensus 39 ~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~-~~---------~p~glavd~~~~~ly~~d~----~------~ 98 (316)
T 1ijq_A 39 VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQ---------APDGLAVDWIHSNIYWTDS----V------L 98 (316)
T ss_dssp TTTTEEEEEETTTTEEEEEEC--------CEEEECSS-CS---------CCCEEEEETTTTEEEEEET----T------T
T ss_pred eCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC-CC---------CcCEEEEeecCCeEEEEEC----C------C
Confidence 34667777765556788888876 2212 22211 00 1246677765443222111 0 1
Q ss_pred eeeEEEEEEcCCCcccccccccCCcceeeeccccEEE---CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCC
Q 039590 181 EFAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYV---DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSE 257 (379)
Q Consensus 181 ~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~ 257 (379)
...+ +++..+..-+.+.. ... . ...++.+ +|.+||..... ...|..+|+....-..+-.. .. ..
T Consensus 99 ~~I~--~~~~~g~~~~~~~~--~~~---~-~P~~iavdp~~g~ly~~d~~~---~~~I~~~~~dG~~~~~~~~~-~~-~~ 165 (316)
T 1ijq_A 99 GTVS--VADTKGVKRKTLFR--ENG---S-KPRAIVVDPVHGFMYWTDWGT---PAKIKKGGLNGVDIYSLVTE-NI-QW 165 (316)
T ss_dssp TEEE--EEETTSSSEEEEEE--CTT---C-CEEEEEEETTTTEEEEEECSS---SCEEEEEETTSCCEEEEECS-SC-SC
T ss_pred CEEE--EEeCCCCceEEEEE--CCC---C-CcceEEeCCCCCEEEEEccCC---CCeEEEEcCCCCCeEEEEEC-CC-CC
Confidence 1333 77766543222220 011 0 1123333 68999987432 25899999876544433211 11 12
Q ss_pred CcEEEEE--CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEee-CCeEEEEEe-CCEEEEEeCCCCc-
Q 039590 258 PTIIGVY--NHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWK-KGAFFVVST-SGHLLLYDPNTQE- 332 (379)
Q Consensus 258 ~~~l~~~--~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~-~~~il~~~~-~~~l~~yd~~t~~- 332 (379)
.-.|+.. +|.|+++... ...|...-++. .-.+.. +.....+..|.++.- ++.+|+... .+.+..+|..+++
T Consensus 166 P~gla~d~~~~~lY~~D~~--~~~I~~~d~dg-~~~~~~-~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 166 PNGITLDLLSGRLYWVDSK--LHSISSIDVNG-GNRKTI-LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSD 241 (316)
T ss_dssp EEEEEEETTTTEEEEEETT--TTEEEEEETTS-CSCEEE-EECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCC
T ss_pred ceEEEEeccCCEEEEEECC--CCeEEEEecCC-CceEEE-eecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcc
Confidence 2245544 6788887755 44555444443 111111 111123345655433 355666554 5789999987665
Q ss_pred EEEe
Q 039590 333 MRDL 336 (379)
Q Consensus 333 ~~~v 336 (379)
.+.+
T Consensus 242 ~~~i 245 (316)
T 1ijq_A 242 VNLL 245 (316)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 3444
No 126
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=59.21 E-value=96 Score=27.46 Aligned_cols=93 Identities=10% Similarity=0.073 Sum_probs=51.1
Q ss_pred cEEEEEECCCce--EEEecCCCCCCCCCc-EEEEECCeEEEEEEcCCCCEEEEEEEcC-CeEEEEEEEC------CCCCc
Q 039590 233 AVILSFHLGNDV--FEEVQEPYIPQSEPT-IIGVYNHSLCVLLSHNIENYYDIWVMKD-KCWIKQLSVG------PFVGV 302 (379)
Q Consensus 233 ~~i~~fD~~~e~--~~~i~~P~~~~~~~~-~l~~~~G~L~l~~~~~~~~~i~iW~l~~-~~W~~~~~i~------~~~~~ 302 (379)
..|..+|+.+.+ ...+..... ... .+...+|.+.+.+.. +..+.||-+.+ ..-.....+. .....
T Consensus 313 g~i~vwd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~l~s~~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (420)
T 3vl1_A 313 GMLAQWDLRSPECPVGEFLINEG---TPINNVYFAAGALFVSSGF--DTSIKLDIISDPESERPAIEFETPTFLVSNDDA 387 (420)
T ss_dssp SEEEEEETTCTTSCSEEEEESTT---SCEEEEEEETTEEEEEETT--TEEEEEEEECCTTCCSCEECTTSCEEECCSSCC
T ss_pred CeEEEEEcCCCcCchhhhhccCC---CCceEEEeCCCCEEEEecC--CccEEEEeccCCCCCccceeccCccEEccCCcc
Confidence 488999998753 233333211 112 444567876655544 78999999886 1111111111 11111
Q ss_pred ccceEEeeCCe----EEEEEeCCEEEEEeCCC
Q 039590 303 QRPLGFWKKGA----FFVVSTSGHLLLYDPNT 330 (379)
Q Consensus 303 ~~~~~~~~~~~----il~~~~~~~l~~yd~~t 330 (379)
..-+++..++. ++....++.+..|+++.
T Consensus 388 v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 388 VSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred eEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 22344444554 67767788899999864
No 127
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=59.01 E-value=97 Score=27.44 Aligned_cols=64 Identities=13% Similarity=0.120 Sum_probs=37.4
Q ss_pred CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECC-CCCcccceEEeeCCe-EEEEE-eCCEEEEEeCCCCc
Q 039590 265 NHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGP-FVGVQRPLGFWKKGA-FFVVS-TSGHLLLYDPNTQE 332 (379)
Q Consensus 265 ~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~-~~~~~~~~~~~~~~~-il~~~-~~~~l~~yd~~t~~ 332 (379)
+|.+.+++.. +..+.||-+.... ....+.. ...-..-+.+..++. +++.. .++.+.+||+++++
T Consensus 258 ~~~~l~~~~~--dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 258 YGKYVIAGHV--SGVITVHNVFSKE--QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE 324 (420)
T ss_dssp TTEEEEEEET--TSCEEEEETTTCC--EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred CCCEEEEEcC--CCeEEEEECCCCc--eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 5666666655 6779999887622 2222321 112223344555665 55554 47899999998864
No 128
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=58.82 E-value=75 Score=26.11 Aligned_cols=184 Identities=11% Similarity=0.042 Sum_probs=89.8
Q ss_pred CCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCC-Cccc
Q 039590 118 NDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRT-NSWR 196 (379)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~-~~W~ 196 (379)
...++++|+.+++...+..... ....+.+.|..+ +-++. .+ ..+.+++..+ +...
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~~----------~v~~~~~spdg~-~l~~~-----~~--------~~i~~~d~~~~~~~~ 76 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTPE----------LFEAPNWSPDGK-YLLLN-----SE--------GLLYRLSLAGDPSPE 76 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEESS----------CCEEEEECTTSS-EEEEE-----ET--------TEEEEEESSSCCSCE
T ss_pred ceeEEEEeCCCCceeeeccCCc----------ceEeeEECCCCC-EEEEE-----cC--------CeEEEEeCCCCCCce
Confidence 3479999999998776543221 124555555433 32221 11 1345898888 7665
Q ss_pred ccccccCCcceeeeccccEEECceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEEE-ECCeEEE-EEEc
Q 039590 197 DLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGV-YNHSLCV-LLSH 274 (379)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~-~~G~L~l-~~~~ 274 (379)
.+.. .........-...-+|...............|..+|..+.....+..... ...+.. -+|+..+ ....
T Consensus 77 ~~~~---~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~spdg~~l~~~~~~ 149 (297)
T 2ojh_A 77 KVDT---GFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLP----SYWHGWSPDGKSFTYCGIR 149 (297)
T ss_dssp ECCC---TTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSS----EEEEEECTTSSEEEEEEEE
T ss_pred Eecc---ccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCC----ccceEECCCCCEEEEEECC
Confidence 5441 11001111111222454333333111224578888887766544433221 112232 2565444 4444
Q ss_pred CCCCEEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEE-EEe---CCEEEEEeCCCCcEEEeE
Q 039590 275 NIENYYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFV-VST---SGHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 275 ~~~~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~-~~~---~~~l~~yd~~t~~~~~v~ 337 (379)
...+.||.++. ... ..+.........+.+..+|..++ ... ...++.+++.++..+.+.
T Consensus 150 --~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 150 --DQVFDIYSMDIDSGVE---TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT 213 (297)
T ss_dssp --TTEEEEEEEETTTCCE---EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC
T ss_pred --CCceEEEEEECCCCcc---eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe
Confidence 56789999864 222 22222222122344445666444 332 346777777777776654
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=58.59 E-value=1.2e+02 Score=28.60 Aligned_cols=196 Identities=11% Similarity=0.070 Sum_probs=98.7
Q ss_pred eecceEEEecCCCCeEEEEecCCCceec-CCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeE
Q 039590 106 PFDGIFCIHGPTNDRLILCNLETKESRT-LPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAH 184 (379)
Q Consensus 106 s~~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~ 184 (379)
+-+|.++........+.|+|+.|++... ++... ...++.+++..+ |-.+.- .+ ..
T Consensus 146 ~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~-----------~~~~v~~spdg~-~l~v~~----~d------~~-- 201 (543)
T 1nir_A 146 DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-----------AVHISRMSASGR-YLLVIG----RD------AR-- 201 (543)
T ss_dssp CGGGEEEEEEGGGTEEEEEETTTCCEEEEEECST-----------TEEEEEECTTSC-EEEEEE----TT------SE--
T ss_pred CCCCEEEEEEcCCCeEEEEECCCceEEEEEecCc-----------ccceEEECCCCC-EEEEEC----CC------Ce--
Confidence 3467777775555579999999997643 32111 124556666433 322221 11 13
Q ss_pred EEEEEc--CCCcccccccccCCcceeeeccccEEE----CceEeeEeecCCCCccEEEEEECCCceE-EEecCCCCC---
Q 039590 185 VAMYNL--RTNSWRDLKSFKSDHYVMSFWSGSLYV----DGVCYWLSRFRNNDHAVILSFHLGNDVF-EEVQEPYIP--- 254 (379)
Q Consensus 185 ~~vyss--~~~~W~~~~~~~~~~~~~~~~~~~v~~----~G~lywl~~~~~~~~~~i~~fD~~~e~~-~~i~~P~~~--- 254 (379)
+.+|+. .+++ .+..++....+.. -.+.- +|..-+.+... ...|..+|..+.+- ..++.+...
T Consensus 202 V~v~D~~~~t~~--~~~~i~~g~~p~~---va~sp~~~~dg~~l~v~~~~---~~~v~v~D~~t~~~~~~i~~~g~~~~~ 273 (543)
T 1nir_A 202 IDMIDLWAKEPT--KVAEIKIGIEARS---VESSKFKGYEDRYTIAGAYW---PPQFAIMDGETLEPKQIVSTRGMTVDT 273 (543)
T ss_dssp EEEEETTSSSCE--EEEEEECCSEEEE---EEECCSTTCTTTEEEEEEEE---SSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred EEEEECcCCCCc--EEEEEecCCCcce---EEeCCCcCCCCCEEEEEEcc---CCeEEEEeccccccceeecccCcccCc
Confidence 348888 4432 2221111111111 11122 56543434322 24788999887654 445543210
Q ss_pred -----CCCCcEEEEE-CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEEEEe--CCEEEEE
Q 039590 255 -----QSEPTIIGVY-NHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST--SGHLLLY 326 (379)
Q Consensus 255 -----~~~~~~l~~~-~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~--~~~l~~y 326 (379)
......++.. +|...++... ....+.+|-..+..-.++..++. ....+-+.+..+|+.++... ++.+.++
T Consensus 274 ~~~~~~~~v~~i~~s~~~~~~~vs~~-~~g~i~vvd~~~~~~l~~~~i~~-~~~~~~~~~spdg~~l~va~~~~~~v~v~ 351 (543)
T 1nir_A 274 QTYHPEPRVAAIIASHEHPEFIVNVK-ETGKVLLVNYKDIDNLTVTSIGA-APFLHDGGWDSSHRYFMTAANNSNKVAVI 351 (543)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEET-TTTEEEEEECTTSSSCEEEEEEC-CSSCCCEEECTTSCEEEEEEGGGTEEEEE
T ss_pred cccccCCceEEEEECCCCCEEEEEEC-CCCeEEEEEecCCCcceeEEecc-CcCccCceECCCCCEEEEEecCCCeEEEE
Confidence 0011134433 3554455544 36677777776521112233432 12234456667787655543 6799999
Q ss_pred eCCCCcEEE
Q 039590 327 DPNTQEMRD 335 (379)
Q Consensus 327 d~~t~~~~~ 335 (379)
|.+++++..
T Consensus 352 D~~tg~l~~ 360 (543)
T 1nir_A 352 DSKDRRLSA 360 (543)
T ss_dssp ETTTTEEEE
T ss_pred ECCCCeEEE
Confidence 999998765
No 130
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=58.40 E-value=1e+02 Score=27.60 Aligned_cols=188 Identities=10% Similarity=0.033 Sum_probs=90.2
Q ss_pred cceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEE
Q 039590 108 DGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAM 187 (379)
Q Consensus 108 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~v 187 (379)
.+.|++.... .+...++.+++...+-... ....++.+|+..+...+.-+ . .-.++.
T Consensus 87 ~~~l~~~~~~--~I~~i~~~~~~~~~~~~~~----------~~~~gl~~d~~~~~ly~~D~----~--------~~~I~r 142 (386)
T 3v65_B 87 EPVLLFANRI--DIRQVLPHRSEYTLLLNNL----------ENAIALDFHHRRELVFWSDV----T--------LDRILR 142 (386)
T ss_dssp CCEEEEECBS--CEEEECTTSCCCEEEECSC----------SCEEEEEEETTTTEEEEEET----T--------TTEEEE
T ss_pred cceeEeecCc--cceeeccCCCcEEEEecCC----------CccEEEEEecCCCeEEEEeC----C--------CCcEEE
Confidence 3445444332 2666666665544332111 12477888876554322211 1 113336
Q ss_pred EEcCCCcccccccccCCcceeeeccccEEE---CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEEEE
Q 039590 188 YNLRTNSWRDLKSFKSDHYVMSFWSGSLYV---DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGVY 264 (379)
Q Consensus 188 yss~~~~W~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~~ 264 (379)
++..+...+.+.. ... . ...++.+ +|.|||..... ..|..+|+....-..+- .... ..+..|+.-
T Consensus 143 ~~~~g~~~~~~~~--~~~---~-~p~glavd~~~g~lY~~d~~~----~~I~~~~~dg~~~~~l~-~~~l-~~P~giavd 210 (386)
T 3v65_B 143 ANLNGSNVEEVVS--TGL---E-SPGGLAVDWVHDKLYWTDSGT----SRIEVANLDGAHRKVLL-WQSL-EKPRAIALH 210 (386)
T ss_dssp EETTSCCEEEEEC--SSC---S-CCCCEEEETTTTEEEEEETTT----TEEEECBTTSCSCEEEE-CSSC-SCEEEEEEE
T ss_pred EecCCCCcEEEEe--CCC---C-CccEEEEEeCCCeEEEEcCCC----CeEEEEeCCCCceEEee-cCCC-CCCcEEEEE
Confidence 6666654443320 011 0 1223333 68999987654 58899998765433322 1111 112245543
Q ss_pred --CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccc--eEEe-eCCeEEEEEe-CCEEEEEeCCCCcEEEe
Q 039590 265 --NHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRP--LGFW-KKGAFFVVST-SGHLLLYDPNTQEMRDL 336 (379)
Q Consensus 265 --~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~--~~~~-~~~~il~~~~-~~~l~~yd~~t~~~~~v 336 (379)
+|.|++.... ....|...-++. +-.+.. +. ..+..| +.+. .++.||+... .+.+..+|+.....+.+
T Consensus 211 p~~g~ly~td~~-~~~~I~r~~~dG-~~~~~~-~~--~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~ 283 (386)
T 3v65_B 211 PMEGTIYWTDWG-NTPRIEASSMDG-SGRRII-AD--THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 283 (386)
T ss_dssp TTTTEEEEEECS-SSCEEEEEETTS-CSCEEE-EC--SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEE
T ss_pred cCCCeEEEeccC-CCCEEEEEeCCC-CCcEEE-EE--CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEE
Confidence 6778876644 113333333332 211111 11 123344 4444 3456666654 56899999876554443
No 131
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=58.23 E-value=1.8e+02 Score=30.42 Aligned_cols=98 Identities=12% Similarity=0.122 Sum_probs=54.8
Q ss_pred cEEEEEECCCceEEE-ecCCCCCCCCCcEEE-EECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECC--------CC--
Q 039590 233 AVILSFHLGNDVFEE-VQEPYIPQSEPTIIG-VYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGP--------FV-- 300 (379)
Q Consensus 233 ~~i~~fD~~~e~~~~-i~~P~~~~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~--------~~-- 300 (379)
..|..+|+.+.+... +..... .-..+. .-+|.+.+.+.. +..+.+|-+....-........ ..
T Consensus 723 ~~v~vwd~~~~~~~~~~~~h~~---~v~~~~~sp~~~~l~s~s~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1249)
T 3sfz_A 723 FFLKLWDLNQKECRNTMFGHTN---SVNHCRFSPDDELLASCSA--DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 797 (1249)
T ss_dssp SCEEEEETTSSSEEEEECCCSS---CEEEEEECSSTTEEEEEES--SSEEEEEEGGGTEEEEEEECCCCC--------CC
T ss_pred CeEEEEECCCcchhheecCCCC---CEEEEEEecCCCEEEEEEC--CCeEEEEeCCCCcccceecccccccccCCccccc
Confidence 468888888765432 221111 111333 235666666655 6789999887632222221110 00
Q ss_pred -CcccceEEeeCCeEEEEEeCCEEEEEeCCCCcEEE
Q 039590 301 -GVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRD 335 (379)
Q Consensus 301 -~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~~ 335 (379)
.....+.+..+|..++...++.+..||..++....
T Consensus 798 ~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~ 833 (1249)
T 3sfz_A 798 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLA 833 (1249)
T ss_dssp CCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEE
T ss_pred cceEEEEEECCCCCEEEEEcCCcEEEEEecCCCcee
Confidence 01222344567788777778999999998877554
No 132
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=57.26 E-value=92 Score=26.65 Aligned_cols=110 Identities=9% Similarity=-0.045 Sum_probs=54.9
Q ss_pred Cce-EeeEeecCCCCccEEEEEECCCceEE-EecCCCCCCCCCcEEE-EECCeEEEEEEcCCCCEEEEEEEcCCeEEEEE
Q 039590 218 DGV-CYWLSRFRNNDHAVILSFHLGNDVFE-EVQEPYIPQSEPTIIG-VYNHSLCVLLSHNIENYYDIWVMKDKCWIKQL 294 (379)
Q Consensus 218 ~G~-lywl~~~~~~~~~~i~~fD~~~e~~~-~i~~P~~~~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~ 294 (379)
+|. +|...... ...|..+|+.+.+.. .++.+.. ... .+. .-+|+..++... ...+.+|-+....=....
T Consensus 151 dg~~l~~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~-~~~--~~~~s~dg~~l~~~~~--~~~i~~~d~~~~~~~~~~ 222 (353)
T 3vgz_A 151 ATNTVYISGIGK---ESVIWVVDGGNIKLKTAIQNTGK-MST--GLALDSEGKRLYTTNA--DGELITIDTADNKILSRK 222 (353)
T ss_dssp TTTEEEEEEESS---SCEEEEEETTTTEEEEEECCCCT-TCC--CCEEETTTTEEEEECT--TSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEecCC---CceEEEEcCCCCceEEEecCCCC-ccc--eEEECCCCCEEEEEcC--CCeEEEEECCCCeEEEEE
Confidence 554 55444222 247999999876653 3332211 111 222 335554334333 456777766552211122
Q ss_pred EECCC--CCcccceEEeeCCeEEEE-Ee-CCEEEEEeCCCCcEEE
Q 039590 295 SVGPF--VGVQRPLGFWKKGAFFVV-ST-SGHLLLYDPNTQEMRD 335 (379)
Q Consensus 295 ~i~~~--~~~~~~~~~~~~~~il~~-~~-~~~l~~yd~~t~~~~~ 335 (379)
..... .....-+.+..+|+.++. .. ++.+..||+++++...
T Consensus 223 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 267 (353)
T 3vgz_A 223 KLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA 267 (353)
T ss_dssp ECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred EcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 22111 111223556666764444 33 4799999999887653
No 133
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=56.60 E-value=74 Score=31.26 Aligned_cols=115 Identities=15% Similarity=0.153 Sum_probs=61.8
Q ss_pred ccccEEECceEeeEeecCCCCccEEEEEECCCc--eEEEe-cCCCC-----C-CCCCcEEEEECCeEEEEEEcCCCCEEE
Q 039590 211 WSGSLYVDGVCYWLSRFRNNDHAVILSFHLGND--VFEEV-QEPYI-----P-QSEPTIIGVYNHSLCVLLSHNIENYYD 281 (379)
Q Consensus 211 ~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e--~~~~i-~~P~~-----~-~~~~~~l~~~~G~L~l~~~~~~~~~i~ 281 (379)
....+..+|.+|..+..+ .|.++|..+. .|+.- ..+.. . ......++..+|+|++... ...+.
T Consensus 70 ~~~P~v~~g~vyv~~~~~-----~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~---dg~l~ 141 (677)
T 1kb0_A 70 EATPVVVDGIMYVSASWS-----VVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---DGRLI 141 (677)
T ss_dssp CCCCEEETTEEEEECGGG-----CEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT---TSEEE
T ss_pred eeCCEEECCEEEEECCCC-----eEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC---CCEEE
Confidence 345688999999987654 7999998654 56542 11110 0 0011134456676665432 23333
Q ss_pred EEEEcC--CeEEEEEEECCC--CCc-ccceEEeeCCeEEEEEe------CCEEEEEeCCCCcEEE
Q 039590 282 IWVMKD--KCWIKQLSVGPF--VGV-QRPLGFWKKGAFFVVST------SGHLLLYDPNTQEMRD 335 (379)
Q Consensus 282 iW~l~~--~~W~~~~~i~~~--~~~-~~~~~~~~~~~il~~~~------~~~l~~yd~~t~~~~~ 335 (379)
.+-.+. ..|......+.. ..+ ..|+. .++.+++... ++.+++||.+|++...
T Consensus 142 alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 142 ALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp EEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred EEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 333333 467643210110 111 23332 2456666543 4789999999998664
No 134
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=55.87 E-value=1.2e+02 Score=29.93 Aligned_cols=114 Identities=16% Similarity=0.198 Sum_probs=61.9
Q ss_pred cccEEECceEeeEeecCCCCccEEEEEECCC--ceEEEe-cCCCCC------CCCCcEEEEECCeEEEEEEcCCCCEEEE
Q 039590 212 SGSLYVDGVCYWLSRFRNNDHAVILSFHLGN--DVFEEV-QEPYIP------QSEPTIIGVYNHSLCVLLSHNIENYYDI 282 (379)
Q Consensus 212 ~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~--e~~~~i-~~P~~~------~~~~~~l~~~~G~L~l~~~~~~~~~i~i 282 (379)
...+..+|.+|..+..+ .|.++|..+ +.|+.- ..+... ......++..+|+|++... ...+..
T Consensus 64 ~~P~v~~g~vyv~~~~~-----~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~---dg~l~A 135 (689)
T 1yiq_A 64 ATPIVVDGVMYTTGPFS-----VVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL---DGRLEA 135 (689)
T ss_dssp CCCEEETTEEEEECGGG-----CEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---TSEEEE
T ss_pred ecCEEECCEEEEEcCCC-----eEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc---CCEEEE
Confidence 45678999999987654 799999764 557642 222110 0001134456677665432 233333
Q ss_pred EEEcC--CeEEEEEEECCCC--Cc-ccceEEeeCCeEEEEEe------CCEEEEEeCCCCcEEE
Q 039590 283 WVMKD--KCWIKQLSVGPFV--GV-QRPLGFWKKGAFFVVST------SGHLLLYDPNTQEMRD 335 (379)
Q Consensus 283 W~l~~--~~W~~~~~i~~~~--~~-~~~~~~~~~~~il~~~~------~~~l~~yd~~t~~~~~ 335 (379)
+-.+. ..|......+... .+ ..|+. .++.+++... ++.+++||.+|++...
T Consensus 136 lDa~TG~~~W~~~~~~~~~~~~~~~~sP~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 136 IDAKTGQRAWSVDTRADHKRSYTITGAPRV--VNGKVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp EETTTCCEEEEEECCSCTTSCCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred EECCCCCEeeeecCcCCCCCCccccCCcEE--ECCEEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 33333 5676543212111 11 23432 2556666432 4689999999998654
No 135
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=55.58 E-value=98 Score=26.44 Aligned_cols=95 Identities=8% Similarity=0.061 Sum_probs=49.4
Q ss_pred cEEEEEECCCce--EEEecCCCCCCCCCc-EEE-----EECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCccc
Q 039590 233 AVILSFHLGNDV--FEEVQEPYIPQSEPT-IIG-----VYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQR 304 (379)
Q Consensus 233 ~~i~~fD~~~e~--~~~i~~P~~~~~~~~-~l~-----~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~ 304 (379)
..|..+|+.+.. ...+..+........ .+. ..+|.+.+++.. +..+.+|-+....= ....... .-..
