Query 039591
Match_columns 284
No_of_seqs 285 out of 2132
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 11:07:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03075 nicotianamine synthas 100.0 2.4E-67 5.2E-72 471.5 28.3 275 9-283 2-276 (296)
2 PF03059 NAS: Nicotianamine sy 100.0 5E-67 1.1E-71 465.2 19.7 272 12-283 2-273 (276)
3 PF12847 Methyltransf_18: Meth 99.7 1.4E-17 3E-22 129.2 11.4 108 130-240 1-111 (112)
4 COG4122 Predicted O-methyltran 99.7 1.4E-15 3.1E-20 131.5 12.7 106 129-241 58-167 (219)
5 PF01596 Methyltransf_3: O-met 99.6 7.3E-16 1.6E-20 132.9 10.5 107 129-241 44-156 (205)
6 PLN02244 tocopherol O-methyltr 99.6 7.6E-15 1.7E-19 136.2 16.2 159 66-240 53-223 (340)
7 COG2226 UbiE Methylase involve 99.6 3E-15 6.5E-20 131.3 12.5 109 127-240 48-156 (238)
8 PLN02781 Probable caffeoyl-CoA 99.6 4.4E-15 9.6E-20 130.8 12.4 106 129-240 67-178 (234)
9 PLN02476 O-methyltransferase 99.6 5.2E-15 1.1E-19 132.7 12.3 107 129-241 117-229 (278)
10 PF13847 Methyltransf_31: Meth 99.6 9.4E-15 2E-19 120.0 12.3 110 129-242 2-112 (152)
11 PF01209 Ubie_methyltran: ubiE 99.6 4E-15 8.7E-20 130.9 10.5 110 127-240 44-153 (233)
12 PRK00107 gidB 16S rRNA methylt 99.6 3.3E-14 7.2E-19 121.1 14.7 103 129-241 44-146 (187)
13 PLN02589 caffeoyl-CoA O-methyl 99.6 1.4E-14 3E-19 128.2 12.4 107 129-241 78-191 (247)
14 PF08241 Methyltransf_11: Meth 99.6 1.2E-14 2.6E-19 108.5 9.5 95 135-238 1-95 (95)
15 TIGR00138 gidB 16S rRNA methyl 99.6 2.7E-14 5.9E-19 121.0 12.7 127 130-266 42-168 (181)
16 TIGR02752 MenG_heptapren 2-hep 99.6 9.1E-14 2E-18 121.7 15.5 110 127-240 42-151 (231)
17 PRK15451 tRNA cmo(5)U34 methyl 99.6 6E-14 1.3E-18 124.5 14.4 127 106-240 36-164 (247)
18 COG2242 CobL Precorrin-6B meth 99.5 1.1E-13 2.3E-18 116.1 13.6 117 115-240 17-135 (187)
19 PRK13944 protein-L-isoaspartat 99.5 1.2E-13 2.6E-18 119.3 14.0 105 128-241 70-174 (205)
20 COG2227 UbiG 2-polyprenyl-3-me 99.5 2.3E-14 4.9E-19 124.3 9.1 104 129-240 58-161 (243)
21 PRK11036 putative S-adenosyl-L 99.5 9.5E-14 2.1E-18 123.7 13.2 106 129-240 43-149 (255)
22 TIGR02469 CbiT precorrin-6Y C5 99.5 2.5E-13 5.3E-18 106.7 13.5 105 128-240 17-122 (124)
23 COG2264 PrmA Ribosomal protein 99.5 3.6E-13 7.9E-18 121.3 16.2 139 129-282 161-300 (300)
24 PRK11207 tellurite resistance 99.5 1.4E-13 3.1E-18 118.1 13.0 104 129-239 29-133 (197)
25 PRK04457 spermidine synthase; 99.5 6.2E-14 1.3E-18 125.5 11.0 147 129-281 65-216 (262)
26 PRK13942 protein-L-isoaspartat 99.5 1.9E-13 4.1E-18 118.7 13.5 105 126-240 72-176 (212)
27 PLN02233 ubiquinone biosynthes 99.5 1.9E-13 4E-18 122.4 13.5 111 128-240 71-182 (261)
28 PTZ00098 phosphoethanolamine N 99.5 1.8E-13 3.9E-18 122.6 13.1 110 124-240 46-156 (263)
29 COG2519 GCD14 tRNA(1-methylade 99.5 3.8E-13 8.3E-18 117.5 14.6 150 125-283 89-253 (256)
30 TIGR00080 pimt protein-L-isoas 99.5 2.5E-13 5.4E-18 118.1 13.2 104 127-240 74-177 (215)
31 TIGR00740 methyltransferase, p 99.5 4.3E-13 9.3E-18 118.3 14.9 108 129-240 52-161 (239)
32 TIGR03840 TMPT_Se_Te thiopurin 99.5 4.1E-13 8.8E-18 116.7 14.5 108 129-240 33-152 (213)
33 COG2518 Pcm Protein-L-isoaspar 99.5 1.3E-13 2.9E-18 117.8 10.9 119 112-243 54-172 (209)
34 PLN02396 hexaprenyldihydroxybe 99.5 1.3E-13 2.9E-18 126.6 11.5 106 129-240 130-235 (322)
35 PF05175 MTS: Methyltransferas 99.5 2.5E-13 5.5E-18 113.9 12.1 106 130-240 31-140 (170)
36 PRK11873 arsM arsenite S-adeno 99.5 2.7E-13 5.9E-18 121.8 12.9 108 129-240 76-183 (272)
37 PF13659 Methyltransf_26: Meth 99.5 1.8E-13 3.9E-18 106.9 10.2 106 131-240 1-115 (117)
38 PRK00377 cbiT cobalt-precorrin 99.5 6.9E-13 1.5E-17 113.9 14.2 110 125-240 35-145 (198)
39 PRK07402 precorrin-6B methylas 99.5 5.4E-13 1.2E-17 114.3 13.4 104 128-240 38-142 (196)
40 PRK12335 tellurite resistance 99.5 1.3E-12 2.9E-17 118.4 16.2 104 129-240 119-223 (287)
41 PF02353 CMAS: Mycolic acid cy 99.5 3.5E-13 7.6E-18 121.2 11.9 110 124-240 56-166 (273)
42 TIGR00477 tehB tellurite resis 99.5 7.7E-13 1.7E-17 113.4 13.4 103 129-239 29-132 (195)
43 PRK00216 ubiE ubiquinone/menaq 99.5 8.8E-13 1.9E-17 115.3 14.0 109 128-240 49-158 (239)
44 PF13649 Methyltransf_25: Meth 99.5 2.4E-13 5.3E-18 103.9 9.2 97 134-234 1-101 (101)
45 PRK08287 cobalt-precorrin-6Y C 99.5 8.7E-13 1.9E-17 112.1 13.2 103 128-240 29-131 (187)
46 TIGR03533 L3_gln_methyl protei 99.5 4.9E-12 1.1E-16 114.6 18.6 110 129-242 120-253 (284)
47 PF01135 PCMT: Protein-L-isoas 99.5 4E-13 8.6E-18 116.3 10.8 111 121-241 63-173 (209)
48 PRK14103 trans-aconitate 2-met 99.5 4.9E-13 1.1E-17 119.1 11.4 104 123-239 22-125 (255)
49 PRK00517 prmA ribosomal protei 99.5 3E-12 6.6E-17 113.9 16.2 131 129-282 118-250 (250)
50 COG4123 Predicted O-methyltran 99.4 1E-12 2.2E-17 115.5 12.5 109 129-240 43-170 (248)
51 PRK13255 thiopurine S-methyltr 99.4 2.4E-12 5.3E-17 112.2 14.0 106 129-238 36-153 (218)
52 PRK14966 unknown domain/N5-glu 99.4 4.6E-12 1E-16 119.1 16.8 108 129-241 250-382 (423)
53 PRK01544 bifunctional N5-gluta 99.4 1.4E-11 3E-16 119.9 20.0 135 130-268 138-306 (506)
54 PRK01683 trans-aconitate 2-met 99.4 1.4E-12 3.1E-17 116.1 12.1 103 127-240 28-130 (258)
55 smart00828 PKS_MT Methyltransf 99.4 9.6E-13 2.1E-17 114.7 10.7 104 132-240 1-104 (224)
56 PRK04266 fibrillarin; Provisio 99.4 3.2E-12 6.8E-17 112.0 13.7 146 126-281 68-225 (226)
57 KOG1270 Methyltransferases [Co 99.4 2.5E-13 5.3E-18 118.8 6.1 102 131-240 90-195 (282)
58 PRK11805 N5-glutamine S-adenos 99.4 1.6E-11 3.5E-16 112.4 18.4 109 131-243 134-266 (307)
59 PLN02336 phosphoethanolamine N 99.4 2E-12 4.4E-17 125.0 12.9 106 128-240 264-369 (475)
60 COG2230 Cfa Cyclopropane fatty 99.4 2.3E-12 5E-17 115.2 12.2 110 124-240 66-176 (283)
61 PRK00121 trmB tRNA (guanine-N( 99.4 3.7E-12 8E-17 109.8 12.5 108 129-240 39-156 (202)
62 TIGR00091 tRNA (guanine-N(7)-) 99.4 2.5E-12 5.4E-17 110.1 11.4 108 129-240 15-132 (194)
63 PRK10258 biotin biosynthesis p 99.4 2.9E-12 6.4E-17 113.7 12.0 100 129-240 41-140 (251)
64 PRK06922 hypothetical protein; 99.4 7.5E-12 1.6E-16 122.8 15.4 107 129-240 417-537 (677)
65 PF06325 PrmA: Ribosomal prote 99.4 5E-12 1.1E-16 114.6 13.0 142 121-281 153-294 (295)
66 PF05401 NodS: Nodulation prot 99.4 8.7E-12 1.9E-16 105.5 13.2 105 129-242 42-148 (201)
67 TIGR02716 C20_methyl_CrtF C-20 99.4 6.6E-12 1.4E-16 114.8 13.4 106 129-240 148-254 (306)
68 PRK08317 hypothetical protein; 99.4 9E-12 2E-16 108.6 13.1 109 127-240 16-124 (241)
69 COG2890 HemK Methylase of poly 99.4 7.4E-11 1.6E-15 106.6 19.3 105 133-243 113-241 (280)
70 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 9.4E-12 2E-16 107.6 12.9 105 129-240 38-143 (223)
71 TIGR03438 probable methyltrans 99.4 3.2E-11 6.9E-16 110.2 16.9 109 129-240 62-177 (301)
72 PLN02490 MPBQ/MSBQ methyltrans 99.4 4.9E-12 1.1E-16 116.8 11.6 104 129-240 112-215 (340)
73 PF03848 TehB: Tellurite resis 99.4 9.8E-12 2.1E-16 105.8 12.5 104 129-240 29-133 (192)
74 PRK00811 spermidine synthase; 99.4 1E-11 2.2E-16 112.5 13.5 110 129-240 75-191 (283)
75 PRK13256 thiopurine S-methyltr 99.4 1.5E-11 3.3E-16 107.3 14.1 137 88-240 11-163 (226)
76 PRK15001 SAM-dependent 23S rib 99.4 1E-11 2.3E-16 116.2 13.8 107 130-240 228-340 (378)
77 PRK00312 pcm protein-L-isoaspa 99.4 1.1E-11 2.5E-16 107.3 13.2 101 128-241 76-176 (212)
78 KOG1540 Ubiquinone biosynthesi 99.4 7.9E-12 1.7E-16 108.9 11.7 111 126-240 96-214 (296)
79 COG4106 Tam Trans-aconitate me 99.4 2.4E-12 5.2E-17 109.6 8.3 109 121-240 21-129 (257)
80 PRK13943 protein-L-isoaspartat 99.4 1.7E-11 3.8E-16 112.6 14.6 104 127-240 77-180 (322)
81 PF05724 TPMT: Thiopurine S-me 99.3 8.8E-12 1.9E-16 108.6 11.8 139 88-240 5-155 (218)
82 PRK14967 putative methyltransf 99.3 2E-11 4.4E-16 106.6 13.9 107 127-240 33-159 (223)
83 TIGR00537 hemK_rel_arch HemK-r 99.3 1.5E-11 3.2E-16 103.8 12.6 103 129-240 18-140 (179)
84 PRK15068 tRNA mo(5)U34 methylt 99.3 1.9E-11 4.2E-16 112.6 14.2 106 129-240 121-226 (322)
85 TIGR00406 prmA ribosomal prote 99.3 1.7E-11 3.7E-16 111.3 13.0 102 129-240 158-259 (288)
86 PRK11088 rrmA 23S rRNA methylt 99.3 2.2E-11 4.7E-16 109.6 13.3 126 123-265 78-216 (272)
87 PF08242 Methyltransf_12: Meth 99.3 3.6E-13 7.8E-18 102.4 1.5 97 135-236 1-99 (99)
88 TIGR00536 hemK_fam HemK family 99.3 3.5E-11 7.7E-16 109.0 14.6 108 132-243 116-247 (284)
89 TIGR03704 PrmC_rel_meth putati 99.3 2.8E-11 6.1E-16 107.7 13.5 136 131-279 87-250 (251)
90 KOG1271 Methyltransferases [Ge 99.3 5.3E-11 1.2E-15 98.9 13.6 147 129-281 66-227 (227)
91 TIGR02072 BioC biotin biosynth 99.3 3.3E-11 7.2E-16 105.2 13.1 103 129-240 33-135 (240)
92 PLN02366 spermidine synthase 99.3 3.2E-11 7E-16 110.2 13.5 110 129-240 90-206 (308)
93 PRK09489 rsmC 16S ribosomal RN 99.3 3.5E-11 7.5E-16 111.7 13.9 105 129-240 195-303 (342)
94 KOG1663 O-methyltransferase [S 99.3 1.3E-11 2.9E-16 106.2 10.2 106 129-240 72-183 (237)
95 PRK01581 speE spermidine synth 99.3 3.1E-11 6.7E-16 111.6 13.2 110 129-240 149-268 (374)
96 TIGR00446 nop2p NOL1/NOP2/sun 99.3 4.6E-11 9.9E-16 107.2 14.1 110 128-240 69-199 (264)
97 TIGR00452 methyltransferase, p 99.3 4.2E-11 9.1E-16 109.7 13.2 108 127-240 118-225 (314)
98 PRK14121 tRNA (guanine-N(7)-)- 99.3 6.5E-11 1.4E-15 110.7 13.8 109 128-240 120-235 (390)
99 COG2813 RsmC 16S RNA G1207 met 99.3 6.1E-11 1.3E-15 106.5 12.7 106 129-240 157-266 (300)
100 PRK11705 cyclopropane fatty ac 99.3 6.9E-11 1.5E-15 111.3 13.6 104 126-240 163-267 (383)
101 TIGR03587 Pse_Me-ase pseudamin 99.3 1E-10 2.2E-15 101.0 13.3 100 129-240 42-142 (204)
102 TIGR03534 RF_mod_PrmC protein- 99.3 1.4E-10 3E-15 102.4 14.5 108 129-241 86-218 (251)
103 smart00138 MeTrc Methyltransfe 99.3 5.5E-11 1.2E-15 106.7 11.7 114 129-244 98-246 (264)
104 PF08704 GCD14: tRNA methyltra 99.3 5.6E-11 1.2E-15 105.1 11.5 107 126-240 36-146 (247)
105 PRK14903 16S rRNA methyltransf 99.2 1E-10 2.2E-15 111.8 13.8 110 128-240 235-366 (431)
106 TIGR02021 BchM-ChlM magnesium 99.2 1.1E-10 2.3E-15 101.7 12.6 103 129-239 54-157 (219)
107 TIGR01177 conserved hypothetic 99.2 1.4E-10 3.1E-15 107.1 14.1 107 128-240 180-294 (329)
108 PF13489 Methyltransf_23: Meth 99.2 1E-10 2.2E-15 95.8 11.0 97 128-241 20-116 (161)
109 PRK14968 putative methyltransf 99.2 2E-10 4.4E-15 96.8 12.9 106 129-240 22-148 (188)
110 PRK10901 16S rRNA methyltransf 99.2 2.4E-10 5.1E-15 109.3 14.5 108 128-240 242-372 (427)
111 PRK15128 23S rRNA m(5)C1962 me 99.2 1.9E-10 4.1E-15 108.7 13.5 109 129-241 219-340 (396)
112 TIGR00417 speE spermidine synt 99.2 2E-10 4.3E-15 103.4 12.7 110 129-240 71-186 (270)
113 PRK09328 N5-glutamine S-adenos 99.2 2.1E-10 4.6E-15 102.9 12.8 108 129-241 107-239 (275)
114 PRK14902 16S rRNA methyltransf 99.2 2.3E-10 5E-15 109.9 13.7 110 128-240 248-379 (444)
115 PRK05134 bifunctional 3-demeth 99.2 4.1E-10 9E-15 98.7 13.7 104 129-240 47-151 (233)
116 cd02440 AdoMet_MTases S-adenos 99.2 4.6E-10 1E-14 83.4 12.0 102 133-239 1-103 (107)
117 TIGR00563 rsmB ribosomal RNA s 99.2 3.4E-10 7.3E-15 108.2 13.4 111 127-240 235-368 (426)
118 PRK11783 rlmL 23S rRNA m(2)G24 99.2 3.2E-10 7E-15 114.5 14.0 108 129-240 537-656 (702)
119 PRK14904 16S rRNA methyltransf 99.2 3.6E-10 7.7E-15 108.6 13.5 108 129-240 249-377 (445)
120 PTZ00146 fibrillarin; Provisio 99.2 6.1E-10 1.3E-14 100.4 14.2 146 127-281 129-286 (293)
121 PRK07580 Mg-protoporphyrin IX 99.2 9.7E-10 2.1E-14 95.9 14.8 103 128-238 61-164 (230)
122 COG2521 Predicted archaeal met 99.2 1.5E-10 3.3E-15 99.8 9.0 142 129-282 133-287 (287)
123 PRK14901 16S rRNA methyltransf 99.2 2.9E-10 6.3E-15 108.9 11.9 110 128-240 250-384 (434)
124 PF01564 Spermine_synth: Sperm 99.1 2.9E-10 6.2E-15 101.0 10.7 110 129-240 75-191 (246)
125 smart00650 rADc Ribosomal RNA 99.1 2.8E-09 6E-14 89.1 15.8 102 128-241 11-114 (169)
126 PLN02336 phosphoethanolamine N 99.1 4.7E-10 1E-14 108.6 12.7 104 129-240 36-142 (475)
127 PRK10909 rsmD 16S rRNA m(2)G96 99.1 8.1E-10 1.8E-14 95.0 12.8 106 129-241 52-160 (199)
128 PRK03612 spermidine synthase; 99.1 5E-10 1.1E-14 109.6 12.3 109 129-240 296-415 (521)
129 COG0421 SpeE Spermidine syntha 99.1 9.1E-10 2E-14 99.3 13.1 110 129-240 75-190 (282)
130 PLN02823 spermine synthase 99.1 7E-10 1.5E-14 102.5 12.4 110 129-240 102-220 (336)
131 PRK05785 hypothetical protein; 99.1 3.7E-10 8E-15 99.0 9.9 91 130-234 51-141 (226)
132 PRK03522 rumB 23S rRNA methylu 99.1 4E-09 8.7E-14 96.9 16.7 101 129-240 172-274 (315)
133 PLN02672 methionine S-methyltr 99.1 8.7E-10 1.9E-14 114.4 13.5 111 131-243 119-281 (1082)
134 TIGR01983 UbiG ubiquinone bios 99.1 9.5E-10 2.1E-14 95.6 11.5 105 129-240 44-149 (224)
135 PLN02585 magnesium protoporphy 99.1 3.2E-09 6.9E-14 97.4 14.9 103 129-239 143-249 (315)
136 PF08003 Methyltransf_9: Prote 99.1 3.5E-09 7.7E-14 95.2 13.9 114 121-240 105-219 (315)
137 PRK06202 hypothetical protein; 99.1 1.8E-09 4E-14 94.7 11.9 102 129-237 59-164 (232)
138 PRK13168 rumA 23S rRNA m(5)U19 99.0 9.2E-09 2E-13 98.8 16.8 137 129-281 296-442 (443)
139 COG2263 Predicted RNA methylas 99.0 4.9E-09 1.1E-13 88.0 12.2 80 126-214 41-120 (198)
140 PRK11188 rrmJ 23S rRNA methylt 99.0 1.5E-09 3.3E-14 94.0 9.2 127 129-275 50-197 (209)
141 TIGR00095 RNA methyltransferas 99.0 7.1E-09 1.5E-13 88.5 13.2 108 129-242 48-161 (189)
142 TIGR02085 meth_trns_rumB 23S r 99.0 4.7E-09 1E-13 98.7 13.1 101 129-240 232-334 (374)
143 PRK11933 yebU rRNA (cytosine-C 99.0 4.5E-09 9.8E-14 101.1 12.5 110 128-240 111-242 (470)
144 KOG2904 Predicted methyltransf 99.0 1.3E-08 2.8E-13 89.8 13.1 109 129-240 147-285 (328)
145 PF00891 Methyltransf_2: O-met 99.0 9.1E-09 2E-13 90.8 12.2 98 129-240 99-199 (241)
146 TIGR00438 rrmJ cell division p 98.9 4.5E-09 9.7E-14 89.4 9.6 98 129-240 31-146 (188)
147 TIGR00479 rumA 23S rRNA (uraci 98.9 1.7E-08 3.7E-13 96.6 14.5 100 129-239 291-395 (431)
148 PRK00536 speE spermidine synth 98.9 1E-08 2.3E-13 91.4 12.0 99 129-240 71-171 (262)
149 PHA03411 putative methyltransf 98.9 9.3E-09 2E-13 91.9 11.5 101 129-239 63-182 (279)
150 PHA03412 putative methyltransf 98.9 1.1E-08 2.4E-13 89.5 11.2 99 130-237 49-160 (241)
151 COG1092 Predicted SAM-dependen 98.9 1.3E-08 2.9E-13 95.4 12.0 110 130-243 217-339 (393)
152 PF02390 Methyltransf_4: Putat 98.9 6.7E-09 1.5E-13 89.1 9.1 105 133-241 20-134 (195)
153 PF09445 Methyltransf_15: RNA 98.9 6.7E-09 1.5E-13 86.2 8.6 77 132-213 1-80 (163)
154 PF02475 Met_10: Met-10+ like- 98.9 1.3E-08 2.9E-13 87.4 10.4 110 118-237 90-199 (200)
155 COG4976 Predicted methyltransf 98.9 2.2E-09 4.8E-14 92.4 5.1 142 129-282 124-286 (287)
156 PF03602 Cons_hypoth95: Conser 98.9 2.1E-08 4.5E-13 85.2 10.6 110 129-243 41-156 (183)
157 KOG4300 Predicted methyltransf 98.9 6.2E-09 1.4E-13 88.4 7.2 104 131-240 77-182 (252)
158 PRK11727 23S rRNA mA1618 methy 98.8 3.6E-08 7.7E-13 90.6 12.2 84 130-215 114-202 (321)
159 PRK04338 N(2),N(2)-dimethylgua 98.8 3.3E-08 7.3E-13 93.1 12.3 101 131-240 58-158 (382)
160 PRK05031 tRNA (uracil-5-)-meth 98.8 9.1E-08 2E-12 89.7 13.8 97 131-240 207-320 (362)
161 TIGR02143 trmA_only tRNA (urac 98.8 1.3E-07 2.9E-12 88.3 14.1 97 131-240 198-311 (353)
162 PF10672 Methyltrans_SAM: S-ad 98.8 7.3E-08 1.6E-12 87.1 11.6 107 129-240 122-238 (286)
163 PF02527 GidB: rRNA small subu 98.8 1.3E-07 2.7E-12 80.4 12.1 101 130-240 48-148 (184)
164 COG0144 Sun tRNA and rRNA cyto 98.8 2E-07 4.3E-12 87.1 14.3 111 128-240 154-288 (355)
165 TIGR02081 metW methionine bios 98.7 5.7E-08 1.2E-12 83.0 9.6 91 129-232 12-104 (194)
166 KOG2899 Predicted methyltransf 98.7 5.9E-08 1.3E-12 84.3 9.3 108 129-240 57-209 (288)
167 PF06080 DUF938: Protein of un 98.7 9.2E-08 2E-12 81.9 10.5 118 120-240 15-141 (204)
168 COG0742 N6-adenine-specific me 98.7 2.8E-07 6.1E-12 77.9 13.2 111 129-243 42-157 (187)
169 PRK14896 ksgA 16S ribosomal RN 98.7 1.9E-07 4.2E-12 83.4 12.7 79 127-215 26-104 (258)
170 COG0220 Predicted S-adenosylme 98.7 1.1E-07 2.4E-12 83.2 10.8 106 131-240 49-164 (227)
171 PF13578 Methyltransf_24: Meth 98.7 1.9E-08 4.2E-13 77.3 5.4 101 135-240 1-105 (106)
172 PF01170 UPF0020: Putative RNA 98.7 4.9E-07 1.1E-11 76.5 14.4 117 128-247 26-158 (179)
173 PLN02232 ubiquinone biosynthes 98.7 4.1E-08 8.8E-13 81.5 7.7 80 160-240 1-81 (160)
174 PTZ00338 dimethyladenosine tra 98.7 2E-07 4.3E-12 84.9 12.7 82 127-215 33-114 (294)
175 PF10294 Methyltransf_16: Puta 98.7 9.3E-08 2E-12 80.4 9.7 108 129-240 44-156 (173)
176 KOG1661 Protein-L-isoaspartate 98.7 2.5E-07 5.4E-12 78.9 11.9 105 128-240 80-193 (237)
177 PF07021 MetW: Methionine bios 98.7 9.6E-08 2.1E-12 80.8 8.9 95 129-239 12-108 (193)
178 PRK04148 hypothetical protein; 98.7 3.4E-07 7.3E-12 73.5 11.5 93 129-240 15-109 (134)
179 KOG2361 Predicted methyltransf 98.7 6E-08 1.3E-12 84.3 7.5 117 119-240 60-183 (264)
180 COG1063 Tdh Threonine dehydrog 98.6 1.5E-07 3.2E-12 87.9 9.6 103 129-244 167-273 (350)
181 TIGR00755 ksgA dimethyladenosi 98.6 5E-07 1.1E-11 80.5 12.4 89 126-228 25-116 (253)
