BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039591
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FPE|A Chain A, Crystal Structure Of Mtnas In Complex With
Thermonicotianamine
pdb|3FPE|B Chain B, Crystal Structure Of Mtnas In Complex With
Thermonicotianamine
pdb|3FPF|A Chain A, Crystal Structure Of Mtnas In Complex With Mta And Tna
pdb|3FPF|B Chain B, Crystal Structure Of Mtnas In Complex With Mta And Tna
Length = 298
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 97/200 (48%), Gaps = 19/200 (9%)
Query: 85 LELEFATFLNKIPQPLNNLNLFPYYGNYVKLASFECRILKENGVVQPKKVAFVGSGPMPL 144
LE+E A + + P L F +Y Y++L E + + + ++ F+G GP+PL
Sbjct: 80 LEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGR---FRRGERAVFIGGGPLPL 136
Query: 145 TSIVMAKNHLKATHFDNFDIDEAANNVARRIV---ATDFEFEKRMKFLTGDILQVKEKLG 201
T I+++ H+ + +I+ ++R+++ D + +TGD V + L
Sbjct: 137 TGILLS--HVYGMRVNVVEIEPDIAELSRKVIEGLGVD-----GVNVITGD-ETVIDGL- 187
Query: 202 EYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSAKGARAFLYPVVERHDLLDFE 261
E+D + +AAL E K ++ R+I +Y+ ++ R+ G RA LY V D+ F
Sbjct: 188 EFDVLMVAALA----EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFR 243
Query: 262 VLSIFHPIDEVINSVILVRK 281
+ P +V N+ +LV K
Sbjct: 244 RAGVVLPSGKVNNTSVLVFK 263
>pdb|3O31|A Chain A, E81q Mutant Of Mtnas In Complex With A Reaction
Intermediate
pdb|3O31|B Chain B, E81q Mutant Of Mtnas In Complex With A Reaction
Intermediate
Length = 296
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 97/200 (48%), Gaps = 19/200 (9%)
Query: 85 LELEFATFLNKIPQPLNNLNLFPYYGNYVKLASFECRILKENGVVQPKKVAFVGSGPMPL 144
L++E A + + P L F +Y Y++L E + + + ++ F+G GP+PL
Sbjct: 79 LQMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGR---FRRGERAVFIGGGPLPL 135
Query: 145 TSIVMAKNHLKATHFDNFDIDEAANNVARRIV---ATDFEFEKRMKFLTGDILQVKEKLG 201
T I+++ H+ + +I+ ++R+++ D + +TGD V + L
Sbjct: 136 TGILLS--HVYGMRVNVVEIEPDIAELSRKVIEGLGVD-----GVNVITGD-ETVIDGL- 186
Query: 202 EYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSAKGARAFLYPVVERHDLLDFE 261
E+D + +AAL E K ++ R+I +Y+ ++ R+ G RA LY V D+ F
Sbjct: 187 EFDVLMVAALA----EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFR 242
Query: 262 VLSIFHPIDEVINSVILVRK 281
+ P +V N+ +LV K
Sbjct: 243 RAGVVLPSGKVNNTSVLVFK 262
>pdb|3FPG|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas
pdb|3FPG|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas
pdb|3FPH|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
L-Glutamate
pdb|3FPH|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
L-Glutamate
pdb|3FPJ|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
S- Adenosylmethionine
pdb|3FPJ|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
S- Adenosylmethionine
Length = 298
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 97/200 (48%), Gaps = 19/200 (9%)
Query: 85 LELEFATFLNKIPQPLNNLNLFPYYGNYVKLASFECRILKENGVVQPKKVAFVGSGPMPL 144
L++E A + + P L F +Y Y++L E + + + ++ F+G GP+PL
Sbjct: 80 LQMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGR---FRRGERAVFIGGGPLPL 136
Query: 145 TSIVMAKNHLKATHFDNFDIDEAANNVARRIV---ATDFEFEKRMKFLTGDILQVKEKLG 201
T I+++ H+ + +I+ ++R+++ D + +TGD V + L
Sbjct: 137 TGILLS--HVYGMRVNVVEIEPDIAELSRKVIEGLGVD-----GVNVITGD-ETVIDGL- 187
Query: 202 EYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSAKGARAFLYPVVERHDLLDFE 261
E+D + +AAL E K ++ R+I +Y+ ++ R+ G RA LY V D+ F
Sbjct: 188 EFDVLMVAALA----EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFR 243
Query: 262 VLSIFHPIDEVINSVILVRK 281
+ P +V N+ +LV K
Sbjct: 244 RAGVVLPSGKVNNTSVLVFK 263
>pdb|3LA8|A Chain A, The Crystal Structure Of Smu.1229 From Streptococcus
Mutans Ua159
pdb|3LBA|A Chain A, The Crystal Structure Of Smu.1229 From Streptococcus
Mutans Ua159 Bound To Hypoxanthine
Length = 303
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 22/92 (23%)
Query: 106 FPYY-GNYVKLASFECRILKE---NGVVQPKKVAFVGSGPMPLTSI-----VMAKNHLKA 156
F YY GN ++L +F RI+K G++ +G GP L +I + N L
Sbjct: 116 FHYYEGNSMELVTFPIRIMKALGCQGLIVTNAAGGIGFGPGTLMAISDHINLTGANPLMG 175
Query: 157 THFDNF-------------DIDEAANNVARRI 175
+ D+F D E A+ VA +I
Sbjct: 176 ENLDDFGFRFPDMSNAYTADYREVAHQVADKI 207
>pdb|1YLF|A Chain A, X-ray Crystal Structure Of Bc1842 Protein From Bacillus
Cereus, A Member Of The Rrf2 Family Of Putative
Transcription Regulators.
pdb|1YLF|B Chain B, X-ray Crystal Structure Of Bc1842 Protein From Bacillus
Cereus, A Member Of The Rrf2 Family Of Putative
Transcription Regulators.
pdb|1YLF|C Chain C, X-ray Crystal Structure Of Bc1842 Protein From Bacillus
Cereus, A Member Of The Rrf2 Family Of Putative
Transcription Regulators
Length = 149
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 222 IIRHIRKYMKDGGILLVRSAKGARAFLYPVVERHDLLDFEVLSIFHPIDEV 272
+IR I Y+K G + V G L DL + +L ++H ++ V
Sbjct: 46 VIRKIXSYLKQAGFVYVNRGPGGAGLL------KDLHEITLLDVYHAVNVV 90
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 13/147 (8%)
Query: 111 NYVKLASFECRILKENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANN 170
+ V+ ++ IL+ ++ K V VG+G L+ + + I + A
Sbjct: 64 DRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQARE 123
Query: 171 VARRIVATDFE-FEKRMKFLTGDILQVKEKLGEYDCIFLAAL-VGMSKEEKMKIIRHIR- 227
V R F E R+ L G + V E + D I + G+ E + + H R
Sbjct: 124 VVR------FNGLEDRVHVLPGPVETV-ELPEQVDAIVSEWMGYGLLHESMLSSVLHART 176
Query: 228 KYMKDGGILLVRSAKGARAFLYPVVER 254
K++K+GG+LL SA+ F+ P+ ++
Sbjct: 177 KWLKEGGLLLPASAE---LFIVPISDQ 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,573,215
Number of Sequences: 62578
Number of extensions: 293508
Number of successful extensions: 848
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 839
Number of HSP's gapped (non-prelim): 8
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)