T Consensus 139 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~--~~~~~~~-~~v~ 213 (357)
T 3i2n_A 139 GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD--NGDIKLFDLRNMAL--RWETNIK-NGVC 213 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEET--TSEEEEEETTTTEE--EEEEECS-SCEE
T ss_pred CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEcc--CCeEEEEECccCce--eeecCCC-CceE
Confidence 478889988764 344444332211122 222 146777666665 67899998886221 1111111 1112
Q ss_pred ceEEee---CCeEEEE-EeCCEEEEEeCCCCc
Q 039590 305 PLGFWK---KGAFFVV-STSGHLLLYDPNTQE 332 (379)
Q Consensus 305 ~~~~~~---~~~il~~-~~~~~l~~yd~~t~~ 332 (379)
-+.+.. ++..++. ..++.+.+||+++++
T Consensus 214 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 214 SLEFDRKDISMNKLVATSLEGKFHVFDMRTQH 245 (357)
T ss_dssp EEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred EEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence 233333 4554444 447788888886643
No 136
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=55.25 E-value=99 Score=26.40 Aligned_cols=104 Identities=11% Similarity=0.017 Sum_probs=58.0
Q ss_pred CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEEE-ECCeEEEEEEcCCCCEEEEEEEc--CCeEEEEE
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGV-YNHSLCVLLSHNIENYYDIWVMK--DKCWIKQL 294 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~--~~~W~~~~ 294 (379)
+|.+||..... ..|..+|..+..-..+..+.. ...++. -+|+|++.... .....|+.++ +.....+.
T Consensus 42 ~g~lyv~d~~~----~~I~~~d~~g~~~~~~~~~~~----p~gia~~~dG~l~vad~~--~~~~~v~~~d~~~g~~~~~~ 111 (306)
T 2p4o_A 42 DGTIFVTNHEV----GEIVSITPDGNQQIHATVEGK----VSGLAFTSNGDLVATGWN--ADSIPVVSLVKSDGTVETLL 111 (306)
T ss_dssp TSCEEEEETTT----TEEEEECTTCCEEEEEECSSE----EEEEEECTTSCEEEEEEC--TTSCEEEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCC----CeEEEECCCCceEEEEeCCCC----ceeEEEcCCCcEEEEecc--CCcceEEEEcCCCCeEEEEE
Confidence 78899987443 489999988764444444421 124443 36888776644 2234556554 24444444
Q ss_pred EECCCCCcccceEEeeCCeEEEEEe-CCEEEEEeCCCCc
Q 039590 295 SVGPFVGVQRPLGFWKKGAFFVVST-SGHLLLYDPNTQE 332 (379)
Q Consensus 295 ~i~~~~~~~~~~~~~~~~~il~~~~-~~~l~~yd~~t~~ 332 (379)
.+... ....-...+.++.+++... .+.++.+|+.+++
T Consensus 112 ~~~~~-~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~ 149 (306)
T 2p4o_A 112 TLPDA-IFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS 149 (306)
T ss_dssp ECTTC-SCEEEEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred eCCCc-cccCcccccCCCcEEEEECCCCeEEEEeCCCCc
Confidence 43211 1112233344455555543 6789999987653
No 137
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=55.21 E-value=95 Score=26.20 Aligned_cols=64 Identities=13% Similarity=0.221 Sum_probs=39.6
Q ss_pred CeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeC--CeEEEE-EeCCEEEEEeCCCC
Q 039590 266 HSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKK--GAFFVV-STSGHLLLYDPNTQ 331 (379)
Q Consensus 266 G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~--~~il~~-~~~~~l~~yd~~t~ 331 (379)
|.+.+.+.. +..+.||-++...|.....+.....-..-+.+..+ +.+++. ..++.+.+||++++
T Consensus 67 g~~l~s~s~--D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~ 133 (297)
T 2pm7_B 67 GTILASCSY--DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN 133 (297)
T ss_dssp CSEEEEEET--TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred CCEEEEEcC--CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence 677666665 78999999987666665555422221222334333 555444 44778999998765
No 138
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=55.20 E-value=1.1e+02 Score=26.82 Aligned_cols=93 Identities=5% Similarity=-0.093 Sum_probs=44.7
Q ss_pred cEEEEEECCCceE-EEecCCCCCCCCCcEEEEE-CC-eEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEe
Q 039590 233 AVILSFHLGNDVF-EEVQEPYIPQSEPTIIGVY-NH-SLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFW 309 (379)
Q Consensus 233 ~~i~~fD~~~e~~-~~i~~P~~~~~~~~~l~~~-~G-~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~ 309 (379)
..|..+|+.+.+- ..+..... .-..+... +| .+.+.+.. +..+.||-+... +..+.........-+.+.
T Consensus 237 g~v~~wd~~~~~~~~~~~~h~~---~v~~v~fsp~g~~~lasgs~--D~~i~vwd~~~~---~~~~~~~H~~~V~~v~~s 308 (344)
T 4gqb_B 237 GTVSLVDTKSTSCVLSSAVHSQ---CVTGLVFSPHSVPFLASLSE--DCSLAVLDSSLS---ELFRSQAHRDFVRDATWS 308 (344)
T ss_dssp SEEEEEESCC--CCEEEECCSS---CEEEEEECSSSSCCEEEEET--TSCEEEECTTCC---EEEEECCCSSCEEEEEEC
T ss_pred CcEEEEECCCCcEEEEEcCCCC---CEEEEEEccCCCeEEEEEeC--CCeEEEEECCCC---cEEEEcCCCCCEEEEEEe
Confidence 3677888876542 22222211 11133332 44 44444544 678999965542 122332222222334444
Q ss_pred eCCe-EEEE-EeCCEEEEEeCCCCcE
Q 039590 310 KKGA-FFVV-STSGHLLLYDPNTQEM 333 (379)
Q Consensus 310 ~~~~-il~~-~~~~~l~~yd~~t~~~ 333 (379)
.++. ++.. ..++.+.+|++.++.+
T Consensus 309 p~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 309 PLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp SSSTTEEEEEETTSCEEEEECCC---
T ss_pred CCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 4554 5443 3478999999987654
No 139
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=55.19 E-value=97 Score=30.60 Aligned_cols=58 Identities=12% Similarity=0.208 Sum_probs=34.4
Q ss_pred cccEEE---CceEeeEeecCCCCccEEEEEECCCceEEEe-cCCCCCCCCCcEEEEECCeEEEEEEc
Q 039590 212 SGSLYV---DGVCYWLSRFRNNDHAVILSFHLGNDVFEEV-QEPYIPQSEPTIIGVYNHSLCVLLSH 274 (379)
Q Consensus 212 ~~~v~~---~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~l~~~~G~L~l~~~~ 274 (379)
..++.+ +|.|||..... ..|.++|+....-+.+ ..+... .....|+..++.|+++...
T Consensus 542 PnGlavd~~~~~LY~aD~~~----~~I~~~d~dG~~~~~~~~~~~~~-~~P~glavd~~~lywtd~~ 603 (699)
T 1n7d_A 542 PNGITLDLLSGRLYWVDSKL----HSISSIDVNGGNRKTILEDEKRL-AHPFSLAVFEDKVFWTDII 603 (699)
T ss_dssp CCCEEECTTTCCEEEEETTT----TEEEEECSSSSCCEEECCCSSSC-SSCCCCEEETTEEEEECST
T ss_pred ccEEEEeccCCEEEEEecCC----CeEEEEccCCCceEEEEecCCcC-CCceEeEEECCEEEEEeCC
Confidence 345665 48999987553 6899999975433333 222111 2233556667777776643
No 140
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=53.42 E-value=1.1e+02 Score=26.41 Aligned_cols=94 Identities=9% Similarity=0.121 Sum_probs=52.2
Q ss_pred cEEEEEECCCceEEE-ecCCCCCCCCCcEEEE-ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEee
Q 039590 233 AVILSFHLGNDVFEE-VQEPYIPQSEPTIIGV-YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWK 310 (379)
Q Consensus 233 ~~i~~fD~~~e~~~~-i~~P~~~~~~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~ 310 (379)
..|..+|+.+.+... +..... .-..+.. -+|.+.+.+.. +..+.+|-+.... ....+.....-..-+.+..
T Consensus 164 ~~i~~wd~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~sg~~--d~~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p 236 (340)
T 1got_B 164 TTCALWDIETGQQTTTFTGHTG---DVMSLSLAPDTRLFVSGAC--DASAKLWDVREGM--CRQTFTGHESDINAICFFP 236 (340)
T ss_dssp SCEEEEETTTTEEEEEECCCSS---CEEEEEECTTSSEEEEEET--TSCEEEEETTTCS--EEEEECCCSSCEEEEEECT
T ss_pred CcEEEEECCCCcEEEEEcCCCC---ceEEEEECCCCCEEEEEeC--CCcEEEEECCCCe--eEEEEcCCcCCEEEEEEcC
Confidence 368888988765432 222111 1113332 35666666665 6789999887521 2233332222223344555
Q ss_pred CCeEEEEE-eCCEEEEEeCCCCcE
Q 039590 311 KGAFFVVS-TSGHLLLYDPNTQEM 333 (379)
Q Consensus 311 ~~~il~~~-~~~~l~~yd~~t~~~ 333 (379)
++..++.. .++.+.+||+++++.
T Consensus 237 ~~~~l~s~s~d~~v~iwd~~~~~~ 260 (340)
T 1got_B 237 NGNAFATGSDDATCRLFDLRADQE 260 (340)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCcE
Confidence 66665554 477899999987653
No 141
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=53.23 E-value=1.1e+02 Score=26.37 Aligned_cols=97 Identities=13% Similarity=0.046 Sum_probs=55.0
Q ss_pred cEEEEEECCCceEEEecCCCCCCCCCcEEEE-ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECC-CCCcccceEEee
Q 039590 233 AVILSFHLGNDVFEEVQEPYIPQSEPTIIGV-YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGP-FVGVQRPLGFWK 310 (379)
Q Consensus 233 ~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~-~~~~~~~~~~~~ 310 (379)
..|..+|+.+.+-..+....... .-..+.. -+|.+.+.+.. +..+.||-+....-. ...+.. ...-..-+.+..
T Consensus 149 g~i~~wd~~~~~~~~~~~~~~~~-~i~~~~~~pdg~~lasg~~--dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~fs~ 224 (343)
T 3lrv_A 149 GTIGFQSYEDDSQYIVHSAKSDV-EYSSGVLHKDSLLLALYSP--DGILDVYNLSSPDQA-SSRFPVDEEAKIKEVKFAD 224 (343)
T ss_dssp CCEEEEESSSSCEEEEECCCSSC-CCCEEEECTTSCEEEEECT--TSCEEEEESSCTTSC-CEECCCCTTSCEEEEEECT
T ss_pred CcEEEEECCCCcEEEEEecCCCC-ceEEEEECCCCCEEEEEcC--CCEEEEEECCCCCCC-ccEEeccCCCCEEEEEEeC
Confidence 47888998877664332111111 1113442 35676666655 778999988862111 022222 122123345556
Q ss_pred CCeEEEEEeCCEEEEEeCCCCcE
Q 039590 311 KGAFFVVSTSGHLLLYDPNTQEM 333 (379)
Q Consensus 311 ~~~il~~~~~~~l~~yd~~t~~~ 333 (379)
++..++...++.+.+||+++.+.
T Consensus 225 ~g~~l~s~~~~~v~iwd~~~~~~ 247 (343)
T 3lrv_A 225 NGYWMVVECDQTVVCFDLRKDVG 247 (343)
T ss_dssp TSSEEEEEESSBEEEEETTSSTT
T ss_pred CCCEEEEEeCCeEEEEEcCCCCc
Confidence 77777776677999999988653
No 142
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=53.07 E-value=1e+02 Score=25.90 Aligned_cols=137 Identities=12% Similarity=0.048 Sum_probs=78.5
Q ss_pred EEEEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecCCCCccEEEEEECCCceE-EEecCCCCCCCCCcEEEE
Q 039590 185 VAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVF-EEVQEPYIPQSEPTIIGV 263 (379)
Q Consensus 185 ~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~-~~i~~P~~~~~~~~~l~~ 263 (379)
+.+++.++++=...- .++...+...-...++.+|-++... ..+..||..+.+- ..++.|.. +..|+.
T Consensus 45 v~~vD~~tgkv~~~~----~l~~~~fgeGi~~~~~~ly~ltw~~----~~v~v~D~~tl~~~~ti~~~~~----Gwglt~ 112 (243)
T 3mbr_X 45 VRKVDLETGRILQRA----EVPPPYFGAGIVAWRDRLIQLTWRN----HEGFVYDLATLTPRARFRYPGE----GWALTS 112 (243)
T ss_dssp EEEEETTTCCEEEEE----ECCTTCCEEEEEEETTEEEEEESSS----SEEEEEETTTTEEEEEEECSSC----CCEEEE
T ss_pred EEEEECCCCCEEEEE----eCCCCcceeEEEEeCCEEEEEEeeC----CEEEEEECCcCcEEEEEeCCCC----ceEEee
Confidence 448888887543222 1111112122345678999987665 6899999987554 55676642 236666
Q ss_pred ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCC---Cccc--ceEEeeCCeEEEEEe-CCEEEEEeCCCCcEEE-e
Q 039590 264 YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFV---GVQR--PLGFWKKGAFFVVST-SGHLLLYDPNTQEMRD-L 336 (379)
Q Consensus 264 ~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~---~~~~--~~~~~~~~~il~~~~-~~~l~~yd~~t~~~~~-v 336 (379)
-+++|++... .. .|++++-..=..+.+|.... .+.. -+. +.+|+++.... ++.+...|++|+++.. +
T Consensus 113 dg~~L~vSdg---s~--~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe-~~~G~lyanvw~s~~I~vIDp~tG~V~~~i 186 (243)
T 3mbr_X 113 DDSHLYMSDG---TA--VIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE-WVNGELLANVWLTSRIARIDPASGKVVAWI 186 (243)
T ss_dssp CSSCEEEECS---SS--EEEEECTTTCCEEEEEECEETTEECCCEEEEE-EETTEEEEEETTTTEEEEECTTTCBEEEEE
T ss_pred CCCEEEEECC---CC--eEEEEeCCCCeEEEEEEEccCCcccccceeeE-EeCCEEEEEECCCCeEEEEECCCCCEEEEE
Confidence 6667777653 23 36777752222333333211 0111 122 33678775553 7799999999999754 5
Q ss_pred EEe
Q 039590 337 GVT 339 (379)
Q Consensus 337 ~~~ 339 (379)
.+.
T Consensus 187 dl~ 189 (243)
T 3mbr_X 187 DLQ 189 (243)
T ss_dssp ECG
T ss_pred ECC
Confidence 544
No 143
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=52.67 E-value=1.3e+02 Score=27.05 Aligned_cols=186 Identities=10% Similarity=0.047 Sum_probs=92.3
Q ss_pred CeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCccccc
Q 039590 119 DRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDL 198 (379)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 198 (379)
..++++|..|++.+.+..... ....+.+.|.. .+-++.. . .+. ...+++++..++..+.+
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~~----------~~~~~~~spdg-~~la~~~-~--~~g------~~~i~~~d~~~~~~~~l 262 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFPR----------HNGAPAFSPDG-SKLAFAL-S--KTG------SLNLYVMDLASGQIRQV 262 (415)
T ss_dssp CEEEEEETTTCCEEEEECCSS----------CEEEEEECTTS-SEEEEEE-C--TTS------SCEEEEEETTTCCEEEC
T ss_pred cEEEEEECCCCcEEEeecCCC----------cccCEEEcCCC-CEEEEEE-e--cCC------CceEEEEECCCCCEEeC
Confidence 479999999998776543221 13455555543 2322222 1 111 23455889888776655
Q ss_pred ccccCCcceeeeccccEEECce-EeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEE-EECCeEEEEEEcC-
Q 039590 199 KSFKSDHYVMSFWSGSLYVDGV-CYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIG-VYNHSLCVLLSHN- 275 (379)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~-~~~G~L~l~~~~~- 275 (379)
........... ..-+|. ++...... ....|..+|+.+.+...+..... ....+. .-+|+..++....
T Consensus 263 ~~~~~~~~~~~-----~spdg~~l~~~s~~~--g~~~i~~~d~~~~~~~~l~~~~~---~~~~~~~spdG~~l~~~~~~~ 332 (415)
T 2hqs_A 263 TDGRSNNTEPT-----WFPDSQNLAFTSDQA--GRPQVYKVNINGGAPQRITWEGS---QNQDADVSSDGKFMVMVSSNG 332 (415)
T ss_dssp CCCSSCEEEEE-----ECTTSSEEEEEECTT--SSCEEEEEETTSSCCEECCCSSS---EEEEEEECTTSSEEEEEEECS
T ss_pred cCCCCcccceE-----ECCCCCEEEEEECCC--CCcEEEEEECCCCCEEEEecCCC---cccCeEECCCCCEEEEEECcC
Confidence 41110000011 111454 44443221 23478888988776544332211 111233 2366644444332
Q ss_pred CCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEE-EEeCC---EEEEEeCCCCcEEEeEE
Q 039590 276 IENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFV-VSTSG---HLLLYDPNTQEMRDLGV 338 (379)
Q Consensus 276 ~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~-~~~~~---~l~~yd~~t~~~~~v~~ 338 (379)
....+.+|-++..... .+.... ....+.+..+|..++ ...++ .++.+|++++..+.+.-
T Consensus 333 g~~~i~~~d~~~~~~~---~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 333 GQQHIAKQDLATGGVQ---VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA 395 (415)
T ss_dssp SCEEEEEEETTTCCEE---ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC
T ss_pred CceEEEEEECCCCCEE---EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeC
Confidence 2345666666543322 222111 223344556676544 44433 79999999888887763
No 144
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=52.41 E-value=65 Score=27.48 Aligned_cols=109 Identities=6% Similarity=-0.032 Sum_probs=58.7
Q ss_pred Cc-eEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEE-EECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEE
Q 039590 218 DG-VCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIG-VYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLS 295 (379)
Q Consensus 218 ~G-~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~ 295 (379)
+| .+||..... ..|..+|.. .+.+.+..|... ...+. ..+|+|.+.... ...+.+|-.+ ........
T Consensus 55 ~g~~l~~~d~~~----~~i~~~~~~-g~~~~~~~~~~~---~~gl~~d~dG~l~v~~~~--~~~v~~~~~~-g~~~~~~~ 123 (305)
T 3dr2_A 55 AQRTLVWSDLVG----RRVLGWRED-GTVDVLLDATAF---TNGNAVDAQQRLVHCEHG--RRAITRSDAD-GQAHLLVG 123 (305)
T ss_dssp GGTEEEEEETTT----TEEEEEETT-SCEEEEEESCSC---EEEEEECTTSCEEEEETT--TTEEEEECTT-SCEEEEEC
T ss_pred CCCEEEEEECCC----CEEEEEeCC-CCEEEEeCCCCc---cceeeECCCCCEEEEECC--CCEEEEECCC-CCEEEEEe
Confidence 44 489987654 579999984 445555544322 11333 236776654432 3455555433 33322221
Q ss_pred ECCCCCc--ccceEEeeCCeEEEEE------------------eCCEEEEEeCCCCcEEEeE
Q 039590 296 VGPFVGV--QRPLGFWKKGAFFVVS------------------TSGHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 296 i~~~~~~--~~~~~~~~~~~il~~~------------------~~~~l~~yd~~t~~~~~v~ 337 (379)
....... ..-+.+..+|.+++.. ....++.||+++++++.+.
T Consensus 124 ~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~ 185 (305)
T 3dr2_A 124 RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA 185 (305)
T ss_dssp EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE
T ss_pred ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe
Confidence 1111011 1235556678888741 1357999999888887664
No 145
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=52.39 E-value=1.1e+02 Score=26.09 Aligned_cols=96 Identities=9% Similarity=-0.041 Sum_probs=50.8
Q ss_pred cEEEEEECCCceE----EEecCCCCCCCCCcEEEEE-CCe-EEEEEEcCCCCEEEEEEEcC-----------------Ce
Q 039590 233 AVILSFHLGNDVF----EEVQEPYIPQSEPTIIGVY-NHS-LCVLLSHNIENYYDIWVMKD-----------------KC 289 (379)
Q Consensus 233 ~~i~~fD~~~e~~----~~i~~P~~~~~~~~~l~~~-~G~-L~l~~~~~~~~~i~iW~l~~-----------------~~ 289 (379)
..|..+|+.+.+- ......... ..-..+... +|. +.+.+.. +..+.||-+.. ..
T Consensus 234 g~i~i~d~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~ 310 (357)
T 3i2n_A 234 GKFHVFDMRTQHPTKGFASVSEKAHK-STVWQVRHLPQNRELFLTAGG--AGGLHLWKYEYPIQRSKKDSEGIEMGVAGS 310 (357)
T ss_dssp TEEEEEEEEEEETTTEEEEEEEECCS-SCEEEEEEETTEEEEEEEEET--TSEEEEEEEECCSCC--CCTTSCCCCCCCE
T ss_pred CeEEEEeCcCCCcccceeeeccCCCc-CCEEEEEECCCCCcEEEEEeC--CCcEEEeecCCCcccccccCCCCccccccc
Confidence 4777888765432 111111111 111134433 455 4554544 67999999875 13
Q ss_pred EEEEEEECCCCCcccceEEeeCCeEEE--EEeCCEEEEEeCCCC
Q 039590 290 WIKQLSVGPFVGVQRPLGFWKKGAFFV--VSTSGHLLLYDPNTQ 331 (379)
Q Consensus 290 W~~~~~i~~~~~~~~~~~~~~~~~il~--~~~~~~l~~yd~~t~ 331 (379)
+..+..+.....-..-+.+..++..++ ...++.+.+||+++.
T Consensus 311 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 311 VSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 445555543332223345556676555 344789999998764
No 146
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=51.90 E-value=1e+02 Score=25.63 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=39.3
Q ss_pred CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECC-CCCcccceEEeeCCeEEEEEeCCEEEEEeCCCCcEE
Q 039590 265 NHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGP-FVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMR 334 (379)
Q Consensus 265 ~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~-~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~ 334 (379)
++.+.+++.. +..+.+|-... ....+.. ......-+.+..++.++....++.+.+||+++++..
T Consensus 154 ~~~~l~~~~~--d~~i~i~d~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~ 218 (313)
T 3odt_A 154 SENKFLTASA--DKTIKLWQNDK----VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVL 218 (313)
T ss_dssp TTTEEEEEET--TSCEEEEETTE----EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEE
T ss_pred CCCEEEEEEC--CCCEEEEecCc----eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhh
Confidence 6776666665 67899997332 2222322 222233455566777655566889999999887644
No 147
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=51.58 E-value=1.2e+02 Score=26.47 Aligned_cols=92 Identities=8% Similarity=-0.061 Sum_probs=49.6
Q ss_pred cEEEEEECCCceEEE-ecCCCCCCCCCcEEEE-ECCeEEEEEEcCCCCEEEEEEEcC-C----e-------------EEE
Q 039590 233 AVILSFHLGNDVFEE-VQEPYIPQSEPTIIGV-YNHSLCVLLSHNIENYYDIWVMKD-K----C-------------WIK 292 (379)
Q Consensus 233 ~~i~~fD~~~e~~~~-i~~P~~~~~~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~-~----~-------------W~~ 292 (379)
..|..+|+.+.+... +...... -..+.. -+|.+.+++.. +..+.||-+.. . . +..
T Consensus 310 ~~i~i~d~~~~~~~~~~~~~~~~---i~~~~~s~~~~~l~~~~~--dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (425)
T 1r5m_A 310 GSVRLWSLKQNTLLALSIVDGVP---IFAGRISQDGQKYAVAFM--DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPL 384 (425)
T ss_dssp SEEEEEETTTTEEEEEEECTTCC---EEEEEECTTSSEEEEEET--TSCEEEEECHHHHC--------------CEECCE
T ss_pred CcEEEEECCCCcEeEecccCCcc---EEEEEEcCCCCEEEEEEC--CCeEEEEECCCCccceeeeecccccccCcccchh
Confidence 489999998765432 2322111 113332 35666666655 67899998875 1 0 113
Q ss_pred EEEECCCCC--cccceEEeeCCeEEEE-EeCCEEEEEeCC
Q 039590 293 QLSVGPFVG--VQRPLGFWKKGAFFVV-STSGHLLLYDPN 329 (379)
Q Consensus 293 ~~~i~~~~~--~~~~~~~~~~~~il~~-~~~~~l~~yd~~ 329 (379)
+..+..... -..-+.+..++..++. ..++.+.+||++
T Consensus 385 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 385 YASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred hhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 333433221 2233445556665544 447789999876
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=51.24 E-value=1e+02 Score=25.28 Aligned_cols=98 Identities=12% Similarity=-0.050 Sum_probs=50.9
Q ss_pred cEEEEEECCCceEEEecCCCCCCCCCcEEE-EECCeEEEEEEcCCCCEEEEEEEcC--CeEEEEEEECCCCCcccceEEe
Q 039590 233 AVILSFHLGNDVFEEVQEPYIPQSEPTIIG-VYNHSLCVLLSHNIENYYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFW 309 (379)
Q Consensus 233 ~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~ 309 (379)
..|..+|..+.....+...... ...+. .-+|+..++... ....+.||.++. .. ...+.........+.+.