182 PF05185 PRMT5: PRMT5 arginine 98.6 2.7E-07 5.9E-12 88.5 11.3 103 131-237 187-294 (448)
183 KOG3420 Predicted RNA methylas 98.6 5.5E-08 1.2E-12 78.3 5.4 82 126-213 44-125 (185)
184 PRK00274 ksgA 16S ribosomal RN 98.6 5.3E-07 1.2E-11 81.2 12.4 88 127-229 39-128 (272)
185 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.6 5.1E-07 1.1E-11 81.8 12.2 111 127-240 82-219 (283)
186 KOG1541 Predicted protein carb 98.6 4E-07 8.7E-12 78.2 10.6 100 130-240 50-160 (270)
187 KOG0024 Sorbitol dehydrogenase 98.6 2.4E-07 5.1E-12 83.8 9.5 133 107-254 141-286 (354)
188 KOG1500 Protein arginine N-met 98.6 4.8E-07 1E-11 82.1 11.4 106 126-237 173-279 (517)
189 TIGR00308 TRM1 tRNA(guanine-26 98.6 6.1E-07 1.3E-11 84.3 12.6 100 132-240 46-147 (374)
190 COG2520 Predicted methyltransf 98.6 8.1E-07 1.8E-11 81.9 12.1 112 119-240 178-289 (341)
191 COG2265 TrmA SAM-dependent met 98.5 2E-06 4.3E-11 82.2 14.1 100 129-239 292-395 (432)
192 KOG1499 Protein arginine N-met 98.5 3.8E-07 8.1E-12 83.4 8.6 103 129-237 59-164 (346)
193 KOG2730 Methylase [General fun 98.5 1.7E-07 3.6E-12 80.4 5.4 105 130-240 94-202 (263)
194 PF03291 Pox_MCEL: mRNA cappin 98.5 5.7E-07 1.2E-11 83.1 9.3 109 130-241 62-187 (331)
195 KOG3010 Methyltransferase [Gen 98.5 2.1E-07 4.5E-12 81.0 5.0 100 132-238 35-135 (261)
196 COG0357 GidB Predicted S-adeno 98.5 7.6E-07 1.7E-11 77.1 8.4 99 131-238 68-166 (215)
197 KOG3191 Predicted N6-DNA-methy 98.4 4.4E-06 9.6E-11 69.8 12.5 107 129-240 42-168 (209)
198 COG1041 Predicted DNA modifica 98.4 5.2E-06 1.1E-10 76.3 14.1 140 129-281 196-346 (347)
199 PF08123 DOT1: Histone methyla 98.4 4.3E-06 9.4E-11 72.2 12.9 112 123-238 35-156 (205)
200 COG4262 Predicted spermidine s 98.4 3.2E-06 6.9E-11 77.6 12.3 110 129-241 288-408 (508)
201 KOG2915 tRNA(1-methyladenosine 98.4 2.7E-06 5.9E-11 75.2 11.4 104 128-239 103-209 (314)
202 PF04816 DUF633: Family of unk 98.4 5.2E-06 1.1E-10 71.7 12.8 109 134-248 1-112 (205)
203 COG3963 Phospholipid N-methylt 98.4 3.3E-06 7.1E-11 69.7 10.8 106 127-240 45-156 (194)
204 COG0030 KsgA Dimethyladenosine 98.4 8.4E-06 1.8E-10 72.5 14.2 100 127-238 27-129 (259)
205 PRK00050 16S rRNA m(4)C1402 me 98.4 2E-06 4.3E-11 78.2 10.2 82 126-212 15-100 (296)
206 PRK10611 chemotaxis methyltran 98.4 8E-07 1.7E-11 80.5 7.3 110 131-241 116-263 (287)
207 PRK01544 bifunctional N5-gluta 98.4 3.3E-06 7.2E-11 82.5 11.3 109 129-241 346-463 (506)
208 PF05891 Methyltransf_PK: AdoM 98.4 4E-06 8.7E-11 72.4 10.4 106 130-240 55-161 (218)
209 PF01739 CheR: CheR methyltran 98.4 1.6E-06 3.5E-11 74.4 8.0 115 129-244 30-179 (196)
210 PRK09880 L-idonate 5-dehydroge 98.4 3.6E-06 7.8E-11 77.9 10.9 100 127-240 166-266 (343)
211 PF05958 tRNA_U5-meth_tr: tRNA 98.3 7.5E-06 1.6E-10 76.5 12.7 101 126-240 192-309 (352)
212 KOG1709 Guanidinoacetate methy 98.3 1.2E-05 2.6E-10 69.0 11.0 110 128-244 99-210 (271)
213 KOG1975 mRNA cap methyltransfe 98.2 5.1E-06 1.1E-10 75.2 8.4 109 129-240 116-237 (389)
214 PRK09424 pntA NAD(P) transhydr 98.2 7.6E-06 1.6E-10 79.6 9.9 105 129-241 163-286 (509)
215 TIGR00478 tly hemolysin TlyA f 98.2 7.9E-06 1.7E-10 71.7 8.9 89 129-238 74-169 (228)
216 COG4076 Predicted RNA methylas 98.2 8.3E-06 1.8E-10 68.6 8.3 143 130-280 32-187 (252)
217 PRK11783 rlmL 23S rRNA m(2)G24 98.2 1.9E-05 4.1E-10 80.2 12.4 111 129-241 189-348 (702)
218 PF12147 Methyltransf_20: Puta 98.2 4.8E-05 1E-09 68.3 13.4 108 129-240 134-249 (311)
219 KOG1269 SAM-dependent methyltr 98.1 7E-06 1.5E-10 76.7 7.8 161 67-240 54-215 (364)
220 TIGR03439 methyl_EasF probable 98.1 0.00012 2.6E-09 67.3 15.4 154 129-283 75-265 (319)
221 PRK10742 putative methyltransf 98.1 3.3E-05 7.1E-10 68.2 10.5 84 126-213 82-175 (250)
222 COG1064 AdhP Zn-dependent alco 98.1 2.3E-05 5E-10 72.3 9.8 104 122-242 158-261 (339)
223 PF01269 Fibrillarin: Fibrilla 98.0 8E-05 1.7E-09 64.5 11.6 106 127-240 70-178 (229)
224 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.0 1.5E-05 3.3E-10 70.9 7.3 150 129-281 55-256 (256)
225 KOG0820 Ribosomal RNA adenine 98.0 6.2E-05 1.3E-09 66.8 10.9 83 124-213 52-134 (315)
226 COG0116 Predicted N6-adenine-s 98.0 6.6E-05 1.4E-09 70.0 11.6 110 129-241 190-345 (381)
227 PF01861 DUF43: Protein of unk 98.0 0.0002 4.4E-09 62.8 13.3 106 123-236 37-144 (243)
228 TIGR03366 HpnZ_proposed putati 98.0 6.3E-05 1.4E-09 67.6 10.5 98 127-240 117-218 (280)
229 KOG1122 tRNA and rRNA cytosine 98.0 3E-05 6.6E-10 72.5 8.2 110 128-240 239-371 (460)
230 PF05971 Methyltransf_10: Prot 97.9 3.3E-05 7.2E-10 70.1 8.1 83 131-215 103-190 (299)
231 COG0293 FtsJ 23S rRNA methylas 97.9 0.00024 5.3E-09 61.0 12.7 127 129-275 44-191 (205)
232 PF09243 Rsm22: Mitochondrial 97.9 0.00016 3.6E-09 65.2 12.3 106 129-239 32-139 (274)
233 cd08237 ribitol-5-phosphate_DH 97.9 8.3E-05 1.8E-09 68.9 10.7 95 129-240 162-256 (341)
234 cd08230 glucose_DH Glucose deh 97.9 5.5E-05 1.2E-09 70.3 9.3 96 129-240 171-269 (355)
235 PF02384 N6_Mtase: N-6 DNA Met 97.9 5.6E-05 1.2E-09 69.1 9.1 112 128-240 44-183 (311)
236 cd08281 liver_ADH_like1 Zinc-d 97.9 6.3E-05 1.4E-09 70.4 9.5 99 128-240 189-290 (371)
237 COG1352 CheR Methylase of chem 97.9 0.00016 3.5E-09 64.9 11.5 112 130-243 96-244 (268)
238 COG2384 Predicted SAM-dependen 97.9 0.0003 6.5E-09 60.8 12.4 114 129-248 15-131 (226)
239 PF05219 DREV: DREV methyltran 97.9 7.1E-05 1.5E-09 66.3 8.6 94 130-239 94-187 (265)
240 KOG2187 tRNA uracil-5-methyltr 97.9 9.6E-05 2.1E-09 70.8 10.1 108 121-238 373-488 (534)
241 PF01728 FtsJ: FtsJ-like methy 97.8 3.4E-05 7.3E-10 65.0 5.9 121 130-270 23-166 (181)
242 cd00401 AdoHcyase S-adenosyl-L 97.8 8.3E-05 1.8E-09 70.7 9.0 89 129-240 200-289 (413)
243 PF04672 Methyltransf_19: S-ad 97.8 8.5E-05 1.9E-09 66.3 8.4 108 130-240 68-190 (267)
244 TIGR03451 mycoS_dep_FDH mycoth 97.8 9.7E-05 2.1E-09 68.7 9.3 99 129-241 175-277 (358)
245 TIGR02987 met_A_Alw26 type II 97.8 9.4E-05 2E-09 72.7 9.3 81 130-213 31-123 (524)
246 COG3897 Predicted methyltransf 97.8 8E-05 1.7E-09 63.1 7.5 101 129-240 78-178 (218)
247 cd08239 THR_DH_like L-threonin 97.8 0.00013 2.8E-09 67.1 9.5 102 126-241 159-263 (339)
248 TIGR00561 pntA NAD(P) transhyd 97.8 5.7E-05 1.2E-09 73.5 7.2 105 129-240 162-284 (511)
249 PLN02740 Alcohol dehydrogenase 97.7 0.00016 3.4E-09 68.0 9.4 100 128-241 196-301 (381)
250 PF06962 rRNA_methylase: Putat 97.7 0.00028 6.1E-09 57.1 9.2 85 158-243 1-95 (140)
251 PF07091 FmrO: Ribosomal RNA m 97.7 0.00018 4E-09 63.4 8.8 76 129-210 104-179 (251)
252 TIGR03201 dearomat_had 6-hydro 97.7 0.00029 6.2E-09 65.3 10.3 100 127-240 163-272 (349)
253 TIGR02822 adh_fam_2 zinc-bindi 97.7 0.00046 1E-08 63.6 11.5 93 127-240 162-254 (329)
254 PLN02827 Alcohol dehydrogenase 97.7 0.00021 4.5E-09 67.3 9.2 99 128-240 191-295 (378)
255 PRK11760 putative 23S rRNA C24 97.7 0.00018 3.8E-09 66.4 8.4 87 129-233 210-296 (357)
256 COG1062 AdhC Zn-dependent alco 97.7 0.00036 7.8E-09 64.0 10.0 101 128-241 183-286 (366)
257 TIGR01444 fkbM_fam methyltrans 97.6 0.00018 3.8E-09 57.9 7.2 59 133-195 1-59 (143)
258 COG0275 Predicted S-adenosylme 97.6 0.00098 2.1E-08 60.3 12.4 82 127-212 20-106 (314)
259 TIGR01202 bchC 2-desacetyl-2-h 97.6 0.00022 4.8E-09 65.1 8.6 89 129-241 143-232 (308)
260 PF00398 RrnaAD: Ribosomal RNA 97.6 0.00037 8E-09 62.4 9.6 102 127-240 27-134 (262)
261 COG0500 SmtA SAM-dependent met 97.6 0.0011 2.4E-08 51.3 11.3 100 134-240 52-155 (257)
262 TIGR00006 S-adenosyl-methyltra 97.6 0.00045 9.8E-09 63.1 10.1 81 127-212 17-102 (305)
263 TIGR02818 adh_III_F_hyde S-(hy 97.6 0.00037 8.1E-09 65.2 9.9 99 128-240 183-287 (368)
264 COG1889 NOP1 Fibrillarin-like 97.6 0.001 2.2E-08 56.8 11.3 139 122-269 68-216 (231)
265 PF00107 ADH_zinc_N: Zinc-bind 97.6 6.8E-05 1.5E-09 59.2 4.0 89 141-243 1-92 (130)
266 KOG3201 Uncharacterized conser 97.6 5.2E-05 1.1E-09 62.4 3.0 128 130-264 29-163 (201)
267 KOG1562 Spermidine synthase [A 97.6 0.00052 1.1E-08 61.7 9.3 110 129-240 120-236 (337)
268 PF02737 3HCDH_N: 3-hydroxyacy 97.5 0.0014 3E-08 55.5 11.5 98 133-240 1-114 (180)
269 PRK10309 galactitol-1-phosphat 97.5 0.00075 1.6E-08 62.3 10.6 98 129-240 159-260 (347)
270 cd08300 alcohol_DH_class_III c 97.5 0.00066 1.4E-08 63.4 9.7 99 128-240 184-288 (368)
271 PF13679 Methyltransf_32: Meth 97.5 0.0014 3.1E-08 53.0 10.4 101 129-237 24-128 (141)
272 TIGR02819 fdhA_non_GSH formald 97.5 0.00075 1.6E-08 63.9 10.1 106 128-241 183-300 (393)
273 PF02005 TRM: N2,N2-dimethylgu 97.5 0.00089 1.9E-08 63.1 10.2 104 130-241 49-155 (377)
274 PF07942 N2227: N2227-like pro 97.5 0.0012 2.6E-08 59.3 10.3 107 129-240 55-202 (270)
275 PF05148 Methyltransf_8: Hypot 97.4 0.00043 9.3E-09 59.6 7.0 87 129-240 71-158 (219)
276 KOG3178 Hydroxyindole-O-methyl 97.4 0.00099 2.2E-08 61.3 9.7 97 131-240 178-275 (342)
277 PLN03154 putative allyl alcoho 97.4 0.0013 2.8E-08 61.2 10.6 99 128-240 156-258 (348)
278 cd08296 CAD_like Cinnamyl alco 97.4 0.0014 3.1E-08 60.1 10.8 100 128-241 161-260 (333)
279 cd08285 NADP_ADH NADP(H)-depen 97.4 0.0012 2.6E-08 61.0 10.3 99 128-240 164-266 (351)
280 COG0686 Ald Alanine dehydrogen 97.4 0.00074 1.6E-08 61.2 8.1 102 129-239 166-267 (371)
281 PF04989 CmcI: Cephalosporin h 97.4 0.00048 1E-08 59.3 6.6 106 129-240 31-147 (206)
282 cd08238 sorbose_phosphate_red 97.4 0.0007 1.5E-08 64.4 8.3 105 129-240 174-288 (410)
283 TIGR02825 B4_12hDH leukotriene 97.3 0.002 4.3E-08 58.9 10.8 98 128-240 136-237 (325)
284 cd08277 liver_alcohol_DH_like 97.3 0.0013 2.9E-08 61.3 9.8 100 128-241 182-287 (365)
285 cd08283 FDH_like_1 Glutathione 97.3 0.0011 2.4E-08 62.4 9.3 106 129-241 183-307 (386)
286 cd08301 alcohol_DH_plants Plan 97.3 0.0015 3.3E-08 60.9 10.1 100 128-241 185-290 (369)
287 PLN02178 cinnamyl-alcohol dehy 97.3 0.0015 3.3E-08 61.4 10.1 96 129-240 177-273 (375)
288 PRK07066 3-hydroxybutyryl-CoA 97.3 0.0027 5.8E-08 58.6 11.0 101 131-240 7-119 (321)
289 PLN02586 probable cinnamyl alc 97.3 0.0019 4.1E-08 60.3 10.1 96 129-240 182-278 (360)
290 KOG2940 Predicted methyltransf 97.2 0.00043 9.3E-09 60.2 4.5 103 129-239 71-173 (325)
291 cd08233 butanediol_DH_like (2R 97.2 0.0029 6.4E-08 58.4 10.4 100 128-241 170-273 (351)
292 TIGR00518 alaDH alanine dehydr 97.2 0.0012 2.5E-08 62.2 7.7 101 130-240 166-267 (370)
293 cd08294 leukotriene_B4_DH_like 97.2 0.003 6.5E-08 57.4 10.2 98 128-240 141-241 (329)
294 cd08254 hydroxyacyl_CoA_DH 6-h 97.2 0.0022 4.7E-08 58.4 9.0 98 129-240 164-263 (338)
295 PRK01747 mnmC bifunctional tRN 97.2 0.0016 3.4E-08 65.9 8.7 111 130-241 57-207 (662)
296 PLN02514 cinnamyl-alcohol dehy 97.1 0.0042 9.1E-08 57.8 10.8 97 129-240 179-275 (357)
297 TIGR00936 ahcY adenosylhomocys 97.1 0.0034 7.4E-08 59.7 10.0 89 129-240 193-282 (406)
298 cd08293 PTGR2 Prostaglandin re 97.1 0.0031 6.7E-08 58.0 9.0 95 132-240 156-254 (345)
299 COG0604 Qor NADPH:quinone redu 97.1 0.0049 1.1E-07 57.0 10.3 99 128-241 140-242 (326)
300 KOG2198 tRNA cytosine-5-methyl 97.1 0.008 1.7E-07 55.8 11.5 111 128-240 153-296 (375)
301 PRK09422 ethanol-active dehydr 97.1 0.0058 1.3E-07 55.9 10.8 100 128-240 160-261 (338)
302 KOG0022 Alcohol dehydrogenase, 97.0 0.0044 9.5E-08 56.4 9.4 100 128-240 190-294 (375)
303 PRK07819 3-hydroxybutyryl-CoA 97.0 0.0037 8.1E-08 56.7 9.2 99 132-240 6-121 (286)
304 PRK10083 putative oxidoreducta 97.0 0.0065 1.4E-07 55.6 10.9 100 128-240 158-259 (339)
305 cd05279 Zn_ADH1 Liver alcohol 97.0 0.0051 1.1E-07 57.4 10.1 99 128-240 181-285 (365)
306 PRK05808 3-hydroxybutyryl-CoA 97.0 0.0082 1.8E-07 54.2 11.0 98 132-238 4-116 (282)
307 KOG3045 Predicted RNA methylas 97.0 0.0023 4.9E-08 56.7 6.7 85 129-240 179-264 (325)
308 cd08295 double_bond_reductase_ 97.0 0.008 1.7E-07 55.3 10.9 99 128-240 149-251 (338)
309 PRK08306 dipicolinate synthase 97.0 0.0055 1.2E-07 55.9 9.6 92 129-240 150-241 (296)
310 cd05188 MDR Medium chain reduc 97.0 0.0072 1.6E-07 52.8 10.0 98 129-240 133-232 (271)
311 COG1867 TRM1 N2,N2-dimethylgua 96.9 0.013 2.7E-07 54.5 11.6 101 131-240 53-154 (380)
312 PF07279 DUF1442: Protein of u 96.9 0.025 5.5E-07 48.8 12.5 106 129-241 40-150 (218)
313 PRK05476 S-adenosyl-L-homocyst 96.9 0.0042 9.2E-08 59.4 8.5 89 129-240 210-299 (425)
314 KOG4589 Cell division protein 96.9 0.0063 1.4E-07 51.5 8.2 129 129-275 68-216 (232)
315 PRK07530 3-hydroxybutyryl-CoA 96.8 0.018 3.8E-07 52.3 11.9 97 132-238 5-117 (292)
316 PHA01634 hypothetical protein 96.8 0.0054 1.2E-07 48.7 7.2 74 129-210 27-100 (156)
317 PF03721 UDPG_MGDP_dh_N: UDP-g 96.8 0.0049 1.1E-07 52.3 7.6 102 132-240 1-120 (185)
318 PRK09260 3-hydroxybutyryl-CoA 96.8 0.0075 1.6E-07 54.6 9.0 100 132-240 2-117 (288)
319 PRK08293 3-hydroxybutyryl-CoA 96.8 0.015 3.3E-07 52.6 11.0 101 132-240 4-120 (287)
320 cd08286 FDH_like_ADH2 formalde 96.8 0.01 2.2E-07 54.5 10.1 98 129-240 165-266 (345)
321 PF04445 SAM_MT: Putative SAM- 96.8 0.0034 7.3E-08 55.2 6.4 82 127-212 70-161 (234)
322 cd08231 MDR_TM0436_like Hypoth 96.8 0.011 2.3E-07 54.9 10.1 98 129-240 176-280 (361)
323 KOG2352 Predicted spermine/spe 96.7 0.014 3.1E-07 55.9 10.6 106 129-240 46-161 (482)
324 cd08278 benzyl_alcohol_DH Benz 96.7 0.0081 1.8E-07 56.0 8.8 98 129-240 185-285 (365)
325 PRK06035 3-hydroxyacyl-CoA deh 96.7 0.013 2.8E-07 53.2 9.7 97 132-237 4-118 (291)
326 PLN02494 adenosylhomocysteinas 96.7 0.011 2.4E-07 57.1 9.5 90 129-240 252-341 (477)
327 KOG3115 Methyltransferase-like 96.7 0.0082 1.8E-07 51.4 7.6 107 132-240 62-183 (249)
328 cd08232 idonate-5-DH L-idonate 96.7 0.014 3E-07 53.5 10.0 98 129-240 164-262 (339)
329 TIGR00692 tdh L-threonine 3-de 96.7 0.011 2.4E-07 54.3 9.3 98 129-240 160-261 (340)
330 KOG1596 Fibrillarin and relate 96.7 0.0073 1.6E-07 53.0 7.4 104 128-240 154-261 (317)
331 PF01795 Methyltransf_5: MraW 96.6 0.0069 1.5E-07 55.4 7.5 81 127-212 17-103 (310)
332 cd08291 ETR_like_1 2-enoyl thi 96.6 0.0089 1.9E-07 54.6 8.3 96 130-240 142-242 (324)
333 cd05278 FDH_like Formaldehyde 96.6 0.012 2.6E-07 54.0 9.0 98 129-240 166-267 (347)
334 cd08265 Zn_ADH3 Alcohol dehydr 96.6 0.012 2.7E-07 55.2 9.2 100 128-240 201-307 (384)
335 COG5459 Predicted rRNA methyla 96.6 0.0063 1.4E-07 56.1 6.8 108 129-240 112-225 (484)
336 KOG1253 tRNA methyltransferase 96.5 0.0031 6.7E-08 60.4 4.8 104 129-240 108-216 (525)
337 PLN02702 L-idonate 5-dehydroge 96.5 0.025 5.4E-07 52.6 10.6 99 128-240 179-285 (364)
338 PF01262 AlaDh_PNT_C: Alanine 96.5 0.0015 3.2E-08 54.5 2.1 103 129-240 18-139 (168)
339 cd08255 2-desacetyl-2-hydroxye 96.5 0.026 5.6E-07 50.0 10.2 95 128-240 95-190 (277)
340 PRK07502 cyclohexadienyl dehyd 96.5 0.024 5.2E-07 51.8 10.1 93 132-239 7-99 (307)
341 TIGR01470 cysG_Nterm siroheme 96.5 0.013 2.8E-07 50.6 7.8 105 129-251 7-112 (205)
342 KOG2352 Predicted spermine/spe 96.4 0.002 4.4E-08 61.6 2.9 107 130-240 295-416 (482)
343 PLN02545 3-hydroxybutyryl-CoA 96.4 0.026 5.7E-07 51.2 10.1 97 132-238 5-117 (295)
344 cd08242 MDR_like Medium chain 96.4 0.028 6.1E-07 51.0 10.3 93 128-240 153-245 (319)
345 cd08240 6_hydroxyhexanoate_dh_ 96.4 0.03 6.5E-07 51.6 10.2 98 129-240 174-274 (350)
346 cd08245 CAD Cinnamyl alcohol d 96.4 0.045 9.9E-07 49.8 11.3 97 128-240 160-256 (330)
347 cd08299 alcohol_DH_class_I_II_ 96.3 0.025 5.5E-07 53.0 9.4 99 128-240 188-292 (373)
348 cd08261 Zn_ADH7 Alcohol dehydr 96.3 0.025 5.4E-07 51.8 9.0 98 129-240 158-258 (337)
349 cd05213 NAD_bind_Glutamyl_tRNA 96.2 0.039 8.4E-07 50.7 10.1 95 129-240 176-272 (311)
350 PRK08268 3-hydroxy-acyl-CoA de 96.2 0.013 2.7E-07 57.6 7.3 101 130-240 6-122 (507)
351 cd08284 FDH_like_2 Glutathione 96.2 0.046 9.9E-07 50.1 10.7 97 129-240 166-266 (344)
352 PF02254 TrkA_N: TrkA-N domain 96.2 0.061 1.3E-06 41.4 9.7 93 134-241 1-97 (116)
353 cd05285 sorbitol_DH Sorbitol d 96.2 0.034 7.3E-07 51.1 9.7 99 128-240 160-265 (343)
354 cd08287 FDH_like_ADH3 formalde 96.2 0.048 1E-06 50.0 10.5 99 128-240 166-268 (345)
355 PRK05396 tdh L-threonine 3-deh 96.2 0.029 6.2E-07 51.5 9.0 98 129-240 162-263 (341)
356 COG1189 Predicted rRNA methyla 96.2 0.042 9.1E-07 48.2 9.3 98 129-240 78-178 (245)
357 PRK11154 fadJ multifunctional 96.2 0.018 3.9E-07 58.8 8.2 101 131-240 309-425 (708)
358 cd05281 TDH Threonine dehydrog 96.2 0.035 7.6E-07 51.0 9.4 98 129-240 162-262 (341)
359 COG2130 Putative NADP-dependen 96.1 0.066 1.4E-06 48.7 10.6 98 129-240 149-249 (340)
360 PRK11730 fadB multifunctional 96.1 0.023 5E-07 58.1 8.6 99 132-240 314-428 (715)
361 cd08260 Zn_ADH6 Alcohol dehydr 96.1 0.035 7.6E-07 51.0 9.2 98 129-240 164-264 (345)
362 PF05430 Methyltransf_30: S-ad 96.1 0.012 2.6E-07 46.8 5.2 89 185-282 32-124 (124)
363 cd05284 arabinose_DH_like D-ar 96.1 0.035 7.5E-07 50.8 9.1 98 129-240 166-266 (340)
364 PF03141 Methyltransf_29: Puta 96.1 0.0035 7.6E-08 60.3 2.5 97 132-240 119-219 (506)
365 PF05711 TylF: Macrocin-O-meth 96.1 0.033 7.1E-07 49.5 8.3 108 129-240 73-212 (248)
366 TIGR02441 fa_ox_alpha_mit fatt 96.0 0.06 1.3E-06 55.3 11.3 99 132-240 336-450 (737)
367 PRK11064 wecC UDP-N-acetyl-D-m 96.0 0.053 1.1E-06 51.9 10.3 97 132-240 4-119 (415)