T Consensus 153 ~~l~~~~~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~-~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~s 225 (297)
T 2ojh_A 153 FDIYSMDIDSGVETRLTHGEGR---NDGPDYSPDGRWIYFNSS-RTGQMQIWRVRVDGSS---VERITDSAYGDWFPHPS 225 (297)
T ss_dssp EEEEEEETTTCCEEECCCSSSC---EEEEEECTTSSEEEEEEC-TTSSCEEEEEETTSSC---EEECCCCSEEEEEEEEC
T ss_pred eEEEEEECCCCcceEcccCCCc---cccceECCCCCEEEEEec-CCCCccEEEECCCCCC---cEEEecCCcccCCeEEC
Confidence 4677777776665444322111 11333 236664444443 256789998873 22 12222222112223445
Q ss_pred eCCeEE-EEEeC-----------CEEEEEeCCCCcEEEeE
Q 039590 310 KKGAFF-VVSTS-----------GHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 310 ~~~~il-~~~~~-----------~~l~~yd~~t~~~~~v~ 337 (379)
.+|+.+ +...+ ..++.||+++++.+.+.
T Consensus 226 ~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 226 PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF 265 (297)
T ss_dssp TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred CCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence 566644 44332 46999999998877655
No 149
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=51.05 E-value=1.2e+02 Score=26.15 Aligned_cols=105 Identities=9% Similarity=0.162 Sum_probs=58.8
Q ss_pred CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEE-EECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEE
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIG-VYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSV 296 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i 296 (379)
+|.+||..... ..|..+|..+.+...+..|... ..++ .-+|++.+.. . ..+.+|-.+..........
T Consensus 60 ~~~l~~~d~~~----~~i~~~d~~~~~~~~~~~~~~v----~~i~~~~dg~l~v~~-~---~gl~~~d~~~g~~~~~~~~ 127 (326)
T 2ghs_A 60 SGTAWWFNILE----RELHELHLASGRKTVHALPFMG----SALAKISDSKQLIAS-D---DGLFLRDTATGVLTLHAEL 127 (326)
T ss_dssp TTEEEEEEGGG----TEEEEEETTTTEEEEEECSSCE----EEEEEEETTEEEEEE-T---TEEEEEETTTCCEEEEECS
T ss_pred CCEEEEEECCC----CEEEEEECCCCcEEEEECCCcc----eEEEEeCCCeEEEEE-C---CCEEEEECCCCcEEEEeeC
Confidence 37899987654 5899999998887777665321 2344 4578877654 2 2344443333444333222
Q ss_pred CCCCCc--ccceEEeeCCeEEEEEe-------CCEEEEEeCCCCcEEEe
Q 039590 297 GPFVGV--QRPLGFWKKGAFFVVST-------SGHLLLYDPNTQEMRDL 336 (379)
Q Consensus 297 ~~~~~~--~~~~~~~~~~~il~~~~-------~~~l~~yd~~t~~~~~v 336 (379)
...... ..-+.+..+|.+++... ...++.|| +++++.+
T Consensus 128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~ 174 (326)
T 2ghs_A 128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL 174 (326)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE
T ss_pred CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe
Confidence 111111 12234455677776543 25788888 5666654
No 150
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=50.40 E-value=1.3e+02 Score=26.43 Aligned_cols=203 Identities=13% Similarity=0.086 Sum_probs=0.0
Q ss_pred eecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEE
Q 039590 106 PFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHV 185 (379)
Q Consensus 106 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~ 185 (379)
+-+|-.++.+.....+.|||..|++....-....... ....+.+.....-.... ...+
T Consensus 75 sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v---------~~~~~s~~g~~las~~~-------------d~~v 132 (380)
T 3iz6_a 75 TPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWV---------MECAFAPNGQSVACGGL-------------DSAC 132 (380)
T ss_dssp CTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTC---------CCCEECTTSSEEEECCS-------------SSCC
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCE---------EEEEECCCCCEEEEeeC-------------CCcE
Q ss_pred EEEEcCCCcccccccccCCcceeee---ccccEEECceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEE
Q 039590 186 AMYNLRTNSWRDLKSFKSDHYVMSF---WSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIG 262 (379)
Q Consensus 186 ~vyss~~~~W~~~~~~~~~~~~~~~---~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~ 262 (379)
.+|+..+..-+.-..-........- ......-++.-+.++... ...|..+|+.+.+-...-.......+...+.
T Consensus 133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~---D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 209 (380)
T 3iz6_a 133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG---DQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209 (380)
T ss_dssp EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECT---TSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred EEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECC---CCcEEEEEcCCCcEEEEeecccCCCCccCeE
Q ss_pred EE-----CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEEEEe-CCEEEEEeCCCCcEEEe
Q 039590 263 VY-----NHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST-SGHLLLYDPNTQEMRDL 336 (379)
Q Consensus 263 ~~-----~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~-~~~l~~yd~~t~~~~~v 336 (379)
.. ++.+.+.+.. +..+.||-+. ..-..+..+.....-..-+.+..++..++... ++.+.+||+++++....
T Consensus 210 ~~~~~~~~~~~l~sgs~--D~~v~~wd~~-~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~ 286 (380)
T 3iz6_a 210 SLSINSLNANMFISGSC--DTTVRLWDLR-ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV 286 (380)
T ss_dssp EEEECSSSCCEEEEEET--TSCEEEEETT-TTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEE
T ss_pred EEEeecCCCCEEEEEEC--CCeEEEEECC-CCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEE
No 151
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=50.20 E-value=1.3e+02 Score=26.23 Aligned_cols=98 Identities=8% Similarity=-0.060 Sum_probs=48.8
Q ss_pred cEEEEEECCCceEEEecCCCCC----CCCCcEEEEECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEE
Q 039590 233 AVILSFHLGNDVFEEVQEPYIP----QSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGF 308 (379)
Q Consensus 233 ~~i~~fD~~~e~~~~i~~P~~~----~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~ 308 (379)
..|..+|+.+.+-......... ....+......+...++... +..+.+|-+... ..+..+........-+.+
T Consensus 267 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~--~~~~~~~~~~~~v~~~~~ 342 (408)
T 4a11_B 267 NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY--GSTIAVYTVYSG--EQITMLKGHYKTVDCCVF 342 (408)
T ss_dssp SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE--TTEEEEEETTTC--CEEEEECCCSSCEEEEEE
T ss_pred CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec--CCEEEEEECcCC--cceeeeccCCCeEEEEEE
Confidence 4688999887654322111110 11111222222333333333 568888887752 223444433222233555
Q ss_pred eeCCeEEEEE-eCCEEEEEeCCCCcEE
Q 039590 309 WKKGAFFVVS-TSGHLLLYDPNTQEMR 334 (379)
Q Consensus 309 ~~~~~il~~~-~~~~l~~yd~~t~~~~ 334 (379)
..++.+++.. .++.+.+||+++.+..
T Consensus 343 s~~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 343 QSNFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp ETTTTEEEEEETTSCEEEEEECC----
T ss_pred cCCCCEEEEECCCCeEEEEeCCCCCcc
Confidence 6677766654 4788999999887643
No 152
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=49.19 E-value=1.4e+02 Score=26.40 Aligned_cols=196 Identities=10% Similarity=0.107 Sum_probs=89.8
Q ss_pred eecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEE
Q 039590 106 PFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHV 185 (379)
Q Consensus 106 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~ 185 (379)
+.+|-.++.+.....+.|||..+++....-.. +. .....+.+.+..+ + ++.. ..+ ..+
T Consensus 132 s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~----h~-----~~v~~~~~~p~~~-~-l~s~---s~d--------~~v 189 (393)
T 1erj_A 132 SPDGKFLATGAEDRLIRIWDIENRKIVMILQG----HE-----QDIYSLDYFPSGD-K-LVSG---SGD--------RTV 189 (393)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECC----CS-----SCEEEEEECTTSS-E-EEEE---ETT--------SEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc----CC-----CCEEEEEEcCCCC-E-EEEe---cCC--------CcE
Confidence 44565555544444699999998875432111 11 1235566655432 2 2221 111 234
Q ss_pred EEEEcCCCcccccccccCCcceeeeccccEEE-CceEeeEeecCCCCccEEEEEECCCceEE-EecCCCCC-CCC--Cc-
Q 039590 186 AMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYV-DGVCYWLSRFRNNDHAVILSFHLGNDVFE-EVQEPYIP-QSE--PT- 259 (379)
Q Consensus 186 ~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~-~G~lywl~~~~~~~~~~i~~fD~~~e~~~-~i~~P~~~-~~~--~~- 259 (379)
.+++.+++.-...-......... .+.- +|.+...+... ..|..+|+.+.... .+..+... ..+ ..
T Consensus 190 ~iwd~~~~~~~~~~~~~~~v~~~-----~~~~~~~~~l~~~s~d----~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~ 260 (393)
T 1erj_A 190 RIWDLRTGQCSLTLSIEDGVTTV-----AVSPGDGKYIAAGSLD----RAVRVWDSETGFLVERLDSENESGTGHKDSVY 260 (393)
T ss_dssp EEEETTTTEEEEEEECSSCEEEE-----EECSTTCCEEEEEETT----SCEEEEETTTCCEEEEEC------CCCSSCEE
T ss_pred EEEECCCCeeEEEEEcCCCcEEE-----EEECCCCCEEEEEcCC----CcEEEEECCCCcEEEeecccccCCCCCCCCEE
Confidence 48888776432221000000000 0111 44443333332 46888888776542 23222111 111 12
Q ss_pred EEEE-ECCeEEEEEEcCCCCEEEEEEEcCCe----------EEEEEEECCCCCcccceEEeeCCeEEEEE-eCCEEEEEe
Q 039590 260 IIGV-YNHSLCVLLSHNIENYYDIWVMKDKC----------WIKQLSVGPFVGVQRPLGFWKKGAFFVVS-TSGHLLLYD 327 (379)
Q Consensus 260 ~l~~-~~G~L~l~~~~~~~~~i~iW~l~~~~----------W~~~~~i~~~~~~~~~~~~~~~~~il~~~-~~~~l~~yd 327 (379)
.+.. -+|.+.+.+.. +..+.||-+.... ......+........-+.+..++..++.. .++.+.+||
T Consensus 261 ~v~~~~~g~~l~s~s~--d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd 338 (393)
T 1erj_A 261 SVVFTRDGQSVVSGSL--DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338 (393)
T ss_dssp EEEECTTSSEEEEEET--TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred EEEECCCCCEEEEEeC--CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 3333 35666666655 7889999887510 01111111111112223444556655544 478899999
Q ss_pred CCCCcEE
Q 039590 328 PNTQEMR 334 (379)
Q Consensus 328 ~~t~~~~ 334 (379)
.++++..
T Consensus 339 ~~~~~~~ 345 (393)
T 1erj_A 339 KKSGNPL 345 (393)
T ss_dssp TTTCCEE
T ss_pred CCCCeEE
Confidence 9988743
No 153
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=48.88 E-value=1.2e+02 Score=25.60 Aligned_cols=92 Identities=8% Similarity=0.048 Sum_probs=45.8
Q ss_pred cEEEEEECCCceEE-EecCCCCCCCCCcEEEEECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECC---------CCCc
Q 039590 233 AVILSFHLGNDVFE-EVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGP---------FVGV 302 (379)
Q Consensus 233 ~~i~~fD~~~e~~~-~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~---------~~~~ 302 (379)
..|..+|+.+.+-. .+...... ..+....+...++... +..+.||-++...- ...+.. ...-
T Consensus 237 g~i~iwd~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~~~~--d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~h~~~ 308 (340)
T 4aow_A 237 GQAMLWDLNEGKHLYTLDGGDII----NALCFSPNRYWLCAAT--GPSIKIWDLEGKII--VDELKQEVISTSSKAEPPQ 308 (340)
T ss_dssp CEEEEEETTTTEEEEEEECSSCE----EEEEECSSSSEEEEEE--TTEEEEEETTTTEE--EEEECCC-------CCCCC
T ss_pred CeEEEEEeccCceeeeecCCceE----EeeecCCCCceeeccC--CCEEEEEECCCCeE--EEeccccceeeeccCCCCC
Confidence 47888888765432 22222111 1233333333334444 57888898775211 111110 0111
Q ss_pred ccceEEeeCCeEEEEEe-CCEEEEEeCCCCc
Q 039590 303 QRPLGFWKKGAFFVVST-SGHLLLYDPNTQE 332 (379)
Q Consensus 303 ~~~~~~~~~~~il~~~~-~~~l~~yd~~t~~ 332 (379)
..-+.+..+|..++... ++.+.+||++|++
T Consensus 309 v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 309 CTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 12244556777666644 7789999998874
No 154
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=48.46 E-value=2.1e+02 Score=28.25 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=61.4
Q ss_pred CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEEEE-CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEE
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGVY-NHSLCVLLSHNIENYYDIWVMKDKCWIKQLSV 296 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~~-~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i 296 (379)
+|.| |++... ..|..||..+.+++.+..+......-..+.+. +|.|.+... ..+..+-.+...|......
T Consensus 417 ~g~l-Wigt~~----~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~----~Gl~~~~~~~~~~~~~~~~ 487 (781)
T 3v9f_A 417 EGNL-WFGTYL----GNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH----AGVFVIDLASKKVIHHYDT 487 (781)
T ss_dssp TSCE-EEEETT----EEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET----TEEEEEESSSSSCCEEECT
T ss_pred CCCE-EEEecc----CCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC----CceEEEeCCCCeEEecccC
Confidence 3544 555442 48999999999998876541111111245443 577766542 3344443333455544322
Q ss_pred CCC---CCcccceEEeeCCeEEEEEeCCEEEEEeCCCCcEEEeE
Q 039590 297 GPF---VGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 297 ~~~---~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~~v~ 337 (379)
... .....-+....+|.+.+....+.++.||+++++++.+.
T Consensus 488 ~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~ 531 (781)
T 3v9f_A 488 SNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFN 531 (781)
T ss_dssp TTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEEC
T ss_pred cccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEcc
Confidence 211 11112233344567777665578999999998887754
No 155
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=47.76 E-value=2e+02 Score=27.76 Aligned_cols=185 Identities=11% Similarity=0.037 Sum_probs=88.9
Q ss_pred CeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCC-cccc
Q 039590 119 DRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTN-SWRD 197 (379)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~-~W~~ 197 (379)
..++++|..|++...+....... .....+.+.|..+ +-++.... . ......+.+++..++ ..+.
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~~-------~~~~~~~~spdg~-~l~~~~~~--~-----~~~~~~v~~~d~~~g~~~~~ 299 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPKE-------KFLTNLSWSPDEN-ILYVAEVN--R-----AQNECKVNAYDAETGRFVRT 299 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCTT-------CEEEEEEECTTSS-EEEEEEEC--T-----TSCEEEEEEEETTTCCEEEE
T ss_pred eEEEEEECCCCceEeeccCCCCc-------eeEeeEEEECCCC-EEEEEEeC--C-----CCCeeEEEEEECCCCceeeE
Confidence 36999999999876654321110 1123455555432 22222111 0 111344558888777 5655
Q ss_pred cccccCCcceeee--ccccEEE----CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCc-E-EEE-ECCe-
Q 039590 198 LKSFKSDHYVMSF--WSGSLYV----DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPT-I-IGV-YNHS- 267 (379)
Q Consensus 198 ~~~~~~~~~~~~~--~~~~v~~----~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~-~-l~~-~~G~- 267 (379)
+.. .. ...+ ...++.+ +|.+.+.+... ....|..+|........+.... ... . +.. -+|+
T Consensus 300 ~~~---~~-~~~~~~~~~~~~~sp~~dg~~l~~~~~~--g~~~l~~~~~~~~~~~~l~~~~----~~v~~~~~~spdg~~ 369 (706)
T 2z3z_A 300 LFV---ET-DKHYVEPLHPLTFLPGSNNQFIWQSRRD--GWNHLYLYDTTGRLIRQVTKGE----WEVTNFAGFDPKGTR 369 (706)
T ss_dssp EEE---EE-CSSCCCCCSCCEECTTCSSEEEEEECTT--SSCEEEEEETTSCEEEECCCSS----SCEEEEEEECTTSSE
T ss_pred EEE---cc-CCCeECccCCceeecCCCCEEEEEEccC--CccEEEEEECCCCEEEecCCCC----eEEEeeeEEcCCCCE
Confidence 431 00 0001 0112222 78766655432 3457888887766665553221 111 2 232 3554
Q ss_pred EEEEEEcCCCCEEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEEE-eC----CEEEEEeCCCCc
Q 039590 268 LCVLLSHNIENYYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVS-TS----GHLLLYDPNTQE 332 (379)
Q Consensus 268 L~l~~~~~~~~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~-~~----~~l~~yd~~t~~ 332 (379)
|++...........||..+- .. ...+.....+ ..+.+..+|+.++.. .+ ..++.||+++++
T Consensus 370 l~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~-~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 370 LYFESTEASPLERHFYCIDIKGGK---TKDLTPESGM-HRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEEESSSCTTCBEEEEEETTCCC---CEESCCSSSE-EEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEecCCCCceEEEEEEEcCCCC---ceeccCCCce-EEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 44444332223567777764 22 1223222221 234455566644433 32 469999998887
No 156
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=47.07 E-value=1.6e+02 Score=26.32 Aligned_cols=88 Identities=14% Similarity=0.148 Sum_probs=49.9
Q ss_pred EEEecCCCCCCCCCcEEEE-ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEEEE-eCCE
Q 039590 245 FEEVQEPYIPQSEPTIIGV-YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVS-TSGH 322 (379)
Q Consensus 245 ~~~i~~P~~~~~~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~-~~~~ 322 (379)
++.+..|....++-..++. ..+.+..++. +..+.||-.+...-.+............-+.+..+|..+... .++.
T Consensus 94 ~~~l~ap~~~~d~y~~~l~wS~~n~lAvgl---d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~ 170 (420)
T 4gga_A 94 DRILDAPEIRNDYYLNLVDWSSGNVLAVAL---DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE 170 (420)
T ss_dssp SEEEECTTCCCCTTCBCEEECTTSEEEEEE---TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred ceEEECCCCcccccceeEEECCCCEEEEEe---CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCe
Confidence 3455666655333234443 2333333333 468999988765444455444222222345556677766654 4788
Q ss_pred EEEEeCCCCcEEE
Q 039590 323 LLLYDPNTQEMRD 335 (379)
Q Consensus 323 l~~yd~~t~~~~~ 335 (379)
+.+||+++++...
T Consensus 171 v~iWd~~~~~~~~ 183 (420)
T 4gga_A 171 VQLWDVQQQKRLR 183 (420)
T ss_dssp EEEEETTTTEEEE
T ss_pred EEEEEcCCCcEEE
Confidence 9999999887543
No 157
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=46.55 E-value=1.5e+02 Score=26.03 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=42.1
Q ss_pred CeEEEEEEcC------CCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEEEEeCCEEEEEeCCCCcEEEeE
Q 039590 266 HSLCVLLSHN------IENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 266 G~L~l~~~~~------~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~~v~ 337 (379)
++|++..... ....-.||+.+-.....+.+++... ..-+.+..+|+.++....+.+.+||.++++++.+.
T Consensus 266 ~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~ 341 (361)
T 2oiz_A 266 GRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLR 341 (361)
T ss_dssp TEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEE
T ss_pred CeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeE
Confidence 5677665411 1123345555543344566665333 45566677887666655588999999999556555
No 158
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=45.73 E-value=2e+02 Score=27.08 Aligned_cols=190 Identities=15% Similarity=0.127 Sum_probs=0.0
Q ss_pred cceecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeee
Q 039590 104 GGPFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFA 183 (379)
Q Consensus 104 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~ 183 (379)
.+..+.-+.+.....+...+||..|++.+.+...+. ..+.++|+... +........+ ..
T Consensus 117 ~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~------------~~~~~spDG~~---la~~~~~~~~------~~ 175 (582)
T 3o4h_A 117 GVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG------------FGFVSDIRGDL---IAGLGFFGGG------RV 175 (582)
T ss_dssp EEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS------------CEEEEEEETTE---EEEEEEEETT------EE
T ss_pred eCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC------------ceEEECCCCCE---EEEEEEcCCC------Ce
Q ss_pred EEEEEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecCCCCcc--EEEEEECCCceEEEecCCCCCCCCCcEE
Q 039590 184 HVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHA--VILSFHLGNDVFEEVQEPYIPQSEPTII 261 (379)
Q Consensus 184 ~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~--~i~~fD~~~e~~~~i~~P~~~~~~~~~l 261 (379)
.+++++..++.++.+. .. ..........-||...+..... . .|..+|+.+.+.. .+.........-.
T Consensus 176 ~i~~~d~~~g~~~~l~----~~-~~~~~~~~~SpDG~~l~~~~~~----~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~ 244 (582)
T 3o4h_A 176 SLFTSNLSSGGLRVFD----SG-EGSFSSASISPGMKVTAGLETA----REARLVTVDPRDGSVE--DLELPSKDFSSYR 244 (582)
T ss_dssp EEEEEETTTCCCEEEC----CS-SCEEEEEEECTTSCEEEEEECS----SCEEEEEECTTTCCEE--ECCCSCSHHHHHC
T ss_pred EEEEEcCCCCCceEee----cC-CCccccceECCCCCEEEEccCC----CeeEEEEEcCCCCcEE--EccCCCcChhhhh
Q ss_pred --------EEECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEEEEe----CCEEEEEeCC
Q 039590 262 --------GVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST----SGHLLLYDPN 329 (379)
Q Consensus 262 --------~~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~----~~~l~~yd~~ 329 (379)
..-+|.+.+.... ...+.||.+ ....+ .......-+.+. ++.+++... ...++.+|.+
T Consensus 245 ~~~~~~~~~spdg~~~~~~~~--~g~~~l~~~--g~~~~-----~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 245 PTAITWLGYLPDGRLAVVARR--EGRSAVFID--GERVE-----APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp CSEEEEEEECTTSCEEEEEEE--TTEEEEEET--TEEEC-----CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred hccccceeEcCCCcEEEEEEc--CCcEEEEEE--CCeec-----cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Q ss_pred CCcEEEe
Q 039590 330 TQEMRDL 336 (379)
Q Consensus 330 t~~~~~v 336 (379)
+ +.+.+
T Consensus 315 ~-~~~~l 320 (582)
T 3o4h_A 315 E-PLLEG 320 (582)
T ss_dssp C-EEECC
T ss_pred C-ceEEE
No 159
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=45.36 E-value=49 Score=24.48 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=28.7
Q ss_pred eEEEEecCCC-ceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEE
Q 039590 120 RLILCNLETK-ESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIH 169 (379)
Q Consensus 120 ~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 169 (379)
.++..||.|+ +|...-... ..+.+.+|+..+.|+|+.+.
T Consensus 12 ~V~~~D~~tk~~W~p~g~~~-----------~~V~~~~d~~~~~yRIv~~~ 51 (120)
T 1ddw_A 12 HVFQIDPNTKKNWVPTSKHA-----------VTVSYFYDSTRNVYRIISLD 51 (120)
T ss_dssp EEEEECTTTSCSEEESCSSC-----------EEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEcCCCCCceEeCCCCc-----------eEEEEEEcCCCCEEEEEEcc
Confidence 4788999996 897543322 24678889888899999863
No 160
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=45.35 E-value=43 Score=24.43 Aligned_cols=41 Identities=7% Similarity=-0.061 Sum_probs=29.1
Q ss_pred eEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEE
Q 039590 120 RLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIH 169 (379)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 169 (379)
.+++.+|.|++|...-... + .+.+.+..|...+.|+|+...
T Consensus 12 ~V~~~d~~~~~W~p~~~~~-----g----~s~V~~~~d~~~~~yrIv~~~ 52 (112)
T 1evh_A 12 AVMVYDDANKKWVPAGGST-----G----FSRVHIYHHTGNNTFRVVGRK 52 (112)
T ss_dssp EEEEEETTTTEEEEGGGCC-----S----CEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEcCCCCceEECCCCC-----C----ceEEEEEEECCCCEEEEEEEE
Confidence 4788999999876433211 1 134788899888899998873
No 161
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=44.87 E-value=1.4e+02 Score=25.20 Aligned_cols=111 Identities=14% Similarity=0.023 Sum_probs=60.1
Q ss_pred Cce-EeeEeecCCCCccEEEEEECCCceE----EEecCCCCCCCCCcEEE-EECCeEEEEEEcCCCCEEEEEEEcCCeEE
Q 039590 218 DGV-CYWLSRFRNNDHAVILSFHLGNDVF----EEVQEPYIPQSEPTIIG-VYNHSLCVLLSHNIENYYDIWVMKDKCWI 291 (379)
Q Consensus 218 ~G~-lywl~~~~~~~~~~i~~fD~~~e~~----~~i~~P~~~~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~~~W~ 291 (379)
+|. +|..... ...|..+|+.+.+. ..++..... ..+. .-+|+..++... ....+.+|-++.....
T Consensus 186 dg~~l~v~~~~----~~~v~v~d~~~~~~~~~~~~~~~~~~~----~~~~~spdg~~l~v~~~-~~~~i~~~d~~~~~~~ 256 (331)
T 3u4y_A 186 DGNFAFVANLI----GNSIGILETQNPENITLLNAVGTNNLP----GTIVVSRDGSTVYVLTE-STVDVFNFNQLSGTLS 256 (331)
T ss_dssp TSSEEEEEETT----TTEEEEEECSSTTSCEEEEEEECSSCC----CCEEECTTSSEEEEECS-SEEEEEEEETTTTEEE
T ss_pred CCCEEEEEeCC----CCeEEEEECCCCcccceeeeccCCCCC----ceEEECCCCCEEEEEEc-CCCEEEEEECCCCcee
Confidence 565 4444322 35799999987664 333332111 1233 346763333322 2456777776654443
Q ss_pred EEEEECCC----CCc---ccceEEeeCCeEEEEEe--CCEEEEEeCCCCcEEEeE
Q 039590 292 KQLSVGPF----VGV---QRPLGFWKKGAFFVVST--SGHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 292 ~~~~i~~~----~~~---~~~~~~~~~~~il~~~~--~~~l~~yd~~t~~~~~v~ 337 (379)
.+..+... +.. ...+.+..+|+.+++.. ++.+.+||++++....+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~ 311 (331)
T 3u4y_A 257 FVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYVA 311 (331)
T ss_dssp EEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECT
T ss_pred eecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCccccee
Confidence 33333311 111 12356777777655443 568999999988776654
No 162
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=44.63 E-value=1.8e+02 Score=26.43 Aligned_cols=109 Identities=12% Similarity=0.075 Sum_probs=61.5
Q ss_pred CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEEE-ECCe-EEEEEEcCC-CCEEEEEEEcCCeEEEEE
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGV-YNHS-LCVLLSHNI-ENYYDIWVMKDKCWIKQL 294 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~-~~G~-L~l~~~~~~-~~~i~iW~l~~~~W~~~~ 294 (379)
+|.||+.... ..|..||+.+.....+..+. .....|+. .+|. |++...... .....+|...+..|....
T Consensus 149 ~g~Lyv~d~~-----~~I~~id~~~~~v~~~~~~~---~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~ 220 (430)
T 3tc9_A 149 HNHLYLVGEQ-----HPTRLIDFEKEYVSTVYSGL---SKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVIT 220 (430)
T ss_dssp EEEEEEEEBT-----EEEEEEETTTTEEEEEECCC---SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEE
T ss_pred CCeEEEEeCC-----CcEEEEECCCCEEEEEecCC---CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeee
Confidence 4899998753 48999999988776653211 12224553 3566 777765422 233445555554443222
Q ss_pred EECCCCCcccceEEee-CCeEEEEEe-CCEEEEEeCCCCcEEE
Q 039590 295 SVGPFVGVQRPLGFWK-KGAFFVVST-SGHLLLYDPNTQEMRD 335 (379)
Q Consensus 295 ~i~~~~~~~~~~~~~~-~~~il~~~~-~~~l~~yd~~t~~~~~ 335 (379)
.+.... -..-+.+.. +|.+++... .++++.||++++....
T Consensus 221 ~l~~~~-~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~ 262 (430)
T 3tc9_A 221 ELTKGQ-NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP 262 (430)
T ss_dssp EEEECS-SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred eeccCC-CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE
Confidence 222111 122244554 567777654 6789999998877643
No 163
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=43.22 E-value=1.2e+02 Score=25.74 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=41.8
Q ss_pred CCeEEEEEEcCCCCEEEEEEEcC-CeEEEEEEECCCCCcccceEEeeCCe-EEEEE-eCCEEEEEeC-CCCcEEEeE
Q 039590 265 NHSLCVLLSHNIENYYDIWVMKD-KCWIKQLSVGPFVGVQRPLGFWKKGA-FFVVS-TSGHLLLYDP-NTQEMRDLG 337 (379)
Q Consensus 265 ~G~L~l~~~~~~~~~i~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~-~~~~l~~yd~-~t~~~~~v~ 337 (379)
+|.+.+++.. +..+.||-++. ........+.....-..-+.+..++. .++.. .++.+.+||+ ++++...+.
T Consensus 22 ~~~~l~~~~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 96 (342)
T 1yfq_A 22 SKSLLLITSW--DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALT 96 (342)
T ss_dssp GGTEEEEEET--TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECB
T ss_pred CCCEEEEEcC--CCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEecc
Confidence 5666666655 68899999987 31111111111122123344555677 55544 4789999999 888775554
No 164
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=43.13 E-value=1.5e+02 Score=25.31 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=0.0
Q ss_pred CCeEEEEEEcCCCCEEEEEEEcC---CeEEEEEEECCCCCcccceEEeeCCeEEEEEe-CCEEEEEeCCCCcEEE
Q 039590 265 NHSLCVLLSHNIENYYDIWVMKD---KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST-SGHLLLYDPNTQEMRD 335 (379)
Q Consensus 265 ~G~L~l~~~~~~~~~i~iW~l~~---~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~-~~~l~~yd~~t~~~~~ 335 (379)
++.+.+.+.. +..+.+|-+.. ..-..+..+........-+.+..++..++... ++.+.+||+++++...
T Consensus 29 ~~~~l~s~s~--D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~ 101 (319)
T 3frx_A 29 QPNLLLSASR--DKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ 101 (319)
T ss_dssp CTTEEEEEET--TSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred CccEEEEecC--CccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeE
No 165
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=42.07 E-value=1.7e+02 Score=25.21 Aligned_cols=137 Identities=11% Similarity=0.145 Sum_probs=68.6
Q ss_pred ecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEE
Q 039590 107 FDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVA 186 (379)
Q Consensus 107 ~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~ 186 (379)
.+|-|.+.+.....+.++++..+....+-.... ....++..|+..+.-.+.- ... ...++
T Consensus 87 ~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~---------~~P~~iavdp~~g~ly~~d----~~~-------~~~I~ 146 (316)
T 1ijq_A 87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG---------SKPRAIVVDPVHGFMYWTD----WGT-------PAKIK 146 (316)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEEECTT---------CCEEEEEEETTTTEEEEEE----CSS-------SCEEE
T ss_pred cCCeEEEEECCCCEEEEEeCCCCceEEEEECCC---------CCcceEEeCCCCCEEEEEc----cCC-------CCeEE
Confidence 456666655445568888887654433321111 1135677787655222111 110 11223
Q ss_pred EEEcCCCcccccccccCCcceeeeccccEEE---CceEeeEeecCCCCccEEEEEECCCceEEEe-cCCCCCCCCCcEEE
Q 039590 187 MYNLRTNSWRDLKSFKSDHYVMSFWSGSLYV---DGVCYWLSRFRNNDHAVILSFHLGNDVFEEV-QEPYIPQSEPTIIG 262 (379)
Q Consensus 187 vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~l~ 262 (379)
+++.....-+.+.. . ... ...++.+ +|.|||..... ..|.++|+....-+.+ ..+... .....|+
T Consensus 147 ~~~~dG~~~~~~~~---~--~~~-~P~gla~d~~~~~lY~~D~~~----~~I~~~d~dg~~~~~~~~~~~~~-~~P~gia 215 (316)
T 1ijq_A 147 KGGLNGVDIYSLVT---E--NIQ-WPNGITLDLLSGRLYWVDSKL----HSISSIDVNGGNRKTILEDEKRL-AHPFSLA 215 (316)
T ss_dssp EEETTSCCEEEEEC---S--SCS-CEEEEEEETTTTEEEEEETTT----TEEEEEETTSCSCEEEEECTTTT-SSEEEEE
T ss_pred EEcCCCCCeEEEEE---C--CCC-CceEEEEeccCCEEEEEECCC----CeEEEEecCCCceEEEeecCCcc-CCcEEEE
Confidence 66654332222210 0 011 2234444 58999987654 6899999975443333 222111 2234666
Q ss_pred EECCeEEEEEEc
Q 039590 263 VYNHSLCVLLSH 274 (379)
Q Consensus 263 ~~~G~L~l~~~~ 274 (379)
..+|.|++....
T Consensus 216 v~~~~ly~~d~~ 227 (316)
T 1ijq_A 216 VFEDKVFWTDII 227 (316)
T ss_dssp EETTEEEEEETT
T ss_pred EECCEEEEEECC
Confidence 678888887643
No 166
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=41.75 E-value=1.6e+02 Score=24.98 Aligned_cols=96 Identities=10% Similarity=0.059 Sum_probs=52.5
Q ss_pred cEEEEEECCCceEEEe-cCCCCCCCCCcEEEEE---CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEE
Q 039590 233 AVILSFHLGNDVFEEV-QEPYIPQSEPTIIGVY---NHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGF 308 (379)
Q Consensus 233 ~~i~~fD~~~e~~~~i-~~P~~~~~~~~~l~~~---~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~ 308 (379)
..|..+|+.+.....+ .+.... ..-..+... +|.+.+.+.. +..+.||-+....|.....+.....-..-+.+
T Consensus 35 ~~v~lwd~~~~~~~~~~~l~gH~-~~V~~v~~~~~~~~~~l~s~s~--D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~ 111 (316)
T 3bg1_A 35 RSVKIFDVRNGGQILIADLRGHE-GPVWQVAWAHPMYGNILASCSY--DRKVIIWREENGTWEKSHEHAGHDSSVNSVCW 111 (316)
T ss_dssp TEEEEEEEETTEEEEEEEEECCS-SCEEEEEECCGGGSSCEEEEET--TSCEEEECCSSSCCCEEEEECCCSSCCCEEEE
T ss_pred CeEEEEEecCCCcEEEEEEcCCC-ccEEEEEeCCCCCCCEEEEEEC--CCEEEEEECCCCcceEEEEccCCCCceEEEEE
Confidence 4677777766543222 122111 111133332 3666666665 67899998876667666666533222233444
Q ss_pred eeC--CeEEEEE-eCCEEEEEeCCCC
Q 039590 309 WKK--GAFFVVS-TSGHLLLYDPNTQ 331 (379)
Q Consensus 309 ~~~--~~il~~~-~~~~l~~yd~~t~ 331 (379)
..+ +.++... .++.+.+||++++
T Consensus 112 ~p~~~g~~lasgs~D~~i~lwd~~~~ 137 (316)
T 3bg1_A 112 APHDYGLILACGSSDGAISLLTYTGE 137 (316)
T ss_dssp CCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred CCCCCCcEEEEEcCCCCEEEEecCCC
Confidence 443 4444443 4678889998775
No 167
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=41.25 E-value=2e+02 Score=25.84 Aligned_cols=95 Identities=12% Similarity=0.158 Sum_probs=59.1
Q ss_pred cEEEEEECCCceEE-EecCCCCCCCCCcEEEEECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeC
Q 039590 233 AVILSFHLGNDVFE-EVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKK 311 (379)
Q Consensus 233 ~~i~~fD~~~e~~~-~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~ 311 (379)
..|..+|+.+.+-. .+.... .....+..+|...+.+.. +..+.+|-+.... +..... .......+.+..+
T Consensus 332 g~i~vwd~~~~~~~~~~~~h~----~~v~~~~~~~~~l~s~s~--dg~v~vwd~~~~~--~~~~~~-~~~~~~~~~~~~~ 402 (464)
T 3v7d_B 332 TTIRIWDLENGELMYTLQGHT----ALVGLLRLSDKFLVSAAA--DGSIRGWDANDYS--RKFSYH-HTNLSAITTFYVS 402 (464)
T ss_dssp SCEEEEETTTTEEEEEECCCS----SCEEEEEECSSEEEEEET--TSEEEEEETTTCC--EEEEEE-CTTCCCEEEEEEC
T ss_pred CcEEEEECCCCcEEEEEeCCC----CcEEEEEEcCCEEEEEeC--CCcEEEEECCCCc--eeeeec-CCCCccEEEEEeC
Confidence 46888998776532 232221 122334456766666655 6789999988722 122222 1122344566677
Q ss_pred CeEEEEEeCCEEEEEeCCCCcEEEe
Q 039590 312 GAFFVVSTSGHLLLYDPNTQEMRDL 336 (379)
Q Consensus 312 ~~il~~~~~~~l~~yd~~t~~~~~v 336 (379)
+.+++...++.+.+||+++++...-
T Consensus 403 ~~~l~~~~dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 403 DNILVSGSENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp SSEEEEEETTEEEEEETTTCCEEES
T ss_pred CCEEEEecCCeEEEEECCCCcEEeh
Confidence 8888887789999999999887653
No 168
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=41.00 E-value=2.6e+02 Score=27.17 Aligned_cols=114 Identities=9% Similarity=0.073 Sum_probs=59.3
Q ss_pred ECceEeeEeecCCCCccEEEEEECCCc---eEEEecCCCCCCCCCcEEEEECCeEEEEEEcCCCCEEEEEEEcC-CeEEE
Q 039590 217 VDGVCYWLSRFRNNDHAVILSFHLGND---VFEEVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKD-KCWIK 292 (379)
Q Consensus 217 ~~G~lywl~~~~~~~~~~i~~fD~~~e---~~~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~-~~W~~ 292 (379)
-++.+|.++... .....|+..|+.+. .|+.+- |.... . ..+...++.|.+.... ...-.|++++- ..+.+
T Consensus 290 ~g~~l~~~t~~~-~~~~~l~~~d~~~~~~~~~~~l~-~~~~~-~-~~~s~~g~~lv~~~~~--~g~~~l~~~d~~g~~~~ 363 (693)
T 3iuj_A 290 KGSTLYLLTNRD-APNRRLVTVDAANPGPAHWRDLI-PERQQ-V-LTVHSGSGYLFAEYMV--DATARVEQFDYEGKRVR 363 (693)
T ss_dssp ETTEEEEEECTT-CTTCEEEEEETTSCCGGGCEEEE-CCCSS-C-EEEEEETTEEEEEEEE--TTEEEEEEECTTSCEEE
T ss_pred cCCEEEEEECCC-CCCCEEEEEeCCCCCccccEEEe-cCCCC-E-EEEEEECCEEEEEEEE--CCeeEEEEEECCCCeeE
Confidence 357788877543 22468999999763 466542 22211 1 2333455667666655 33334444443 33333
Q ss_pred EEEECCCCCcccceEEeeC-CeEEEEEeC----CEEEEEeCCCCcEEEeE
Q 039590 293 QLSVGPFVGVQRPLGFWKK-GAFFVVSTS----GHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 293 ~~~i~~~~~~~~~~~~~~~-~~il~~~~~----~~l~~yd~~t~~~~~v~ 337 (379)
...++. ......+....+ +.+++...+ ..++.||+++++.+.+.
T Consensus 364 ~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 364 EVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp EECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred EeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence 222221 111111111123 346555443 78999999998877665
No 169
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=40.72 E-value=1.8e+02 Score=25.06 Aligned_cols=97 Identities=9% Similarity=-0.011 Sum_probs=53.0
Q ss_pred cEEEEEECCCceE-EEecCCCCCCCCCcEEE-EECCeEEEEEEcCCCCEEEEEEEcC--CeEEEEEEECCCCCcccceEE
Q 039590 233 AVILSFHLGNDVF-EEVQEPYIPQSEPTIIG-VYNHSLCVLLSHNIENYYDIWVMKD--KCWIKQLSVGPFVGVQRPLGF 308 (379)
Q Consensus 233 ~~i~~fD~~~e~~-~~i~~P~~~~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~ 308 (379)
..|..+|..+.+- ..++..... -..+. .-+|.+.+.+.. +..+.||-+.. ........+........-+.+
T Consensus 77 g~v~iWd~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~s~~~--d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (340)
T 1got_B 77 GKLIIWDSYTTNKVHAIPLRSSW---VMTCAYAPSGNYVACGGL--DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF 151 (340)
T ss_dssp TEEEEEETTTCCEEEEEECSSSC---EEEEEECTTSSEEEEEET--TCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEE
T ss_pred CcEEEEECCCCCcceEeecCCcc---EEEEEECCCCCEEEEEeC--CCeEEEEECccCCCcceeEEEecCCCccEEEEEE
Confidence 4677778765543 223332211 11222 235666665655 67899998875 222223333322222222344
Q ss_pred eeCCeEEEEEeCCEEEEEeCCCCcEE
Q 039590 309 WKKGAFFVVSTSGHLLLYDPNTQEMR 334 (379)
Q Consensus 309 ~~~~~il~~~~~~~l~~yd~~t~~~~ 334 (379)
..++.++....++.+.+||+++++..
T Consensus 152 ~~~~~l~s~s~d~~i~~wd~~~~~~~ 177 (340)
T 1got_B 152 LDDNQIVTSSGDTTCALWDIETGQQT 177 (340)
T ss_dssp EETTEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCCcEEEEECCCcEEEEECCCCcEE
Confidence 55667666666889999999887644
No 170
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=40.70 E-value=2.5e+02 Score=26.84 Aligned_cols=114 Identities=15% Similarity=0.192 Sum_probs=59.8
Q ss_pred cccEEECceEeeEeecCCCCccEEEEEECCC--ceEEEe-cCCCCCC----CCCcEEEEECCeEEEEEEcCCCCEEEEEE
Q 039590 212 SGSLYVDGVCYWLSRFRNNDHAVILSFHLGN--DVFEEV-QEPYIPQ----SEPTIIGVYNHSLCVLLSHNIENYYDIWV 284 (379)
Q Consensus 212 ~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~--e~~~~i-~~P~~~~----~~~~~l~~~~G~L~l~~~~~~~~~i~iW~ 284 (379)
..++..+|.+|..+... .|.++|..+ +.|+.- ..|.... .....++..+|+|++.... .. |..
T Consensus 62 ~~P~v~~g~vyv~~~~~-----~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~d---g~--l~A 131 (582)
T 1flg_A 62 SQAIVSDGVIYVTASYS-----RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLD---AS--VVA 131 (582)
T ss_dssp CCCEEETTEEEEEETTT-----EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETT---TE--EEE
T ss_pred eccEEECCEEEEEcCCC-----CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCC---CE--EEE
Confidence 45688999999987544 599999864 557653 2222110 0011234566776654422 22 333
Q ss_pred EcC----CeEEEEEEECC-CCCc-ccceEEee--CCe-EEEEEe-------CCEEEEEeCCCCcEEE
Q 039590 285 MKD----KCWIKQLSVGP-FVGV-QRPLGFWK--KGA-FFVVST-------SGHLLLYDPNTQEMRD 335 (379)
Q Consensus 285 l~~----~~W~~~~~i~~-~~~~-~~~~~~~~--~~~-il~~~~-------~~~l~~yd~~t~~~~~ 335 (379)
++- ..|.....-.. ...+ ..|+.... +|+ ++++.. ++.+++||.+|++...
T Consensus 132 lD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W 198 (582)
T 1flg_A 132 LNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIW 198 (582)
T ss_dssp EESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEE
T ss_pred EECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEe
Confidence 332 46764321100 0011 34443322 122 444432 5789999999998665
No 171
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=40.61 E-value=1.9e+02 Score=25.38 Aligned_cols=108 Identities=8% Similarity=-0.048 Sum_probs=57.1
Q ss_pred CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEEEE--CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEE
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGVY--NHSLCVLLSHNIENYYDIWVMKDKCWIKQLS 295 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~~--~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~ 295 (379)
+|.|||..... ..|..+|+....-..+. .... .....++.- +|.|++.... ....|...-++. .-. ..
T Consensus 127 ~g~ly~~d~~~----~~I~~~~~dG~~~~~l~-~~~l-~~P~~iavdp~~g~ly~td~~-~~~~I~r~~~dG-~~~--~~ 196 (349)
T 3v64_C 127 HDKLYWTDSGT----SRIEVANLDGAHRKVLL-WQSL-EKPRAIALHPMEGTIYWTDWG-NTPRIEASSMDG-SGR--RI 196 (349)
T ss_dssp TTEEEEEETTT----TEEEEEETTSCSCEEEE-CTTC-SCEEEEEEETTTTEEEEEECS-SSCEEEEEETTS-CSC--EE
T ss_pred CCeEEEEcCCC----CeEEEEcCCCCceEEEE-eCCC-CCcceEEEecCcCeEEEeccC-CCCEEEEEeCCC-CCc--EE
Confidence 68999987653 58999998765433332 1111 112245544 6788877644 114444333332 111 11
Q ss_pred ECCCCCcccce--EEe-eCCeEEEEEe-CCEEEEEeCCCCcEEEe
Q 039590 296 VGPFVGVQRPL--GFW-KKGAFFVVST-SGHLLLYDPNTQEMRDL 336 (379)
Q Consensus 296 i~~~~~~~~~~--~~~-~~~~il~~~~-~~~l~~yd~~t~~~~~v 336 (379)
+- ...+..|- .+. .++.||+... .+.+..+|+.....+.+
T Consensus 197 ~~-~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~ 240 (349)
T 3v64_C 197 IA-DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 240 (349)
T ss_dssp SC-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred EE-ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEE
Confidence 11 12334454 444 2456666644 56899999876554443
No 172
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=40.43 E-value=2e+02 Score=25.73 Aligned_cols=185 Identities=11% Similarity=0.075 Sum_probs=88.8
Q ss_pred CeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEEEEcCCCccccc
Q 039590 119 DRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDL 198 (379)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 198 (379)
..+.+||..+++.+.|.... .......+.|..+ + ++... . .. . ...+.+++..+++.+.+
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~----------~~v~~~~~Spdg~-~-la~~s-~-~~----~--~~~i~~~d~~tg~~~~l 218 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSP----------QPLMSPAWSPDGS-K-LAYVT-F-ES----G--RSALVIQTLANGAVRQV 218 (415)
T ss_dssp EEEEEEETTSCSCEEEEEES----------SCEEEEEECTTSS-E-EEEEE-C-TT----S--SCEEEEEETTTCCEEEE
T ss_pred ceEEEEcCCCCCCEEEeCCC----------CcceeeEEcCCCC-E-EEEEE-e-cC----C--CcEEEEEECCCCcEEEe
Confidence 47999999876655443211 1134455555433 2 22221 1 00 0 13455999988876655
Q ss_pred ccccCCcceeeeccccEEECce-EeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEE-EECCeEEEEEEcCC
Q 039590 199 KSFKSDHYVMSFWSGSLYVDGV-CYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIG-VYNHSLCVLLSHNI 276 (379)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~-~~~G~L~l~~~~~~ 276 (379)
...+... ......-+|. |.+..... ....|..+|+.+.+...+..... ....+. .-+|+..++... .
T Consensus 219 ~~~~~~~-----~~~~~spdg~~la~~~~~~--g~~~i~~~d~~~~~~~~l~~~~~---~~~~~~~spdg~~l~~~s~-~ 287 (415)
T 2hqs_A 219 ASFPRHN-----GAPAFSPDGSKLAFALSKT--GSLNLYVMDLASGQIRQVTDGRS---NNTEPTWFPDSQNLAFTSD-Q 287 (415)
T ss_dssp ECCSSCE-----EEEEECTTSSEEEEEECTT--SSCEEEEEETTTCCEEECCCCSS---CEEEEEECTTSSEEEEEEC-T
T ss_pred ecCCCcc-----cCEEEcCCCCEEEEEEecC--CCceEEEEECCCCCEEeCcCCCC---cccceEECCCCCEEEEEEC-C
Confidence 4211110 1111112454 44443322 23468999998877654432111 111333 236764444443 1
Q ss_pred CCEEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEE-EeC---CEEEEEeCCCCcEEEeE
Q 039590 277 ENYYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVV-STS---GHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 277 ~~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~-~~~---~~l~~yd~~t~~~~~v~ 337 (379)
.....||.++- .. ...+........-+.+..+|+.++. ..+ ..+..||+++++.+.+.
T Consensus 288 ~g~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~ 351 (415)
T 2hqs_A 288 AGRPQVYKVNINGGA---PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS 351 (415)
T ss_dssp TSSCEEEEEETTSSC---CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC
T ss_pred CCCcEEEEEECCCCC---EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEec
Confidence 33445666553 22 1222211111122344556665444 332 48999999999887654
No 173
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=38.84 E-value=1.4e+02 Score=25.63 Aligned_cols=69 Identities=7% Similarity=0.060 Sum_probs=37.9
Q ss_pred CCeEEEEEEcCCCCEEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEEEe-CCEEEEEeCCCCcEEE
Q 039590 265 NHSLCVLLSHNIENYYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST-SGHLLLYDPNTQEMRD 335 (379)
Q Consensus 265 ~G~L~l~~~~~~~~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~-~~~l~~yd~~t~~~~~ 335 (379)
+|.+.+.+.. +..+.||-+.. ..+..+..+.....-..-+.+..++.+++... ++.+.+||..++.++.
T Consensus 118 ~g~~las~s~--D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~ 189 (330)
T 2hes_X 118 DGYYLATCSR--DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWEC 189 (330)
T ss_dssp TSCEEEEEET--TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEE
T ss_pred CCCEEEEEeC--CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeE
Confidence 3454444444 67888998854 45555555543322122233444565555443 6678888877665443
No 174
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=38.73 E-value=2.2e+02 Score=25.52 Aligned_cols=110 Identities=15% Similarity=0.188 Sum_probs=57.6
Q ss_pred EEECceEeeEeecCCCCccEEEEEECCCceE-EEecCCCCCCCCCcEEEEECCeEEEEEEcCCCCEEEEEEEcCCeEEEE
Q 039590 215 LYVDGVCYWLSRFRNNDHAVILSFHLGNDVF-EEVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQ 293 (379)
Q Consensus 215 v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~-~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~ 293 (379)
+..+|.....+... ..|..+|+.+.+- ..+..+.... ....-+..+|.+.+.+.. +..+.||-+........
T Consensus 325 ~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~ 397 (445)
T 2ovr_B 325 MELKDNILVSGNAD----STVKIWDIKTGQCLQTLQGPNKHQ-SAVTCLQFNKNFVITSSD--DGTVKLWDLKTGEFIRN 397 (445)
T ss_dssp EEEETTEEEEEETT----SCEEEEETTTCCEEEEECSTTSCS-SCEEEEEECSSEEEEEET--TSEEEEEETTTCCEEEE
T ss_pred EEEeCCEEEEEeCC----CeEEEEECCCCcEEEEEccCCCCC-CCEEEEEECCCEEEEEeC--CCeEEEEECCCCceeee
Confidence 33445443333332 4788999876553 3444443221 122333446777666665 78999999887433322
Q ss_pred EEEC---CCCCcccceEEeeCCeEEEEEe-CC----EEEEEeCCCC
Q 039590 294 LSVG---PFVGVQRPLGFWKKGAFFVVST-SG----HLLLYDPNTQ 331 (379)
Q Consensus 294 ~~i~---~~~~~~~~~~~~~~~~il~~~~-~~----~l~~yd~~t~ 331 (379)
.... .......-+.+..++.++.... ++ ++.+||.+..