368 cd05288 PGDH Prostaglandin deh 96.0 0.048 1E-06 49.5 9.7 98 129-240 144-244 (329)
369 cd08298 CAD2 Cinnamyl alcohol 96.0 0.06 1.3E-06 48.9 10.3 92 128-240 165-256 (329)
370 COG3129 Predicted SAM-dependen 96.0 0.035 7.5E-07 48.6 7.9 86 130-217 78-168 (292)
371 PRK06130 3-hydroxybutyryl-CoA 96.0 0.061 1.3E-06 49.1 10.1 98 132-237 5-112 (311)
372 cd08256 Zn_ADH2 Alcohol dehydr 96.0 0.052 1.1E-06 50.0 9.8 100 128-240 172-274 (350)
373 PTZ00075 Adenosylhomocysteinas 96.0 0.025 5.5E-07 54.7 7.8 89 129-240 252-341 (476)
374 cd08263 Zn_ADH10 Alcohol dehyd 96.0 0.037 8E-07 51.5 8.8 98 129-240 186-287 (367)
375 cd05283 CAD1 Cinnamyl alcohol 96.0 0.086 1.9E-06 48.4 11.1 98 127-240 166-263 (337)
376 cd08297 CAD3 Cinnamyl alcohol 95.9 0.074 1.6E-06 48.7 10.5 99 128-240 163-265 (341)
377 cd08279 Zn_ADH_class_III Class 95.9 0.039 8.4E-07 51.3 8.7 98 129-240 181-282 (363)
378 TIGR02437 FadB fatty oxidation 95.9 0.03 6.4E-07 57.3 8.4 100 132-240 314-428 (714)
379 PRK07417 arogenate dehydrogena 95.9 0.056 1.2E-06 48.7 9.4 86 133-237 2-88 (279)
380 PRK13771 putative alcohol dehy 95.9 0.092 2E-06 47.8 10.9 95 128-240 160-255 (334)
381 COG4798 Predicted methyltransf 95.9 0.02 4.4E-07 48.8 5.8 113 123-240 41-166 (238)
382 PRK12921 2-dehydropantoate 2-r 95.9 0.045 9.9E-07 49.6 8.7 98 132-238 1-100 (305)
383 KOG1331 Predicted methyltransf 95.8 0.0087 1.9E-07 53.7 3.7 97 129-239 44-142 (293)
384 TIGR02279 PaaC-3OHAcCoADH 3-hy 95.8 0.027 5.9E-07 55.2 7.5 101 130-240 4-120 (503)
385 cd08282 PFDH_like Pseudomonas 95.8 0.078 1.7E-06 49.6 10.3 105 128-240 174-285 (375)
386 cd08234 threonine_DH_like L-th 95.8 0.046 9.9E-07 49.8 8.3 98 129-240 158-257 (334)
387 PRK07531 bifunctional 3-hydrox 95.7 0.15 3.3E-06 49.9 12.3 102 132-243 5-118 (495)
388 PRK05562 precorrin-2 dehydroge 95.7 0.07 1.5E-06 46.7 8.8 103 129-252 23-129 (223)
389 PRK06249 2-dehydropantoate 2-r 95.7 0.089 1.9E-06 48.2 10.0 100 130-238 4-104 (313)
390 cd08243 quinone_oxidoreductase 95.6 0.12 2.6E-06 46.3 10.5 96 129-240 141-238 (320)
391 cd08236 sugar_DH NAD(P)-depend 95.6 0.083 1.8E-06 48.4 9.6 99 128-240 157-258 (343)
392 cd05286 QOR2 Quinone oxidoredu 95.6 0.073 1.6E-06 47.3 9.0 97 129-240 135-235 (320)
393 cd08235 iditol_2_DH_like L-idi 95.6 0.1 2.2E-06 47.8 9.8 99 128-240 163-265 (343)
394 PRK15057 UDP-glucose 6-dehydro 95.5 0.19 4.2E-06 47.6 11.8 101 133-240 2-117 (388)
395 cd08289 MDR_yhfp_like Yhfp put 95.5 0.11 2.4E-06 47.0 9.9 96 130-241 146-244 (326)
396 cd08244 MDR_enoyl_red Possible 95.5 0.14 3E-06 46.2 10.3 97 129-240 141-241 (324)
397 PRK03562 glutathione-regulated 95.4 0.13 2.8E-06 51.8 10.8 96 131-241 400-499 (621)
398 KOG1501 Arginine N-methyltrans 95.4 0.031 6.7E-07 53.1 5.8 60 133-196 69-128 (636)
399 cd08269 Zn_ADH9 Alcohol dehydr 95.4 0.14 3E-06 46.0 10.1 98 129-240 128-229 (312)
400 cd08246 crotonyl_coA_red croto 95.4 0.095 2.1E-06 49.3 9.3 97 129-240 192-315 (393)
401 COG0287 TyrA Prephenate dehydr 95.4 0.1 2.3E-06 47.2 9.1 94 132-239 4-97 (279)
402 PRK10669 putative cation:proto 95.4 0.11 2.3E-06 51.6 10.0 95 132-241 418-516 (558)
403 PF01210 NAD_Gly3P_dh_N: NAD-d 95.4 0.088 1.9E-06 43.2 7.9 100 133-244 1-106 (157)
404 PF11599 AviRa: RRNA methyltra 95.4 0.66 1.4E-05 40.3 13.2 113 129-243 50-216 (246)
405 PF13241 NAD_binding_7: Putati 95.3 0.094 2E-06 40.0 7.4 87 129-240 5-91 (103)
406 PRK03659 glutathione-regulated 95.3 0.12 2.7E-06 51.7 10.1 96 131-241 400-499 (601)
407 PTZ00354 alcohol dehydrogenase 95.3 0.12 2.6E-06 46.7 9.3 97 129-240 139-240 (334)
408 TIGR00872 gnd_rel 6-phosphoglu 95.3 0.15 3.2E-06 46.5 9.8 89 133-238 2-91 (298)
409 cd08241 QOR1 Quinone oxidoredu 95.3 0.13 2.8E-06 45.8 9.3 97 129-240 138-238 (323)
410 COG1748 LYS9 Saccharopine dehy 95.3 0.093 2E-06 49.6 8.5 73 132-212 2-78 (389)
411 PRK06718 precorrin-2 dehydroge 95.2 0.078 1.7E-06 45.6 7.4 72 129-212 8-80 (202)
412 KOG3987 Uncharacterized conser 95.2 0.011 2.3E-07 50.9 1.9 94 129-238 111-205 (288)
413 cd08274 MDR9 Medium chain dehy 95.2 0.15 3.2E-06 46.8 9.7 94 128-240 175-273 (350)
414 TIGR03026 NDP-sugDHase nucleot 95.2 0.3 6.5E-06 46.5 12.1 101 133-240 2-120 (411)
415 KOG1197 Predicted quinone oxid 95.2 0.27 5.8E-06 43.9 10.6 97 129-240 145-245 (336)
416 TIGR02440 FadJ fatty oxidation 95.2 0.064 1.4E-06 54.8 7.8 100 132-240 305-420 (699)
417 COG1250 FadB 3-hydroxyacyl-CoA 95.2 0.13 2.8E-06 47.2 8.9 105 132-240 4-118 (307)
418 cd08250 Mgc45594_like Mgc45594 95.2 0.15 3.2E-06 46.3 9.5 97 129-240 138-237 (329)
419 PF03446 NAD_binding_2: NAD bi 95.2 0.13 2.8E-06 42.5 8.3 90 132-240 2-94 (163)
420 PRK10754 quinone oxidoreductas 95.2 0.1 2.3E-06 47.3 8.4 97 129-240 139-239 (327)
421 PTZ00142 6-phosphogluconate de 95.2 0.2 4.3E-06 48.7 10.7 96 133-238 3-99 (470)
422 cd08276 MDR7 Medium chain dehy 95.1 0.13 2.8E-06 46.6 9.0 97 129-240 159-259 (336)
423 KOG4058 Uncharacterized conser 95.1 0.1 2.2E-06 42.6 7.2 100 129-238 71-170 (199)
424 PRK06522 2-dehydropantoate 2-r 95.1 0.15 3.3E-06 45.9 9.3 96 133-238 2-98 (304)
425 TIGR02817 adh_fam_1 zinc-bindi 95.1 0.13 2.7E-06 46.9 8.8 95 131-239 149-246 (336)
426 PF11899 DUF3419: Protein of u 95.0 0.068 1.5E-06 50.5 7.0 58 184-241 275-335 (380)
427 PRK06129 3-hydroxyacyl-CoA deh 95.0 0.33 7.2E-06 44.4 11.3 99 132-240 3-117 (308)
428 PRK03369 murD UDP-N-acetylmura 95.0 0.1 2.3E-06 50.9 8.3 73 129-214 10-82 (488)
429 COG4301 Uncharacterized conser 95.0 0.88 1.9E-05 40.5 13.0 109 129-239 77-192 (321)
430 PRK15182 Vi polysaccharide bio 95.0 0.47 1E-05 45.6 12.6 104 129-240 4-120 (425)
431 cd08252 AL_MDR Arginate lyase 95.0 0.15 3.2E-06 46.4 8.9 95 131-240 150-248 (336)
432 PRK07340 ornithine cyclodeamin 94.9 0.29 6.3E-06 44.8 10.6 95 129-240 123-217 (304)
433 PRK01438 murD UDP-N-acetylmura 94.9 0.16 3.5E-06 49.2 9.4 74 129-212 14-88 (480)
434 cd08249 enoyl_reductase_like e 94.9 0.078 1.7E-06 48.7 6.9 97 129-240 153-254 (339)
435 KOG2798 Putative trehalase [Ca 94.9 1.1 2.3E-05 41.2 13.7 106 130-240 150-296 (369)
436 cd08264 Zn_ADH_like2 Alcohol d 94.9 0.32 6.9E-06 44.1 10.8 92 128-240 160-253 (325)
437 cd08248 RTN4I1 Human Reticulon 94.9 0.16 3.5E-06 46.5 8.9 95 130-240 162-257 (350)
438 cd08292 ETR_like_2 2-enoyl thi 94.8 0.2 4.4E-06 45.2 9.4 98 128-240 137-238 (324)
439 PRK00066 ldh L-lactate dehydro 94.8 0.46 9.9E-06 43.8 11.7 106 129-240 4-122 (315)
440 TIGR02853 spore_dpaA dipicolin 94.8 0.13 2.8E-06 46.7 8.0 89 129-237 149-237 (287)
441 TIGR02356 adenyl_thiF thiazole 94.8 0.24 5.2E-06 42.5 9.2 94 130-229 20-135 (202)
442 PF02558 ApbA: Ketopantoate re 94.8 0.092 2E-06 42.4 6.3 98 134-239 1-100 (151)
443 smart00829 PKS_ER Enoylreducta 94.7 0.23 5E-06 43.3 9.3 97 129-240 103-205 (288)
444 KOG2793 Putative N2,N2-dimethy 94.7 0.19 4.1E-06 44.6 8.5 107 130-240 86-199 (248)
445 PRK14106 murD UDP-N-acetylmura 94.7 0.36 7.8E-06 46.3 11.1 74 130-213 4-79 (450)
446 cd05289 MDR_like_2 alcohol deh 94.7 0.32 7E-06 43.1 10.2 96 128-240 142-238 (309)
447 KOG0023 Alcohol dehydrogenase, 94.6 0.13 2.9E-06 47.1 7.4 106 122-240 173-279 (360)
448 COG1004 Ugd Predicted UDP-gluc 94.6 0.64 1.4E-05 43.9 12.0 101 132-240 1-120 (414)
449 PRK06719 precorrin-2 dehydroge 94.6 0.17 3.7E-06 41.8 7.5 69 129-212 11-80 (157)
450 cd08258 Zn_ADH4 Alcohol dehydr 94.6 0.26 5.6E-06 44.7 9.4 98 129-241 163-265 (306)
451 cd05280 MDR_yhdh_yhfp Yhdh and 94.6 0.24 5.3E-06 44.6 9.2 93 131-240 147-243 (325)
452 TIGR01751 crot-CoA-red crotony 94.6 0.23 4.9E-06 46.9 9.3 97 129-240 188-310 (398)
453 TIGR02823 oxido_YhdH putative 94.6 0.39 8.5E-06 43.4 10.6 96 128-240 142-241 (323)
454 PRK09496 trkA potassium transp 94.5 0.4 8.7E-06 45.9 11.1 95 132-240 1-99 (453)
455 cd08262 Zn_ADH8 Alcohol dehydr 94.5 0.28 6E-06 44.9 9.6 99 128-240 159-264 (341)
456 PLN02353 probable UDP-glucose 94.5 0.64 1.4E-05 45.3 12.4 104 132-240 2-127 (473)
457 PRK12771 putative glutamate sy 94.5 0.072 1.6E-06 52.9 6.1 35 129-165 135-169 (564)
458 PRK05708 2-dehydropantoate 2-r 94.5 0.25 5.4E-06 45.2 9.2 97 132-238 3-102 (305)
459 PTZ00082 L-lactate dehydrogena 94.5 0.44 9.6E-06 44.0 10.8 102 131-240 6-128 (321)
460 PRK02705 murD UDP-N-acetylmura 94.5 0.3 6.6E-06 47.0 10.1 74 133-213 2-79 (459)
461 PRK08324 short chain dehydroge 94.5 0.44 9.5E-06 48.5 11.7 105 130-240 421-557 (681)
462 cd05282 ETR_like 2-enoyl thioe 94.4 0.23 5E-06 44.7 8.7 97 129-240 137-237 (323)
463 TIGR02354 thiF_fam2 thiamine b 94.4 0.39 8.4E-06 41.3 9.6 101 130-237 20-142 (200)
464 cd05297 GH4_alpha_glucosidase_ 94.3 0.097 2.1E-06 50.2 6.2 77 133-212 2-84 (423)
465 cd05195 enoyl_red enoyl reduct 94.3 0.32 6.8E-06 42.4 9.1 100 128-240 106-209 (293)
466 PRK08507 prephenate dehydrogen 94.2 0.27 5.8E-06 44.1 8.6 86 133-237 2-88 (275)
467 TIGR02371 ala_DH_arch alanine 94.2 0.4 8.6E-06 44.3 9.8 97 129-240 126-222 (325)
468 PF01408 GFO_IDH_MocA: Oxidore 94.2 0.43 9.3E-06 36.7 8.7 90 133-240 2-93 (120)
469 COG1255 Uncharacterized protei 94.2 0.41 8.9E-06 37.3 8.1 89 130-240 13-102 (129)
470 cd08270 MDR4 Medium chain dehy 94.2 0.61 1.3E-05 41.6 10.9 91 129-240 131-222 (305)
471 PRK00045 hemA glutamyl-tRNA re 94.2 0.33 7.1E-06 46.6 9.5 97 129-240 180-279 (423)
472 PRK00094 gpsA NAD(P)H-dependen 94.2 0.55 1.2E-05 42.8 10.7 96 133-239 3-104 (325)
473 cd08290 ETR 2-enoyl thioester 94.2 0.18 3.8E-06 46.1 7.4 97 129-240 145-251 (341)
474 PRK09599 6-phosphogluconate de 94.1 0.35 7.5E-06 44.1 9.2 91 133-239 2-93 (301)
475 PF00056 Ldh_1_N: lactate/mala 94.1 1.6 3.4E-05 35.2 12.1 104 132-240 1-118 (141)
476 PRK12490 6-phosphogluconate de 94.0 0.37 8E-06 43.9 9.2 91 133-239 2-93 (299)
477 TIGR00027 mthyl_TIGR00027 meth 94.0 0.8 1.7E-05 41.0 11.1 108 129-240 80-197 (260)
478 PTZ00117 malate dehydrogenase; 94.0 0.45 9.8E-06 43.9 9.8 102 130-239 4-121 (319)
479 cd05293 LDH_1 A subgroup of L- 94.0 1.5 3.2E-05 40.4 13.0 105 130-240 2-120 (312)
480 PRK08229 2-dehydropantoate 2-r 94.0 0.24 5.2E-06 45.7 8.0 95 132-238 3-105 (341)
481 PRK09496 trkA potassium transp 93.9 0.7 1.5E-05 44.2 11.3 97 129-239 229-329 (453)
482 PRK12480 D-lactate dehydrogena 93.9 0.45 9.8E-06 44.1 9.6 90 129-239 144-233 (330)
483 PRK06141 ornithine cyclodeamin 93.9 0.5 1.1E-05 43.4 9.9 97 129-240 123-219 (314)
484 PRK06223 malate dehydrogenase; 93.9 0.95 2.1E-05 41.2 11.7 102 132-240 3-119 (307)
485 COG0569 TrkA K+ transport syst 93.9 0.68 1.5E-05 40.5 10.2 72 132-212 1-76 (225)
486 PTZ00357 methyltransferase; Pr 93.9 0.24 5.3E-06 49.8 8.0 102 133-235 703-830 (1072)
487 PF11968 DUF3321: Putative met 93.9 0.18 3.8E-06 43.8 6.3 88 131-240 52-149 (219)
488 cd08259 Zn_ADH5 Alcohol dehydr 93.9 0.97 2.1E-05 40.7 11.7 95 129-240 161-256 (332)
489 PF02153 PDH: Prephenate dehyd 93.9 0.4 8.6E-06 42.8 8.9 77 147-240 3-79 (258)
490 PRK05225 ketol-acid reductoiso 93.9 0.18 3.9E-06 48.5 6.9 96 129-244 34-135 (487)
491 cd05292 LDH_2 A subgroup of L- 93.8 0.86 1.9E-05 41.7 11.2 100 133-240 2-116 (308)
492 TIGR01915 npdG NADPH-dependent 93.8 1 2.2E-05 38.9 11.2 101 132-244 1-104 (219)
493 cd01492 Aos1_SUMO Ubiquitin ac 93.8 0.36 7.7E-06 41.4 8.1 79 130-211 20-119 (197)
494 PRK08655 prephenate dehydrogen 93.8 0.52 1.1E-05 45.4 10.0 90 133-240 2-92 (437)
495 PRK05786 fabG 3-ketoacyl-(acyl 93.7 1.3 2.8E-05 38.0 11.8 105 130-240 4-135 (238)
496 cd01487 E1_ThiF_like E1_ThiF_l 93.7 0.66 1.4E-05 38.9 9.5 90 133-229 1-112 (174)
497 PRK07109 short chain dehydroge 93.7 1.1 2.3E-05 41.4 11.8 76 130-212 7-95 (334)
498 PF03807 F420_oxidored: NADP o 93.7 0.59 1.3E-05 34.5 8.3 87 133-238 1-92 (96)
499 PRK12769 putative oxidoreducta 93.7 0.086 1.9E-06 53.4 4.8 35 130-166 326-360 (654)
500 PLN02350 phosphogluconate dehy 93.7 0.45 9.8E-06 46.5 9.6 98 132-238 7-105 (493)
No 1
>PLN03075 nicotianamine synthase; Provisional
Probab=100.00 E-value=2.4e-67 Score=471.48 Aligned_cols=275 Identities=60% Similarity=0.938 Sum_probs=259.4
Q ss_pred CCCCCchHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHhccCCcccccccCchhHHHHHHHHHHHHHHhhhhhhHH
Q 039591 9 IESQIPTELLIARVMQLHASISKLESLKPSKQVNSLFTQLVKLCTPSYSIDIKDLPQEVQEMRESLIVLCGRAEGLLELE 88 (284)
Q Consensus 9 ~~~~~~~~~~~~~i~~~~~~~~~l~~l~p~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e~~~E~~ 88 (284)
.+..+++|.+|++|+++|++|++|++|+||+++|+||++||++|++++++|++++++++|+|++.|+++|++||+++|.|
T Consensus 2 ~~~~~~~~~~i~~i~~~y~~i~~l~~l~ps~~v~~lf~~Lv~~c~~~~~~~~~~l~~~i~~~~~~l~~l~~~ae~~lE~~ 81 (296)
T PLN03075 2 EEMGCQEELLVEKICDLYAQISKLESLKPSKEVNTLFTQLVSTCIPPSSIDVTKLCEEIQEMRSKLIKLCGEAEGLLEAH 81 (296)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhCcccCCchhHHHHHHHHHHHhCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCccccccccccccchhhhhhHHHHHHHHhhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHH
Q 039591 89 FATFLNKIPQPLNNLNLFPYYGNYVKLASFECRILKENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAA 168 (284)
Q Consensus 89 ~a~~~~~~~~~~~~l~~fp~~~~y~~l~~~E~~~l~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~ 168 (284)
||+.+.+.++||++|+.||||.||.++.++|.+.+......++++|+||||||+|++++++++++.++++|+++|+|+++
T Consensus 82 ~a~~i~~~~~p~~~l~~Fpy~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~a 161 (296)
T PLN03075 82 FSTILGSFDNPLDHLNLFPYYNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSA 161 (296)
T ss_pred HHHHHhcCCcHHHHhhcCCchHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHH
Confidence 99999999999999999999999999999999999887767899999999999999999999767899999999999999
Q ss_pred HHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEeccchhhhc
Q 039591 169 NNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSAKGARAFL 248 (284)
Q Consensus 169 ~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~~g~~~~l 248 (284)
++.||+++++..++.++|+|+++|+.+....+++||+||+++.+++.+++|.++++++++.|+|||++++++++|+|+++
T Consensus 162 i~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~L 241 (296)
T PLN03075 162 NDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFL 241 (296)
T ss_pred HHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhc
Confidence 99999999653447789999999998864456899999999888888899999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcEEEEEEcCCCceeeEEEEEeecC
Q 039591 249 YPVVERHDLLDFEVLSIFHPIDEVINSVILVRKPV 283 (284)
Q Consensus 249 yp~v~~~~l~gf~~~~~~~p~~~v~nsvi~~rk~~ 283 (284)
||+++++++.||+++.++||+++|||||||+||+.
T Consensus 242 Yp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 242 YPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPG 276 (296)
T ss_pred CCCCChhhCCCeEEEEEECCCCCceeeEEEEEeec
Confidence 99999999999999999999999999999999964
No 2
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=100.00 E-value=5e-67 Score=465.21 Aligned_cols=272 Identities=52% Similarity=0.813 Sum_probs=166.3
Q ss_pred CCchHHHHHHHHHHHHHhccCCCCCCchhHHHHHHHHHHhccCCcccccccCchhHHHHHHHHHHHHHHhhhhhhHHHHH
Q 039591 12 QIPTELLIARVMQLHASISKLESLKPSKQVNSLFTQLVKLCTPSYSIDIKDLPQEVQEMRESLIVLCGRAEGLLELEFAT 91 (284)
Q Consensus 12 ~~~~~~~~~~i~~~~~~~~~l~~l~p~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e~~~E~~~a~ 91 (284)
+.++|.+|++|+++|++|++|++|+||+++|+||++||.+|.++++.|+..|+++++++++.|+++|+++|+++|.|||+
T Consensus 2 ~~~~~~lv~~i~~ly~~i~~L~sl~ps~~vn~lF~~Lv~~c~~~~~~dv~~L~~~i~~~~~~L~~~~~~ae~~LE~~~A~ 81 (276)
T PF03059_consen 2 NKEAEALVEKILSLYAQISKLESLSPSPEVNALFTQLVSLCIPPSPIDVTKLSPEIQSIRPSLRRLCSEAEGLLESHWAK 81 (276)
T ss_dssp ----------------------------------------------------TGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccccccccccccccccccccccccccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred HhccCCccccccccccccchhhhhhHHHHHHHHhhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHH
Q 039591 92 FLNKIPQPLNNLNLFPYYGNYVKLASFECRILKENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNV 171 (284)
Q Consensus 92 ~~~~~~~~~~~l~~fp~~~~y~~l~~~E~~~l~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~ 171 (284)
.+.+.++||++|+.||||.||.+++++|++++.......|++|++|||||+|+|++++++++.+++.|+++|+||++++.
T Consensus 82 ~l~~~~~p~~~L~~FpYy~nY~~L~~lE~~~l~~~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~ 161 (276)
T PF03059_consen 82 RLLASDNPLDHLESFPYYPNYEKLVRLEYAALRIHAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANEL 161 (276)
T ss_dssp HHHH-SSHHHHHHTSTTHHHHHHHHHHHHH-HTT--TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHH
T ss_pred HHHhCCCHHHHHhcCCcHHHHHHHHHHHHHHHhhcCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHH
Confidence 99999999999999999999999999999988766656778999999999999999999866788999999999999999
Q ss_pred HHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEeccchhhhcCCC
Q 039591 172 ARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSAKGARAFLYPV 251 (284)
Q Consensus 172 A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~~g~~~~lyp~ 251 (284)
|++++++..+++.+|+|+++|+.+...++..||+||+++++++.+++|.++++++.++|+||++|++|+++|+|+++||.