T Consensus 398 ~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 398 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred eeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 2111 1111122344445555555543 33 4899988754
No 175
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=38.18 E-value=2.2e+02 Score=25.38 Aligned_cols=64 Identities=13% Similarity=0.179 Sum_probs=37.6
Q ss_pred CeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEEEE-eCCEEEEEeCCCCcE
Q 039590 266 HSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVS-TSGHLLLYDPNTQEM 333 (379)
Q Consensus 266 G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~-~~~~l~~yd~~t~~~ 333 (379)
|.+.+.+.. +..+.||-+.... .+..+........-+.+..++..++.. .++.+.+||.++++.
T Consensus 308 g~~l~sgs~--D~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~ 372 (410)
T 1vyh_C 308 GPFLLSGSR--DKTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 372 (410)
T ss_dssp CCEEEEEET--TSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC
T ss_pred CCEEEEEeC--CCeEEEEECCCCc--eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Confidence 556666655 6789999887521 222332222212234455566655554 477899999988763
No 176
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=37.24 E-value=9.9 Score=34.26 Aligned_cols=30 Identities=0% Similarity=-0.127 Sum_probs=18.9
Q ss_pred ccEEECceEeeEeecCCCCccEEEEEECCCc--eEEE
Q 039590 213 GSLYVDGVCYWLSRFRNNDHAVILSFHLGND--VFEE 247 (379)
Q Consensus 213 ~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e--~~~~ 247 (379)
..+..+|.+|.-+..+ .|.++|..+. .|+.
T Consensus 4 sP~v~~~~v~~gs~dg-----~v~a~d~~tG~~~W~~ 35 (369)
T 2hz6_A 4 TVTLPETLLFVSTLDG-----SLHAVSKRTGSIKWTL 35 (369)
T ss_dssp ----CTTEEEEEETTS-----EEEEEETTTCCEEEEE
T ss_pred CCeeeCCEEEEEcCCC-----EEEEEECCCCCEEEEe
Confidence 3456788888876554 8999997654 4654
No 177
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=36.90 E-value=2.4e+02 Score=25.64 Aligned_cols=111 Identities=13% Similarity=0.216 Sum_probs=61.1
Q ss_pred cccEEEC-----ceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEE-EECCeEEEEEEcCCCCEEEEEEE
Q 039590 212 SGSLYVD-----GVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIG-VYNHSLCVLLSHNIENYYDIWVM 285 (379)
Q Consensus 212 ~~~v~~~-----G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l 285 (379)
..++.++ |.|||.... ..|..+|+.+.+...+..+.. ....++ ..+|.|++.........-.+..+
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~-----~~I~~id~~~g~v~~~~~~~~---~P~giavd~dG~lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQR-----DAFRHVDFVNQYVDIKTTNIG---QCADVNFTLNGDMVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBT-----SCEEEEETTTTEEEEECCCCS---CEEEEEECTTCCEEEEECCSCTTSEEEEEE
T ss_pred CceEEEccccCCCEEEEEeCC-----CCEEEEECCCCEEEEeecCCC---CccEEEECCCCCEEEEcCCCCcccceEEEE
Confidence 4466666 899998654 479999998887776533211 122444 34677777665321112223333
Q ss_pred c-CCeEEEEEEECCCCCcccc--eEEee-CCeEEEEEe-CCEEEEEeCCCCcE
Q 039590 286 K-DKCWIKQLSVGPFVGVQRP--LGFWK-KGAFFVVST-SGHLLLYDPNTQEM 333 (379)
Q Consensus 286 ~-~~~W~~~~~i~~~~~~~~~--~~~~~-~~~il~~~~-~~~l~~yd~~t~~~ 333 (379)
. +..|.....+. .+..| +.+.. +|.+++... .++++.||+++++.
T Consensus 213 ~~~~~~~~~~~~~---~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~ 262 (433)
T 4hw6_A 213 TRASGFTERLSLC---NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL 262 (433)
T ss_dssp CGGGTTCCEEEEE---ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE
T ss_pred ECCCCeecccccc---ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE
Confidence 3 32232111111 11223 44544 567776654 56899999987776
No 178
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=36.71 E-value=2e+02 Score=24.45 Aligned_cols=138 Identities=9% Similarity=0.037 Sum_probs=74.9
Q ss_pred EEEEEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecCCCCccEEEEEECCCce-EEEecCCCCCCCCCcEEE
Q 039590 184 HVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDV-FEEVQEPYIPQSEPTIIG 262 (379)
Q Consensus 184 ~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~-~~~i~~P~~~~~~~~~l~ 262 (379)
.+.+++..+++=... .+.+ ...+...-...++.+|.+.... ..+.++|..+.+ -..++.+ ... +..|.
T Consensus 45 ~v~~iD~~tg~v~~~--i~l~--~~~fgeGi~~~g~~lyv~t~~~----~~v~viD~~t~~v~~~i~~g-~~~--g~glt 113 (266)
T 2iwa_A 45 SVRQVALQTGKVENI--HKMD--DSYFGEGLTLLNEKLYQVVWLK----NIGFIYDRRTLSNIKNFTHQ-MKD--GWGLA 113 (266)
T ss_dssp EEEEEETTTCCEEEE--EECC--TTCCEEEEEEETTEEEEEETTC----SEEEEEETTTTEEEEEEECC-SSS--CCEEE
T ss_pred EEEEEECCCCCEEEE--EecC--CCcceEEEEEeCCEEEEEEecC----CEEEEEECCCCcEEEEEECC-CCC--eEEEE
Confidence 344999888753221 1111 1111111233466899987654 689999998754 4556665 122 23455
Q ss_pred EECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCC---Cccc--ceEEeeCCeEEEEEe-CCEEEEEeCCCCcEE-E
Q 039590 263 VYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFV---GVQR--PLGFWKKGAFFVVST-SGHLLLYDPNTQEMR-D 335 (379)
Q Consensus 263 ~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~---~~~~--~~~~~~~~~il~~~~-~~~l~~yd~~t~~~~-~ 335 (379)
.-+++|++.. . .. .|++++-..-....+|.... .+.. -+.+. +|.++.... ++.+...|++|++.. .
T Consensus 114 ~Dg~~l~vs~-g--s~--~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~ 187 (266)
T 2iwa_A 114 TDGKILYGSD-G--TS--ILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGW 187 (266)
T ss_dssp ECSSSEEEEC-S--SS--EEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEE
T ss_pred ECCCEEEEEC-C--CC--eEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEE
Confidence 5455677543 2 33 56777653333344444211 1111 12233 677765553 679999999999865 4
Q ss_pred eEE
Q 039590 336 LGV 338 (379)
Q Consensus 336 v~~ 338 (379)
+.+
T Consensus 188 I~~ 190 (266)
T 2iwa_A 188 ILL 190 (266)
T ss_dssp EEC
T ss_pred EEC
Confidence 555
No 179
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=36.22 E-value=3.3e+02 Score=26.92 Aligned_cols=200 Identities=11% Similarity=-0.009 Sum_probs=0.0
Q ss_pred cccceecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeeccccccee
Q 039590 102 FLGGPFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYE 181 (379)
Q Consensus 102 ~~~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~ 181 (379)
.+....+|.|-+.+... +..+|+.|+++..++......... ...+..|....-+-...-
T Consensus 92 ~i~~d~~g~lWigT~~G--l~~yd~~~~~f~~~~~~~~~~~~~------i~~i~~d~~g~lwi~t~~------------- 150 (795)
T 4a2l_A 92 IVKTDSQGRVWIGTRDG--LSRYDEEKDIFQNFFYEKNGKHLQ------VNGIEEISPEQLLISTPE------------- 150 (795)
T ss_dssp EEEECTTSCEEEEESSC--EEEEETTTTEEEEECCEETTEECC------CCEEEEEETTEEEEEETT-------------
T ss_pred EEEECCCCCEEEEeCCc--hheeCCCCCeEEeccccccCCCce------EEEEEECCCCCEEEEECC-------------
Q ss_pred eeEEEEEEcCCCcccccccccCCcceee-eccccEEECceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcE
Q 039590 182 FAHVAMYNLRTNSWRDLKSFKSDHYVMS-FWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTI 260 (379)
Q Consensus 182 ~~~~~vyss~~~~W~~~~~~~~~~~~~~-~~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~ 260 (379)
... .|+.++++.+... ...+... ...-...-+|.++..+... .|..||..+.++..+...........-
T Consensus 151 gl~--~~~~~~~~~~~~~---~~~~~~~~i~~i~~d~~g~lwigt~~~-----Gl~~~~~~~~~~~~~~~~~~~~~i~~i 220 (795)
T 4a2l_A 151 GLI--MFDIKESKFIDDS---FSTAMHKTIASTLYRQGDQIYIGTSTD-----GLYTYSITQKTFEKVIPILGTKQIQAI 220 (795)
T ss_dssp EEE--EEETTTTEEECSS---SCHHHHTCCEEEEEEETTEEEEEESSS-----CEEEEETTTCCEEECC----CCCEEEE
T ss_pred ceE--EEECCCCEEEecc---CCCCCCcceEEEEECCCCCEEEEECCC-----CEEEEeCCCCeEEEecCCCCCCeeEEE
Q ss_pred EEEECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEE-----CCCCCcccceEEeeCCeEEEEEeCCEEEEEeCCCCcEEE
Q 039590 261 IGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSV-----GPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRD 335 (379)
Q Consensus 261 l~~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i-----~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~~ 335 (379)
+...+|.|.+.... ..+-++-.+...+.....- ........-+....+|.+.+.... .+..||+++++++.
T Consensus 221 ~~d~~g~lwigt~~---~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~ 296 (795)
T 4a2l_A 221 LQQSPTRIWVATEG---AGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFAS 296 (795)
T ss_dssp EEEETTEEEEEEBS---SCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEE
T ss_pred EEcCCCCEEEEECC---CCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEE
Q ss_pred e
Q 039590 336 L 336 (379)
Q Consensus 336 v 336 (379)
+
T Consensus 297 ~ 297 (795)
T 4a2l_A 297 Y 297 (795)
T ss_dssp E
T ss_pred E
No 180
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=35.36 E-value=2.2e+02 Score=24.59 Aligned_cols=137 Identities=9% Similarity=0.052 Sum_probs=66.5
Q ss_pred EEEEEcCC--CcccccccccCCcceeeeccccEEE--CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCc-
Q 039590 185 VAMYNLRT--NSWRDLKSFKSDHYVMSFWSGSLYV--DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPT- 259 (379)
Q Consensus 185 ~~vyss~~--~~W~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~- 259 (379)
..+|-+.. ..|+.+. .+... .-.+|.+ ++.+|..... ..|+.-+-..++|+.+..+.......+
T Consensus 15 ~~~~~s~d~g~~W~~~~-~~~~~-----~~~~v~~~~~~~~~~~G~~-----g~i~~s~DgG~tW~~~~~~~~~~~~~~~ 83 (327)
T 2xbg_A 15 RGSAIPALDYNPWEAIQ-LPTTA-----TILDMSFIDRHHGWLVGVN-----ATLMETRDGGQTWEPRTLVLDHSDYRFN 83 (327)
T ss_dssp ---CCCBCSSCCEEEEE-CSCSS-----CEEEEEESSSSCEEEEETT-----TEEEEESSTTSSCEECCCCCSCCCCEEE
T ss_pred cceeecCCCCCCceEee-cCCCC-----cEEEEEECCCCcEEEEcCC-----CeEEEeCCCCCCCeECCCCCCCCCccEE
Confidence 33776654 5898876 11111 1223333 3344433222 245554445578998876532211222
Q ss_pred EEEEECCeEEEEEEcCCCCEEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEEEeCCEEEEEeCCCCcEEEeE
Q 039590 260 IIGVYNHSLCVLLSHNIENYYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 260 ~l~~~~G~L~l~~~~~~~~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~~v~ 337 (379)
.+...++.++++... . .|+.-.| ..|+++......+.-..-+.+..++.+++....+.++.-+=..++|+.+.
T Consensus 84 ~i~~~~~~~~~~g~~---g--~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~ 158 (327)
T 2xbg_A 84 SVSFQGNEGWIVGEP---P--IMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALV 158 (327)
T ss_dssp EEEEETTEEEEEEET---T--EEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEE
T ss_pred EEEecCCeEEEEECC---C--eEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEee
Confidence 444556777765433 2 5666666 79998754322222112233344566665554444444333345677664
No 181
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=35.27 E-value=1.9e+02 Score=23.80 Aligned_cols=109 Identities=12% Similarity=-0.006 Sum_probs=57.7
Q ss_pred CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEEEE--CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEE
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGVY--NHSLCVLLSHNIENYYDIWVMKDKCWIKQLS 295 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~~--~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~ 295 (379)
+|.+||..... ..|..+|+....-..+ .+... .....++.. +|.|++.........+....++. .-.+..
T Consensus 90 ~~~lyv~d~~~----~~I~~~~~~g~~~~~~-~~~~~-~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~- 161 (267)
T 1npe_A 90 GRTIFWTDSQL----DRIEVAKMDGTQRRVL-FDTGL-VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRIL- 161 (267)
T ss_dssp TTEEEEEETTT----TEEEEEETTSCSCEEE-ECSSC-SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEE-
T ss_pred CCeEEEEECCC----CEEEEEEcCCCCEEEE-EECCC-CCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEE-
Confidence 58999987543 5899999876543333 22111 112245543 67888876432133444444443 211111
Q ss_pred ECCCCCcccc--eEEeeCC-eEEEEEe-CCEEEEEeCCCCcEEEe
Q 039590 296 VGPFVGVQRP--LGFWKKG-AFFVVST-SGHLLLYDPNTQEMRDL 336 (379)
Q Consensus 296 i~~~~~~~~~--~~~~~~~-~il~~~~-~~~l~~yd~~t~~~~~v 336 (379)
.. ..+..| +.+..++ .+|+... .+.+..+|++++..+.+
T Consensus 162 ~~--~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 204 (267)
T 1npe_A 162 AQ--DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV 204 (267)
T ss_dssp EC--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE
T ss_pred EE--CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE
Confidence 11 122334 4455444 5655544 57899999987655443
No 182
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=35.17 E-value=74 Score=25.08 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=28.3
Q ss_pred eEEEEecCCC-ceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEE
Q 039590 120 RLILCNLETK-ESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIH 169 (379)
Q Consensus 120 ~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 169 (379)
.+++.||.|+ +|+..-... ..+.+.+|...+.|+|+.+.
T Consensus 17 ~Vm~~D~~tk~~WvP~g~~~-----------~~V~i~~d~~rnsyRIvg~~ 56 (168)
T 1i2h_A 17 HVFQIDPNTKKNWVPTSKHA-----------VTVSYFYDSTRNVYRIISLD 56 (168)
T ss_dssp EEEEECTTSSCCSEESCSSC-----------EEEEEEEETTTTEEEEEEEE
T ss_pred EEEEECCCCCCceeecCCCC-----------eEEEEEEcCCCCEEEEEEcc
Confidence 4788999997 897543322 13667789888899999863
No 183
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=34.92 E-value=2e+02 Score=24.05 Aligned_cols=64 Identities=8% Similarity=0.207 Sum_probs=38.8
Q ss_pred CeEEEEEEcCCCCEEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCC---eEEEEE-eCCEEEEEeCCCC
Q 039590 266 HSLCVLLSHNIENYYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKG---AFFVVS-TSGHLLLYDPNTQ 331 (379)
Q Consensus 266 G~L~l~~~~~~~~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~---~il~~~-~~~~l~~yd~~t~ 331 (379)
|.+.+.+.. +..+.||-+.. ..|.....+........-+.+..++ .++... .++.+.+||+++.
T Consensus 170 ~~~l~sgs~--D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 170 SRKFVTGGA--DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp CCEEEEEET--TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred cceEEEEcC--CCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 445555554 67899998876 5676666665333222334444442 444443 4778999998764
No 184
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=34.70 E-value=2.2e+02 Score=24.47 Aligned_cols=96 Identities=6% Similarity=0.039 Sum_probs=52.7
Q ss_pred ccEEEEEECCCceEEEecCCCCCCCCCcEEE-EECCeEEEEEEcC--CCCEEEEEEEcC--CeEEEEEEECCCCCcccce
Q 039590 232 HAVILSFHLGNDVFEEVQEPYIPQSEPTIIG-VYNHSLCVLLSHN--IENYYDIWVMKD--KCWIKQLSVGPFVGVQRPL 306 (379)
Q Consensus 232 ~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~-~~~G~L~l~~~~~--~~~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~ 306 (379)
...+..+|..+.+.+.+... .. .....++ .-+|+..++.... ....+.+|.++. .....+..+.... ..|.
T Consensus 28 ~i~~~~~d~~~g~~~~~~~~-~~-~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~--~~p~ 103 (361)
T 3scy_A 28 GIYTFRFNEETGESLPLSDA-EV-ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG--ADPC 103 (361)
T ss_dssp EEEEEEEETTTCCEEEEEEE-EC-SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS--SCEE
T ss_pred CEEEEEEeCCCCCEEEeecc-cC-CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC--CCcE
Confidence 34667777787777665432 11 1112344 3456644444332 347899999986 5666655554221 2333
Q ss_pred EEeeCCeEEEEEe--CCEEEEEeCCCC
Q 039590 307 GFWKKGAFFVVST--SGHLLLYDPNTQ 331 (379)
Q Consensus 307 ~~~~~~~il~~~~--~~~l~~yd~~t~ 331 (379)
.+.-+++.++... ++.+.+||++++
T Consensus 104 ~~~~dg~~l~~~~~~~~~v~~~~~~~~ 130 (361)
T 3scy_A 104 YLTTNGKNIVTANYSGGSITVFPIGQD 130 (361)
T ss_dssp EEEECSSEEEEEETTTTEEEEEEBCTT
T ss_pred EEEECCCEEEEEECCCCEEEEEEeCCC
Confidence 3222566544443 668999998743
No 185
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=34.69 E-value=2.3e+02 Score=24.59 Aligned_cols=70 Identities=14% Similarity=0.160 Sum_probs=38.8
Q ss_pred EEEEE-CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECC---C---CCcccceEEeeCCeEEEEEe-C---CEEEEEeC
Q 039590 260 IIGVY-NHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGP---F---VGVQRPLGFWKKGAFFVVST-S---GHLLLYDP 328 (379)
Q Consensus 260 ~l~~~-~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~---~---~~~~~~~~~~~~~~il~~~~-~---~~l~~yd~ 328 (379)
.+... +| +.+++. .+..+.+|-+....-. ..+.. . ..-..-+.+..++.+++... + +.+.+||+
T Consensus 191 ~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~--~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~ 265 (397)
T 1sq9_A 191 SVDISERG-LIATGF--NNGTVQISELSTLRPL--YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET 265 (397)
T ss_dssp EEEECTTS-EEEEEC--TTSEEEEEETTTTEEE--EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred EEEECCCc-eEEEEe--CCCcEEEEECCCCcee--EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEEC
Confidence 44433 45 444443 3788999998863322 22322 1 11122344445666655544 5 78999999
Q ss_pred CCCcEE
Q 039590 329 NTQEMR 334 (379)
Q Consensus 329 ~t~~~~ 334 (379)
++++..
T Consensus 266 ~~~~~~ 271 (397)
T 1sq9_A 266 EFGERI 271 (397)
T ss_dssp TTCCEE
T ss_pred CCCccc
Confidence 887643
No 186
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=34.64 E-value=1.8e+02 Score=26.73 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=45.6
Q ss_pred cEEECceEeeEeecCC--CCccEEEEEECCCceEEEecCCCCCCCCCcEEEEECCeEEEEEEcC
Q 039590 214 SLYVDGVCYWLSRFRN--NDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGVYNHSLCVLLSHN 275 (379)
Q Consensus 214 ~v~~~G~lywl~~~~~--~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~ 275 (379)
--+.+|+||.++.... .-...+..-+...+.|+.+++|........-.+-.++.|+++....
T Consensus 344 vkyYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slrfp~nvHhtnlPFakvgD~l~mFgsER 407 (670)
T 3ju4_A 344 IKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSER 407 (670)
T ss_dssp EEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEECTTCCCSSCCCEEEETTEEEEEEECS
T ss_pred hhhhCCEEEEEecCcCCCCCcceeeeecccCCchhheeccccccccCCCcceeCCEEEEEeccc
Confidence 3578999999886543 2235677788888999999999776333334566788899998763
No 187
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=34.60 E-value=2e+02 Score=23.97 Aligned_cols=32 Identities=13% Similarity=0.339 Sum_probs=20.9
Q ss_pred eEEeeCCeEEEEE-eCCEEEEEeCCCC-cEEEeE
Q 039590 306 LGFWKKGAFFVVS-TSGHLLLYDPNTQ-EMRDLG 337 (379)
Q Consensus 306 ~~~~~~~~il~~~-~~~~l~~yd~~t~-~~~~v~ 337 (379)
+.+..++.+++.. .++.+.+||++++ .++.+.
T Consensus 312 ~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 312 VSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp EEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred EEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 4444566655554 4778999999885 455555
No 188
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=33.97 E-value=2.1e+02 Score=23.96 Aligned_cols=58 Identities=16% Similarity=0.203 Sum_probs=31.3
Q ss_pred CEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeE-EEEEeCCEEEEEeCCCCcEE-EeEE
Q 039590 278 NYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAF-FVVSTSGHLLLYDPNTQEMR-DLGV 338 (379)
Q Consensus 278 ~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i-l~~~~~~~l~~yd~~t~~~~-~v~~ 338 (379)
..+.+|-++... .+..+... ....-+.+..+|+. +....++.+.+||+++++.. .+..
T Consensus 260 ~~v~~~d~~~~~--~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 260 NVLESFDLEKNA--SIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp SEEEEEETTTTE--EEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCc--CcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 456666655422 22233211 11233455566764 44444789999999988754 3443
No 189
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=33.69 E-value=2.9e+02 Score=25.54 Aligned_cols=97 Identities=9% Similarity=0.127 Sum_probs=51.9
Q ss_pred cEEEEEECCCceEEEecCCCCCCCCCcEEEE-ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeC
Q 039590 233 AVILSFHLGNDVFEEVQEPYIPQSEPTIIGV-YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKK 311 (379)
Q Consensus 233 ~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~ 311 (379)
..|..+|...+....+..+... -..+.. -+|++.+.... +..+.+|-++.. .+..+.....-..-+.+..+
T Consensus 407 ~~v~~~~~~~~~~~~~~~~~~~---v~~~~~s~d~~~l~~~~~--d~~v~~w~~~~~---~~~~~~~~~~~v~~~~~spd 478 (577)
T 2ymu_A 407 KTVKLWNRNGQLLQTLTGHSSS---VWGVAFSPDDQTIASASD--DKTVKLWNRNGQ---LLQTLTGHSSSVRGVAFSPD 478 (577)
T ss_dssp SEEEEECTTCCEEEEEECCSSC---EEEEEECTTSSEEEEEET--TSEEEEEETTSC---EEEEEECCSSCEEEEEECTT
T ss_pred CEEEEEeCCCCEEEEecCCCCC---eEEEEECCCCCEEEEEcC--CCEEEEEECCCC---EEEEEcCCCCCEEEEEEcCC
Confidence 3677777665554444432221 113332 35666555554 678999986542 12223222222233455566
Q ss_pred CeEEEEE-eCCEEEEEeCCCCcEEEeE
Q 039590 312 GAFFVVS-TSGHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 312 ~~il~~~-~~~~l~~yd~~t~~~~~v~ 337 (379)
++++... .++.+.+||...+..+.+.
T Consensus 479 ~~~las~~~d~~i~iw~~~~~~~~~~~ 505 (577)
T 2ymu_A 479 GQTIASASDDKTVKLWNRNGQLLQTLT 505 (577)
T ss_dssp SCEEEEEETTSEEEEEETTSCEEEEEE
T ss_pred CCEEEEEeCCCEEEEEcCCCCEEEEEe
Confidence 7766654 4678999997665555444
No 190
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=33.64 E-value=2.2e+02 Score=24.23 Aligned_cols=101 Identities=12% Similarity=0.064 Sum_probs=52.4
Q ss_pred EEEEEECCCceEEEec-CCCCCCCCCcEEEEE-C--CeEEEEEEcCCCCEEEEEEEcC------CeEEEEEEECC-CCCc
Q 039590 234 VILSFHLGNDVFEEVQ-EPYIPQSEPTIIGVY-N--HSLCVLLSHNIENYYDIWVMKD------KCWIKQLSVGP-FVGV 302 (379)
Q Consensus 234 ~i~~fD~~~e~~~~i~-~P~~~~~~~~~l~~~-~--G~L~l~~~~~~~~~i~iW~l~~------~~W~~~~~i~~-~~~~ 302 (379)
.|..+|..+..+..+. +.... ..-..+... + +.+.+.+.. +..+.||-+.. ..|.....+.. ...-
T Consensus 176 ~i~iW~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~--D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~ 252 (330)
T 2hes_X 176 TVRIWKDYDDDWECVAVLNGHE-GTVWSSDFDKTEGVFRLCSGSD--DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQ 252 (330)
T ss_dssp CEEEEEEETTEEEEEEEECCCS-SCEEEEEECCSSSSCEEEEEET--TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSC
T ss_pred eEEEEECCCCCeeEEEEccCCC-CcEEEEEecCCCCeeEEEEEeC--CCeEEEEEecCCCccccceeEEeeecccccccc
Confidence 5666777666554432 21111 111123322 2 333334444 67899998864 35666555542 2221
Q ss_pred ccceEEeeCCeEEEEEeCCEEEEEeCCCCcEEEeE
Q 039590 303 QRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 303 ~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~~v~ 337 (379)
..-+.+..++.++-...++.+.+||.++++++.+.
T Consensus 253 v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 287 (330)
T 2hes_X 253 VYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFA 287 (330)
T ss_dssp EEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEE
T ss_pred eEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEe
Confidence 22233333444444455788999999888765543
No 191
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=32.60 E-value=3.7e+02 Score=26.45 Aligned_cols=142 Identities=8% Similarity=0.029 Sum_probs=71.8
Q ss_pred EEEEEcCCCcccccccccCCcceeeeccccEEE--CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCC-cEE
Q 039590 185 VAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYV--DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEP-TII 261 (379)
Q Consensus 185 ~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~-~~l 261 (379)
+..|+..++.|+......... .....-.++.. +|.+ |++..+ ..|..||..+.++..+..+....... ..+
T Consensus 471 l~~~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~d~~g~l-Wigt~~----~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i 544 (781)
T 3v9f_A 471 VFVIDLASKKVIHHYDTSNSQ-LLENFVRSIAQDSEGRF-WIGTFG----GGVGIYTPDMQLVRKFNQYEGFCSNTINQI 544 (781)
T ss_dssp EEEEESSSSSCCEEECTTTSS-CSCSCEEEEEECTTCCE-EEEESS----SCEEEECTTCCEEEEECTTTTCSCSCEEEE
T ss_pred eEEEeCCCCeEEecccCcccc-cccceeEEEEEcCCCCE-EEEEcC----CCEEEEeCCCCeEEEccCCCCCCCCeeEEE
Confidence 448888888887665111000 00001122332 4554 666552 26899999999998876543332222 244
Q ss_pred EE-ECCeEEEEEEcCCCCEE-EEEEEcCCeEEEEEEECCCCC-cccceEEeeCCeEEEEEeCCEEEEEeCCCCcEEEeE
Q 039590 262 GV-YNHSLCVLLSHNIENYY-DIWVMKDKCWIKQLSVGPFVG-VQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 262 ~~-~~G~L~l~~~~~~~~~i-~iW~l~~~~W~~~~~i~~~~~-~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~~v~ 337 (379)
.+ .+|.|.+... ..+ ..+-.+...+.....-+.++. ...-+....+|.+.+.. ...+..||+++++++.+.
T Consensus 545 ~~d~~g~lWi~T~----~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~Gl~~~~~~~~~~~~~~ 618 (781)
T 3v9f_A 545 YRSSKGQMWLATG----EGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST-NTGISCYITSKKCFYTYD 618 (781)
T ss_dssp EECTTSCEEEEET----TEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC-SSCEEEEETTTTEEEEEC
T ss_pred EECCCCCEEEEEC----CCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc-CCceEEEECCCCceEEec
Confidence 44 4577766542 122 222112233222111111111 11223333456676654 667999999999887764
No 192
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=32.04 E-value=2.4e+02 Score=24.04 Aligned_cols=111 Identities=12% Similarity=0.004 Sum_probs=66.2
Q ss_pred EEECceEeeEeecCCCCccEEEEEECCCceE-EEecCCCCCCCCCcEEEEECCeEEEEEEcCCCCEEEEEEEcCCeEEEE
Q 039590 215 LYVDGVCYWLSRFRNNDHAVILSFHLGNDVF-EEVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQ 293 (379)
Q Consensus 215 v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~-~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~ 293 (379)
...++.+|-+.... ..+.+||..+.+- ..++.+.. +..|+.-+++|++... .. .|++++-..=..+
T Consensus 102 t~~g~~Ly~ltw~~----~~v~V~D~~Tl~~~~ti~~~~e----GwGLt~Dg~~L~vSdG---s~--~l~~iDp~T~~v~ 168 (268)
T 3nok_A 102 ASDGERLYQLTWTE----GLLFTWSGMPPQRERTTRYSGE----GWGLCYWNGKLVRSDG---GT--MLTFHEPDGFALV 168 (268)
T ss_dssp EECSSCEEEEESSS----CEEEEEETTTTEEEEEEECSSC----CCCEEEETTEEEEECS---SS--EEEEECTTTCCEE
T ss_pred EEeCCEEEEEEccC----CEEEEEECCcCcEEEEEeCCCc----eeEEecCCCEEEEECC---CC--EEEEEcCCCCeEE
Confidence 44567888887654 6899999987554 56776533 2356666677777653 22 5677765222233
Q ss_pred EEECCCC---Ccc--cceEEeeCCeEEEEEe-CCEEEEEeCCCCcEE-EeEEe
Q 039590 294 LSVGPFV---GVQ--RPLGFWKKGAFFVVST-SGHLLLYDPNTQEMR-DLGVT 339 (379)
Q Consensus 294 ~~i~~~~---~~~--~~~~~~~~~~il~~~~-~~~l~~yd~~t~~~~-~v~~~ 339 (379)
.+|.... .+. .-+. +.+|.++.... ++.+...|++|+++. .+.+.
T Consensus 169 ~~I~V~~~g~~v~~lNeLe-~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 169 GAVQVKLRGQPVELINELE-CANGVIYANIWHSSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp EEEECEETTEECCCEEEEE-EETTEEEEEETTCSEEEEECTTTCBEEEEEECH
T ss_pred EEEEeCCCCcccccccccE-EeCCEEEEEECCCCeEEEEeCCCCcEEEEEECC
Confidence 3333111 111 1122 33778776553 779999999999965 46654
No 193
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=30.98 E-value=2.4e+02 Score=23.68 Aligned_cols=67 Identities=12% Similarity=0.143 Sum_probs=0.0
Q ss_pred CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEEEEe-CCEEEEEeCCCCcEEE
Q 039590 265 NHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST-SGHLLLYDPNTQEMRD 335 (379)
Q Consensus 265 ~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~-~~~l~~yd~~t~~~~~ 335 (379)
+|.+.+.+.. +..+.||-++... ....+.....-...+.+..++..++... ++.+.+||+++++...
T Consensus 24 ~~~~l~s~~~--dg~v~lWd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~ 91 (304)
T 2ynn_A 24 TEPWVLTTLY--SGRVELWNYETQV--EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV 91 (304)
T ss_dssp SSSEEEEEET--TSEEEEEETTTTE--EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCEEEEEcC--CCcEEEEECCCCc--eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEE
No 194
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=30.86 E-value=3.7e+02 Score=25.85 Aligned_cols=112 Identities=15% Similarity=0.112 Sum_probs=57.8
Q ss_pred cccEEECceEeeEee-cCCCCccEEEEEEC-CC--ceEEEe-cCCCC-----C-CCCCcEEEE--ECCe----EEEEEEc
Q 039590 212 SGSLYVDGVCYWLSR-FRNNDHAVILSFHL-GN--DVFEEV-QEPYI-----P-QSEPTIIGV--YNHS----LCVLLSH 274 (379)
Q Consensus 212 ~~~v~~~G~lywl~~-~~~~~~~~i~~fD~-~~--e~~~~i-~~P~~-----~-~~~~~~l~~--~~G~----L~l~~~~ 274 (379)
..++..+|.+|..+. .+ .|.++|. .+ +.|+.- ..+.. . ......++. .+|+ |++...
T Consensus 56 ~tP~v~~g~vyv~~~~~~-----~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~- 129 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSFPN-----NTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL- 129 (599)
T ss_dssp SCCEEETTEEEEECSTTT-----CEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-
T ss_pred eccEEECCEEEEEeCCCC-----EEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-
Confidence 456888999999875 44 7999998 54 457652 22110 0 000012333 4555 544322
Q ss_pred CCCCEEEEEEEcC----CeEEEEEEE-CCCCCc-ccceEEeeCCeEEEEEe------CCEEEEEeCCCCcEEE
Q 039590 275 NIENYYDIWVMKD----KCWIKQLSV-GPFVGV-QRPLGFWKKGAFFVVST------SGHLLLYDPNTQEMRD 335 (379)
Q Consensus 275 ~~~~~i~iW~l~~----~~W~~~~~i-~~~~~~-~~~~~~~~~~~il~~~~------~~~l~~yd~~t~~~~~ 335 (379)
.. .+..|+- ..|.....- .....+ ..|+. .++.|++... ++.+++||.+|++...
T Consensus 130 --dg--~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v--~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W 196 (599)
T 1w6s_A 130 --DG--NVAALNAETGETVWKVENSDIKVGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVW 196 (599)
T ss_dssp --TS--EEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEE
T ss_pred --CC--EEEEEECCCCCEEEeecCCCCCccceeecCCEE--ECCEEEEEecccccCCCCeEEEEECCCCcEEE
Confidence 12 2333432 456643210 000011 23433 2456655442 5799999999998764
No 195
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=30.65 E-value=2.5e+02 Score=23.79 Aligned_cols=65 Identities=14% Similarity=0.069 Sum_probs=37.2
Q ss_pred CeEEEEEEcCCCCEEEEEEEcC-C-----------eEEEEEEECCCCCcccceEEeeC--CeEEEEEe-CCEEEEEeCCC
Q 039590 266 HSLCVLLSHNIENYYDIWVMKD-K-----------CWIKQLSVGPFVGVQRPLGFWKK--GAFFVVST-SGHLLLYDPNT 330 (379)
Q Consensus 266 G~L~l~~~~~~~~~i~iW~l~~-~-----------~W~~~~~i~~~~~~~~~~~~~~~--~~il~~~~-~~~l~~yd~~t 330 (379)
|.+.+.+.. +..+.+|-+.. . ....+..+.....-..-+.+..+ +.+++... ++.+.+||+++
T Consensus 241 ~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~ 318 (366)
T 3k26_A 241 GDLILSKSC--ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV 318 (366)
T ss_dssp TTEEEEECS--SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS
T ss_pred CCEEEEEec--CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC
Confidence 665555544 78899999876 1 11223333222111122334445 66666544 77899999998
Q ss_pred Cc
Q 039590 331 QE 332 (379)
Q Consensus 331 ~~ 332 (379)
++
T Consensus 319 ~~ 320 (366)
T 3k26_A 319 ED 320 (366)
T ss_dssp SS
T ss_pred CC
Confidence 75
No 196
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=30.59 E-value=4.8e+02 Score=27.15 Aligned_cols=102 Identities=12% Similarity=0.153 Sum_probs=53.8
Q ss_pred CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEE-EECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEE
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIG-VYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSV 296 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i 296 (379)
+|.....+..+ .+..+|+.+............. .-..+. .-+|.+.+++.. +..+.+|-++.. .....+
T Consensus 809 dg~~l~~~~~~-----~v~~~d~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~--dg~v~vwd~~~~--~~~~~~ 878 (1249)
T 3sfz_A 809 DGDKIIVAAKN-----KVLLFDIHTSGLLAEIHTGHHS-TIQYCDFSPYDHLAVIALS--QYCVELWNIDSR--LKVADC 878 (1249)
T ss_dssp TSSEEEEEETT-----EEEEEETTTCCEEEEEECSSSS-CCCEEEECSSTTEEEEECS--SSCEEEEETTTT--EEEEEE
T ss_pred CCCEEEEEcCC-----cEEEEEecCCCceeEEcCCCCC-ceEEEEEcCCCCEEEEEeC--CCeEEEEEcCCC--ceeeec
Confidence 55555555443 7889998877654332211111 111333 345666666655 678999988762 122333
Q ss_pred CCCCCcccceEEeeCCeEEEE-EeCCEEEEEeCC
Q 039590 297 GPFVGVQRPLGFWKKGAFFVV-STSGHLLLYDPN 329 (379)
Q Consensus 297 ~~~~~~~~~~~~~~~~~il~~-~~~~~l~~yd~~ 329 (379)
.....-..-+.+..+|..++. ..++.+.+||++
T Consensus 879 ~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred CCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 322222233444455655444 346778888864
No 197
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=29.99 E-value=3.7e+02 Score=25.58 Aligned_cols=193 Identities=10% Similarity=0.043 Sum_probs=94.1
Q ss_pred cceEEEecCCCCeEEEEecCCCceec-CCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEE
Q 039590 108 DGIFCIHGPTNDRLILCNLETKESRT-LPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVA 186 (379)
Q Consensus 108 ~GLl~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~ 186 (379)
++++.+.....+.+.|+|+.|++... +|.... ..++.++++. .|-.+. . .+ ..+.
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~-----------p~~v~~SpDG-r~lyv~--~--~d--------g~V~ 221 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-----------VHISRLSASG-RYLFVI--G--RD--------GKVN 221 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSSC-----------EEEEEECTTS-CEEEEE--E--TT--------SEEE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCC-----------ccceEECCCC-CEEEEE--c--CC--------CeEE
Confidence 45666666666679999999987653 442221 2455666643 332222 1 11 1344
Q ss_pred EEEcCCCcccccccccCCcceeeeccccEEE-----CceEeeEeecCCCCccEEEEEECCCceE-EEecCCCC-CC----
Q 039590 187 MYNLRTNSWRDLKSFKSDHYVMSFWSGSLYV-----DGVCYWLSRFRNNDHAVILSFHLGNDVF-EEVQEPYI-PQ---- 255 (379)
Q Consensus 187 vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~-----~G~lywl~~~~~~~~~~i~~fD~~~e~~-~~i~~P~~-~~---- 255 (379)
+|+..+.+-+.+..++....|. ...+. +|..-+.+... ...+..+|..+.+- ..++.... ..
T Consensus 222 viD~~~~t~~~v~~i~~G~~P~----~ia~s~~~~pDGk~l~v~n~~---~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~ 294 (567)
T 1qks_A 222 MIDLWMKEPTTVAEIKIGSEAR----SIETSKMEGWEDKYAIAGAYW---PPQYVIMDGETLEPKKIQSTRGMTYDEQEY 294 (567)
T ss_dssp EEETTSSSCCEEEEEECCSEEE----EEEECCSTTCTTTEEEEEEEE---TTEEEEEETTTCCEEEEEECCEECTTTCCE
T ss_pred EEECCCCCCcEeEEEecCCCCc----eeEEccccCCCCCEEEEEEcc---CCeEEEEECCCCcEEEEEeccccccccccc
Confidence 8887522223333222222121 11222 56544444333 35788999876543 33444321 10
Q ss_pred --CCCc-EEEEE-CCeEEEEEEcCCCCEEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEEEe--CCEEEEEe
Q 039590 256 --SEPT-IIGVY-NHSLCVLLSHNIENYYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST--SGHLLLYD 327 (379)
Q Consensus 256 --~~~~-~l~~~-~G~L~l~~~~~~~~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~--~~~l~~yd 327 (379)
..+. .+... ++...++... .... ||+.+- ....++..|+.. ...+.+++..+|+.++... ++++.++|
T Consensus 295 ~p~~rva~i~~s~~~~~~vv~~~-~~g~--v~~vd~~~~~~~~v~~i~~~-~~~~d~~~~pdgr~~~va~~~sn~V~ViD 370 (567)
T 1qks_A 295 HPEPRVAAILASHYRPEFIVNVK-ETGK--ILLVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVID 370 (567)
T ss_dssp ESCCCEEEEEECSSSSEEEEEET-TTTE--EEEEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred cCCCceEEEEEcCCCCEEEEEec-CCCe--EEEEecCCCccceeeeeecc-ccccCceECCCCCEEEEEeCCCCeEEEEE
Confidence 0011 22222 2334444433 2333 333332 233334444322 1233455666777666543 68999999
Q ss_pred CCCCcEEE
Q 039590 328 PNTQEMRD 335 (379)
Q Consensus 328 ~~t~~~~~ 335 (379)
.+++++..
T Consensus 371 ~~t~kl~~ 378 (567)
T 1qks_A 371 TKEGKLVA 378 (567)
T ss_dssp TTTTEEEE
T ss_pred CCCCcEEE
Confidence 99998764
No 198
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=29.41 E-value=3e+02 Score=24.44 Aligned_cols=107 Identities=10% Similarity=0.107 Sum_probs=55.6
Q ss_pred ECceEeeEeecCCCCccEEEEEECCCceEE-EecCCCCCCCCCcEEEEECCeEEEEEEcCCCCEEEEEEEcC-CeEEEEE
Q 039590 217 VDGVCYWLSRFRNNDHAVILSFHLGNDVFE-EVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKD-KCWIKQL 294 (379)
Q Consensus 217 ~~G~lywl~~~~~~~~~~i~~fD~~~e~~~-~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~-~~W~~~~ 294 (379)
.+|.+...+... ..|..+|+.+.+.. .+.... ....-+..++.+.+.+.. +..+.+|-+.. .......
T Consensus 181 ~~~~~l~sg~~d----g~i~vwd~~~~~~~~~~~~h~----~~v~~l~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~ 250 (435)
T 1p22_A 181 YDERVIITGSSD----STVRVWDVNTGEMLNTLIHHC----EAVLHLRFNNGMMVTCSK--DRSIAVWDMASPTDITLRR 250 (435)
T ss_dssp CCSSEEEEEETT----SCEEEEESSSCCEEEEECCCC----SCEEEEECCTTEEEEEET--TSCEEEEECSSSSCCEEEE
T ss_pred ECCCEEEEEcCC----CeEEEEECCCCcEEEEEcCCC----CcEEEEEEcCCEEEEeeC--CCcEEEEeCCCCCCceeee
Confidence 355544444433 47888998876542 222211 112222334555555555 67899999887 3322222
Q ss_pred EECCCCCcccceEEeeCCeEEEEEeCCEEEEEeCCCCcEE
Q 039590 295 SVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMR 334 (379)
Q Consensus 295 ~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~ 334 (379)
.+........-+.+ .++.++....++.+.+||+++++..
T Consensus 251 ~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~ 289 (435)
T 1p22_A 251 VLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEFV 289 (435)
T ss_dssp EECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTTCCEE
T ss_pred EecCCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCcCcEE
Confidence 23222211111222 3333444455788999999887654
No 199
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=29.14 E-value=3.5e+02 Score=25.00 Aligned_cols=96 Identities=9% Similarity=0.124 Sum_probs=52.4
Q ss_pred cEEEEEECCCceEEEecCCCCCCCCCcEEEE-ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeC
Q 039590 233 AVILSFHLGNDVFEEVQEPYIPQSEPTIIGV-YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKK 311 (379)
Q Consensus 233 ~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~ 311 (379)
..|..+|...+....+...... -..+.. -+|++.+.... +..+.||-.+. . .+..+.....-..-+.+..+
T Consensus 448 ~~v~~w~~~~~~~~~~~~~~~~---v~~~~~spd~~~las~~~--d~~i~iw~~~~-~--~~~~~~~h~~~v~~l~~s~d 519 (577)
T 2ymu_A 448 KTVKLWNRNGQLLQTLTGHSSS---VRGVAFSPDGQTIASASD--DKTVKLWNRNG-Q--LLQTLTGHSSSVRGVAFSPD 519 (577)
T ss_dssp SEEEEEETTSCEEEEEECCSSC---EEEEEECTTSCEEEEEET--TSEEEEEETTS-C--EEEEEECCSSCEEEEEECTT
T ss_pred CEEEEEECCCCEEEEEcCCCCC---EEEEEEcCCCCEEEEEeC--CCEEEEEcCCC-C--EEEEEeCCCCCEEEEEEcCC
Confidence 3677788766655554432211 113332 36776666655 67899998553 1 22223222211223455567
Q ss_pred CeEEEEE-eCCEEEEEeCCCCcEEEe
Q 039590 312 GAFFVVS-TSGHLLLYDPNTQEMRDL 336 (379)
Q Consensus 312 ~~il~~~-~~~~l~~yd~~t~~~~~v 336 (379)
+.+++.. .++.+.+||...+.+..+
T Consensus 520 g~~l~s~~~dg~v~lwd~~~~~~~~~ 545 (577)
T 2ymu_A 520 GQTIASASDDKTVKLWNRNGQLLQTL 545 (577)
T ss_dssp SSCEEEEETTSEEEEECTTSCEEEEE
T ss_pred CCEEEEEECcCEEEEEeCCCCEEEEE
Confidence 7765554 477899999765544443
No 200
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=28.81 E-value=2.7e+02 Score=23.75 Aligned_cols=68 Identities=16% Similarity=0.215 Sum_probs=39.1
Q ss_pred CCeEEEEEEcCCCCEEEEEEEcCC----eE-EEEEEECCCCCcccceEEeeCCeEEEEE-eCCEEEEEeCCCCcEE
Q 039590 265 NHSLCVLLSHNIENYYDIWVMKDK----CW-IKQLSVGPFVGVQRPLGFWKKGAFFVVS-TSGHLLLYDPNTQEMR 334 (379)
Q Consensus 265 ~G~L~l~~~~~~~~~i~iW~l~~~----~W-~~~~~i~~~~~~~~~~~~~~~~~il~~~-~~~~l~~yd~~t~~~~ 334 (379)
+|.+.+.+.. +..+.||-+... .. .....+........-+.+..++.+++.. .++.+.+||+++++..
T Consensus 38 d~~~l~sgs~--D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~ 111 (343)
T 2xzm_R 38 DSPVLISGSR--DKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTY 111 (343)
T ss_dssp CCCEEEEEET--TSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEE
T ss_pred CCCEEEEEcC--CCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEE
Confidence 5666666655 678999988751 11 1222333222222234445566665554 4788999999887643
No 201
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=28.36 E-value=2.8e+02 Score=23.61 Aligned_cols=95 Identities=12% Similarity=0.065 Sum_probs=52.7
Q ss_pred cEEEEEECCCceEEE-ecCCCCCCCCCcEEE-EECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEee
Q 039590 233 AVILSFHLGNDVFEE-VQEPYIPQSEPTIIG-VYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWK 310 (379)
Q Consensus 233 ~~i~~fD~~~e~~~~-i~~P~~~~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~ 310 (379)
..|..+|+.+.+-.. +..... .-..+. .-+|++.+.+.. +..+.||-+.... .+..+.....-..-+.+..
T Consensus 144 g~v~i~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~lasg~~--dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~sp 216 (321)
T 3ow8_A 144 GKVNIFGVESGKKEYSLDTRGK---FILSIAYSPDGKYLASGAI--DGIINIFDIATGK--LLHTLEGHAMPIRSLTFSP 216 (321)
T ss_dssp SEEEEEETTTCSEEEEEECSSS---CEEEEEECTTSSEEEEEET--TSCEEEEETTTTE--EEEEECCCSSCCCEEEECT
T ss_pred CcEEEEEcCCCceeEEecCCCc---eEEEEEECCCCCEEEEEcC--CCeEEEEECCCCc--EEEEEcccCCceeEEEEcC
Confidence 467778877654322 221111 111233 235676666655 6789999887532 2333432222223355556
Q ss_pred CCeEEEEEe-CCEEEEEeCCCCcEE
Q 039590 311 KGAFFVVST-SGHLLLYDPNTQEMR 334 (379)
Q Consensus 311 ~~~il~~~~-~~~l~~yd~~t~~~~ 334 (379)
++.+++... ++.+.+||+++++..
T Consensus 217 d~~~l~s~s~dg~i~iwd~~~~~~~ 241 (321)
T 3ow8_A 217 DSQLLVTASDDGYIKIYDVQHANLA 241 (321)
T ss_dssp TSCEEEEECTTSCEEEEETTTCCEE
T ss_pred CCCEEEEEcCCCeEEEEECCCccee
Confidence 677666544 678999999887654
No 202
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=27.83 E-value=3.1e+02 Score=23.99 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=53.8
Q ss_pred cEEEEEECCCceEEE-ecCCCCCCCCCcEEEE-ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEE-CCCCCc-ccceEE
Q 039590 233 AVILSFHLGNDVFEE-VQEPYIPQSEPTIIGV-YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSV-GPFVGV-QRPLGF 308 (379)
Q Consensus 233 ~~i~~fD~~~e~~~~-i~~P~~~~~~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i-~~~~~~-~~~~~~ 308 (379)
..|..+|+.+.+... +...... ..-..+.. -+|.+.+.+.. +..+.||-+.... .+..+ ...... ..-+.+
T Consensus 154 g~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~ 228 (402)
T 2aq5_A 154 NVILVWDVGTGAAVLTLGPDVHP-DTIYSVDWSRDGALICTSCR--DKRVRVIEPRKGT--VVAEKDRPHEGTRPVHAVF 228 (402)
T ss_dssp SCEEEEETTTTEEEEEECTTTCC-SCEEEEEECTTSSCEEEEET--TSEEEEEETTTTE--EEEEEECSSCSSSCCEEEE
T ss_pred CEEEEEECCCCCccEEEecCCCC-CceEEEEECCCCCEEEEEec--CCcEEEEeCCCCc--eeeeeccCCCCCcceEEEE
Confidence 468889988776532 2111111 11113332 26776666665 6789999887632 22333 222211 223445
Q ss_pred eeCCeEEEEE----eCCEEEEEeCCCCc
Q 039590 309 WKKGAFFVVS----TSGHLLLYDPNTQE 332 (379)
Q Consensus 309 ~~~~~il~~~----~~~~l~~yd~~t~~ 332 (379)
..++.++... .++.+.+||+++.+
T Consensus 229 ~~~~~~l~~g~~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 229 VSEGKILTTGFSRMSERQVALWDTKHLE 256 (402)
T ss_dssp CSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred cCCCcEEEEeccCCCCceEEEEcCcccc
Confidence 5677777765 47789999998755
No 203
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=27.78 E-value=2.5e+02 Score=24.83 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=38.9
Q ss_pred CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECC--CCCcccceEEeeCCeEEEEE-eCCEEEEEeCCCCcEE
Q 039590 265 NHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGP--FVGVQRPLGFWKKGAFFVVS-TSGHLLLYDPNTQEMR 334 (379)
Q Consensus 265 ~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~--~~~~~~~~~~~~~~~il~~~-~~~~l~~yd~~t~~~~ 334 (379)
+|.+.+.+.. +..+.+|-+....- +..+.. ...-..-+.+..++..++.. .++.+.+||+++++..