T Consensus 162 a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~ 241 (276)
T PF03059_consen 162 ARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPV 241 (276)
T ss_dssp HHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS--
T ss_pred HHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCC
Confidence 99998844447899999999999877778899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcEEEEEEcCCCceeeEEEEEeecC
Q 039591 252 VERHDLLDFEVLSIFHPIDEVINSVILVRKPV 283 (284)
Q Consensus 252 v~~~~l~gf~~~~~~~p~~~v~nsvi~~rk~~ 283 (284)
++++++.||+++.++||+++|+|||||+||+.
T Consensus 242 vd~~~l~gf~~~~~~hP~~~ViNSvv~~rk~~ 273 (276)
T PF03059_consen 242 VDPEDLRGFEVLAVVHPTDEVINSVVFARKKQ 273 (276)
T ss_dssp --TGGGTTEEEEEEE---TT---EEEEE----
T ss_pred CChHHCCCeEEEEEECCCCCceeEEEEEEecc
Confidence 99999999999999999999999999999963
No 3
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.75 E-value=1.4e-17 Score=129.21 Aligned_cols=108 Identities=22% Similarity=0.377 Sum_probs=89.1
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEc
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLA 209 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~ 209 (284)
|+.+||||||| .|..++.+++ ..++.+|+++|+||++++.|++++...+ ..++++|+++|+.......++||+|++.
T Consensus 1 p~~~vLDlGcG-~G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCG-TGRLSIALAR-LFPGARVVGVDISPEMLEIARERAAEEG-LSDRITFVQGDAEFDPDFLEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTT-TSHHHHHHHH-HHTTSEEEEEESSHHHHHHHHHHHHHTT-TTTTEEEEESCCHGGTTTSSCEEEEEEC
T ss_pred CCCEEEEEcCc-CCHHHHHHHh-cCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECccccCcccCCCCCEEEEC
Confidence 57899999999 8999999998 5689999999999999999999985533 5689999999992112233789999998
Q ss_pred C-cCC-CC-HHHHHHHHHHHHhccccCcEEEEEe
Q 039591 210 A-LVG-MS-KEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 210 ~-~~~-~~-~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
. ... .. .+++.++++.+.+.|+|||++++..
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 8 221 22 2578899999999999999999864
No 4
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.65 E-value=1.4e-15 Score=131.51 Aligned_cols=106 Identities=22% Similarity=0.398 Sum_probs=95.6
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEE-cchhhhhcc--CCCcc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLK-ATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLT-GDILQVKEK--LGEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~-~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~-~D~~~~~~~--l~~fD 204 (284)
.++++|||||++ +|+++++||. ..+ .++++++|++|++.+.|++++++.| ++++++.+. +|+.+.... .+.||
T Consensus 58 ~~~k~iLEiGT~-~GySal~mA~-~l~~~g~l~tiE~~~e~~~~A~~n~~~ag-~~~~i~~~~~gdal~~l~~~~~~~fD 134 (219)
T COG4122 58 SGPKRILEIGTA-IGYSALWMAL-ALPDDGRLTTIERDEERAEIARENLAEAG-VDDRIELLLGGDALDVLSRLLDGSFD 134 (219)
T ss_pred cCCceEEEeecc-cCHHHHHHHh-hCCCCCeEEEEeCCHHHHHHHHHHHHHcC-CcceEEEEecCcHHHHHHhccCCCcc
Confidence 688999999999 9999999999 556 7899999999999999999999965 788899999 599887765 38999
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
+||+++....+ +++++.+.+.|+|||++++.+.
T Consensus 135 liFIDadK~~y----p~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 135 LVFIDADKADY----PEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred EEEEeCChhhC----HHHHHHHHHHhCCCcEEEEeec
Confidence 99999998767 8999999999999999999883
No 5
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.65 E-value=7.3e-16 Score=132.93 Aligned_cols=107 Identities=20% Similarity=0.396 Sum_probs=92.1
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC------CC
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL------GE 202 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l------~~ 202 (284)
..+++||+||+| +|++++++|+...++++|+++|++++..+.|++++++.| ++++|+++.+|+.+....+ ++
T Consensus 44 ~~~k~vLEIGt~-~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag-~~~~I~~~~gda~~~l~~l~~~~~~~~ 121 (205)
T PF01596_consen 44 TRPKRVLEIGTF-TGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG-LDDRIEVIEGDALEVLPELANDGEEGQ 121 (205)
T ss_dssp HT-SEEEEESTT-TSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT-GGGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred cCCceEEEeccc-cccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC-CCCcEEEEEeccHhhHHHHHhccCCCc
Confidence 678999999999 999999999843457999999999999999999999855 7789999999998865433 47
Q ss_pred ccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 203 YDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 203 fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
||+||+++....+ ..+++.+.+.|+|||++++.+.
T Consensus 122 fD~VFiDa~K~~y----~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 122 FDFVFIDADKRNY----LEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp EEEEEEESTGGGH----HHHHHHHHHHEEEEEEEEEETT
T ss_pred eeEEEEcccccch----hhHHHHHhhhccCCeEEEEccc
Confidence 9999999987655 7889999999999999999984
No 6
>PLN02244 tocopherol O-methyltransferase
Probab=99.63 E-value=7.6e-15 Score=136.16 Aligned_cols=159 Identities=16% Similarity=0.300 Sum_probs=113.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHhccCCccccccccccccc------hhhhh-hHHHHHHHHhhcc-----CCCCe
Q 039591 66 EVQEMRESLIVLCGRAEGLLELEFATFLNKIPQPLNNLNLFPYYG------NYVKL-ASFECRILKENGV-----VQPKK 133 (284)
Q Consensus 66 ~~~~~~~~l~~l~~~~e~~~E~~~a~~~~~~~~~~~~l~~fp~~~------~y~~l-~~~E~~~l~~~~~-----~~~~~ 133 (284)
....+.+.++..+.+....+|..|.+++.. .||. ++.+. .++....+..... .++++
T Consensus 53 ~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h~-----------g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~ 121 (340)
T PLN02244 53 ATADLKEGIAEFYDESSGVWEDVWGEHMHH-----------GYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKR 121 (340)
T ss_pred chhhHHHHHHHHHccchHHHHHHhCCccee-----------eccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCe
Confidence 445667777788877666677766544321 1121 11111 1111223333333 56789
Q ss_pred EEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcCcCC
Q 039591 134 VAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAALVG 213 (284)
Q Consensus 134 VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~~~~ 213 (284)
||||||| .|..+..+++ . .+++|+++|+|+.+++.|+++.+..+ +..+++|+++|+.+.....+.||+|++.....
T Consensus 122 VLDiGCG-~G~~~~~La~-~-~g~~v~gvD~s~~~i~~a~~~~~~~g-~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~ 197 (340)
T PLN02244 122 IVDVGCG-IGGSSRYLAR-K-YGANVKGITLSPVQAARANALAAAQG-LSDKVSFQVADALNQPFEDGQFDLVWSMESGE 197 (340)
T ss_pred EEEecCC-CCHHHHHHHH-h-cCCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEcCcccCCCCCCCccEEEECCchh
Confidence 9999999 8989999998 2 37899999999999999999887644 55789999999987654457899999865443
Q ss_pred CCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 214 MSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 214 ~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+. .++.++++++.++|||||++++..
T Consensus 198 h~-~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 198 HM-PDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred cc-CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 32 567899999999999999998854
No 7
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.63 E-value=3e-15 Score=131.27 Aligned_cols=109 Identities=22% Similarity=0.299 Sum_probs=93.8
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEE
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCI 206 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V 206 (284)
...+|.+||||||| +|-.++.+++ ..+.++|+++|+|+.|++.|++.....+ .. .++|+.+|+.+++.+...||+|
T Consensus 48 ~~~~g~~vLDva~G-TGd~a~~~~k-~~g~g~v~~~D~s~~ML~~a~~k~~~~~-~~-~i~fv~~dAe~LPf~D~sFD~v 123 (238)
T COG2226 48 GIKPGDKVLDVACG-TGDMALLLAK-SVGTGEVVGLDISESMLEVAREKLKKKG-VQ-NVEFVVGDAENLPFPDNSFDAV 123 (238)
T ss_pred CCCCCCEEEEecCC-ccHHHHHHHH-hcCCceEEEEECCHHHHHHHHHHhhccC-cc-ceEEEEechhhCCCCCCccCEE
Confidence 33589999999999 9999999999 4568899999999999999999988755 33 3999999999988777999999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.++...... .++.++++++.|+|||||++++-.
T Consensus 124 t~~fglrnv-~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 124 TISFGLRNV-TDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred EeeehhhcC-CCHHHHHHHHHHhhcCCeEEEEEE
Confidence 988765333 578999999999999999988754
No 8
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.62 E-value=4.4e-15 Score=130.83 Aligned_cols=106 Identities=20% Similarity=0.286 Sum_probs=91.5
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC------CC
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL------GE 202 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l------~~ 202 (284)
.++++|||+||| +|++++++++...++++|+++|+|+++++.|++++++.| +.++++++.+|+.+....+ ++
T Consensus 67 ~~~~~vLEiGt~-~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g-l~~~i~~~~gda~~~L~~l~~~~~~~~ 144 (234)
T PLN02781 67 MNAKNTLEIGVF-TGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG-VDHKINFIQSDALSALDQLLNNDPKPE 144 (234)
T ss_pred hCCCEEEEecCc-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence 578899999999 999999999843457899999999999999999998865 6789999999998864432 57
Q ss_pred ccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 203 YDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 203 fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
||+||+++....+ ..+++.+.+.|+|||++++.+
T Consensus 145 fD~VfiDa~k~~y----~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 145 FDFAFVDADKPNY----VHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred CCEEEECCCHHHH----HHHHHHHHHhcCCCeEEEEEc
Confidence 9999999876433 688999999999999999877
No 9
>PLN02476 O-methyltransferase
Probab=99.61 E-value=5.2e-15 Score=132.66 Aligned_cols=107 Identities=15% Similarity=0.194 Sum_probs=93.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC------CC
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL------GE 202 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l------~~ 202 (284)
.++++|||||+| +|++++++|+...++++|+++|.++++.+.|++++++.| +.++++++.||+.+....+ ++
T Consensus 117 ~~ak~VLEIGT~-tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG-l~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 117 LGAERCIEVGVY-TGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG-VSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred cCCCeEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 678999999999 999999999833347789999999999999999999866 7789999999998865433 57
Q ss_pred ccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 203 YDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 203 fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
||+||+++....+ ..+++.+.+.|+|||++++.+.
T Consensus 195 FD~VFIDa~K~~Y----~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 195 YDFAFVDADKRMY----QDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred CCEEEECCCHHHH----HHHHHHHHHhcCCCcEEEEecC
Confidence 9999999987444 8899999999999999999873
No 10
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.61 E-value=9.4e-15 Score=120.04 Aligned_cols=110 Identities=23% Similarity=0.358 Sum_probs=91.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC-CCccEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL-GEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l-~~fD~V~ 207 (284)
+.+.+|||+||| .|..+..+++...++.+++++|+|+++++.|++.++..+ + .+++|+++|+.+....+ +.||+|+
T Consensus 2 ~~~~~iLDlGcG-~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-~-~ni~~~~~d~~~l~~~~~~~~D~I~ 78 (152)
T PF13847_consen 2 KSNKKILDLGCG-TGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-L-DNIEFIQGDIEDLPQELEEKFDIII 78 (152)
T ss_dssp TTTSEEEEET-T-TSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-S-TTEEEEESBTTCGCGCSSTTEEEEE
T ss_pred CCCCEEEEecCc-CcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-c-cccceEEeehhccccccCCCeeEEE
Confidence 457899999999 999999999435688999999999999999999988766 4 48999999999843113 6899999
Q ss_pred EcCcCCCCHHHHHHHHHHHHhccccCcEEEEEecc
Q 039591 208 LAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSAK 242 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~~ 242 (284)
+...... ..+...+++.+.+.|++||++++....
T Consensus 79 ~~~~l~~-~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHH-FPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGG-TSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhh-ccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9875533 256678999999999999999987744
No 11
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.60 E-value=4e-15 Score=130.91 Aligned_cols=110 Identities=17% Similarity=0.237 Sum_probs=80.1
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEE
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCI 206 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V 206 (284)
...++.+|||+||| +|..+..++++..+.++|+++|+|+.|++.|++.....+ . .+++++++|+.+.+.+.+.||+|
T Consensus 44 ~~~~g~~vLDv~~G-tG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-~-~~i~~v~~da~~lp~~d~sfD~v 120 (233)
T PF01209_consen 44 GLRPGDRVLDVACG-TGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-L-QNIEFVQGDAEDLPFPDNSFDAV 120 (233)
T ss_dssp T--S--EEEEET-T-TSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BTTB--S-TT-EEEE
T ss_pred CCCCCCEEEEeCCC-hHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-C-CCeeEEEcCHHHhcCCCCceeEE
Confidence 34778999999999 899999999844567899999999999999999988754 2 48999999999877666899999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
++....... +++.+.++++.|+|||||++++-.
T Consensus 121 ~~~fglrn~-~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 121 TCSFGLRNF-PDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp EEES-GGG--SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EHHhhHHhh-CCHHHHHHHHHHHcCCCeEEEEee
Confidence 987655322 467889999999999999998755
No 12
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.59 E-value=3.3e-14 Score=121.06 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=87.5
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
+++.+|||+||| .|..++.+++ ..++++|+++|+++.+++.|+++.+..+ ++ +++++++|+.+... .++||+|++
T Consensus 44 ~~g~~VLDiGcG-tG~~al~la~-~~~~~~V~giD~s~~~l~~A~~~~~~~~-l~-~i~~~~~d~~~~~~-~~~fDlV~~ 118 (187)
T PRK00107 44 PGGERVLDVGSG-AGFPGIPLAI-ARPELKVTLVDSLGKKIAFLREVAAELG-LK-NVTVVHGRAEEFGQ-EEKFDVVTS 118 (187)
T ss_pred CCCCeEEEEcCC-CCHHHHHHHH-HCCCCeEEEEeCcHHHHHHHHHHHHHcC-CC-CEEEEeccHhhCCC-CCCccEEEE
Confidence 457899999999 8999999987 5688999999999999999999998865 43 49999999987544 468999998
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
.+. .+...+++.+.+.|+|||++++...
T Consensus 119 ~~~-----~~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 119 RAV-----ASLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred ccc-----cCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 763 2347899999999999999998753
No 13
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.59 E-value=1.4e-14 Score=128.20 Aligned_cols=107 Identities=16% Similarity=0.260 Sum_probs=94.3
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC-------C
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL-------G 201 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l-------~ 201 (284)
.++++||+||++ +|++++++|+...++++|+++|++++..+.|++++++.| +.++|+++.||+.+....+ +
T Consensus 78 ~~ak~iLEiGT~-~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag-~~~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 78 INAKNTMEIGVY-TGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG-VAHKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred hCCCEEEEEeCh-hhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC-CCCceEEEeccHHHHHHHHHhccccCC
Confidence 578899999999 999999999844467899999999999999999999866 7799999999999875543 5
Q ss_pred CccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 202 EYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 202 ~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
+||+||+++....+ ...++.+.+.|+|||+|++.+.
T Consensus 156 ~fD~iFiDadK~~Y----~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 156 TFDFIFVDADKDNY----INYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred cccEEEecCCHHHh----HHHHHHHHHhcCCCeEEEEcCC
Confidence 89999999987555 7889999999999999999873
No 14
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.58 E-value=1.2e-14 Score=108.52 Aligned_cols=95 Identities=22% Similarity=0.344 Sum_probs=79.9
Q ss_pred EEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcCcCCC
Q 039591 135 AFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAALVGM 214 (284)
Q Consensus 135 L~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~~~~~ 214 (284)
||+||| .|..+..+++ . ++.+|+++|+++++++.+++.... .++.+..+|+.+...+.+.||+|++.....+
T Consensus 1 LdiG~G-~G~~~~~l~~-~-~~~~v~~~D~~~~~~~~~~~~~~~-----~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~ 72 (95)
T PF08241_consen 1 LDIGCG-TGRFAAALAK-R-GGASVTGIDISEEMLEQARKRLKN-----EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHH 72 (95)
T ss_dssp EEET-T-TSHHHHHHHH-T-TTCEEEEEES-HHHHHHHHHHTTT-----STEEEEESBTTSSSS-TT-EEEEEEESHGGG
T ss_pred CEecCc-CCHHHHHHHh-c-cCCEEEEEeCCHHHHHHHHhcccc-----cCchheeehHHhCccccccccccccccceee
Confidence 799999 9999999998 3 789999999999999999998754 4567999999987655689999999887655
Q ss_pred CHHHHHHHHHHHHhccccCcEEEE
Q 039591 215 SKEEKMKIIRHIRKYMKDGGILLV 238 (284)
Q Consensus 215 ~~~~k~~~l~~~~~~L~pGG~lv~ 238 (284)
. ++..++++++.++|||||++++
T Consensus 73 ~-~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 73 L-EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp S-SHHHHHHHHHHHHEEEEEEEEE
T ss_pred c-cCHHHHHHHHHHHcCcCeEEeC
Confidence 5 7889999999999999999985
No 15
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.58 E-value=2.7e-14 Score=121.05 Aligned_cols=127 Identities=17% Similarity=0.191 Sum_probs=94.7
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEc
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLA 209 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~ 209 (284)
++.+|||+||| .|..++.+++ ..++++|+++|+|+.+++.+++++++.+ + .+++++++|+.+.. ..++||+|++.
T Consensus 42 ~~~~vLDiGcG-tG~~s~~la~-~~~~~~V~~iD~s~~~~~~a~~~~~~~~-~-~~i~~i~~d~~~~~-~~~~fD~I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSG-AGFPGIPLAI-ARPELKLTLLESNHKKVAFLREVKAELG-L-NNVEIVNGRAEDFQ-HEEQFDVITSR 116 (181)
T ss_pred CCCeEEEecCC-CCccHHHHHH-HCCCCeEEEEeCcHHHHHHHHHHHHHhC-C-CCeEEEecchhhcc-ccCCccEEEeh
Confidence 47899999999 8999999887 5677899999999999999999988755 4 46999999998752 23789999987
Q ss_pred CcCCCCHHHHHHHHHHHHhccccCcEEEEEeccchhhhcCCCCCCCCCCCcEEEEEE
Q 039591 210 ALVGMSKEEKMKIIRHIRKYMKDGGILLVRSAKGARAFLYPVVERHDLLDFEVLSIF 266 (284)
Q Consensus 210 ~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~~g~~~~lyp~v~~~~l~gf~~~~~~ 266 (284)
+ .+ +...+++.+.+.|+|||++++........-+.-..+..-..||+.+..-
T Consensus 117 ~-~~----~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 168 (181)
T TIGR00138 117 A-LA----SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVP 168 (181)
T ss_pred h-hh----CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeecc
Confidence 6 32 2356888899999999999987532211111111122223688887653
No 16
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.57 E-value=9.1e-14 Score=121.69 Aligned_cols=110 Identities=17% Similarity=0.223 Sum_probs=89.1
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEE
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCI 206 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V 206 (284)
...++++|||+||| .|..+..+++...++++|+++|+++.+++.|+++.+..+ + ++++++++|+.+.....+.||+|
T Consensus 42 ~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~fD~V 118 (231)
T TIGR02752 42 NVQAGTSALDVCCG-TADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-L-HNVELVHGNAMELPFDDNSFDYV 118 (231)
T ss_pred CCCCCCEEEEeCCC-cCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-C-CceEEEEechhcCCCCCCCccEE
Confidence 34678899999999 899999998733467899999999999999999987644 3 57999999998754334789999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+++...+.. ++..++++++.+.|+|||++++..
T Consensus 119 ~~~~~l~~~-~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 119 TIGFGLRNV-PDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred EEecccccC-CCHHHHHHHHHHHcCcCeEEEEEE
Confidence 987655333 455789999999999999998754
No 17
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.57 E-value=6e-14 Score=124.55 Aligned_cols=127 Identities=17% Similarity=0.254 Sum_probs=96.2
Q ss_pred ccccchhhhhhHHHHHHHHhhccCCCCeEEEecCCCChHHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHHHhhccCCCC
Q 039591 106 FPYYGNYVKLASFECRILKENGVVQPKKVAFVGSGPMPLTSIVMAKNH-LKATHFDNFDIDEAANNVARRIVATDFEFEK 184 (284)
Q Consensus 106 fp~~~~y~~l~~~E~~~l~~~~~~~~~~VL~iGsGp~G~~ai~la~~~-~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~ 184 (284)
.|.|.....+... +......++.+||||||| .|..+..+++.. .++++|+++|+|+.|++.|+++++..+ ...
T Consensus 36 ~p~y~~~~~~~~~----~~~~~~~~~~~vLDlGcG-tG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~-~~~ 109 (247)
T PRK15451 36 VPGYSNIISMIGM----LAERFVQPGTQVYDLGCS-LGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK-APT 109 (247)
T ss_pred CCChHHHHHHHHH----HHHHhCCCCCEEEEEccc-CCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCC
Confidence 4666654443221 111123577899999999 899888887631 478999999999999999999987654 456
Q ss_pred CeEEEEcchhhhhccCCCccEEEEcCcC-CCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 185 RMKFLTGDILQVKEKLGEYDCIFLAALV-GMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 185 ~v~~~~~D~~~~~~~l~~fD~V~~~~~~-~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+++++++|+.+.. ...+|+|++.... ....+++..+++++.+.|||||.+++..
T Consensus 110 ~v~~~~~d~~~~~--~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 110 PVDVIEGDIRDIA--IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred CeEEEeCChhhCC--CCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 8999999998643 3569999876543 3445678899999999999999998864
No 18
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.55 E-value=1.1e-13 Score=116.07 Aligned_cols=117 Identities=20% Similarity=0.164 Sum_probs=100.4
Q ss_pred hhHHHHHHH--HhhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcc
Q 039591 115 LASFECRIL--KENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGD 192 (284)
Q Consensus 115 l~~~E~~~l--~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D 192 (284)
+.+.|..++ .++.+.++++++||||| +|-.++.+++ ..|.++|+++|.++++++..++|.++++ -++++++.||
T Consensus 17 ~TK~EIRal~ls~L~~~~g~~l~DIGaG-tGsi~iE~a~-~~p~~~v~AIe~~~~a~~~~~~N~~~fg--~~n~~vv~g~ 92 (187)
T COG2242 17 MTKEEIRALTLSKLRPRPGDRLWDIGAG-TGSITIEWAL-AGPSGRVIAIERDEEALELIERNAARFG--VDNLEVVEGD 92 (187)
T ss_pred CcHHHHHHHHHHhhCCCCCCEEEEeCCC-ccHHHHHHHH-hCCCceEEEEecCHHHHHHHHHHHHHhC--CCcEEEEecc
Confidence 345555443 44556899999999999 9999999996 6799999999999999999999999988 3899999999
Q ss_pred hhhhhccCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 193 ILQVKEKLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 193 ~~~~~~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+.+...++..||.||+.... .. ..+++.++.+|||||+|++..
T Consensus 93 Ap~~L~~~~~~daiFIGGg~-~i----~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 93 APEALPDLPSPDAIFIGGGG-NI----EEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred chHhhcCCCCCCEEEECCCC-CH----HHHHHHHHHHcCcCCeEEEEe
Confidence 99887776789999998873 22 789999999999999999876
No 19
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.54 E-value=1.2e-13 Score=119.27 Aligned_cols=105 Identities=20% Similarity=0.209 Sum_probs=84.4
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
..++++|||+||| .|+.+..+++...++++|+++|+++++++.|+++++..+ +..+++++.+|+.+.....+.||+|+
T Consensus 70 ~~~~~~VLDiG~G-sG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~-~~~~v~~~~~d~~~~~~~~~~fD~Ii 147 (205)
T PRK13944 70 PRPGMKILEVGTG-SGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG-YWGVVEVYHGDGKRGLEKHAPFDAII 147 (205)
T ss_pred CCCCCEEEEECcC-ccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCcEEEEECCcccCCccCCCccEEE
Confidence 4677899999999 899999988733346799999999999999999988755 44579999999976444447899999
Q ss_pred EcCcCCCCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 208 LAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
++.... .+.+++.+.|+|||++++...
T Consensus 148 ~~~~~~-------~~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 148 VTAAAS-------TIPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred EccCcc-------hhhHHHHHhcCcCcEEEEEEc
Confidence 987652 233567889999999988653
No 20
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.54 E-value=2.3e-14 Score=124.29 Aligned_cols=104 Identities=18% Similarity=0.262 Sum_probs=88.6
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.++.+||||||| .|..+..+|+ -|+.|+++|+++++++.|+..+..-+ -.+++.+.++.+....-++||+|++
T Consensus 58 l~g~~vLDvGCG-gG~Lse~mAr---~Ga~VtgiD~se~~I~~Ak~ha~e~g---v~i~y~~~~~edl~~~~~~FDvV~c 130 (243)
T COG2227 58 LPGLRVLDVGCG-GGILSEPLAR---LGASVTGIDASEKPIEVAKLHALESG---VNIDYRQATVEDLASAGGQFDVVTC 130 (243)
T ss_pred CCCCeEEEecCC-ccHhhHHHHH---CCCeeEEecCChHHHHHHHHhhhhcc---ccccchhhhHHHHHhcCCCccEEEE
Confidence 478999999999 9999999998 67999999999999999999877633 3478999999886554479999999
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.-...+. ++...+++.|.+.+||||.+++.+
T Consensus 131 mEVlEHv-~dp~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 131 MEVLEHV-PDPESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred hhHHHcc-CCHHHHHHHHHHHcCCCcEEEEec
Confidence 8765433 455779999999999999999865
No 21
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.54 E-value=9.5e-14 Score=123.74 Aligned_cols=106 Identities=16% Similarity=0.224 Sum_probs=87.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc-cCCCccEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE-KLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~-~l~~fD~V~ 207 (284)
.++.+|||+||| .|..+..+++ .+.+|+++|+|+++++.|+++.+..+ +..+++++++|+.+... ..+.||+|+
T Consensus 43 ~~~~~vLDiGcG-~G~~a~~la~---~g~~v~~vD~s~~~l~~a~~~~~~~g-~~~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 43 PRPLRVLDAGGG-EGQTAIKLAE---LGHQVILCDLSAEMIQRAKQAAEAKG-VSDNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCCEEEEeCCC-chHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHhcC-CccceEEEEcCHHHHhhhcCCCCCEEE
Confidence 567899999999 8999999998 47899999999999999999987755 55789999999987532 227899999
Q ss_pred EcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+.....+. +++..+++++.+.|||||++++..