T Consensus 181 ~~~~l~~~~~--d~~i~iwd~~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 249 (437)
T 3gre_A 181 EKSLLVALTN--LSRVIIFDIRTLER--LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI 249 (437)
T ss_dssp SCEEEEEEET--TSEEEEEETTTCCE--EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCEEEEEeC--CCeEEEEeCCCCee--eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE
Confidence 4666666655 67899998876221 222221 12222334445566666554 4678999999887654
No 204
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=27.64 E-value=3e+02 Score=23.73 Aligned_cols=74 Identities=8% Similarity=-0.007 Sum_probs=41.7
Q ss_pred cEEE--CceEeeEeecC-CCCccEEEEEECCCce-EEEecCCCCC---CCCCcEEEEE--CCeEEEEEEcC-CCCEEEEE
Q 039590 214 SLYV--DGVCYWLSRFR-NNDHAVILSFHLGNDV-FEEVQEPYIP---QSEPTIIGVY--NHSLCVLLSHN-IENYYDIW 283 (379)
Q Consensus 214 ~v~~--~G~lywl~~~~-~~~~~~i~~fD~~~e~-~~~i~~P~~~---~~~~~~l~~~--~G~L~l~~~~~-~~~~i~iW 283 (379)
++.+ +|.|||+.... ......|+.||+.+.+ ...+.+|... ....-.++.. +|.+++..... ....+.+|
T Consensus 71 gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~ 150 (343)
T 2qe8_A 71 GIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRV 150 (343)
T ss_dssp EEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEE
T ss_pred EEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEE
Confidence 4444 58899987430 0002489999999877 5667776432 1111255554 46777665410 14566666
Q ss_pred EEcC
Q 039590 284 VMKD 287 (379)
Q Consensus 284 ~l~~ 287 (379)
-++.
T Consensus 151 d~~~ 154 (343)
T 2qe8_A 151 DLQT 154 (343)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 6554
No 205
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=27.38 E-value=27 Score=20.76 Aligned_cols=15 Identities=40% Similarity=0.587 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHhcCC
Q 039590 7 NFPEDVMIEVLSRLS 21 (379)
Q Consensus 7 ~LP~Dll~~IL~rLP 21 (379)
.||.||-+|||+--.
T Consensus 23 ~LP~dIQ~Ells~~~ 37 (48)
T 2kwv_A 23 QLPADIQEEILSGKS 37 (48)
T ss_dssp TSCHHHHHHHTTCCC
T ss_pred HCcHHHHHHHHhcch
Confidence 588899888887543
No 206
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=26.86 E-value=3.2e+02 Score=23.92 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=38.2
Q ss_pred CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEEE-EeCCEEEEEeCCCCcEE
Q 039590 265 NHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVV-STSGHLLLYDPNTQEMR 334 (379)
Q Consensus 265 ~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~-~~~~~l~~yd~~t~~~~ 334 (379)
+|++.+.+.. +..+.||-++... .+..+.....-..-+.+..+++.++. ..++.+.+||+++++..
T Consensus 134 dg~~l~s~~~--d~~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~ 200 (393)
T 1erj_A 134 DGKFLATGAE--DRLIRIWDIENRK--IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS 200 (393)
T ss_dssp TSSEEEEEET--TSCEEEEETTTTE--EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred CCCEEEEEcC--CCeEEEEECCCCc--EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeE
Confidence 5666555555 6789999877532 22233322221223444455665554 44788999999887754
No 207
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=26.84 E-value=3.1e+02 Score=23.68 Aligned_cols=90 Identities=10% Similarity=0.004 Sum_probs=46.0
Q ss_pred cEEEEEECCCceEEEecCCCCCCCCCc-EEE-EECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEee
Q 039590 233 AVILSFHLGNDVFEEVQEPYIPQSEPT-IIG-VYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWK 310 (379)
Q Consensus 233 ~~i~~fD~~~e~~~~i~~P~~~~~~~~-~l~-~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~ 310 (379)
..|..+|+.+..-..+-..... .... .+. ..+|.+.+.+.. +..+.||-+.... .+..+.....-..-+.+..
T Consensus 262 ~~v~lwd~~~~~~~~~~~~~~~-~~~~~~~~~s~~g~~l~~g~~--d~~i~vwd~~~~~--~~~~l~~h~~~v~~l~~sp 336 (354)
T 2pbi_B 262 ATCRLYDLRADREVAIYSKESI-IFGASSVDFSLSGRLLFAGYN--DYTINVWDVLKGS--RVSILFGHENRVSTLRVSP 336 (354)
T ss_dssp SCEEEEETTTTEEEEEECCTTC-CSCEEEEEECTTSSEEEEEET--TSCEEEEETTTCS--EEEEECCCSSCEEEEEECT
T ss_pred CeEEEEECCCCcEEEEEcCCCc-ccceeEEEEeCCCCEEEEEEC--CCcEEEEECCCCc--eEEEEECCCCcEEEEEECC
Confidence 4688889877643222111111 1111 233 236777776665 6789999876521 2233332222222344555
Q ss_pred CCeEEEEE-eCCEEEEEe
Q 039590 311 KGAFFVVS-TSGHLLLYD 327 (379)
Q Consensus 311 ~~~il~~~-~~~~l~~yd 327 (379)
+|..+... .++.+.+||
T Consensus 337 dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 337 DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEcCCCCEEecC
Confidence 66655544 366777764
No 208
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=26.25 E-value=3.9e+02 Score=24.71 Aligned_cols=105 Identities=10% Similarity=-0.004 Sum_probs=55.8
Q ss_pred CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEEE-E----------CCeEEEEEEcCCCCEEEEEEEc
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGV-Y----------NHSLCVLLSHNIENYYDIWVMK 286 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~~-~----------~G~L~l~~~~~~~~~i~iW~l~ 286 (379)
+|.+...+... ..|..+|+.+.+-... +.......-..+.. - +|.+.+.+.. +..+.||-++
T Consensus 499 ~g~~l~~~~~d----g~i~iw~~~~~~~~~~-~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~--dg~i~iw~~~ 571 (615)
T 1pgu_A 499 SETYIAAGDVM----GKILLYDLQSREVKTS-RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL--DTNIFIYSVK 571 (615)
T ss_dssp TSSEEEEEETT----SCEEEEETTTTEEEEC-CSCCCSSCEEEEEECCCC------CCSCCEEEEEET--TSCEEEEESS
T ss_pred CCCEEEEcCCC----CeEEEeeCCCCcceeE-eecCCCCceeEEEEcCccccccccccCCCEEEEEcC--CCcEEEEECC
Confidence 55544444332 4788899877654322 11101111113332 2 6777776665 6789999998
Q ss_pred CCeEEEEEEECCCCCcccceEEeeCCeEEEE-EeCCEEEEEeCCCC
Q 039590 287 DKCWIKQLSVGPFVGVQRPLGFWKKGAFFVV-STSGHLLLYDPNTQ 331 (379)
Q Consensus 287 ~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~-~~~~~l~~yd~~t~ 331 (379)
... .....+.....-..-+.+..++. ++. ..++.+.+||++++
T Consensus 572 ~~~-~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 572 RPM-KIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp CTT-CCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC--
T ss_pred CCc-eechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeecC
Confidence 621 22233332222223355667778 444 44778999998763
No 209
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=26.17 E-value=2.9e+02 Score=23.10 Aligned_cols=70 Identities=16% Similarity=0.149 Sum_probs=41.0
Q ss_pred CeEEEEEEcCCCCEEEEEEEcC---CeEEEEEEECCCCCcccceEEeeCCeEEEEE-eCCEEEEEeCCCCcEEEeE
Q 039590 266 HSLCVLLSHNIENYYDIWVMKD---KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVS-TSGHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 266 G~L~l~~~~~~~~~i~iW~l~~---~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~-~~~~l~~yd~~t~~~~~v~ 337 (379)
|.+.+.+.. +..+.||-+.. ..-.....+.....-..-+.+..++..++.. .++.+..|+..........
T Consensus 51 ~~~l~S~s~--D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~ 124 (340)
T 4aow_A 51 PDMILSASR--DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF 124 (340)
T ss_dssp TTEEEEEET--TSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred CCEEEEEcC--CCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeee
Confidence 566665655 67899999886 2223333343222222334455566665554 4678888888877665444
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=26.04 E-value=4.7e+02 Score=25.52 Aligned_cols=142 Identities=14% Similarity=0.112 Sum_probs=77.3
Q ss_pred eeEEEEEEcCCC--c-ccccccccCCcceeeeccccE-EECceEeeEeecCCCCccEEEEEECCC--ceEEEecCCCCCC
Q 039590 182 FAHVAMYNLRTN--S-WRDLKSFKSDHYVMSFWSGSL-YVDGVCYWLSRFRNNDHAVILSFHLGN--DVFEEVQEPYIPQ 255 (379)
Q Consensus 182 ~~~~~vyss~~~--~-W~~~~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~~~~~i~~fD~~~--e~~~~i~~P~~~~ 255 (379)
..++++++..++ . |+.+.. .. ... ...+ .-++.+|+.+... .....|...|+.+ +.|+.+- |....
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~---~~-~~~--~~~~~~dg~~l~~~s~~~-~~~~~l~~~d~~~~~~~~~~l~-~~~~~ 364 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIP---DL-KAQ--WDFVDGVGDQLWFVSGDG-APLKKIVRVDLSGSTPRFDTVV-PESKD 364 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEEC---SS-SSC--EEEEEEETTEEEEEECTT-CTTCEEEEEECSSSSCEEEEEE-CCCSS
T ss_pred cceEEEEECCCCCCcccEEecC---CC-Cce--EEEEeccCCEEEEEECCC-CCCCEEEEEeCCCCccccEEEe-cCCCC
Confidence 346668888776 6 877751 11 000 1112 2456677776543 2246799999987 5777653 32221
Q ss_pred CCCcEEEEECCeEEEEEEcCCCCEEEEEEEcC-CeEEEEEEECCC-CCcccceEEeeCCe-EEEEEe----CCEEEEEeC
Q 039590 256 SEPTIIGVYNHSLCVLLSHNIENYYDIWVMKD-KCWIKQLSVGPF-VGVQRPLGFWKKGA-FFVVST----SGHLLLYDP 328 (379)
Q Consensus 256 ~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~-~~W~~~~~i~~~-~~~~~~~~~~~~~~-il~~~~----~~~l~~yd~ 328 (379)
.-..+...++.|.+.... .....||+++- .. ....+... ......+.+..+++ +++... ...++.||+
T Consensus 365 -~l~~~~~~~~~lv~~~~~--dg~~~l~~~~~~g~--~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 365 -NLESVGIAGNRLFASYIH--DAKSQVLAFDLDGK--PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp -EEEEEEEEBTEEEEEEEE--TTEEEEEEEETTSC--EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred -eEEEEEEECCEEEEEEEE--CCEEEEEEEeCCCC--ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 101334457888777766 56778888873 22 22333311 11111222233444 555433 358999999
Q ss_pred CCCcEEEe
Q 039590 329 NTQEMRDL 336 (379)
Q Consensus 329 ~t~~~~~v 336 (379)
++++.+.+
T Consensus 440 ~tg~~~~l 447 (741)
T 1yr2_A 440 ATAKTTPW 447 (741)
T ss_dssp TTTEEEEC
T ss_pred CCCcEEEE
Confidence 99887655
No 211
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=25.88 E-value=3.2e+02 Score=23.55 Aligned_cols=93 Identities=5% Similarity=-0.040 Sum_probs=53.4
Q ss_pred cEEEEEECCCceEEEecCCCCCCCCCcEEE-EECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeC
Q 039590 233 AVILSFHLGNDVFEEVQEPYIPQSEPTIIG-VYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKK 311 (379)
Q Consensus 233 ~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~ 311 (379)
..|..+|+.+.....+.........-..+. .-+|.+.+.+.. +..+.+|-+... ....+.....-..-+.+..+
T Consensus 141 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~---~~~~~~~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 141 GATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS--TGRLLLLGLDGH---EIFKEKLHKAKVTHAEFNPR 215 (383)
T ss_dssp TEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEET--TSEEEEEETTSC---EEEEEECSSSCEEEEEECSS
T ss_pred CEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECC--CCCEEEEECCCC---EEEEeccCCCcEEEEEECCC
Confidence 478999999877776655433211112333 345666666655 678999988542 22223222221223444455
Q ss_pred Ce-EEEEE-eCCEEEEEeCCC
Q 039590 312 GA-FFVVS-TSGHLLLYDPNT 330 (379)
Q Consensus 312 ~~-il~~~-~~~~l~~yd~~t 330 (379)
+. +++.. .++.+.+||+++
T Consensus 216 ~~~~l~s~~~d~~i~iwd~~~ 236 (383)
T 3ei3_B 216 CDWLMATSSVDATVKLWDLRN 236 (383)
T ss_dssp CTTEEEEEETTSEEEEEEGGG
T ss_pred CCCEEEEEeCCCEEEEEeCCC
Confidence 55 55544 477899999987
No 212
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=25.05 E-value=3.3e+02 Score=23.44 Aligned_cols=98 Identities=13% Similarity=0.080 Sum_probs=53.4
Q ss_pred cEEEEEECCCceE-EEecCCC-C-CCCCCc-EEEE-ECCeEEEEEEcCCC---CEEEEEEEcCCeEEEEEEECC------
Q 039590 233 AVILSFHLGNDVF-EEVQEPY-I-PQSEPT-IIGV-YNHSLCVLLSHNIE---NYYDIWVMKDKCWIKQLSVGP------ 298 (379)
Q Consensus 233 ~~i~~fD~~~e~~-~~i~~P~-~-~~~~~~-~l~~-~~G~L~l~~~~~~~---~~i~iW~l~~~~W~~~~~i~~------ 298 (379)
..|..+|+.+.+. ..+.... . ...... .+.. -+|.+.++... + ..+.+|-+... ..+..+..
T Consensus 207 g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~--d~~~g~i~i~d~~~~--~~~~~~~~~~~~~~ 282 (397)
T 1sq9_A 207 GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD--SNSFGCITLYETEFG--ERIGSLSVPTHSSQ 282 (397)
T ss_dssp SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE--ETTEEEEEEEETTTC--CEEEEECBC-----
T ss_pred CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEec--CCCCceEEEEECCCC--cccceeccCccccc
Confidence 5899999987654 3344310 1 001112 3332 25666665554 4 68999988762 12233332
Q ss_pred -------CCCcccceEEeeCCeEEEEE-eCCEEEEEeCCCCcEE
Q 039590 299 -------FVGVQRPLGFWKKGAFFVVS-TSGHLLLYDPNTQEMR 334 (379)
Q Consensus 299 -------~~~~~~~~~~~~~~~il~~~-~~~~l~~yd~~t~~~~ 334 (379)
...-..-+.+..++..++.. .++.+.+||+++++..
T Consensus 283 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 283 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 326 (397)
T ss_dssp ---CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred ccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCcee
Confidence 11112234445566665554 4789999999887644
No 213
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=24.97 E-value=3.7e+02 Score=23.92 Aligned_cols=97 Identities=5% Similarity=0.018 Sum_probs=48.4
Q ss_pred cEEEEEECCCce--EEEecCCCCCCCCCcEEEE-ECC-eEEEEEEcCCCCEEEEEEEcC-Ce-----------EEEEEEE
Q 039590 233 AVILSFHLGNDV--FEEVQEPYIPQSEPTIIGV-YNH-SLCVLLSHNIENYYDIWVMKD-KC-----------WIKQLSV 296 (379)
Q Consensus 233 ~~i~~fD~~~e~--~~~i~~P~~~~~~~~~l~~-~~G-~L~l~~~~~~~~~i~iW~l~~-~~-----------W~~~~~i 296 (379)
..|..+|+.+.. ...+..... .-..+.. -+| .+.+.+.. +..+.||-+.. .. -..+...
T Consensus 300 g~v~vwd~~~~~~~~~~~~~h~~---~v~~i~~sp~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 374 (430)
T 2xyi_A 300 KTVALWDLRNLKLKLHSFESHKD---EIFQVQWSPHNETILASSGT--DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 374 (430)
T ss_dssp SEEEEEETTCTTSCSEEEECCSS---CEEEEEECSSCTTEEEEEET--TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEEC
T ss_pred CeEEEEeCCCCCCCeEEeecCCC---CEEEEEECCCCCCEEEEEeC--CCcEEEEeCCCCccccCccccccCCcceEEEc
Confidence 478899987632 222222111 1113332 234 45555554 67899998875 11 0122222
Q ss_pred CCCCCcccceEEeeCCe-EEEEE-eCCEEEEEeCCCCcEE
Q 039590 297 GPFVGVQRPLGFWKKGA-FFVVS-TSGHLLLYDPNTQEMR 334 (379)
Q Consensus 297 ~~~~~~~~~~~~~~~~~-il~~~-~~~~l~~yd~~t~~~~ 334 (379)
........-+.+..++. +++.. .++.+.+|++.++.+.
T Consensus 375 ~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~~ 414 (430)
T 2xyi_A 375 GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYN 414 (430)
T ss_dssp CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHHC
T ss_pred CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccccc
Confidence 22222123344455565 54443 4778899988765443
No 214
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=24.79 E-value=3.1e+02 Score=23.00 Aligned_cols=67 Identities=10% Similarity=0.014 Sum_probs=39.1
Q ss_pred CCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeE-EEEEe-CCEEEEEeCCCCcEE
Q 039590 265 NHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAF-FVVST-SGHLLLYDPNTQEMR 334 (379)
Q Consensus 265 ~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i-l~~~~-~~~l~~yd~~t~~~~ 334 (379)
++.+++.... ...+.+|-++..........+.. .-..-+.+..+|+. ++... ++.+..||+++++..
T Consensus 10 ~~~~~v~~~~--~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~ 78 (349)
T 1jmx_B 10 GHEYMIVTNY--PNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT 78 (349)
T ss_dssp TCEEEEEEET--TTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCEEEEEeCC--CCeEEEEECCCCcEEEEEecCCC-CCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE
Confidence 4566666655 67788887765433333333210 01233455666764 44443 678999999988765
No 215
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=24.72 E-value=1e+02 Score=22.41 Aligned_cols=42 Identities=12% Similarity=0.020 Sum_probs=28.9
Q ss_pred eEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEE
Q 039590 120 RLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIH 169 (379)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~ 169 (379)
.+++.||.|++|. |...... + .+.+.+..|...+.|.|+...
T Consensus 12 ~V~~~d~~~~~W~--p~~~g~~--g----vs~V~~~~d~~~~~yrI~~~~ 53 (115)
T 1egx_A 12 TVMLYDDGNKRWL--PAGTGPQ--A----FSRVQIYHNPTANSFRVVGRK 53 (115)
T ss_dssp ECBEECTTTSSCC--BSSCSCC--C----CEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEcCCCCcee--ECCCCCC--C----ccEEEEEEeCCCCEEEEEEEE
Confidence 3788899999986 4332100 1 124788899888999998874
No 216
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=24.08 E-value=3.2e+02 Score=22.86 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=17.9
Q ss_pred EeeCCeEEEEEeCCEEEEEeCCCCcEEEeE
Q 039590 308 FWKKGAFFVVSTSGHLLLYDPNTQEMRDLG 337 (379)
Q Consensus 308 ~~~~~~il~~~~~~~l~~yd~~t~~~~~v~ 337 (379)
...+|.+++...++.++.||.+.+......
T Consensus 222 ~~~~g~l~v~t~~~gl~~~~~~g~~~~~~~ 251 (330)
T 3hxj_A 222 ISEDGTIYVTSLDGHLYAINPDGTEKWRFK 251 (330)
T ss_dssp ECTTSCEEEEETTTEEEEECTTSCEEEEEE
T ss_pred ECCCCeEEEEcCCCeEEEECCCCCEeEEee
Confidence 344556666655677777776555554443
No 217
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=24.03 E-value=3.6e+02 Score=25.99 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=0.0
Q ss_pred CCeEEEEEEcCCCCEEEEEEEcC---CeEEEEEEECCCCCcccceEEeeCCeEEEEEe-CCEEEEEeCCCCcEEE
Q 039590 265 NHSLCVLLSHNIENYYDIWVMKD---KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST-SGHLLLYDPNTQEMRD 335 (379)
Q Consensus 265 ~G~L~l~~~~~~~~~i~iW~l~~---~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~-~~~l~~yd~~t~~~~~ 335 (379)
++.+.+.+.. +..+.||-+.. ..-.....+........-+.+..++.+++... ++.+.+||+++++...
T Consensus 394 ~~~~l~s~s~--D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~ 466 (694)
T 3dm0_A 394 NADIIVSASR--DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR 466 (694)
T ss_dssp CCSEEEEEET--TSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred CCCEEEEEeC--CCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCccee
No 218
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=23.35 E-value=4e+02 Score=23.78 Aligned_cols=203 Identities=10% Similarity=-0.043 Sum_probs=0.0
Q ss_pred cceecceEEEecCCCCeEEEEecC--CCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeeccccccee
Q 039590 104 GGPFDGIFCIHGPTNDRLILCNLE--TKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYE 181 (379)
Q Consensus 104 ~~s~~GLl~~~~~~~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~ 181 (379)
..+.+-.|++.+.....+.|||.. +++....-......... ..+.+.+.....-+..-
T Consensus 110 ~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v-------~~~~~sp~~~~l~~~~~------------- 169 (450)
T 2vdu_B 110 LTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRP-------NAISIAEDDTTVIIADK------------- 169 (450)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCE-------EEEEECTTSSEEEEEET-------------
T ss_pred EcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCc-------eEEEEcCCCCEEEEEeC-------------
Q ss_pred eeEEEEEEcCCCcccc----cccccCCcceeeeccccEEEC---ceEeeEeecCCCCccEEEEEECCCceEEEecCCCCC
Q 039590 182 FAHVAMYNLRTNSWRD----LKSFKSDHYVMSFWSGSLYVD---GVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIP 254 (379)
Q Consensus 182 ~~~~~vyss~~~~W~~----~~~~~~~~~~~~~~~~~v~~~---G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~ 254 (379)
...+.+++..++.-.. .- .........-...-+ |.+...+... ..|..+|+.+.+....-+....
T Consensus 170 ~g~v~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~sp~~~~~~~l~s~~~d----~~i~vwd~~~~~~~~~~~~~h~ 241 (450)
T 2vdu_B 170 FGDVYSIDINSIPEEKFTQEPI----LGHVSMLTDVHLIKDSDGHQFIITSDRD----EHIKISHYPQCFIVDKWLFGHK 241 (450)
T ss_dssp TSEEEEEETTSCCCSSCCCCCS----EECSSCEEEEEEEECTTSCEEEEEEETT----SCEEEEEESCTTCEEEECCCCS
T ss_pred CCcEEEEecCCcccccccceee----ecccCceEEEEEcCCCCCCcEEEEEcCC----CcEEEEECCCCceeeeeecCCC
Q ss_pred CCCCcEEEEECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEEC-----------------------CCCCcccceEEeeC
Q 039590 255 QSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVG-----------------------PFVGVQRPLGFWKK 311 (379)
Q Consensus 255 ~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~-----------------------~~~~~~~~~~~~~~ 311 (379)
......... +|.+.+.+.. +..+.||-+....-....... ....-..-+.+..+
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 318 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGG--DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN 318 (450)
T ss_dssp SCEEEEEEC-STTEEEEEES--SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred CceEEEEEC-CCCEEEEEeC--CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Q ss_pred CeEEEEEe--CCEEEEEeC---CCCcEEEeE
Q 039590 312 GAFFVVST--SGHLLLYDP---NTQEMRDLG 337 (379)
Q Consensus 312 ~~il~~~~--~~~l~~yd~---~t~~~~~v~ 337 (379)
+..++... ++.+.+||+ ..++++.+.
T Consensus 319 ~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~ 349 (450)
T 2vdu_B 319 LPFVAFFVEATKCIIILEMSEKQKGDLALKQ 349 (450)
T ss_dssp SSEEEEEETTCSEEEEEEECSSSTTCEEEEE
T ss_pred CCEEEEEECCCCeEEEEEeccCCCCceeecc
No 219
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=23.29 E-value=3.5e+02 Score=23.02 Aligned_cols=111 Identities=13% Similarity=0.127 Sum_probs=60.4
Q ss_pred CceEeeEeecCCCCccEEEEEECCCc--eEEEecCCCCC------CCCCcEEEEE--CCeEEEEEEcCCCCEEEEEEEcC
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGND--VFEEVQEPYIP------QSEPTIIGVY--NHSLCVLLSHNIENYYDIWVMKD 287 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e--~~~~i~~P~~~------~~~~~~l~~~--~G~L~l~~~~~~~~~i~iW~l~~ 287 (379)
+|.+|+..... ..|..||.... ....+.-+... ......++.. +|.|++.... ....+.+|-.+
T Consensus 101 ~g~l~v~d~~~----~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~-~~~~I~~~~~~- 174 (329)
T 3fvz_A 101 DGNYWVTDVAL----HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY-CNSRIVQFSPS- 174 (329)
T ss_dssp TSCEEEEETTT----TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS-SCCEEEEECTT-
T ss_pred CCCEEEEECCC----CEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC-CCCeEEEEcCC-
Confidence 68887765443 58999998765 33444321110 1122256654 6889888752 24566666533
Q ss_pred CeEEEEEE-ECC-----CCCcccc--eEEeeC-CeEEEEEe-CCEEEEEeCCCCcEE
Q 039590 288 KCWIKQLS-VGP-----FVGVQRP--LGFWKK-GAFFVVST-SGHLLLYDPNTQEMR 334 (379)
Q Consensus 288 ~~W~~~~~-i~~-----~~~~~~~--~~~~~~-~~il~~~~-~~~l~~yd~~t~~~~ 334 (379)
........ -.. ...+..| +.+..+ +.+++... ++.+..||++++++.