T Consensus 118 ~~~vl~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 118 FHAVLEWV-ADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred ehhHHHhh-CCHHHHHHHHHHHcCCCeEEEEEE
Confidence 87654322 455789999999999999998653
No 22
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.53 E-value=2.5e-13 Score=106.71 Aligned_cols=105 Identities=16% Similarity=0.187 Sum_probs=85.5
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc-cCCCccEE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE-KLGEYDCI 206 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~-~l~~fD~V 206 (284)
..++++|+|+||| .|..+..+++ ..++.+|+++|+++.+++.|+++++..+ + .+++++.+|+.+... ..++||+|
T Consensus 17 ~~~~~~vldlG~G-~G~~~~~l~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~D~v 92 (124)
T TIGR02469 17 LRPGDVLWDIGAG-SGSITIEAAR-LVPNGRVYAIERNPEALRLIERNARRFG-V-SNIVIVEGDAPEALEDSLPEPDRV 92 (124)
T ss_pred CCCCCEEEEeCCC-CCHHHHHHHH-HCCCceEEEEcCCHHHHHHHHHHHHHhC-C-CceEEEeccccccChhhcCCCCEE
Confidence 3567899999999 7999999988 5677899999999999999999987754 3 478999999765322 22689999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
++.... ....++++.+.+.|+|||.+++..
T Consensus 93 ~~~~~~----~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 93 FIGGSG----GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred EECCcc----hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 987643 234689999999999999999854
No 23
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=3.6e-13 Score=121.28 Aligned_cols=139 Identities=25% Similarity=0.295 Sum_probs=101.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.++++|||+||| +|..+|..++ ++..+|+|+|+||.+++.|++|++. ++....++.-..+..+.. ..++||+|+.
T Consensus 161 ~~g~~vlDvGcG-SGILaIAa~k--LGA~~v~g~DiDp~AV~aa~eNa~~-N~v~~~~~~~~~~~~~~~-~~~~~DvIVA 235 (300)
T COG2264 161 KKGKTVLDVGCG-SGILAIAAAK--LGAKKVVGVDIDPQAVEAARENARL-NGVELLVQAKGFLLLEVP-ENGPFDVIVA 235 (300)
T ss_pred cCCCEEEEecCC-hhHHHHHHHH--cCCceEEEecCCHHHHHHHHHHHHH-cCCchhhhcccccchhhc-ccCcccEEEe
Confidence 589999999999 9999999998 5666799999999999999999887 434322223333333222 2268999998
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEeccchhhhcCCCCCCC-CCCCcEEEEEEcCCCceeeEEEEEeec
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRSAKGARAFLYPVVERH-DLLDFEVLSIFHPIDEVINSVILVRKP 282 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~~g~~~~lyp~v~~~-~l~gf~~~~~~~p~~~v~nsvi~~rk~ 282 (284)
+-+. +.-..+...+.+.+||||++++.+--.-+ ...|-.. .-.||++..+.+..+|+ ++.+||+
T Consensus 236 NILA----~vl~~La~~~~~~lkpgg~lIlSGIl~~q---~~~V~~a~~~~gf~v~~~~~~~eW~---~i~~kr~ 300 (300)
T COG2264 236 NILA----EVLVELAPDIKRLLKPGGRLILSGILEDQ---AESVAEAYEQAGFEVVEVLEREEWV---AIVGKRK 300 (300)
T ss_pred hhhH----HHHHHHHHHHHHHcCCCceEEEEeehHhH---HHHHHHHHHhCCCeEeEEEecCCEE---EEEEEcC
Confidence 8754 44578899999999999999997610000 0000011 23699999999999999 8888774
No 24
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.53 E-value=1.4e-13 Score=118.08 Aligned_cols=104 Identities=21% Similarity=0.310 Sum_probs=85.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.++.+|||+||| .|..++.+++ .+.+|+++|+|+.+++.|+++.+..+ + .+++++++|+.+...+ +.||+|++
T Consensus 29 ~~~~~vLDiGcG-~G~~a~~La~---~g~~V~gvD~S~~~i~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~-~~fD~I~~ 101 (197)
T PRK11207 29 VKPGKTLDLGCG-NGRNSLYLAA---NGFDVTAWDKNPMSIANLERIKAAEN-L-DNLHTAVVDLNNLTFD-GEYDFILS 101 (197)
T ss_pred CCCCcEEEECCC-CCHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHHHHcC-C-CcceEEecChhhCCcC-CCcCEEEE
Confidence 567899999999 8999999998 57899999999999999999887644 3 4689999998764322 67999998
Q ss_pred cCcCC-CCHHHHHHHHHHHHhccccCcEEEEE
Q 039591 209 AALVG-MSKEEKMKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 209 ~~~~~-~~~~~k~~~l~~~~~~L~pGG~lv~~ 239 (284)
....+ ..+++...+++++.++|+|||++++.
T Consensus 102 ~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 102 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred ecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 76543 34567899999999999999996543
No 25
>PRK04457 spermidine synthase; Provisional
Probab=99.53 E-value=6.2e-14 Score=125.54 Aligned_cols=147 Identities=17% Similarity=0.151 Sum_probs=103.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC-CCccEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL-GEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l-~~fD~V~ 207 (284)
.++++||+|||| .|..+..+++ ..|+.+|+++|+||++++.|++++...+ ..++++++.+|+.+..... ++||+|+
T Consensus 65 ~~~~~vL~IG~G-~G~l~~~l~~-~~p~~~v~~VEidp~vi~~A~~~f~~~~-~~~rv~v~~~Da~~~l~~~~~~yD~I~ 141 (262)
T PRK04457 65 PRPQHILQIGLG-GGSLAKFIYT-YLPDTRQTAVEINPQVIAVARNHFELPE-NGERFEVIEADGAEYIAVHRHSTDVIL 141 (262)
T ss_pred CCCCEEEEECCC-HhHHHHHHHH-hCCCCeEEEEECCHHHHHHHHHHcCCCC-CCCceEEEECCHHHHHHhCCCCCCEEE
Confidence 567899999999 9999998888 5788999999999999999999976422 3478999999998765443 6899999
Q ss_pred EcCcCCCCHH---HHHHHHHHHHhccccCcEEEEEeccchhhhcCCCCCCCCC-CCcEEEEEEcCCCceeeEEEEEee
Q 039591 208 LAALVGMSKE---EKMKIIRHIRKYMKDGGILLVRSAKGARAFLYPVVERHDL-LDFEVLSIFHPIDEVINSVILVRK 281 (284)
Q Consensus 208 ~~~~~~~~~~---~k~~~l~~~~~~L~pGG~lv~~~~~g~~~~lyp~v~~~~l-~gf~~~~~~~p~~~v~nsvi~~rk 281 (284)
+++..+.... ...++++.+.+.|+|||++++....... .++.+ ...+ .-|.-....-|...-.|.++++.|
T Consensus 142 ~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~--~~~~~-l~~l~~~F~~~~~~~~~~~~~N~v~~a~~ 216 (262)
T PRK04457 142 VDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDK--RYDRY-LERLESSFEGRVLELPAESHGNVAVFAFK 216 (262)
T ss_pred EeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCch--hHHHH-HHHHHHhcCCcEEEEecCCCccEEEEEEC
Confidence 9875422111 2379999999999999999985421111 01100 0011 235422222355555688999976
No 26
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.52 E-value=1.9e-13 Score=118.73 Aligned_cols=105 Identities=20% Similarity=0.238 Sum_probs=84.8
Q ss_pred hccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccE
Q 039591 126 NGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDC 205 (284)
Q Consensus 126 ~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~ 205 (284)
....++++||||||| +|+.+..+++...++++|+++|+++++++.|+++++..+ . .+++++++|+.+...+.+.||+
T Consensus 72 l~~~~g~~VLdIG~G-sG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-~-~~v~~~~gd~~~~~~~~~~fD~ 148 (212)
T PRK13942 72 LDLKEGMKVLEIGTG-SGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-Y-DNVEVIVGDGTLGYEENAPYDR 148 (212)
T ss_pred cCCCCcCEEEEECCc-ccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CCeEEEECCcccCCCcCCCcCE
Confidence 344788999999999 999999998833345799999999999999999998765 3 5799999998765444478999
Q ss_pred EEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|++.+... .+.+.+.+.|||||++++..
T Consensus 149 I~~~~~~~-------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 149 IYVTAAGP-------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EEECCCcc-------cchHHHHHhhCCCcEEEEEE
Confidence 99987652 33456777899999998865
No 27
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.52 E-value=1.9e-13 Score=122.43 Aligned_cols=111 Identities=12% Similarity=0.120 Sum_probs=87.7
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhc-cCCCCCeEEEEcchhhhhccCCCccEE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATD-FEFEKRMKFLTGDILQVKEKLGEYDCI 206 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~-~~l~~~v~~~~~D~~~~~~~l~~fD~V 206 (284)
..++.+|||+||| .|..+..+++...+.++|+++|+|++|++.|++..... .....+++++++|+.+.+.+.+.||+|
T Consensus 71 ~~~~~~VLDlGcG-tG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V 149 (261)
T PLN02233 71 AKMGDRVLDLCCG-SGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAI 149 (261)
T ss_pred CCCCCEEEEECCc-CCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEE
Confidence 3678899999999 89888888873235579999999999999998765311 112357999999998765444789999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
++....++. +++..+++++.++|||||++++..
T Consensus 150 ~~~~~l~~~-~d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 150 TMGYGLRNV-VDRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred EEecccccC-CCHHHHHHHHHHHcCcCcEEEEEE
Confidence 987655443 567899999999999999998765
No 28
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.51 E-value=1.8e-13 Score=122.64 Aligned_cols=110 Identities=24% Similarity=0.362 Sum_probs=88.9
Q ss_pred HhhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCc
Q 039591 124 KENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEY 203 (284)
Q Consensus 124 ~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~f 203 (284)
......++.+||||||| .|..+..+++ . .+++|+++|+++.+++.|+++... ..++.|.++|+.+...+.+.|
T Consensus 46 ~~l~l~~~~~VLDiGcG-~G~~a~~la~-~-~~~~v~giD~s~~~~~~a~~~~~~----~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 46 SDIELNENSKVLDIGSG-LGGGCKYINE-K-YGAHVHGVDICEKMVNIAKLRNSD----KNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HhCCCCCCCEEEEEcCC-CChhhHHHHh-h-cCCEEEEEECCHHHHHHHHHHcCc----CCceEEEECCcccCCCCCCCe
Confidence 33445788899999999 8888888887 2 478999999999999999998653 267999999987644334689
Q ss_pred cEEEEcC-cCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 204 DCIFLAA-LVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 204 D~V~~~~-~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+|++.. ..+....++..+++++.++|||||++++..
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999854 334444688999999999999999999865
No 29
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=3.8e-13 Score=117.52 Aligned_cols=150 Identities=19% Similarity=0.294 Sum_probs=116.3
Q ss_pred hhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCcc
Q 039591 125 ENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYD 204 (284)
Q Consensus 125 ~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD 204 (284)
..+..++++|+|.|+| +|..+..||+...+.++|+.+|+.++.++.|++|++..+ +.+++++..+|+.+...+ ..||
T Consensus 89 ~~gi~pg~rVlEAGtG-SG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~-l~d~v~~~~~Dv~~~~~~-~~vD 165 (256)
T COG2519 89 RLGISPGSRVLEAGTG-SGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG-LGDRVTLKLGDVREGIDE-EDVD 165 (256)
T ss_pred HcCCCCCCEEEEcccC-chHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc-cccceEEEeccccccccc-cccC
Confidence 3456899999999999 999999999856677999999999999999999999875 778899999999886544 4899
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEec---------cchhhhcCCCCCCCCC--CCcEEEEE-EcCCCce
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA---------KGARAFLYPVVERHDL--LDFEVLSI-FHPIDEV 272 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~---------~g~~~~lyp~v~~~~l--~gf~~~~~-~~p~~~v 272 (284)
+||++.+- .+++++++.+.|+|||.+++-.. ..++..-|-.++..++ +.|++... +.|..+.
T Consensus 166 av~LDmp~------PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~~E~l~R~~~v~~~~~RP~~~~ 239 (256)
T COG2519 166 AVFLDLPD------PWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEAVETLVRRWEVRKEATRPETRM 239 (256)
T ss_pred EEEEcCCC------hHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhhheeeeheeeecccccCccccc
Confidence 99999653 48999999999999999998763 2233332333333333 55666543 7787554
Q ss_pred eeE---EEEEeecC
Q 039591 273 INS---VILVRKPV 283 (284)
Q Consensus 273 ~ns---vi~~rk~~ 283 (284)
+-. ++|+||+.
T Consensus 240 v~HTgyivf~R~~~ 253 (256)
T COG2519 240 VGHTGYIVFARKLG 253 (256)
T ss_pred ccceeEEEEEeecc
Confidence 444 89999853
No 30
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.51 E-value=2.5e-13 Score=118.07 Aligned_cols=104 Identities=23% Similarity=0.221 Sum_probs=84.6
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEE
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCI 206 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V 206 (284)
...++.+||||||| .|..+..+++...+.++|+++|+++++++.|++++++.+ + ++++++++|+.+......+||+|
T Consensus 74 ~~~~~~~VLDiG~G-sG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-~-~~v~~~~~d~~~~~~~~~~fD~I 150 (215)
T TIGR00080 74 ELKPGMKVLEIGTG-SGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-L-DNVIVIVGDGTQGWEPLAPYDRI 150 (215)
T ss_pred CCCCcCEEEEECCC-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-C-CCeEEEECCcccCCcccCCCCEE
Confidence 44788999999999 899999999832345689999999999999999998866 4 67999999997654334689999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
++++.. ..+.+.+.+.|+|||++++..
T Consensus 151 i~~~~~-------~~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 151 YVTAAG-------PKIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred EEcCCc-------ccccHHHHHhcCcCcEEEEEE
Confidence 988754 234556788999999998754
No 31
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.51 E-value=4.3e-13 Score=118.32 Aligned_cols=108 Identities=15% Similarity=0.234 Sum_probs=88.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNH-LKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~-~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
.++.+|||+||| .|..+..++++. .++++++++|+|+.+++.|+++++..+ ...+++++++|+.+.. +..+|+|+
T Consensus 52 ~~~~~iLDlGcG-~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~-~~~~v~~~~~d~~~~~--~~~~d~v~ 127 (239)
T TIGR00740 52 TPDSNVYDLGCS-RGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-SEIPVEILCNDIRHVE--IKNASMVI 127 (239)
T ss_pred CCCCEEEEecCC-CCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECChhhCC--CCCCCEEe
Confidence 577899999999 898888888732 368999999999999999999887644 3467999999998653 35799988
Q ss_pred EcCcCC-CCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALVG-MSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~~-~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+....+ ...+++..+++++.+.|+|||.+++..
T Consensus 128 ~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 128 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred eecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 765443 345678999999999999999999875
No 32
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.51 E-value=4.1e-13 Score=116.68 Aligned_cols=108 Identities=15% Similarity=0.180 Sum_probs=84.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhcc----------CCCCCeEEEEcchhhhhc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDF----------EFEKRMKFLTGDILQVKE 198 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~----------~l~~~v~~~~~D~~~~~~ 198 (284)
.++.+||++||| .|..+++||+ .|..|+++|+|+.+++.+.+...... .-..+++++++|+.+...
T Consensus 33 ~~~~rvLd~GCG-~G~da~~LA~---~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 33 PAGARVFVPLCG-KSLDLAWLAE---QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCeEEEeCCC-chhHHHHHHh---CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 466799999999 9999999998 78999999999999998644211100 012579999999987643
Q ss_pred c-CCCccEEEEcCc-CCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 199 K-LGEYDCIFLAAL-VGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 199 ~-l~~fD~V~~~~~-~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
. .+.||.|+.... .+..++.+..+++.+.+.|||||++++.+
T Consensus 109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 3 367999998653 46677888999999999999999866554
No 33
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.3e-13 Score=117.80 Aligned_cols=119 Identities=19% Similarity=0.232 Sum_probs=94.2
Q ss_pred hhhhhHHHHHHHHhhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEc
Q 039591 112 YVKLASFECRILKENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTG 191 (284)
Q Consensus 112 y~~l~~~E~~~l~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~ 191 (284)
+.....+...++..+..+++++||||||| +|+.+..||+ -..+|+.+|++++..+.|+++++.+| + .+|.++++
T Consensus 54 tis~P~~vA~m~~~L~~~~g~~VLEIGtG-sGY~aAvla~---l~~~V~siEr~~~L~~~A~~~L~~lg-~-~nV~v~~g 127 (209)
T COG2518 54 TISAPHMVARMLQLLELKPGDRVLEIGTG-SGYQAAVLAR---LVGRVVSIERIEELAEQARRNLETLG-Y-ENVTVRHG 127 (209)
T ss_pred eecCcHHHHHHHHHhCCCCCCeEEEECCC-chHHHHHHHH---HhCeEEEEEEcHHHHHHHHHHHHHcC-C-CceEEEEC
Confidence 33333344444444456899999999999 9999999998 23499999999999999999999987 3 46999999
Q ss_pred chhhhhccCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEeccc
Q 039591 192 DILQVKEKLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSAKG 243 (284)
Q Consensus 192 D~~~~~~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~~g 243 (284)
|...-..+..+||.|++.+.. ..+-+.+.+.|++||++++--..+
T Consensus 128 DG~~G~~~~aPyD~I~Vtaaa-------~~vP~~Ll~QL~~gGrlv~PvG~~ 172 (209)
T COG2518 128 DGSKGWPEEAPYDRIIVTAAA-------PEVPEALLDQLKPGGRLVIPVGSG 172 (209)
T ss_pred CcccCCCCCCCcCEEEEeecc-------CCCCHHHHHhcccCCEEEEEEccC
Confidence 998766666899999998876 334456778899999999876533
No 34
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.50 E-value=1.3e-13 Score=126.61 Aligned_cols=106 Identities=12% Similarity=0.187 Sum_probs=87.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.++.+||||||| .|..+..+++ .+.+|+++|.++++++.|++.....+ ...+++++++|+.+.....+.||+|++
T Consensus 130 ~~g~~ILDIGCG-~G~~s~~La~---~g~~V~GID~s~~~i~~Ar~~~~~~~-~~~~i~~~~~dae~l~~~~~~FD~Vi~ 204 (322)
T PLN02396 130 FEGLKFIDIGCG-GGLLSEPLAR---MGATVTGVDAVDKNVKIARLHADMDP-VTSTIEYLCTTAEKLADEGRKFDAVLS 204 (322)
T ss_pred CCCCEEEEeeCC-CCHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHHHhcC-cccceeEEecCHHHhhhccCCCCEEEE
Confidence 456799999999 8999999987 68899999999999999998865433 346899999999876544478999998
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.....+. .+...+++++.++|||||.+++..
T Consensus 205 ~~vLeHv-~d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 205 LEVIEHV-ANPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred hhHHHhc-CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 7755332 456789999999999999999875
No 35
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.50 E-value=2.5e-13 Score=113.87 Aligned_cols=106 Identities=22% Similarity=0.333 Sum_probs=85.5
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEc
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLA 209 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~ 209 (284)
.+.+|||+||| .|..++.+++ ..+..+|+++|+|+.+++.|+++++..+ +.. ++++.+|..+... .++||+|+++
T Consensus 31 ~~~~vLDlG~G-~G~i~~~la~-~~~~~~v~~vDi~~~a~~~a~~n~~~n~-~~~-v~~~~~d~~~~~~-~~~fD~Iv~N 105 (170)
T PF05175_consen 31 KGGRVLDLGCG-SGVISLALAK-RGPDAKVTAVDINPDALELAKRNAERNG-LEN-VEVVQSDLFEALP-DGKFDLIVSN 105 (170)
T ss_dssp TTCEEEEETST-TSHHHHHHHH-TSTCEEEEEEESBHHHHHHHHHHHHHTT-CTT-EEEEESSTTTTCC-TTCEEEEEE-
T ss_pred cCCeEEEecCC-hHHHHHHHHH-hCCCCEEEEEcCCHHHHHHHHHHHHhcC-ccc-ccccccccccccc-ccceeEEEEc
Confidence 67899999999 9999999998 6777789999999999999999998854 444 9999999986443 4789999999
Q ss_pred CcCCCCH----HHHHHHHHHHHhccccCcEEEEEe
Q 039591 210 ALVGMSK----EEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 210 ~~~~~~~----~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.+..... .-..++++++.++|+|||.+++..
T Consensus 106 PP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 106 PPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp --SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 8763222 245889999999999999985543
No 36
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.50 E-value=2.7e-13 Score=121.76 Aligned_cols=108 Identities=17% Similarity=0.223 Sum_probs=88.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.++++|||+||| .|..++.+++...+..+|+++|+++.+++.|+++....+ . .+++|+.+|+.+.....+.||+|++
T Consensus 76 ~~g~~VLDiG~G-~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-~-~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 76 KPGETVLDLGSG-GGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-Y-TNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred CCCCEEEEeCCC-CCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-C-CCEEEEEcchhhCCCCCCceeEEEE
Confidence 678999999999 698888777733455689999999999999999987755 3 5899999999875433368999998
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+...++. .++.++++++.+.|||||++++.+
T Consensus 153 ~~v~~~~-~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 153 NCVINLS-PDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cCcccCC-CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 8655433 566889999999999999999864
No 37
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.50 E-value=1.8e-13 Score=106.92 Aligned_cols=106 Identities=22% Similarity=0.324 Sum_probs=85.4
Q ss_pred CCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc--cCCCccEEEE
Q 039591 131 PKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE--KLGEYDCIFL 208 (284)
Q Consensus 131 ~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~--~l~~fD~V~~ 208 (284)
|.+|||+||| .|..++.+++ .. ..+++++|+||.+++.|++++...+ +.++++++++|+.+... ..++||+|+.
T Consensus 1 g~~vlD~~~G-~G~~~~~~~~-~~-~~~~~gvdi~~~~~~~a~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCG-SGTFLLAALR-RG-AARVTGVDIDPEAVELARRNLPRNG-LDDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETST-TCHHHHHHHH-HC-TCEEEEEESSHHHHHHHHHHCHHCT-TTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CCEEEEcCcc-hHHHHHHHHH-HC-CCeEEEEEECHHHHHHHHHHHHHcc-CCceEEEEECchhhchhhccCceeEEEEE
Confidence 4689999999 9999999888 33 6899999999999999999998855 56789999999998762 3388999999
Q ss_pred cCcCCCCH-------HHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGMSK-------EEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~-------~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+.+.+... ..-..+++++.+.|+|||.+++..
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 98764221 123688999999999999998754
No 38
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.49 E-value=6.9e-13 Score=113.85 Aligned_cols=110 Identities=17% Similarity=0.215 Sum_probs=89.0
Q ss_pred hhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC-CCc
Q 039591 125 ENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL-GEY 203 (284)
Q Consensus 125 ~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l-~~f 203 (284)
+....++.+|||+||| .|..++.+++...++.+|+++|+++.+++.|+++++..+ +.++++++++|+.+....+ +.|
T Consensus 35 ~l~~~~~~~vlDlG~G-tG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g-~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 35 KLRLRKGDMILDIGCG-TGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG-VLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred HcCCCCcCEEEEeCCc-CCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC-CCCCeEEEEechhhhHhhcCCCC
Confidence 3445788999999999 799988888733456799999999999999999988755 4478999999998754444 689
Q ss_pred cEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 204 DCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 204 D~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|.||+.... .+...+++.+.+.|+|||++++..
T Consensus 113 D~V~~~~~~----~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 113 DRIFIGGGS----EKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CEEEECCCc----ccHHHHHHHHHHHcCCCcEEEEEe
Confidence 999986533 334789999999999999999754
No 39
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.49 E-value=5.4e-13 Score=114.26 Aligned_cols=104 Identities=16% Similarity=0.185 Sum_probs=84.9
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC-CCccEE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL-GEYDCI 206 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l-~~fD~V 206 (284)
..++.+|||+||| .|..++.+++ ..++.+|+++|+|+++++.|++++++.+ + .+++++++|+.+....+ ..+|.+
T Consensus 38 ~~~~~~VLDiG~G-~G~~~~~la~-~~~~~~V~~vD~s~~~~~~a~~n~~~~~-~-~~v~~~~~d~~~~~~~~~~~~d~v 113 (196)
T PRK07402 38 LEPDSVLWDIGAG-TGTIPVEAGL-LCPKGRVIAIERDEEVVNLIRRNCDRFG-V-KNVEVIEGSAPECLAQLAPAPDRV 113 (196)
T ss_pred CCCCCEEEEeCCC-CCHHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CCeEEEECchHHHHhhCCCCCCEE
Confidence 3677899999999 8999998887 4577899999999999999999998765 3 57999999987643333 457888
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+++... +...+++++.+.|+|||++++..