T Consensus 175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~ 231 (329)
T 3fvz_A 175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV 231 (329)
T ss_dssp SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 22222111 111 1122334 445555 67776654 678999999966644
No 220
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=22.64 E-value=4.6e+02 Score=24.22 Aligned_cols=99 Identities=12% Similarity=0.150 Sum_probs=51.8
Q ss_pred cEEEEEECCCceEEE-ecCCC-CCCCCCcEEEEECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCC--CcccceEE
Q 039590 233 AVILSFHLGNDVFEE-VQEPY-IPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFV--GVQRPLGF 308 (379)
Q Consensus 233 ~~i~~fD~~~e~~~~-i~~P~-~~~~~~~~l~~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~--~~~~~~~~ 308 (379)
..|..+|+.+.+... +..+. .....-..+...+|.+.+.+.. +..+.+|-+....-.......... .....+.+
T Consensus 229 g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (615)
T 1pgu_A 229 RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA--DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA 306 (615)
T ss_dssp CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEET--TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE
T ss_pred CeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcC--CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe
Confidence 478889988765433 31210 1111111333227777777765 678999988863333333222111 11111222
Q ss_pred eeCCeEEEEEeCCEEEEEeCCCCcE
Q 039590 309 WKKGAFFVVSTSGHLLLYDPNTQEM 333 (379)
Q Consensus 309 ~~~~~il~~~~~~~l~~yd~~t~~~ 333 (379)
..++.++....++.+..||+++++.
T Consensus 307 ~~~~~l~~~~~~g~i~~~d~~~~~~ 331 (615)
T 1pgu_A 307 TGNGRIISLSLDGTLNFYELGHDEV 331 (615)
T ss_dssp EETTEEEEEETTSCEEEEETTEEEE
T ss_pred CCCCeEEEEECCCCEEEEECCCCcE
Confidence 2333455555588999999987443
No 221
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=22.49 E-value=5.3e+02 Score=24.89 Aligned_cols=113 Identities=12% Similarity=0.046 Sum_probs=59.7
Q ss_pred CceEeeEeecCCCCccEEEEEECCCc---eEEEecCCCCCCCCCc-EEEEE-CCeEEEEEEcCCCCEEEEEEEc--CCeE
Q 039590 218 DGVCYWLSRFRNNDHAVILSFHLGND---VFEEVQEPYIPQSEPT-IIGVY-NHSLCVLLSHNIENYYDIWVMK--DKCW 290 (379)
Q Consensus 218 ~G~lywl~~~~~~~~~~i~~fD~~~e---~~~~i~~P~~~~~~~~-~l~~~-~G~L~l~~~~~~~~~i~iW~l~--~~~W 290 (379)
++.+|+.+... .....|...|+.+. .|+.+-.+... ... .+... +|.|.+.... .....||+++ +..
T Consensus 297 g~~l~~~s~~~-~~~~~l~~~d~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~- 370 (710)
T 2xdw_A 297 GTVFTFKTNRH-SPNYRLINIDFTDPEESKWKVLVPEHEK--DVLEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGA- 370 (710)
T ss_dssp TTEEEEEECTT-CTTCEEEEEETTSCCGGGCEEEECCCSS--CEEEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCC-
T ss_pred CCEEEEEECCC-CCCCEEEEEeCCCCCcccceeccCCCCC--CeEEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCC-
Confidence 45677766433 22457999999875 46665433221 111 34445 6777777665 4455566554 322
Q ss_pred EEEEEECCCCCcccceEEeeCC-eEEEEEe----CCEEEEEeCCCCc--EEEeE
Q 039590 291 IKQLSVGPFVGVQRPLGFWKKG-AFFVVST----SGHLLLYDPNTQE--MRDLG 337 (379)
Q Consensus 291 ~~~~~i~~~~~~~~~~~~~~~~-~il~~~~----~~~l~~yd~~t~~--~~~v~ 337 (379)
....+.........+.+..++ .+++... ...++.||+++++ .+.+.
T Consensus 371 -~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l~ 423 (710)
T 2xdw_A 371 -LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFR 423 (710)
T ss_dssp -EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEE
T ss_pred -EEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCccceEEee
Confidence 223344222211122222344 4554433 3689999999887 55444
No 222
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=22.45 E-value=1.1e+02 Score=23.11 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=22.4
Q ss_pred eEEEEEeCCEEEEEeCCCCcEEEeEEeec
Q 039590 313 AFFVVSTSGHLLLYDPNTQEMRDLGVTCF 341 (379)
Q Consensus 313 ~il~~~~~~~l~~yd~~t~~~~~v~~~~~ 341 (379)
+|+.....-.++.||..+++|++..++|.
T Consensus 30 ~Il~~a~~v~vY~f~~~~~~W~K~~iEG~ 58 (134)
T 2lyd_A 30 EIVDSSSHVAFYTFNSSQNEWEKTDVEGA 58 (134)
T ss_dssp EEEEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred HHHhhCCeEEEEEecCCcCceeEcCCcce
Confidence 56666556677888999999999998764
No 223
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.44 E-value=69 Score=21.27 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=15.4
Q ss_pred EEEEeCCEEEEEeCCCCcEE
Q 039590 315 FVVSTSGHLLLYDPNTQEMR 334 (379)
Q Consensus 315 l~~~~~~~l~~yd~~t~~~~ 334 (379)
.....++++++||..|++-.
T Consensus 24 ~v~T~dGR~fyyN~~Tk~S~ 43 (73)
T 2dk7_A 24 VVWTGDERVFFYNPTTRLSM 43 (73)
T ss_dssp EEEESSSCEEEEETTTTEEC
T ss_pred EEECCCCCEEEecCccccee
Confidence 34456899999999998744
No 224
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=21.97 E-value=3.4e+02 Score=22.50 Aligned_cols=101 Identities=7% Similarity=-0.009 Sum_probs=52.6
Q ss_pred cEEEEEECCCceE-EEecCCCCCCCCCcEEE-EECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCC---CcccceE
Q 039590 233 AVILSFHLGNDVF-EEVQEPYIPQSEPTIIG-VYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFV---GVQRPLG 307 (379)
Q Consensus 233 ~~i~~fD~~~e~~-~~i~~P~~~~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~---~~~~~~~ 307 (379)
..|..+|+.+.+. ..+..+.... ....+. .-+|+..++... ....+.+|-+....-.......... .-...+.
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~-~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGP-TPMVPMVAPGGRIAYATVN-KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA 88 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTT-CCCCEEECTTSSEEEEEET-TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEE
T ss_pred CeEEEEECCCCcEEEEEEcCCCCC-CccceEEcCCCCEEEEEeC-CCCeEEEEECCCCCeEeeEEcCCcccccccccceE
Confidence 4788899887654 3455554110 011233 335643333333 2567888876653222222222100 0123355
Q ss_pred EeeCCeEEEEE-------------eCCEEEEEeCCCCcEEE
Q 039590 308 FWKKGAFFVVS-------------TSGHLLLYDPNTQEMRD 335 (379)
Q Consensus 308 ~~~~~~il~~~-------------~~~~l~~yd~~t~~~~~ 335 (379)
+..+|+.++.. .++.+.+||+++++...
T Consensus 89 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 129 (337)
T 1pby_B 89 LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK 129 (337)
T ss_dssp ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE
T ss_pred ECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEE
Confidence 56667554444 35899999999887553
No 225
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=21.79 E-value=3.7e+02 Score=22.82 Aligned_cols=204 Identities=9% Similarity=-0.014 Sum_probs=90.6
Q ss_pred ecceEEEecCCCCeEEEEecCCC--ceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeE
Q 039590 107 FDGIFCIHGPTNDRLILCNLETK--ESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAH 184 (379)
Q Consensus 107 ~~GLl~~~~~~~~~~~V~NP~T~--~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~ 184 (379)
.+|-+.+.+....++.++|+.++ ....+......... ........++.+|+..+...|..- +. ...
T Consensus 100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~-~~~~~~P~~ia~~~~~g~lyv~d~---~~--------~~~ 167 (329)
T 3fvz_A 100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSD-QNHFCQPTDVAVEPSTGAVFVSDG---YC--------NSR 167 (329)
T ss_dssp TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCS-TTCCSSEEEEEECTTTCCEEEEEC---SS--------CCE
T ss_pred CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCC-ccccCCCcEEEEeCCCCeEEEEeC---CC--------CCe
Confidence 45555555554557888888665 23333221100000 000123467888874444333221 01 123
Q ss_pred EEEEEcCCCcccccccccCC--cceeee-ccccEEE--C-ceEeeEeecCCCCccEEEEEECCCceE-EEecCCCCCCCC
Q 039590 185 VAMYNLRTNSWRDLKSFKSD--HYVMSF-WSGSLYV--D-GVCYWLSRFRNNDHAVILSFHLGNDVF-EEVQEPYIPQSE 257 (379)
Q Consensus 185 ~~vyss~~~~W~~~~~~~~~--~~~~~~-~~~~v~~--~-G~lywl~~~~~~~~~~i~~fD~~~e~~-~~i~~P~~~~~~ 257 (379)
+.+|+.....-+.+...... ..+..+ ...++.+ + |.+|+..... ..|..||..+.++ ..+..+... ..
T Consensus 168 I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~----~~I~~~~~~~G~~~~~~~~~~~~-~~ 242 (329)
T 3fvz_A 168 IVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN----GRIQCFKTDTKEFVREIKHASFG-RN 242 (329)
T ss_dssp EEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT----TEEEEEETTTCCEEEEECCTTTT-TC
T ss_pred EEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC----CEEEEEECCCCcEEEEEeccccC-CC
Confidence 34777443322222200000 001111 2334555 4 8888876543 5899999985555 445444322 11
Q ss_pred CcEEEEECCeEEEEEEcC-----CCCEEEEEEEcCCeEEEEEEECCCC-Ccccc--eEEeeCCeEEEEEe-CCEEEEEeC
Q 039590 258 PTIIGVYNHSLCVLLSHN-----IENYYDIWVMKDKCWIKQLSVGPFV-GVQRP--LGFWKKGAFFVVST-SGHLLLYDP 328 (379)
Q Consensus 258 ~~~l~~~~G~L~l~~~~~-----~~~~i~iW~l~~~~W~~~~~i~~~~-~~~~~--~~~~~~~~il~~~~-~~~l~~yd~ 328 (379)
...+....|.++...... ....+.+|-+..... +..+.... .+..| +.+..+|.+|+... ++.+..|++
T Consensus 243 ~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~--~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 243 VFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEI--IDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp EEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCE--EEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred cceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeE--EEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence 113333334444333221 234666776655332 23343221 23334 44445555555443 445666655
Q ss_pred C
Q 039590 329 N 329 (379)
Q Consensus 329 ~ 329 (379)
+
T Consensus 321 ~ 321 (329)
T 3fvz_A 321 T 321 (329)
T ss_dssp E
T ss_pred C
Confidence 4
No 226
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=21.72 E-value=5.5e+02 Score=24.74 Aligned_cols=186 Identities=9% Similarity=0.028 Sum_probs=94.5
Q ss_pred eecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEE
Q 039590 106 PFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHV 185 (379)
Q Consensus 106 s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~ 185 (379)
..+|.|...+....++..+++-......+-..... ...|+++|...+.-.+ . . .. ....+
T Consensus 46 ~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~---------~P~GlAvD~~~~~LY~--t-D-~~------~~~I~- 105 (628)
T 4a0p_A 46 VTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLD---------YPEGMAVDWLGKNLYW--A-D-TG------TNRIE- 105 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS---------CCCEEEEETTTTEEEE--E-E-TT------TTEEE-
T ss_pred CCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCC---------CcceEEEEeCCCEEEE--E-E-CC------CCEEE-
Confidence 34677776655555677777765543332221111 1257777866553222 1 1 11 11334
Q ss_pred EEEEcCCCcccccccccCCcceeeeccccEEE---CceEeeEeecCCCCccEEEEEECCCceEEEecCCCCCCCCCcEEE
Q 039590 186 AMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYV---DGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIG 262 (379)
Q Consensus 186 ~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~l~ 262 (379)
++++.+..=+.+.. ... . ...++.+ +|.|||..... ...|..+++....-..+- . .. ..+..|+
T Consensus 106 -v~~~dG~~~~~l~~--~~l-~---~P~~iavdp~~G~lY~tD~g~---~~~I~r~~~dG~~~~~l~-~-~~-~~P~Gla 172 (628)
T 4a0p_A 106 -VSKLDGQHRQVLVW--KDL-D---SPRALALDPAEGFMYWTEWGG---KPKIDRAAMDGSERTTLV-P-NV-GRANGLT 172 (628)
T ss_dssp -EEETTSTTCEEEEC--SSC-C---CEEEEEEETTTTEEEEEECSS---SCEEEEEETTSCSCEEEE-C-SC-SSEEEEE
T ss_pred -EEecCCCcEEEEEe--CCC-C---CcccEEEccCCCeEEEeCCCC---CCEEEEEeCCCCceEEEE-C-CC-CCcceEE
Confidence 77776543222220 011 0 1234444 69999987532 358999998766544432 1 11 1222455
Q ss_pred EE--CCeEEEEEEcCCCCEEEEEEEcC-CeEEEEEEECCCCCcccceEEeeC-CeEEEEEe-CCEEEEEeCCCCc
Q 039590 263 VY--NHSLCVLLSHNIENYYDIWVMKD-KCWIKQLSVGPFVGVQRPLGFWKK-GAFFVVST-SGHLLLYDPNTQE 332 (379)
Q Consensus 263 ~~--~G~L~l~~~~~~~~~i~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~-~~il~~~~-~~~l~~yd~~t~~ 332 (379)
.. +++|+++... ...+...-++. .. ++. . ..+..|.++.-+ +.+|.... .+.+...|..+++
T Consensus 173 lD~~~~~LY~aD~~--~~~I~~~d~dG~~~--~v~-~---~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 173 IDYAKRRLYWTDLD--TNLIESSNMLGLNR--EVI-A---DDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EETTTTEEEEEETT--TTEEEEEETTSCSC--EEE-E---ECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred EccccCEEEEEECC--CCEEEEEcCCCCce--EEe-e---ccCCCceEEEEECCEEEEecCCCCEEEEEECCCCC
Confidence 43 6889888765 44444443333 22 221 1 123466665433 45555543 6789999987665
No 227
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=21.53 E-value=3.4e+02 Score=22.31 Aligned_cols=59 Identities=17% Similarity=0.280 Sum_probs=36.4
Q ss_pred CCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCeEEEEE-eCCEEEEEeCCCCcEEE
Q 039590 277 ENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVS-TSGHLLLYDPNTQEMRD 335 (379)
Q Consensus 277 ~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~-~~~~l~~yd~~t~~~~~ 335 (379)
+..+.||-++...-.+............-+.+..+++.++.. .++.+.+||.++++...
T Consensus 44 D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~ 103 (318)
T 4ggc_A 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103 (318)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE
Confidence 568999987764434444433222222334555667766554 47899999999987543
No 228
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=20.80 E-value=4.8e+02 Score=23.75 Aligned_cols=70 Identities=10% Similarity=0.067 Sum_probs=44.6
Q ss_pred CCeEEEEEEcC-----CCCEEEEEEEcCCeEEEEEEECCCCCcccceEEeeCCe-EEEEEe--CCEEEEEeCCCCcEEE
Q 039590 265 NHSLCVLLSHN-----IENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGA-FFVVST--SGHLLLYDPNTQEMRD 335 (379)
Q Consensus 265 ~G~L~l~~~~~-----~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~--~~~l~~yd~~t~~~~~ 335 (379)
+++|++..... ....=+||+++-.++..+.+|+... ...-+.+..+|+ .++... ++.+.++|.++.+..+
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~ 407 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELR 407 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred CCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEE
Confidence 35677776431 1134578888876677777775221 123345566777 655544 7899999999988653
No 229
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.63 E-value=4.3e+02 Score=23.08 Aligned_cols=99 Identities=10% Similarity=0.023 Sum_probs=55.1
Q ss_pred cEEEEEECCCceEE-EecCCCCCCCCCcEEE-EECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEee
Q 039590 233 AVILSFHLGNDVFE-EVQEPYIPQSEPTIIG-VYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWK 310 (379)
Q Consensus 233 ~~i~~fD~~~e~~~-~i~~P~~~~~~~~~l~-~~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~ 310 (379)
..|..+|+.+.+.. .+..+.. -..+. .-+|...++.....+..+.||-+..........+.....-..-+.+..
T Consensus 284 ~~i~i~d~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 359 (401)
T 4aez_A 284 KQIHFWNAATGARVNTVDAGSQ----VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP 359 (401)
T ss_dssp CEEEEEETTTCCEEEEEECSSC----EEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT
T ss_pred CEEEEEECCCCCEEEEEeCCCc----EEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC
Confidence 47888888765532 2332211 11333 235665555432247899999998766666655543332223345556
Q ss_pred CCeEEEEE-eCCEEEEEeCCCCcEEE
Q 039590 311 KGAFFVVS-TSGHLLLYDPNTQEMRD 335 (379)
Q Consensus 311 ~~~il~~~-~~~~l~~yd~~t~~~~~ 335 (379)
++..++.. .++.+.+||+.+++...
T Consensus 360 dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 360 DGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp TSSEEEEECTTSEEEEEECCC-----
T ss_pred CCCEEEEEeCCCcEEEEECCCCcccc
Confidence 67766654 47899999998876543
No 230
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=20.50 E-value=3.6e+02 Score=22.23 Aligned_cols=110 Identities=12% Similarity=0.109 Sum_probs=58.8
Q ss_pred CceEeeE-------eecCCCCccEEEEEECCCceEEEecCCCCC--CCCCcEEEE-EC-CeEEEEEEcCCCCEEEEEEEc
Q 039590 218 DGVCYWL-------SRFRNNDHAVILSFHLGNDVFEEVQEPYIP--QSEPTIIGV-YN-HSLCVLLSHNIENYYDIWVMK 286 (379)
Q Consensus 218 ~G~lywl-------~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~--~~~~~~l~~-~~-G~L~l~~~~~~~~~i~iW~l~ 286 (379)
+|.+|+. .... ..|..+|+.+.++..+..|... ......++. .+ |.|++.... ..+.+|-.+
T Consensus 28 ~g~l~~~~~~~~~~~~~~----~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~---~~l~~~d~~ 100 (314)
T 1pjx_A 28 NGDFYIVAPEVEVNGKPA----GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR---LGLLVVQTD 100 (314)
T ss_dssp TSCEEEEETTCEETTEEC----CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT---TEEEEEETT
T ss_pred CCCEEEEEeccccCCCCC----CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC---CCEEEEeCC
Confidence 6888887 2222 4799999988888776553211 111224443 35 788776643 344444443
Q ss_pred CCeEEEE-EEECCCCCc--ccceEEeeCCeEEEEEeC----------------CEEEEEeCCCCcEEEe
Q 039590 287 DKCWIKQ-LSVGPFVGV--QRPLGFWKKGAFFVVSTS----------------GHLLLYDPNTQEMRDL 336 (379)
Q Consensus 287 ~~~W~~~-~~i~~~~~~--~~~~~~~~~~~il~~~~~----------------~~l~~yd~~t~~~~~v 336 (379)
...... ......... ..-+.+..+|.+++.... ..++.||++ ++.+.+
T Consensus 101 -g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 101 -GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV 167 (314)
T ss_dssp -SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred -CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence 332211 111101111 223445556778776542 579999987 666543
No 231
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=20.20 E-value=3.9e+02 Score=22.44 Aligned_cols=194 Identities=7% Similarity=-0.035 Sum_probs=92.1
Q ss_pred cceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeeeEEEE
Q 039590 108 DGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAM 187 (379)
Q Consensus 108 ~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~v 187 (379)
+|-|.+.+....+++.+||.++....++... ...++.+++..+ ..| .- . ... ...+..
T Consensus 42 ~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~-----------~p~gia~~~dG~-l~v-ad--~-~~~------~~~v~~ 99 (306)
T 2p4o_A 42 DGTIFVTNHEVGEIVSITPDGNQQIHATVEG-----------KVSGLAFTSNGD-LVA-TG--W-NAD------SIPVVS 99 (306)
T ss_dssp TSCEEEEETTTTEEEEECTTCCEEEEEECSS-----------EEEEEEECTTSC-EEE-EE--E-CTT------SCEEEE
T ss_pred CCCEEEEeCCCCeEEEECCCCceEEEEeCCC-----------CceeEEEcCCCc-EEE-Ee--c-cCC------cceEEE
Confidence 6666666544457888999876443332211 135677776533 322 11 1 100 112336
Q ss_pred EEcCCCcccccccccCCcceeee-ccccEEECceEeeEeecCCCCccEEEEEECCCceEEEe---c-----CCCCCCCCC
Q 039590 188 YNLRTNSWRDLKSFKSDHYVMSF-WSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEV---Q-----EPYIPQSEP 258 (379)
Q Consensus 188 yss~~~~W~~~~~~~~~~~~~~~-~~~~v~~~G~lywl~~~~~~~~~~i~~fD~~~e~~~~i---~-----~P~~~~~~~ 258 (379)
|+..+++.+.+...+ ...+ ....+..+|.+|..... ...|..+|..+...+.. . .+.......
T Consensus 100 ~d~~~g~~~~~~~~~----~~~~~~g~~~~~~~~~~v~d~~----~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~p 171 (306)
T 2p4o_A 100 LVKSDGTVETLLTLP----DAIFLNGITPLSDTQYLTADSY----RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA 171 (306)
T ss_dssp EECTTSCEEEEEECT----TCSCEEEEEESSSSEEEEEETT----TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred EcCCCCeEEEEEeCC----CccccCcccccCCCcEEEEECC----CCeEEEEeCCCCcEeEEEECCccccccccCCCCcC
Confidence 666676665544111 1111 11112234556654432 24899999876432221 1 111110111
Q ss_pred cEEEEECCeEEEEEEcCCCCEEEEEEEcC-CeEEEEEEECCCCCcccceEEeeCCeEEEEEe-CCEEEEEeCCCCcEEE
Q 039590 259 TIIGVYNHSLCVLLSHNIENYYDIWVMKD-KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST-SGHLLLYDPNTQEMRD 335 (379)
Q Consensus 259 ~~l~~~~G~L~l~~~~~~~~~i~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~-~~~l~~yd~~t~~~~~ 335 (379)
-.|..-++.|++.... ...+..+-++. ........+... ....-+.+..+|.+++... .+.+..||++ ++...
T Consensus 172 ngis~dg~~lyv~d~~--~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~ 246 (306)
T 2p4o_A 172 NGLKRFGNFLYVSNTE--KMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTI 246 (306)
T ss_dssp EEEEEETTEEEEEETT--TTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEE
T ss_pred CCcCcCCCEEEEEeCC--CCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEE
Confidence 1353334467776654 55666665543 111111111000 1133466667788877654 6789999997 55443
No 232
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=20.08 E-value=3.9e+02 Score=22.43 Aligned_cols=95 Identities=7% Similarity=-0.024 Sum_probs=48.3
Q ss_pred cEEEEEECCC-ce-EEEecCCCCCCCCCcEEEE-ECCeEEEEEEcCCCCEEEEEEEcCCeEEEEEEECCCCCcccceEEe
Q 039590 233 AVILSFHLGN-DV-FEEVQEPYIPQSEPTIIGV-YNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFW 309 (379)
Q Consensus 233 ~~i~~fD~~~-e~-~~~i~~P~~~~~~~~~l~~-~~G~L~l~~~~~~~~~i~iW~l~~~~W~~~~~i~~~~~~~~~~~~~ 309 (379)
..|..+|+.+ .+ ...+...... -..+.. -+|.+.++... +..+.+|-+....-..... .. .-...+.+.
T Consensus 197 g~i~i~d~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~--~~-~~~~~~~~~ 268 (369)
T 3zwl_B 197 GKISKYDVSNNYEYVDSIDLHEKS---ISDMQFSPDLTYFITSSR--DTNSFLVDVSTLQVLKKYE--TD-CPLNTAVIT 268 (369)
T ss_dssp SEEEEEETTTTTEEEEEEECCSSC---EEEEEECTTSSEEEEEET--TSEEEEEETTTCCEEEEEE--CS-SCEEEEEEC
T ss_pred CEEEEEECCCCcEeEEEEecCCCc---eeEEEECCCCCEEEEecC--CceEEEEECCCCceeeeec--CC-CCceeEEec
Confidence 4789999987 22 3333332211 113332 25666666655 6789999887632222222 11 111223333
Q ss_pred eCCeEEEEEe-CC--------------EEEEEeCCCCcEEE
Q 039590 310 KKGAFFVVST-SG--------------HLLLYDPNTQEMRD 335 (379)
Q Consensus 310 ~~~~il~~~~-~~--------------~l~~yd~~t~~~~~ 335 (379)
.++..++... ++ .+..||.++++...
T Consensus 269 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 309 (369)
T 3zwl_B 269 PLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG 309 (369)
T ss_dssp SSSSEEEEEECCC-------------CEEEEEETTTCCEEE
T ss_pred CCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh
Confidence 4444444332 22 78899988876543
Done!