T Consensus 114 ~~~~~~-----~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 114 CIEGGR-----PIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred EEECCc-----CHHHHHHHHHHhcCCCeEEEEEe
Confidence 776432 23688999999999999999876
No 40
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.48 E-value=1.3e-12 Score=118.40 Aligned_cols=104 Identities=21% Similarity=0.279 Sum_probs=84.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.++.+|||+||| .|..++.+++ .|.+|+++|+|+.+++.++++++..+ + ++++...|+.+... .+.||+|++
T Consensus 119 ~~~~~vLDlGcG-~G~~~~~la~---~g~~V~avD~s~~ai~~~~~~~~~~~-l--~v~~~~~D~~~~~~-~~~fD~I~~ 190 (287)
T PRK12335 119 VKPGKALDLGCG-QGRNSLYLAL---LGFDVTAVDINQQSLENLQEIAEKEN-L--NIRTGLYDINSASI-QEEYDFILS 190 (287)
T ss_pred cCCCCEEEeCCC-CCHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEechhcccc-cCCccEEEE
Confidence 356699999999 9999999998 57899999999999999999987644 3 68888888865322 268999998
Q ss_pred cCcC-CCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALV-GMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~-~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.... ...+++...+++++.++|+|||++++..
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 7643 3345678899999999999999966543
No 41
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.48 E-value=3.5e-13 Score=121.23 Aligned_cols=110 Identities=20% Similarity=0.328 Sum_probs=83.9
Q ss_pred HhhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCc
Q 039591 124 KENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEY 203 (284)
Q Consensus 124 ~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~f 203 (284)
.+...++|++||||||| -|-.++.+|++ .|++|+++++|++..+.|++.++..| +.+++++..+|..+.. .+|
T Consensus 56 ~~~~l~~G~~vLDiGcG-wG~~~~~~a~~--~g~~v~gitlS~~Q~~~a~~~~~~~g-l~~~v~v~~~D~~~~~---~~f 128 (273)
T PF02353_consen 56 EKLGLKPGDRVLDIGCG-WGGLAIYAAER--YGCHVTGITLSEEQAEYARERIREAG-LEDRVEVRLQDYRDLP---GKF 128 (273)
T ss_dssp TTTT--TT-EEEEES-T-TSHHHHHHHHH--H--EEEEEES-HHHHHHHHHHHHCST-SSSTEEEEES-GGG------S-
T ss_pred HHhCCCCCCEEEEeCCC-ccHHHHHHHHH--cCcEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEeeccccC---CCC
Confidence 34455899999999999 99999999983 38999999999999999999998866 7889999999987643 389
Q ss_pred cEEEEcCcC-CCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 204 DCIFLAALV-GMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 204 D~V~~~~~~-~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|.|++-... ++..++...+++++.+.|+|||++++..
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 999986543 4444667899999999999999998754
No 42
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.47 E-value=7.7e-13 Score=113.40 Aligned_cols=103 Identities=19% Similarity=0.243 Sum_probs=82.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.++.+|||+||| .|..++.+++ .+.+|+++|+|+.+++.++++.+..+ + .+++..+|+.....+ +.||+|++
T Consensus 29 ~~~~~vLDiGcG-~G~~a~~la~---~g~~V~~iD~s~~~l~~a~~~~~~~~-~--~v~~~~~d~~~~~~~-~~fD~I~~ 100 (195)
T TIGR00477 29 VAPCKTLDLGCG-QGRNSLYLSL---AGYDVRAWDHNPASIASVLDMKAREN-L--PLRTDAYDINAAALN-EDYDFIFS 100 (195)
T ss_pred CCCCcEEEeCCC-CCHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHHHhC-C--CceeEeccchhcccc-CCCCEEEE
Confidence 457899999999 9999999998 57899999999999999999876644 3 377888887543222 57999998
Q ss_pred cCcCC-CCHHHHHHHHHHHHhccccCcEEEEE
Q 039591 209 AALVG-MSKEEKMKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 209 ~~~~~-~~~~~k~~~l~~~~~~L~pGG~lv~~ 239 (284)
....+ ...++...+++.+.++|+|||++++.
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 101 TVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred ecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 76443 34467789999999999999986554
No 43
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.47 E-value=8.8e-13 Score=115.28 Aligned_cols=109 Identities=20% Similarity=0.230 Sum_probs=86.6
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLK-ATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCI 206 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~-~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V 206 (284)
..++.+|||+||| .|..+..+++ ..+ ..+++++|+++.+++.+++++...+ +..+++++.+|+.+.....+.||+|
T Consensus 49 ~~~~~~vldiG~G-~G~~~~~l~~-~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D~I 125 (239)
T PRK00216 49 VRPGDKVLDLACG-TGDLAIALAK-AVGKTGEVVGLDFSEGMLAVGREKLRDLG-LSGNVEFVQGDAEALPFPDNSFDAV 125 (239)
T ss_pred CCCCCeEEEeCCC-CCHHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHHhhcccc-cccCeEEEecccccCCCCCCCccEE
Confidence 3567899999999 6888888887 344 5899999999999999999876533 3467999999998754334689999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
++....+.. .+...+++.+.+.|+|||++++..
T Consensus 126 ~~~~~l~~~-~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 126 TIAFGLRNV-PDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred EEecccccC-CCHHHHHHHHHHhccCCcEEEEEE
Confidence 987654333 456789999999999999988754
No 44
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.47 E-value=2.4e-13 Score=103.91 Aligned_cols=97 Identities=20% Similarity=0.338 Sum_probs=77.4
Q ss_pred EEEecCCCChHHHHHHHhhc--CCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcC-
Q 039591 134 VAFVGSGPMPLTSIVMAKNH--LKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAA- 210 (284)
Q Consensus 134 VL~iGsGp~G~~ai~la~~~--~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~- 210 (284)
|||+||| .|..+..+++.. .+..+++++|+|+++++.+++.....+ .+++|+++|+.+.....++||+|++..
T Consensus 1 ILDlgcG-~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~---~~~~~~~~D~~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCG-TGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG---PKVRFVQADARDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-T-TSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT---TTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred CEEeecC-CcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC---CceEEEECCHhHCcccCCCeeEEEEcCC
Confidence 7999999 899999888732 134799999999999999999987644 389999999988665557999999943
Q ss_pred -cCCCCHHHHHHHHHHHHhccccCc
Q 039591 211 -LVGMSKEEKMKIIRHIRKYMKDGG 234 (284)
Q Consensus 211 -~~~~~~~~k~~~l~~~~~~L~pGG 234 (284)
..+.++++...+++++.++|||||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 345677888999999999999998
No 45
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.47 E-value=8.7e-13 Score=112.10 Aligned_cols=103 Identities=18% Similarity=0.188 Sum_probs=84.7
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
..++.+|||+||| .|..++.+++ ..++.+|+++|+|+.+++.|+++++..+ + .+++++++|+.... .+.||+|+
T Consensus 29 ~~~~~~vLDiG~G-~G~~~~~la~-~~~~~~v~~vD~s~~~~~~a~~n~~~~~-~-~~i~~~~~d~~~~~--~~~~D~v~ 102 (187)
T PRK08287 29 LHRAKHLIDVGAG-TGSVSIEAAL-QFPSLQVTAIERNPDALRLIKENRQRFG-C-GNIDIIPGEAPIEL--PGKADAIF 102 (187)
T ss_pred CCCCCEEEEECCc-CCHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHhC-C-CCeEEEecCchhhc--CcCCCEEE
Confidence 3678899999999 8999999988 5678899999999999999999988755 3 47999999975321 26799999
Q ss_pred EcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
++...+. ...+++.+.+.|+|||++++..
T Consensus 103 ~~~~~~~----~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 103 IGGSGGN----LTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred ECCCccC----HHHHHHHHHHhcCCCeEEEEEE
Confidence 8765432 2578999999999999998754
No 46
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.46 E-value=4.9e-12 Score=114.59 Aligned_cols=110 Identities=18% Similarity=0.222 Sum_probs=87.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.++.+|||+||| .|..++.+++ ..++.+|+++|+|+.+++.|+++++..+ +.++++|+++|+.+.. ..+.||+|++
T Consensus 120 ~~~~~vLDlG~G-sG~i~~~la~-~~~~~~v~avDis~~al~~A~~n~~~~~-~~~~i~~~~~D~~~~~-~~~~fD~Iv~ 195 (284)
T TIGR03533 120 EPVKRILDLCTG-SGCIAIACAY-AFPEAEVDAVDISPDALAVAEINIERHG-LEDRVTLIQSDLFAAL-PGRKYDLIVS 195 (284)
T ss_pred CCCCEEEEEeCc-hhHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECchhhcc-CCCCccEEEE
Confidence 456799999999 8999999998 5678899999999999999999998755 5578999999987533 2247999999
Q ss_pred cCcCCCC-------H-----------------HHHHHHHHHHHhccccCcEEEEEecc
Q 039591 209 AALVGMS-------K-----------------EEKMKIIRHIRKYMKDGGILLVRSAK 242 (284)
Q Consensus 209 ~~~~~~~-------~-----------------~~k~~~l~~~~~~L~pGG~lv~~~~~ 242 (284)
+.+.... . +.-..+++.+.++|+|||++++...+
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 8643110 0 11257889999999999999987743
No 47
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.46 E-value=4e-13 Score=116.26 Aligned_cols=111 Identities=20% Similarity=0.211 Sum_probs=84.7
Q ss_pred HHHHhhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC
Q 039591 121 RILKENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL 200 (284)
Q Consensus 121 ~~l~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l 200 (284)
..+..+..+++++||||||| +|+.+..+++...+.++|+++|+++..++.|+++++.++ . .+++++++|......+.
T Consensus 63 ~~l~~L~l~pg~~VLeIGtG-sGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~-~-~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 63 RMLEALDLKPGDRVLEIGTG-SGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG-I-DNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHTTC-TT-EEEEES-T-TSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT-T-HSEEEEES-GGGTTGGG
T ss_pred HHHHHHhcCCCCEEEEecCC-CcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc-c-CceeEEEcchhhccccC
Confidence 33444446899999999999 999999999844456789999999999999999999876 2 58999999998755555
Q ss_pred CCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 201 GEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 201 ~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
++||.|++.+.+. ++-..+.+.|++||++++--.
T Consensus 140 apfD~I~v~~a~~-------~ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 140 APFDRIIVTAAVP-------EIPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp -SEEEEEESSBBS-------S--HHHHHTEEEEEEEEEEES
T ss_pred CCcCEEEEeeccc-------hHHHHHHHhcCCCcEEEEEEc
Confidence 8899999988762 334557778999999998653
No 48
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.46 E-value=4.9e-13 Score=119.14 Aligned_cols=104 Identities=17% Similarity=0.207 Sum_probs=85.1
Q ss_pred HHhhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCC
Q 039591 123 LKENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGE 202 (284)
Q Consensus 123 l~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~ 202 (284)
+......++.+||||||| .|..+..+++ ..++.+|+++|+|+.+++.|++. +++++++|+.+.. ..+.
T Consensus 22 l~~l~~~~~~~vLDlGcG-~G~~~~~l~~-~~p~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~-~~~~ 89 (255)
T PRK14103 22 LARVGAERARRVVDLGCG-PGNLTRYLAR-RWPGAVIEALDSSPEMVAAARER---------GVDARTGDVRDWK-PKPD 89 (255)
T ss_pred HHhCCCCCCCEEEEEcCC-CCHHHHHHHH-HCCCCEEEEEECCHHHHHHHHhc---------CCcEEEcChhhCC-CCCC
Confidence 333344678999999999 8999999988 45788999999999999999752 3678999997653 3378
Q ss_pred ccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEE
Q 039591 203 YDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 203 fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~ 239 (284)
||+|++....++. .++..+++++.+.|||||.+++.
T Consensus 90 fD~v~~~~~l~~~-~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 90 TDVVVSNAALQWV-PEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred ceEEEEehhhhhC-CCHHHHHHHHHHhCCCCcEEEEE
Confidence 9999998766544 46688999999999999999885
No 49
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.45 E-value=3e-12 Score=113.86 Aligned_cols=131 Identities=24% Similarity=0.298 Sum_probs=93.5
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.++.+|||+||| .|..++.+++ ....+|+++|+|+.+++.|+++++..+ +..++.+..+|. .||+|+.
T Consensus 118 ~~~~~VLDiGcG-sG~l~i~~~~--~g~~~v~giDis~~~l~~A~~n~~~~~-~~~~~~~~~~~~--------~fD~Vva 185 (250)
T PRK00517 118 LPGKTVLDVGCG-SGILAIAAAK--LGAKKVLAVDIDPQAVEAARENAELNG-VELNVYLPQGDL--------KADVIVA 185 (250)
T ss_pred CCCCEEEEeCCc-HHHHHHHHHH--cCCCeEEEEECCHHHHHHHHHHHHHcC-CCceEEEccCCC--------CcCEEEE
Confidence 578999999999 7999988776 334469999999999999999987643 444455444332 6999998
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEecc--chhhhcCCCCCCCCCCCcEEEEEEcCCCceeeEEEEEeec
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRSAK--GARAFLYPVVERHDLLDFEVLSIFHPIDEVINSVILVRKP 282 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~~--g~~~~lyp~v~~~~l~gf~~~~~~~p~~~v~nsvi~~rk~ 282 (284)
+... .....+++++.+.|||||++++.+.. ....+. ....-.||+++...+-.+|+ .++++|+
T Consensus 186 ni~~----~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~----~~l~~~Gf~~~~~~~~~~W~---~~~~~~~ 250 (250)
T PRK00517 186 NILA----NPLLELAPDLARLLKPGGRLILSGILEEQADEVL----EAYEEAGFTLDEVLERGEWV---ALVGKKK 250 (250)
T ss_pred cCcH----HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHH----HHHHHCCCEEEEEEEeCCEE---EEEEEeC
Confidence 7543 34467899999999999999986521 110000 00012689998887777777 5666664
No 50
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.45 E-value=1e-12 Score=115.49 Aligned_cols=109 Identities=22% Similarity=0.312 Sum_probs=91.1
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCccEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEYDCI 206 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~fD~V 206 (284)
....+|||+||| .|..++.+|+ ..+.++|++||++++++++|+++++. +.+.++|+++++|+.++.... ..||+|
T Consensus 43 ~~~~~IlDlGaG-~G~l~L~la~-r~~~a~I~~VEiq~~~a~~A~~nv~l-n~l~~ri~v~~~Di~~~~~~~~~~~fD~I 119 (248)
T COG4123 43 PKKGRILDLGAG-NGALGLLLAQ-RTEKAKIVGVEIQEEAAEMAQRNVAL-NPLEERIQVIEADIKEFLKALVFASFDLI 119 (248)
T ss_pred ccCCeEEEecCC-cCHHHHHHhc-cCCCCcEEEEEeCHHHHHHHHHHHHh-CcchhceeEehhhHHHhhhcccccccCEE
Confidence 447899999999 9999999998 44669999999999999999999987 558899999999999876544 569999
Q ss_pred EEcCcCCCCH------H-----------HHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSK------E-----------EKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~------~-----------~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+++.+..... + +-+++++.+.+.|||||.+.+..
T Consensus 120 i~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 120 ICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred EeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 9997652110 1 13889999999999999998765
No 51
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.44 E-value=2.4e-12 Score=112.19 Aligned_cols=106 Identities=13% Similarity=0.172 Sum_probs=83.2
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhc------c----CCCCCeEEEEcchhhhhc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATD------F----EFEKRMKFLTGDILQVKE 198 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~------~----~l~~~v~~~~~D~~~~~~ 198 (284)
.++.+||++||| .|..+++||+ .|.+|+|+|+|+.+++.+.+..... + ..+.+|++.++|+.+...
T Consensus 36 ~~~~rvL~~gCG-~G~da~~LA~---~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 36 PAGSRVLVPLCG-KSLDMLWLAE---QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCeEEEeCCC-ChHhHHHHHh---CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence 456799999999 9999999998 7899999999999999875321100 0 013679999999987643
Q ss_pred c-CCCccEEEEcCc-CCCCHHHHHHHHHHHHhccccCcEEEE
Q 039591 199 K-LGEYDCIFLAAL-VGMSKEEKMKIIRHIRKYMKDGGILLV 238 (284)
Q Consensus 199 ~-l~~fD~V~~~~~-~~~~~~~k~~~l~~~~~~L~pGG~lv~ 238 (284)
. .+.||.|+..+. ....++.+.++++.+.+.|+|||++++
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 3 368999997653 355678899999999999999986444
No 52
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.44 E-value=4.6e-12 Score=119.11 Aligned_cols=108 Identities=19% Similarity=0.199 Sum_probs=84.6
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc-cCCCccEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE-KLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~-~l~~fD~V~ 207 (284)
.++.+|||+||| +|..++.+++ ..++.+|+++|+|+++++.|+++++..+ .+++|+++|+.+... ..++||+|+
T Consensus 250 ~~~~rVLDLGcG-SG~IaiaLA~-~~p~a~VtAVDiS~~ALe~AreNa~~~g---~rV~fi~gDl~e~~l~~~~~FDLIV 324 (423)
T PRK14966 250 PENGRVWDLGTG-SGAVAVTVAL-ERPDAFVRASDISPPALETARKNAADLG---ARVEFAHGSWFDTDMPSEGKWDIIV 324 (423)
T ss_pred CCCCEEEEEeCh-hhHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC---CcEEEEEcchhccccccCCCccEEE
Confidence 456799999999 8999999887 4688999999999999999999988754 489999999875322 125799999
Q ss_pred EcCcCCCCH------H------------------HHHHHHHHHHhccccCcEEEEEec
Q 039591 208 LAALVGMSK------E------------------EKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 208 ~~~~~~~~~------~------------------~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
++.+..... + --.++++++.++|+|||.+++...
T Consensus 325 SNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 325 SNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred ECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 987641110 0 114677888899999999988664
No 53
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.43 E-value=1.4e-11 Score=119.89 Aligned_cols=135 Identities=14% Similarity=0.176 Sum_probs=96.2
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEc
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLA 209 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~ 209 (284)
++.+|||+||| +|..++.+++ ..++.+|+++|+|+.+++.|+++++..+ +.++++++++|+.+.. ..++||+|+++
T Consensus 138 ~~~~VLDlG~G-sG~iai~la~-~~p~~~v~avDis~~al~~A~~N~~~~~-l~~~v~~~~~D~~~~~-~~~~fDlIvsN 213 (506)
T PRK01544 138 KFLNILELGTG-SGCIAISLLC-ELPNANVIATDISLDAIEVAKSNAIKYE-VTDRIQIIHSNWFENI-EKQKFDFIVSN 213 (506)
T ss_pred CCCEEEEccCc-hhHHHHHHHH-HCCCCeEEEEECCHHHHHHHHHHHHHcC-CccceeeeecchhhhC-cCCCccEEEEC
Confidence 34689999999 9999999987 5688999999999999999999988755 5678999999987532 22579999997
Q ss_pred CcCCCCH-------------------------HHHHHHHHHHHhccccCcEEEEEeccch----hhh----cCCCCCC-C
Q 039591 210 ALVGMSK-------------------------EEKMKIIRHIRKYMKDGGILLVRSAKGA----RAF----LYPVVER-H 255 (284)
Q Consensus 210 ~~~~~~~-------------------------~~k~~~l~~~~~~L~pGG~lv~~~~~g~----~~~----lyp~v~~-~ 255 (284)
.+..... +.-..+++++.++|+|||.+++..+... ... .|..+.. .
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~~~~ 293 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIESVYK 293 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceEEEe
Confidence 6431110 0114567888899999999998764221 111 1222222 3
Q ss_pred CCCCcEEEEEEcC
Q 039591 256 DLLDFEVLSIFHP 268 (284)
Q Consensus 256 ~l~gf~~~~~~~p 268 (284)
|+.|.+.+....+
T Consensus 294 D~~g~~R~v~~~~ 306 (506)
T PRK01544 294 DLQGHSRVILISP 306 (506)
T ss_pred cCCCCceEEEecc
Confidence 6777776655444
No 54
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.43 E-value=1.4e-12 Score=116.08 Aligned_cols=103 Identities=19% Similarity=0.291 Sum_probs=85.2
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEE
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCI 206 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V 206 (284)
...++.+||||||| .|..+..+++ ..++.+|+++|+|+.+++.|+++. .+++|+.+|+.+.. ...+||+|
T Consensus 28 ~~~~~~~vLDiGcG-~G~~~~~la~-~~~~~~v~gvD~s~~~i~~a~~~~-------~~~~~~~~d~~~~~-~~~~fD~v 97 (258)
T PRK01683 28 PLENPRYVVDLGCG-PGNSTELLVE-RWPAARITGIDSSPAMLAEARSRL-------PDCQFVEADIASWQ-PPQALDLI 97 (258)
T ss_pred CCcCCCEEEEEccc-CCHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHhC-------CCCeEEECchhccC-CCCCccEE
Confidence 34678899999999 8988989988 467889999999999999999863 35789999987643 23689999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+++...++. .++..+++++.+.|+|||.+++..
T Consensus 98 ~~~~~l~~~-~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 98 FANASLQWL-PDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred EEccChhhC-CCHHHHHHHHHHhcCCCcEEEEEC
Confidence 998766443 466789999999999999998864
No 55
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.42 E-value=9.6e-13 Score=114.68 Aligned_cols=104 Identities=21% Similarity=0.321 Sum_probs=85.9
Q ss_pred CeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcCc
Q 039591 132 KKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAAL 211 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~~ 211 (284)
++||||||| .|..+..+++ ..++.+|+++|+|+++++.|+++++..+ +..+++++.+|+.+... .+.||+|++...
T Consensus 1 ~~vLDiGcG-~G~~~~~la~-~~~~~~v~gid~s~~~~~~a~~~~~~~g-l~~~i~~~~~d~~~~~~-~~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCG-YGSDLIDLAE-RHPHLQLHGYTISPEQAEVGRERIRALG-LQGRIRIFYRDSAKDPF-PDTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCC-CCHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHhcC-CCcceEEEecccccCCC-CCCCCEeehHHH
Confidence 479999999 8888888888 5677899999999999999999987755 67889999999865422 268999997654
Q ss_pred CCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 212 VGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 212 ~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
..+. .++..+++++.+.|+|||.+++..
T Consensus 77 l~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 77 IHHI-KDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HHhC-CCHHHHHHHHHHHcCCCCEEEEEE
Confidence 4332 456899999999999999999865
No 56
>PRK04266 fibrillarin; Provisional
Probab=99.42 E-value=3.2e-12 Score=112.05 Aligned_cols=146 Identities=15% Similarity=0.190 Sum_probs=98.6
Q ss_pred hccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh--ccC-CC
Q 039591 126 NGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK--EKL-GE 202 (284)
Q Consensus 126 ~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~--~~l-~~ 202 (284)
....++.+|||+||| .|..+..+++ ..++++|+++|++++|++.+.++++.. .++.++.+|+.+.. ..+ +.
T Consensus 68 l~i~~g~~VlD~G~G-~G~~~~~la~-~v~~g~V~avD~~~~ml~~l~~~a~~~----~nv~~i~~D~~~~~~~~~l~~~ 141 (226)
T PRK04266 68 FPIKKGSKVLYLGAA-SGTTVSHVSD-IVEEGVVYAVEFAPRPMRELLEVAEER----KNIIPILADARKPERYAHVVEK 141 (226)
T ss_pred CCCCCCCEEEEEccC-CCHHHHHHHH-hcCCCeEEEEECCHHHHHHHHHHhhhc----CCcEEEECCCCCcchhhhcccc
Confidence 344788999999999 7888888988 444679999999999999888776542 56899999986421 112 56
Q ss_pred ccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe-ccc-----hhhhcCCCCCCCCC--CCcEEEEEEcCCCceee
Q 039591 203 YDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS-AKG-----ARAFLYPVVERHDL--LDFEVLSIFHPIDEVIN 274 (284)
Q Consensus 203 fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~-~~g-----~~~~lyp~v~~~~l--~gf~~~~~~~p~~~v~n 274 (284)
||+|+.+... +.....+++++.+.|||||.+++.- +.. ...-.|... ...+ .||+++......+..-|
T Consensus 142 ~D~i~~d~~~---p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~-~~~l~~aGF~~i~~~~l~p~~~~ 217 (226)
T PRK04266 142 VDVIYQDVAQ---PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEE-IRKLEEGGFEILEVVDLEPYHKD 217 (226)
T ss_pred CCEEEECCCC---hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHH-HHHHHHcCCeEEEEEcCCCCcCC
Confidence 9999976432 2233456899999999999999832 110 000111100 1122 59999988765544334
Q ss_pred E-EEEEee
Q 039591 275 S-VILVRK 281 (284)
Q Consensus 275 s-vi~~rk 281 (284)
. .+++|+
T Consensus 218 h~~~v~~~ 225 (226)
T PRK04266 218 HAAVVARK 225 (226)
T ss_pred eEEEEEEc
Confidence 4 566654
No 57
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.41 E-value=2.5e-13 Score=118.80 Aligned_cols=102 Identities=19% Similarity=0.312 Sum_probs=84.2
Q ss_pred CCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCC----CeEEEEcchhhhhccCCCccEE
Q 039591 131 PKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEK----RMKFLTGDILQVKEKLGEYDCI 206 (284)
Q Consensus 131 ~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~----~v~~~~~D~~~~~~~l~~fD~V 206 (284)
+++|||+||| +|+.+..||+ .|++|+|+|.++++++.|++....++.+.. +++|.+.|+.+.. +.||.|
T Consensus 90 g~~ilDvGCG-gGLLSepLAr---lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCG-GGLLSEPLAR---LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAV 162 (282)
T ss_pred CceEEEeccC-ccccchhhHh---hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---ccccee
Confidence 4789999999 9999999998 689999999999999999999544443333 4778888877533 569999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
++.-.+.+. .+++++++.+.++|||||.+++.+
T Consensus 163 vcsevleHV-~dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 163 VCSEVLEHV-KDPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred eeHHHHHHH-hCHHHHHHHHHHHhCCCCceEeee
Confidence 987655333 677999999999999999999876
No 58
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.41 E-value=1.6e-11 Score=112.39 Aligned_cols=109 Identities=18% Similarity=0.238 Sum_probs=87.0
Q ss_pred CCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcC
Q 039591 131 PKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAA 210 (284)
Q Consensus 131 ~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~ 210 (284)
+.+|||+||| .|..++.+++ ..++.+|+++|+|+.+++.|+++++..+ +..+++++++|+.+... -++||+|+++.
T Consensus 134 ~~~VLDlG~G-sG~iai~la~-~~p~~~V~avDis~~al~~A~~n~~~~~-l~~~i~~~~~D~~~~l~-~~~fDlIvsNP 209 (307)
T PRK11805 134 VTRILDLCTG-SGCIAIACAY-AFPDAEVDAVDISPDALAVAEINIERHG-LEDRVTLIESDLFAALP-GRRYDLIVSNP 209 (307)
T ss_pred CCEEEEEech-hhHHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHhC-CCCcEEEEECchhhhCC-CCCccEEEECC
Confidence 3799999999 9999999998 5678999999999999999999998755 55689999999876432 25799999986
Q ss_pred cCCC-------C-----------------HHHHHHHHHHHHhccccCcEEEEEeccc
Q 039591 211 LVGM-------S-----------------KEEKMKIIRHIRKYMKDGGILLVRSAKG 243 (284)
Q Consensus 211 ~~~~-------~-----------------~~~k~~~l~~~~~~L~pGG~lv~~~~~g 243 (284)
+... . .+.-..+++.+.++|+|||++++...+.
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~ 266 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS 266 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence 4310 0 0112578899999999999999976543
No 59
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.41 E-value=2e-12 Score=125.02 Aligned_cols=106 Identities=20% Similarity=0.238 Sum_probs=87.0
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
..++.+||||||| .|..++.+++ . .+++|+++|+|+.+++.|+++... ...+++|.++|+.+...+.+.||+|+
T Consensus 264 ~~~~~~vLDiGcG-~G~~~~~la~-~-~~~~v~gvDiS~~~l~~A~~~~~~---~~~~v~~~~~d~~~~~~~~~~fD~I~ 337 (475)
T PLN02336 264 LKPGQKVLDVGCG-IGGGDFYMAE-N-FDVHVVGIDLSVNMISFALERAIG---RKCSVEFEVADCTKKTYPDNSFDVIY 337 (475)
T ss_pred CCCCCEEEEEecc-CCHHHHHHHH-h-cCCEEEEEECCHHHHHHHHHHhhc---CCCceEEEEcCcccCCCCCCCEEEEE
Confidence 3667899999999 8988898987 3 478999999999999999988653 34689999999876543336799999
Q ss_pred EcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+.....+. .++..+++++.+.|||||.+++..
T Consensus 338 s~~~l~h~-~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 338 SRDTILHI-QDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred ECCccccc-CCHHHHHHHHHHHcCCCeEEEEEE
Confidence 87655333 567899999999999999999865
No 60
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.41 E-value=2.3e-12 Score=115.20 Aligned_cols=110 Identities=17% Similarity=0.227 Sum_probs=92.6
Q ss_pred HhhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCc
Q 039591 124 KENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEY 203 (284)
Q Consensus 124 ~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~f 203 (284)
..+..++|++||||||| -|.+++.+|+ . .|++|+|+++|+++.+.+++.+++.| +..++++...|..++. +.|
T Consensus 66 ~kl~L~~G~~lLDiGCG-WG~l~~~aA~-~-y~v~V~GvTlS~~Q~~~~~~r~~~~g-l~~~v~v~l~d~rd~~---e~f 138 (283)
T COG2230 66 EKLGLKPGMTLLDIGCG-WGGLAIYAAE-E-YGVTVVGVTLSEEQLAYAEKRIAARG-LEDNVEVRLQDYRDFE---EPF 138 (283)
T ss_pred HhcCCCCCCEEEEeCCC-hhHHHHHHHH-H-cCCEEEEeeCCHHHHHHHHHHHHHcC-CCcccEEEeccccccc---ccc
Confidence 33455999999999999 9999999998 3 48999999999999999999988866 7779999999987653 459
Q ss_pred cEEEEcCcC-CCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 204 DCIFLAALV-GMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 204 D~V~~~~~~-~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|.|++.... +...+.-..+|+.+.+.|+|||++++.+
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 999987643 2223445899999999999999999876
No 61
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.40 E-value=3.7e-12 Score=109.79 Aligned_cols=108 Identities=18% Similarity=0.165 Sum_probs=85.1
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcch-hhhh--ccCCCccE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDI-LQVK--EKLGEYDC 205 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~-~~~~--~~l~~fD~ 205 (284)
.++.+|||+||| .|..+..+++ ..++.+|+++|+|+.+++.|+++.+..+ + .+++++++|+ .... .+.+.||+
T Consensus 39 ~~~~~VLDiGcG-tG~~~~~la~-~~p~~~v~gVD~s~~~i~~a~~~~~~~~-~-~~v~~~~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 39 NDAPIHLEIGFG-KGEFLVEMAK-ANPDINFIGIEVHEPGVGKALKKIEEEG-L-TNLRLLCGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCCeEEEEccC-CCHHHHHHHH-HCCCccEEEEEechHHHHHHHHHHHHcC-C-CCEEEEecCHHHHHHHHcCccccce
Confidence 467899999999 8999998887 5678899999999999999999987644 3 6799999999 5433 22367999
Q ss_pred EEEcCcCCCCH-------HHHHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALVGMSK-------EEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~~~-------~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|++.....+.. .....+++++.+.|+|||.+++..
T Consensus 115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 99864321110 113689999999999999999875
No 62
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.40 E-value=2.5e-12 Score=110.12 Aligned_cols=108 Identities=19% Similarity=0.228 Sum_probs=86.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc---CCCccE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK---LGEYDC 205 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~---l~~fD~ 205 (284)
....+||||||| .|..+..+|+ ..|+.+|+++|+++.+++.|++++...+ + .+++++++|+.+.... -+.+|.
T Consensus 15 ~~~~~ilDiGcG-~G~~~~~la~-~~p~~~v~gvD~~~~~l~~a~~~~~~~~-l-~ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 15 NKAPLHLEIGCG-KGRFLIDMAK-QNPDKNFLGIEIHTPIVLAANNKANKLG-L-KNLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CCCceEEEeCCC-ccHHHHHHHH-hCCCCCEEEEEeeHHHHHHHHHHHHHhC-C-CCEEEEccCHHHHHHhhCCCCceeE
Confidence 345699999999 8999999998 5788999999999999999999887755 4 4899999999875422 247999
Q ss_pred EEEcCcCCCCHHH-------HHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALVGMSKEE-------KMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~~~~~-------k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+++.+..++... ...+++.+.+.|||||.+.+.+
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 9987644332111 1579999999999999998876
No 63
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.40 E-value=2.9e-12 Score=113.71 Aligned_cols=100 Identities=17% Similarity=0.232 Sum_probs=81.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.++.+|||+||| .|..+..+++ .+.+|+++|+|+.+++.|+++.. ...++++|+.+.....+.||+|++
T Consensus 41 ~~~~~vLDiGcG-~G~~~~~l~~---~~~~v~~~D~s~~~l~~a~~~~~-------~~~~~~~d~~~~~~~~~~fD~V~s 109 (251)
T PRK10258 41 RKFTHVLDAGCG-PGWMSRYWRE---RGSQVTALDLSPPMLAQARQKDA-------ADHYLAGDIESLPLATATFDLAWS 109 (251)
T ss_pred cCCCeEEEeeCC-CCHHHHHHHH---cCCeEEEEECCHHHHHHHHhhCC-------CCCEEEcCcccCcCCCCcEEEEEE
Confidence 457899999999 7888888876 57899999999999999998742 246789998765433368999998
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+....+. .+...++.++.+.|+|||.+++..
T Consensus 110 ~~~l~~~-~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 110 NLAVQWC-GNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred Cchhhhc-CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 8655432 456789999999999999999865
No 64
>PRK06922 hypothetical protein; Provisional
Probab=99.39 E-value=7.5e-12 Score=122.82 Aligned_cols=107 Identities=15% Similarity=0.258 Sum_probs=86.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh--ccCCCccEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK--EKLGEYDCI 206 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~--~~l~~fD~V 206 (284)
.++.+|||+||| .|..+..+++ ..++.+|+|+|+|+.|++.|++.....+ .+++++++|+.+.. .+.+.||+|
T Consensus 417 ~~g~rVLDIGCG-TG~ls~~LA~-~~P~~kVtGIDIS~~MLe~Ararl~~~g---~~ie~I~gDa~dLp~~fedeSFDvV 491 (677)
T PRK06922 417 IKGDTIVDVGAG-GGVMLDMIEE-ETEDKRIYGIDISENVIDTLKKKKQNEG---RSWNVIKGDAINLSSSFEKESVDTI 491 (677)
T ss_pred cCCCEEEEeCCC-CCHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHhhhcC---CCeEEEEcchHhCccccCCCCEEEE
Confidence 467899999999 7988888887 5688999999999999999998865432 57889999988754 223689999
Q ss_pred EEcCcCCC------------CHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGM------------SKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~------------~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+++...+. ..++..++++++.+.|||||.+++..
T Consensus 492 Vsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 492 VYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 98754321 23567899999999999999999975
No 65
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.39 E-value=5e-12 Score=114.62 Aligned_cols=142 Identities=24% Similarity=0.285 Sum_probs=98.5
Q ss_pred HHHHhhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC
Q 039591 121 RILKENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL 200 (284)
Q Consensus 121 ~~l~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l 200 (284)
++|.++ ..++++|||+||| +|..++..++ ++..+|+++|+||.+++.|++|++. +++++++.+. ...+...
T Consensus 153 ~~l~~~-~~~g~~vLDvG~G-SGILaiaA~k--lGA~~v~a~DiDp~Av~~a~~N~~~-N~~~~~~~v~--~~~~~~~-- 223 (295)
T PF06325_consen 153 ELLEKY-VKPGKRVLDVGCG-SGILAIAAAK--LGAKKVVAIDIDPLAVEAARENAEL-NGVEDRIEVS--LSEDLVE-- 223 (295)
T ss_dssp HHHHHH-SSTTSEEEEES-T-TSHHHHHHHH--TTBSEEEEEESSCHHHHHHHHHHHH-TT-TTCEEES--CTSCTCC--
T ss_pred HHHHHh-ccCCCEEEEeCCc-HHHHHHHHHH--cCCCeEEEecCCHHHHHHHHHHHHH-cCCCeeEEEE--Eeccccc--
Confidence 344443 3678899999999 9999999888 4556899999999999999999876 5577777653 2222111
Q ss_pred CCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEeccchhhhcCCCCCCCCCCCcEEEEEEcCCCceeeEEEEEe
Q 039591 201 GEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSAKGARAFLYPVVERHDLLDFEVLSIFHPIDEVINSVILVR 280 (284)
Q Consensus 201 ~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~~g~~~~lyp~v~~~~l~gf~~~~~~~p~~~v~nsvi~~r 280 (284)
++||+|+.+-.. ..-..++..+.++|+|||.+++.+--.-+. +.+...--.||+++...+-.+|+ .+.+|
T Consensus 224 ~~~dlvvANI~~----~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~---~~v~~a~~~g~~~~~~~~~~~W~---~l~~~ 293 (295)
T PF06325_consen 224 GKFDLVVANILA----DVLLELAPDIASLLKPGGYLILSGILEEQE---DEVIEAYKQGFELVEEREEGEWV---ALVFK 293 (295)
T ss_dssp S-EEEEEEES-H----HHHHHHHHHCHHHEEEEEEEEEEEEEGGGH---HHHHHHHHTTEEEEEEEEETTEE---EEEEE
T ss_pred ccCCEEEECCCH----HHHHHHHHHHHHhhCCCCEEEEccccHHHH---HHHHHHHHCCCEEEEEEEECCEE---EEEEE
Confidence 789999987653 444778888999999999999976211100 00000001389999888888898 66666
Q ss_pred e
Q 039591 281 K 281 (284)
Q Consensus 281 k 281 (284)
|
T Consensus 294 K 294 (295)
T PF06325_consen 294 K 294 (295)
T ss_dssp E
T ss_pred e
Confidence 5
No 66
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.38 E-value=8.7e-12 Score=105.51 Aligned_cols=105 Identities=18% Similarity=0.266 Sum_probs=79.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
..-.+++|+||| .|..+..||. ...+++++|+++.+++.||+..+.. .+|+|+++|+.+.. +.++||+|++
T Consensus 42 ~ry~~alEvGCs-~G~lT~~LA~---rCd~LlavDis~~Al~~Ar~Rl~~~----~~V~~~~~dvp~~~-P~~~FDLIV~ 112 (201)
T PF05401_consen 42 RRYRRALEVGCS-IGVLTERLAP---RCDRLLAVDISPRALARARERLAGL----PHVEWIQADVPEFW-PEGRFDLIVL 112 (201)
T ss_dssp SSEEEEEEE--T-TSHHHHHHGG---GEEEEEEEES-HHHHHHHHHHTTT-----SSEEEEES-TTT----SS-EEEEEE
T ss_pred cccceeEecCCC-ccHHHHHHHH---hhCceEEEeCCHHHHHHHHHhcCCC----CCeEEEECcCCCCC-CCCCeeEEEE
Confidence 445789999999 9999999998 4578999999999999999987652 57999999998754 3389999998
Q ss_pred cCcC-CCC-HHHHHHHHHHHHhccccCcEEEEEecc
Q 039591 209 AALV-GMS-KEEKMKIIRHIRKYMKDGGILLVRSAK 242 (284)
Q Consensus 209 ~~~~-~~~-~~~k~~~l~~~~~~L~pGG~lv~~~~~ 242 (284)
.... .+. .++...+++.+.+.|+|||.+++-++.
T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 7633 333 357788999999999999999997753
No 67
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.38 E-value=6.6e-12 Score=114.80 Aligned_cols=106 Identities=21% Similarity=0.247 Sum_probs=88.3
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.++.+||||||| .|..++.+++ ..|+.+++++|. |.+++.|+++++..+ +.++++++.+|+.+. ++..+|+|++
T Consensus 148 ~~~~~vlDiG~G-~G~~~~~~~~-~~p~~~~~~~D~-~~~~~~a~~~~~~~g-l~~rv~~~~~d~~~~--~~~~~D~v~~ 221 (306)
T TIGR02716 148 DGVKKMIDVGGG-IGDISAAMLK-HFPELDSTILNL-PGAIDLVNENAAEKG-VADRMRGIAVDIYKE--SYPEADAVLF 221 (306)
T ss_pred CCCCEEEEeCCc-hhHHHHHHHH-HCCCCEEEEEec-HHHHHHHHHHHHhCC-ccceEEEEecCccCC--CCCCCCEEEe
Confidence 667899999999 8999999998 578899999998 899999999988755 678999999998753 3356899987
Q ss_pred cCcCC-CCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVG-MSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~-~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
....+ +..+....+++++.+.|+|||++++..
T Consensus 222 ~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 222 CRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred EhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 76544 334455789999999999999998865
No 68
>PRK08317 hypothetical protein; Provisional
Probab=99.37 E-value=9e-12 Score=108.55 Aligned_cols=109 Identities=19% Similarity=0.239 Sum_probs=86.6
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEE
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCI 206 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V 206 (284)
...++.+|||+||| .|..+..++++..++++++++|+++.+++.|+++... ...+++++.+|+.+.....+.||+|
T Consensus 16 ~~~~~~~vLdiG~G-~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~---~~~~~~~~~~d~~~~~~~~~~~D~v 91 (241)
T PRK08317 16 AVQPGDRVLDVGCG-PGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG---LGPNVEFVRGDADGLPFPDGSFDAV 91 (241)
T ss_pred CCCCCCEEEEeCCC-CCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC---CCCceEEEecccccCCCCCCCceEE
Confidence 34678899999999 7888888888323678999999999999999988433 2367999999987644334789999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
++....... .+...+++++.+.|+|||.+++..
T Consensus 92 ~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 92 RSDRVLQHL-EDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred EEechhhcc-CCHHHHHHHHHHHhcCCcEEEEEe
Confidence 987654332 456789999999999999998754
No 69
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=7.4e-11 Score=106.60 Aligned_cols=105 Identities=20% Similarity=0.263 Sum_probs=85.9
Q ss_pred eEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcCcC
Q 039591 133 KVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAALV 212 (284)
Q Consensus 133 ~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~~~ 212 (284)
+|+|+||| +|..++.+++ ..+.++|+++|+|+.+++.|++|+...+ + .++.++.+|+++... ++||+|+++.+.
T Consensus 113 ~ilDlGTG-SG~iai~la~-~~~~~~V~a~Dis~~Al~~A~~Na~~~~-l-~~~~~~~~dlf~~~~--~~fDlIVsNPPY 186 (280)
T COG2890 113 RILDLGTG-SGAIAIALAK-EGPDAEVIAVDISPDALALARENAERNG-L-VRVLVVQSDLFEPLR--GKFDLIVSNPPY 186 (280)
T ss_pred cEEEecCC-hHHHHHHHHh-hCcCCeEEEEECCHHHHHHHHHHHHHcC-C-ccEEEEeeecccccC--CceeEEEeCCCC
Confidence 79999999 9999999998 6788899999999999999999998866 5 677788888875433 589999998754
Q ss_pred CCC------H------------------HHHHHHHHHHHhccccCcEEEEEeccc
Q 039591 213 GMS------K------------------EEKMKIIRHIRKYMKDGGILLVRSAKG 243 (284)
Q Consensus 213 ~~~------~------------------~~k~~~l~~~~~~L~pGG~lv~~~~~g 243 (284)
-.. + +--.+++.++.++|+|||.+++....+
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~ 241 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT 241 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC
Confidence 111 0 112778889999999999999988633
No 70
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.36 E-value=9.4e-12 Score=107.63 Aligned_cols=105 Identities=19% Similarity=0.233 Sum_probs=84.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCC-cEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKA-THFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~-~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
.++.+|||+||| .|..+..+++ ..+. .+++++|+++.+++.++++.. . ..+++++.+|+.+.....+.||+|+
T Consensus 38 ~~~~~vldiG~G-~G~~~~~~~~-~~~~~~~~~~iD~~~~~~~~~~~~~~-~---~~~i~~~~~d~~~~~~~~~~~D~i~ 111 (223)
T TIGR01934 38 FKGQKVLDVACG-TGDLAIELAK-SAPDRGKVTGVDFSSEMLEVAKKKSE-L---PLNIEFIQADAEALPFEDNSFDAVT 111 (223)
T ss_pred CCCCeEEEeCCC-CChhHHHHHH-hcCCCceEEEEECCHHHHHHHHHHhc-c---CCCceEEecchhcCCCCCCcEEEEE
Confidence 578899999999 7888888887 3444 689999999999999998865 1 3679999999987544346899998
Q ss_pred EcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+....+.. .+...+++.+.+.|+|||++++..
T Consensus 112 ~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 112 IAFGLRNV-TDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred EeeeeCCc-ccHHHHHHHHHHHcCCCcEEEEEE
Confidence 87654332 456789999999999999998754
No 71
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.36 E-value=3.2e-11 Score=110.18 Aligned_cols=109 Identities=21% Similarity=0.280 Sum_probs=80.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCc----
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLK-ATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEY---- 203 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~-~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~f---- 203 (284)
.++.+|||+||| .|..+..+++ .++ +.+++++|+|++|++.|++.+.... ...++.++++|..+...-...+
T Consensus 62 ~~~~~iLELGcG-tG~~t~~Ll~-~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-p~~~v~~i~gD~~~~~~~~~~~~~~~ 138 (301)
T TIGR03438 62 GAGCELVELGSG-SSRKTRLLLD-ALRQPARYVPIDISADALKESAAALAADY-PQLEVHGICADFTQPLALPPEPAAGR 138 (301)
T ss_pred CCCCeEEecCCC-cchhHHHHHH-hhccCCeEEEEECCHHHHHHHHHHHHhhC-CCceEEEEEEcccchhhhhcccccCC
Confidence 466899999999 8988888887 344 6899999999999999998865421 1246788999987642222333
Q ss_pred -cEEEEcCcCC-CCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 204 -DCIFLAALVG-MSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 204 -D~V~~~~~~~-~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.++++.+..+ ..+++...++++++++|+|||.+++..
T Consensus 139 ~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 139 RLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred eEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 2444444443 456778899999999999999998743
No 72
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.36 E-value=4.9e-12 Score=116.80 Aligned_cols=104 Identities=20% Similarity=0.185 Sum_probs=84.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.++.+||||||| .|..+..+++ ..++.+|+++|+|+.+++.|+++... .+++++.+|+.+.....+.||+|++
T Consensus 112 ~~~~~VLDLGcG-tG~~~l~La~-~~~~~~VtgVD~S~~mL~~A~~k~~~-----~~i~~i~gD~e~lp~~~~sFDvVIs 184 (340)
T PLN02490 112 DRNLKVVDVGGG-TGFTTLGIVK-HVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIIEGDAEDLPFPTDYADRYVS 184 (340)
T ss_pred CCCCEEEEEecC-CcHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHhhhc-----cCCeEEeccHHhCCCCCCceeEEEE
Confidence 467899999999 8988888887 45778999999999999999987542 4688999999875444468999998
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+...... .++..+++++.+.|+|||++++..
T Consensus 185 ~~~L~~~-~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 185 AGSIEYW-PDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred cChhhhC-CCHHHHHHHHHHhcCCCcEEEEEE
Confidence 7655433 455789999999999999998754
No 73
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.36 E-value=9.8e-12 Score=105.82 Aligned_cols=104 Identities=20% Similarity=0.298 Sum_probs=82.3
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.++.++||+||| .|-.++.||+ .|..|+++|+|+.+++.+++.+++.+ -.|+..+.|+.+...+ +.||+|++
T Consensus 29 ~~~g~~LDlgcG-~GRNalyLA~---~G~~VtAvD~s~~al~~l~~~a~~~~---l~i~~~~~Dl~~~~~~-~~yD~I~s 100 (192)
T PF03848_consen 29 LKPGKALDLGCG-EGRNALYLAS---QGFDVTAVDISPVALEKLQRLAEEEG---LDIRTRVADLNDFDFP-EEYDFIVS 100 (192)
T ss_dssp S-SSEEEEES-T-TSHHHHHHHH---TT-EEEEEESSHHHHHHHHHHHHHTT----TEEEEE-BGCCBS-T-TTEEEEEE
T ss_pred cCCCcEEEcCCC-CcHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHhhcC---ceeEEEEecchhcccc-CCcCEEEE
Confidence 467899999999 9999999999 79999999999999999999887744 3499999998765332 68999987
Q ss_pred cCc-CCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AAL-VGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~-~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
... ....++..+.+++.+.+.++|||++++..
T Consensus 101 t~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 101 TVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp ESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 532 23445677899999999999999988865
No 74
>PRK00811 spermidine synthase; Provisional
Probab=99.36 E-value=1e-11 Score=112.48 Aligned_cols=110 Identities=20% Similarity=0.319 Sum_probs=86.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccC-C--CCCeEEEEcchhhhhccC-CCcc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFE-F--EKRMKFLTGDILQVKEKL-GEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~-l--~~~v~~~~~D~~~~~~~l-~~fD 204 (284)
..+++||+|||| .|.++..+++ +.+..+|+++|+|+++++.|++.+...+. . +.+++++.+|+.+..... ++||
T Consensus 75 ~~p~~VL~iG~G-~G~~~~~~l~-~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGG-DGGTLREVLK-HPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCCEEEEEecC-chHHHHHHHc-CCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 578899999999 8999998887 43456899999999999999998864321 1 468999999998765433 6899
Q ss_pred EEEEcCcCCCCHH---HHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGMSKE---EKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~~~~---~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+|+++..-...+. -..++++.+.+.|+|||++++..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 9999864322111 23788999999999999999864
No 75
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.36 E-value=1.5e-11 Score=107.30 Aligned_cols=137 Identities=7% Similarity=0.054 Sum_probs=100.0
Q ss_pred HHHHHhccCCccccccccccccchhhhhhHHHHHHHHhhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHH
Q 039591 88 EFATFLNKIPQPLNNLNLFPYYGNYVKLASFECRILKENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEA 167 (284)
Q Consensus 88 ~~a~~~~~~~~~~~~l~~fp~~~~y~~l~~~E~~~l~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~ 167 (284)
.|.+.+...+.+|......|+...|. .+....++.+||+.||| -|..+.+||. .|.+|+|+|+|+.
T Consensus 11 fW~~rw~~~~~~f~~~~pnp~L~~~~----------~~l~~~~~~rvLvPgCG-kg~D~~~LA~---~G~~V~GvDlS~~ 76 (226)
T PRK13256 11 YWLDRWQNDDVGFCQESPNEFLVKHF----------SKLNINDSSVCLIPMCG-CSIDMLFFLS---KGVKVIGIELSEK 76 (226)
T ss_pred HHHHHHhcCCCCCccCCCCHHHHHHH----------HhcCCCCCCeEEEeCCC-ChHHHHHHHh---CCCcEEEEecCHH
Confidence 45555555555554333334433321 11222456899999999 9999999998 7899999999999
Q ss_pred HHHHHHHHHh------------hccCCCCCeEEEEcchhhhhc---cCCCccEEEEcC-cCCCCHHHHHHHHHHHHhccc
Q 039591 168 ANNVARRIVA------------TDFEFEKRMKFLTGDILQVKE---KLGEYDCIFLAA-LVGMSKEEKMKIIRHIRKYMK 231 (284)
Q Consensus 168 ~~~~A~~~~~------------~~~~l~~~v~~~~~D~~~~~~---~l~~fD~V~~~~-~~~~~~~~k~~~l~~~~~~L~ 231 (284)
+++.+.+-.. ... +.++++.++|+++... ..++||.|+..+ +....++.+.++.+++.+.|+
T Consensus 77 Ai~~~~~e~~~~~~~~~~~~~~~~~--~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~ 154 (226)
T PRK13256 77 AVLSFFSQNTINYEVIHGNDYKLYK--GDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCS 154 (226)
T ss_pred HHHHHHHHcCCCcceecccccceec--cCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhC
Confidence 9999866210 011 3579999999998642 237899999855 457778889999999999999
Q ss_pred cCcEEEEEe
Q 039591 232 DGGILLVRS 240 (284)
Q Consensus 232 pGG~lv~~~ 240 (284)
|||.+++..
T Consensus 155 pgg~llll~ 163 (226)
T PRK13256 155 NNTQILLLV 163 (226)
T ss_pred CCcEEEEEE
Confidence 999987765
No 76
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.36 E-value=1e-11 Score=116.19 Aligned_cols=107 Identities=15% Similarity=0.200 Sum_probs=86.5
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCC--CCeEEEEcchhhhhccCCCccEEE
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFE--KRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~--~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
.+.+|||+||| .|..++.+++ ..|+.+|+++|+|+.+++.|+++++..+ .. .+++|+.+|..+.. ..++||+|+
T Consensus 228 ~~~~VLDLGCG-tGvi~i~la~-~~P~~~V~~vD~S~~Av~~A~~N~~~n~-~~~~~~v~~~~~D~l~~~-~~~~fDlIl 303 (378)
T PRK15001 228 LEGEIVDLGCG-NGVIGLTLLD-KNPQAKVVFVDESPMAVASSRLNVETNM-PEALDRCEFMINNALSGV-EPFRFNAVL 303 (378)
T ss_pred cCCeEEEEecc-ccHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-cccCceEEEEEccccccC-CCCCEEEEE
Confidence 34699999999 9999999998 5788999999999999999999987643 22 37899999986532 225799999
Q ss_pred EcCcCCC----CHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALVGM----SKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~~~----~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
++.+.+. ......++++++.++|+|||.+.+..
T Consensus 304 sNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 304 CNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 9976532 22445789999999999999998875
No 77
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.36 E-value=1.1e-11 Score=107.28 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=81.4
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
..++.+|||+||| .|+.+..+++ . ..+|+++|+++++++.|++++++.+ + .+++++.+|..+.....+.||+|+
T Consensus 76 ~~~~~~VLeiG~G-sG~~t~~la~-~--~~~v~~vd~~~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~fD~I~ 149 (212)
T PRK00312 76 LKPGDRVLEIGTG-SGYQAAVLAH-L--VRRVFSVERIKTLQWEAKRRLKQLG-L-HNVSVRHGDGWKGWPAYAPFDRIL 149 (212)
T ss_pred CCCCCEEEEECCC-ccHHHHHHHH-H--hCEEEEEeCCHHHHHHHHHHHHHCC-C-CceEEEECCcccCCCcCCCcCEEE
Confidence 4678999999999 8999888887 2 3589999999999999999988765 3 469999999865433347899999
Q ss_pred EcCcCCCCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 208 LAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
+++.. ..+.+.+.+.|+|||++++...
T Consensus 150 ~~~~~-------~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 150 VTAAA-------PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EccCc-------hhhhHHHHHhcCCCcEEEEEEc
Confidence 98755 2345667889999999987653
No 78
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.36 E-value=7.9e-12 Score=108.90 Aligned_cols=111 Identities=18% Similarity=0.214 Sum_probs=91.7
Q ss_pred hccCCCCeEEEecCCCChHHHHHHHhhcCCC------cEEEEEeCCHHHHHHHHHHHhhccCCCC--CeEEEEcchhhhh
Q 039591 126 NGVVQPKKVAFVGSGPMPLTSIVMAKNHLKA------THFDNFDIDEAANNVARRIVATDFEFEK--RMKFLTGDILQVK 197 (284)
Q Consensus 126 ~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~------~~V~~vDis~~~~~~A~~~~~~~~~l~~--~v~~~~~D~~~~~ 197 (284)
..+..+.++||+++| +|-.|..+.+ +.+. .+|+..|+||.|++.+++...+.+ +.+ ++.++++|+.+++
T Consensus 96 L~p~~~m~~lDvaGG-TGDiaFril~-~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~-l~~~~~~~w~~~dAE~Lp 172 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGG-TGDIAFRILR-HVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP-LKASSRVEWVEGDAEDLP 172 (296)
T ss_pred cCCCCCCeEEEecCC-cchhHHHHHH-hhccccCCCCceEEEEeCCHHHHHHHHHHHhhcC-CCcCCceEEEeCCcccCC
Confidence 345678999999999 9999999988 4454 799999999999999999986644 433 4999999999988
Q ss_pred ccCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 198 EKLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 198 ~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.+...||...++..+-.. .+.++.+++++|+|||||++.+-.
T Consensus 173 Fdd~s~D~yTiafGIRN~-th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 173 FDDDSFDAYTIAFGIRNV-THIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred CCCCcceeEEEecceecC-CCHHHHHHHHHHhcCCCcEEEEEE
Confidence 777899999888655222 456899999999999999988643
No 79
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.35 E-value=2.4e-12 Score=109.63 Aligned_cols=109 Identities=17% Similarity=0.266 Sum_probs=90.7
Q ss_pred HHHHhhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC
Q 039591 121 RILKENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL 200 (284)
Q Consensus 121 ~~l~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l 200 (284)
+++.+.....+.+|.|+||| -|-++-.|++ .+|++.|+|+|-|++|++.|++.. .+.+|..+|+.+...+
T Consensus 21 dLla~Vp~~~~~~v~DLGCG-pGnsTelL~~-RwP~A~i~GiDsS~~Mla~Aa~rl-------p~~~f~~aDl~~w~p~- 90 (257)
T COG4106 21 DLLARVPLERPRRVVDLGCG-PGNSTELLAR-RWPDAVITGIDSSPAMLAKAAQRL-------PDATFEEADLRTWKPE- 90 (257)
T ss_pred HHHhhCCccccceeeecCCC-CCHHHHHHHH-hCCCCeEeeccCCHHHHHHHHHhC-------CCCceecccHhhcCCC-
Confidence 34444455788999999999 5888888888 689999999999999999997763 4579999999876433
Q ss_pred CCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 201 GEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 201 ~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
..+|++|.++...+- ++..+++.++...|+|||.|.+..
T Consensus 91 ~~~dllfaNAvlqWl-pdH~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 91 QPTDLLFANAVLQWL-PDHPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred Cccchhhhhhhhhhc-cccHHHHHHHHHhhCCCceEEEEC
Confidence 689999999866543 777999999999999999999864
No 80
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.35 E-value=1.7e-11 Score=112.57 Aligned_cols=104 Identities=20% Similarity=0.254 Sum_probs=83.0
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEE
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCI 206 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V 206 (284)
..+++++|||+||| .|..+..+++.....++|+++|+++++++.|+++++..+ . +++.++++|+.+...+.+.||+|
T Consensus 77 ~i~~g~~VLDIG~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-~-~nV~~i~gD~~~~~~~~~~fD~I 153 (322)
T PRK13943 77 GLDKGMRVLEIGGG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-I-ENVIFVCGDGYYGVPEFAPYDVI 153 (322)
T ss_pred CCCCCCEEEEEeCC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEeCChhhcccccCCccEE
Confidence 34678899999999 899999999832223579999999999999999988766 3 67999999987655445789999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+++... ..+...+.+.|+|||++++..
T Consensus 154 i~~~g~-------~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 154 FVTVGV-------DEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred EECCch-------HHhHHHHHHhcCCCCEEEEEe
Confidence 998665 234456778999999988754
No 81
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.35 E-value=8.8e-12 Score=108.63 Aligned_cols=139 Identities=16% Similarity=0.201 Sum_probs=96.9
Q ss_pred HHHHHhccCCccccccccccccchhhhhhHHHHHHHHhhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHH
Q 039591 88 EFATFLNKIPQPLNNLNLFPYYGNYVKLASFECRILKENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEA 167 (284)
Q Consensus 88 ~~a~~~~~~~~~~~~l~~fp~~~~y~~l~~~E~~~l~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~ 167 (284)
.|.+.......+|+.-..-|....|.. .....++.+||+.||| -|....+||. .|.+|+|+|+|+.
T Consensus 5 ~W~~~w~~~~~~w~~~~~~p~L~~~~~----------~l~~~~~~rvLvPgCG-~g~D~~~La~---~G~~VvGvDls~~ 70 (218)
T PF05724_consen 5 FWEERWQEGQTPWDQGEPNPALVEYLD----------SLALKPGGRVLVPGCG-KGYDMLWLAE---QGHDVVGVDLSPT 70 (218)
T ss_dssp HHHHHHHTT--TT--TTSTHHHHHHHH----------HHTTSTSEEEEETTTT-TSCHHHHHHH---TTEEEEEEES-HH
T ss_pred HHHHHHhcCCCCCCCCCCCHHHHHHHH----------hcCCCCCCeEEEeCCC-ChHHHHHHHH---CCCeEEEEecCHH
Confidence 455555556666765555455544422 2234667799999999 9999999998 6899999999999
Q ss_pred HHHHHHHHHhh------ccC----CCCCeEEEEcchhhhhccC-CCccEEEEcC-cCCCCHHHHHHHHHHHHhccccCcE
Q 039591 168 ANNVARRIVAT------DFE----FEKRMKFLTGDILQVKEKL-GEYDCIFLAA-LVGMSKEEKMKIIRHIRKYMKDGGI 235 (284)
Q Consensus 168 ~~~~A~~~~~~------~~~----l~~~v~~~~~D~~~~~~~l-~~fD~V~~~~-~~~~~~~~k~~~l~~~~~~L~pGG~ 235 (284)
+++.+.+-... .+. -..+|++.++|+++..... ++||+|+..+ +...+++.+.++.+++.+.|+|||.
T Consensus 71 Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~ 150 (218)
T PF05724_consen 71 AIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGR 150 (218)
T ss_dssp HHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEE
T ss_pred HHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCc
Confidence 99998432111 000 1346899999999876544 7899999875 4567778999999999999999999
Q ss_pred EEEEe
Q 039591 236 LLVRS 240 (284)
Q Consensus 236 lv~~~ 240 (284)
+++..
T Consensus 151 ~lLi~ 155 (218)
T PF05724_consen 151 GLLIT 155 (218)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 54433
No 82
>PRK14967 putative methyltransferase; Provisional
Probab=99.34 E-value=2e-11 Score=106.64 Aligned_cols=107 Identities=16% Similarity=0.130 Sum_probs=82.5
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEE
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCI 206 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V 206 (284)
...++.+|||+||| .|..++.+++ .+..+|+++|+|+.+++.|+++++..+ .+++++++|+.+.. ..+.||+|
T Consensus 33 ~~~~~~~vLDlGcG-~G~~~~~la~--~~~~~v~~vD~s~~~l~~a~~n~~~~~---~~~~~~~~d~~~~~-~~~~fD~V 105 (223)
T PRK14967 33 GLGPGRRVLDLCTG-SGALAVAAAA--AGAGSVTAVDISRRAVRSARLNALLAG---VDVDVRRGDWARAV-EFRPFDVV 105 (223)
T ss_pred ccCCCCeEEEecCC-HHHHHHHHHH--cCCCeEEEEECCHHHHHHHHHHHHHhC---CeeEEEECchhhhc-cCCCeeEE
Confidence 34667899999999 7999999887 233599999999999999999987644 36899999987643 23689999
Q ss_pred EEcCcCCCCH--------------------HHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSK--------------------EEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~--------------------~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+++.+..... ..-..+++++.++|+|||++++..
T Consensus 106 i~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 106 VSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ 159 (223)
T ss_pred EECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9986432110 112567888999999999998743
No 83
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.34 E-value=1.5e-11 Score=103.78 Aligned_cols=103 Identities=17% Similarity=0.257 Sum_probs=81.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.++++|||+||| .|..+..+++ .+.+|+++|+|+.+++.|+++++..+ .+++++.+|+.+.. .++||+|++
T Consensus 18 ~~~~~vLdlG~G-~G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~--~~~fD~Vi~ 88 (179)
T TIGR00537 18 LKPDDVLEIGAG-TGLVAIRLKG---KGKCILTTDINPFAVKELRENAKLNN---VGLDVVMTDLFKGV--RGKFDVILF 88 (179)
T ss_pred cCCCeEEEeCCC-hhHHHHHHHh---cCCEEEEEECCHHHHHHHHHHHHHcC---CceEEEEccccccc--CCcccEEEE
Confidence 456899999999 8999999887 33499999999999999999987644 46899999987643 268999999
Q ss_pred cCcCCCCH--------------------HHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGMSK--------------------EEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~--------------------~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+.+..... ....++++++.++|+|||.+++..
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 86542111 113578999999999999988765
No 84
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.34 E-value=1.9e-11 Score=112.59 Aligned_cols=106 Identities=16% Similarity=0.173 Sum_probs=83.3
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
..+++||||||| .|..++.+++ . ....|+|+|.|+.++..++......+ ...+++|+.+|+.+... .+.||+|++
T Consensus 121 l~g~~VLDIGCG-~G~~~~~la~-~-g~~~V~GiD~S~~~l~q~~a~~~~~~-~~~~i~~~~~d~e~lp~-~~~FD~V~s 195 (322)
T PRK15068 121 LKGRTVLDVGCG-NGYHMWRMLG-A-GAKLVVGIDPSQLFLCQFEAVRKLLG-NDQRAHLLPLGIEQLPA-LKAFDTVFS 195 (322)
T ss_pred CCCCEEEEeccC-CcHHHHHHHH-c-CCCEEEEEcCCHHHHHHHHHHHHhcC-CCCCeEEEeCCHHHCCC-cCCcCEEEE
Confidence 567899999999 9999999988 2 33469999999999987655433222 23579999999987654 478999998
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.....+. .+...+++++.+.|+|||.+++..
T Consensus 196 ~~vl~H~-~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 196 MGVLYHR-RSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred CChhhcc-CCHHHHHHHHHHhcCCCcEEEEEE
Confidence 7655332 456789999999999999999764
No 85
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.33 E-value=1.7e-11 Score=111.25 Aligned_cols=102 Identities=26% Similarity=0.298 Sum_probs=82.2
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.++++|||+||| .|..++.+++ .+..+|+++|+|+.+++.|++++...+ +..++.+..+|..... .++||+|++
T Consensus 158 ~~g~~VLDvGcG-sG~lai~aa~--~g~~~V~avDid~~al~~a~~n~~~n~-~~~~~~~~~~~~~~~~--~~~fDlVva 231 (288)
T TIGR00406 158 LKDKNVIDVGCG-SGILSIAALK--LGAAKVVGIDIDPLAVESARKNAELNQ-VSDRLQVKLIYLEQPI--EGKADVIVA 231 (288)
T ss_pred CCCCEEEEeCCC-hhHHHHHHHH--cCCCeEEEEECCHHHHHHHHHHHHHcC-CCcceEEEeccccccc--CCCceEEEE
Confidence 577999999999 7999988887 345689999999999999999987644 5667888877743221 268999998
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+... .....++.++.+.|||||.+++..
T Consensus 232 n~~~----~~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 232 NILA----EVIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred ecCH----HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 7643 344688999999999999999865
No 86
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.33 E-value=2.2e-11 Score=109.62 Aligned_cols=126 Identities=18% Similarity=0.208 Sum_probs=89.5
Q ss_pred HHhhccCCCCeEEEecCCCChHHHHHHHhhcCC---CcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc
Q 039591 123 LKENGVVQPKKVAFVGSGPMPLTSIVMAKNHLK---ATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK 199 (284)
Q Consensus 123 l~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~---~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~ 199 (284)
+.+.....+.+|||+||| .|..+..+++ ..+ +..|+++|+|+.+++.|++.. .+++|..+|+.+.+..
T Consensus 78 l~~~l~~~~~~vLDiGcG-~G~~~~~l~~-~~~~~~~~~v~giD~s~~~l~~A~~~~-------~~~~~~~~d~~~lp~~ 148 (272)
T PRK11088 78 LAERLDEKATALLDIGCG-EGYYTHALAD-ALPEITTMQLFGLDISKVAIKYAAKRY-------PQVTFCVASSHRLPFA 148 (272)
T ss_pred HHHhcCCCCCeEEEECCc-CCHHHHHHHH-hcccccCCeEEEECCCHHHHHHHHHhC-------CCCeEEEeecccCCCc
Confidence 333333556789999999 8998888887 333 347999999999999998752 3578999998876544
Q ss_pred CCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEec-----cchhhhcCCCCCCC-----CCCCcEEEEE
Q 039591 200 LGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA-----KGARAFLYPVVERH-----DLLDFEVLSI 265 (284)
Q Consensus 200 l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~-----~g~~~~lyp~v~~~-----~l~gf~~~~~ 265 (284)
.+.||+|+.... ...++++.+.|||||++++... ..++..+|...... ...||+.+..
T Consensus 149 ~~sfD~I~~~~~--------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~~~~~~~~~~~~~~~~gF~~~~~ 216 (272)
T PRK11088 149 DQSLDAIIRIYA--------PCKAEELARVVKPGGIVITVTPGPRHLFELKGLIYDEVRLHAPEAEQLEGFELQHS 216 (272)
T ss_pred CCceeEEEEecC--------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHHhcccccccccchhhccCCCeeeE
Confidence 478999996532 2345788999999999998762 23455566543332 2367876543
No 87
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.33 E-value=3.6e-13 Score=102.40 Aligned_cols=97 Identities=21% Similarity=0.279 Sum_probs=62.8
Q ss_pred EEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCccEEEEcCcC
Q 039591 135 AFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEYDCIFLAALV 212 (284)
Q Consensus 135 L~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~fD~V~~~~~~ 212 (284)
|||||| .|..+..+.. ..+..+++++|+|+.+++.|++.+.... .........+..+..... ++||+|++....
T Consensus 1 LdiGcG-~G~~~~~l~~-~~~~~~~~~~D~s~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCG-TGRLLRALLE-ELPDARYTGVDISPSMLERARERLAELG--NDNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTT-TS-TTTTHHH-HC-EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCcc-ChHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHhhhcC--CcceeEEEeecCChhhcccccccceehhhhhH
Confidence 799999 8888888877 4689999999999999999998877643 133444444433322221 589999988766
Q ss_pred CCCHHHHHHHHHHHHhccccCcEE
Q 039591 213 GMSKEEKMKIIRHIRKYMKDGGIL 236 (284)
Q Consensus 213 ~~~~~~k~~~l~~~~~~L~pGG~l 236 (284)
++. +++..+++++.+.|+|||+|
T Consensus 77 ~~l-~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHL-EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S---S-HHHHHHHHTTT-TSS-EE
T ss_pred hhh-hhHHHHHHHHHHHcCCCCCC
Confidence 555 78889999999999999986
No 88
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.32 E-value=3.5e-11 Score=108.98 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=86.2
Q ss_pred CeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcCc
Q 039591 132 KKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAAL 211 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~~ 211 (284)
.+|||+||| .|..++.+++ ..++.+|+++|+|+.+++.|+++++..+ +..+++|+++|+.+... ..+||+|+++.+
T Consensus 116 ~~vLDlG~G-sG~i~l~la~-~~~~~~v~avDis~~al~~a~~n~~~~~-~~~~v~~~~~d~~~~~~-~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTG-SGCIALALAY-EFPNAEVIAVDISPDALAVAEENAEKNQ-LEHRVEFIQSNLFEPLA-GQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEecc-HhHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECchhccCc-CCCccEEEECCC
Confidence 699999999 9999999998 5678899999999999999999988755 55679999999876322 137999999854
Q ss_pred CCCC------------------------HHHHHHHHHHHHhccccCcEEEEEeccc
Q 039591 212 VGMS------------------------KEEKMKIIRHIRKYMKDGGILLVRSAKG 243 (284)
Q Consensus 212 ~~~~------------------------~~~k~~~l~~~~~~L~pGG~lv~~~~~g 243 (284)
.-.. ...-..++.++.++|+|||.+++...+.
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 3110 0123578899999999999999877533
No 89
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.32 E-value=2.8e-11 Score=107.75 Aligned_cols=136 Identities=20% Similarity=0.162 Sum_probs=96.4
Q ss_pred CCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc-C-CCccEEEE
Q 039591 131 PKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK-L-GEYDCIFL 208 (284)
Q Consensus 131 ~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~-l-~~fD~V~~ 208 (284)
+.+|||+||| .|..++.+++ ..++.+|+++|+|+.+++.|+++++..+ ++++++|+.+.... + ++||+|++
T Consensus 87 ~~~vLDlg~G-sG~i~l~la~-~~~~~~v~~vDis~~al~~A~~N~~~~~-----~~~~~~D~~~~l~~~~~~~fDlVv~ 159 (251)
T TIGR03704 87 TLVVVDLCCG-SGAVGAALAA-ALDGIELHAADIDPAAVRCARRNLADAG-----GTVHEGDLYDALPTALRGRVDILAA 159 (251)
T ss_pred CCEEEEecCc-hHHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-----CEEEEeechhhcchhcCCCEeEEEE
Confidence 4689999999 8999999987 4677899999999999999999987632 47899998764321 2 57999999
Q ss_pred cCcCCC-------CHHH------------------HHHHHHHHHhccccCcEEEEEeccchhh-hcCCCCCCCCCCCcEE
Q 039591 209 AALVGM-------SKEE------------------KMKIIRHIRKYMKDGGILLVRSAKGARA-FLYPVVERHDLLDFEV 262 (284)
Q Consensus 209 ~~~~~~-------~~~~------------------k~~~l~~~~~~L~pGG~lv~~~~~g~~~-~lyp~v~~~~l~gf~~ 262 (284)
+.+.-. .++. -.++++.+.++|+|||.+++........ +. ..-.-.||+.
T Consensus 160 NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~----~~l~~~g~~~ 235 (251)
T TIGR03704 160 NAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAV----EAFARAGLIA 235 (251)
T ss_pred CCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHH----HHHHHCCCCc
Confidence 975421 1110 2478888889999999999876322111 11 0001257887
Q ss_pred EEEEcCCCceeeEEEEE
Q 039591 263 LSIFHPIDEVINSVILV 279 (284)
Q Consensus 263 ~~~~~p~~~v~nsvi~~ 279 (284)
....|+.- +.+|+++
T Consensus 236 ~~~~~~~~--~~~~~~~ 250 (251)
T TIGR03704 236 RVASSEEL--YATVVIG 250 (251)
T ss_pred eeeEcccc--cceeeec
Confidence 77777754 5566653
No 90
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.31 E-value=5.3e-11 Score=98.94 Aligned_cols=147 Identities=24% Similarity=0.351 Sum_probs=100.1
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
....+|||+||| -|.....|++ ..-....+++|.|+.++++|+..+++.+ +++.|+|.+.|+.+.....++||+|+.
T Consensus 66 ~~A~~VlDLGtG-NG~~L~~L~~-egf~~~L~GvDYs~~AV~LA~niAe~~~-~~n~I~f~q~DI~~~~~~~~qfdlvlD 142 (227)
T KOG1271|consen 66 KQADRVLDLGTG-NGHLLFQLAK-EGFQSKLTGVDYSEKAVELAQNIAERDG-FSNEIRFQQLDITDPDFLSGQFDLVLD 142 (227)
T ss_pred ccccceeeccCC-chHHHHHHHH-hcCCCCccccccCHHHHHHHHHHHHhcC-CCcceeEEEeeccCCcccccceeEEee
Confidence 445599999999 9999989998 3333459999999999999999988855 667799999999874333488999874
Q ss_pred cC------cCCCCHHHH-HHHHHHHHhccccCcEEEEEeccchhhhcCCCCCCCCCCCcEEEEEEc-C-------CCcee
Q 039591 209 AA------LVGMSKEEK-MKIIRHIRKYMKDGGILLVRSAKGARAFLYPVVERHDLLDFEVLSIFH-P-------IDEVI 273 (284)
Q Consensus 209 ~~------~~~~~~~~k-~~~l~~~~~~L~pGG~lv~~~~~g~~~~lyp~v~~~~l~gf~~~~~~~-p-------~~~v~ 273 (284)
-. +.+..+..| .-.+..+.+.|+|||++++.+.+--..-+ ++...-.||+++..+- | .+.++
T Consensus 143 KGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dEL---v~~f~~~~f~~~~tvp~ptF~FgG~~G~tv 219 (227)
T KOG1271|consen 143 KGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDEL---VEEFENFNFEYLSTVPTPTFMFGGSVGSTV 219 (227)
T ss_pred cCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHH---HHHHhcCCeEEEEeeccceEEeccccccEE
Confidence 22 112222223 45677888999999999998832211111 0111224688876542 2 23566
Q ss_pred eEEEEEee
Q 039591 274 NSVILVRK 281 (284)
Q Consensus 274 nsvi~~rk 281 (284)
.|++|.||
T Consensus 220 t~vaF~~k 227 (227)
T KOG1271|consen 220 TSVAFLRK 227 (227)
T ss_pred EEEEEecC
Confidence 66777665
No 91
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.31 E-value=3.3e-11 Score=105.15 Aligned_cols=103 Identities=17% Similarity=0.323 Sum_probs=84.6
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
..+.+|||+||| .|..+..+++ ..+..+++++|+++.+++.+++... .+++++.+|+.+.....+.||+|++
T Consensus 33 ~~~~~vLDlG~G-~G~~~~~l~~-~~~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD~vi~ 104 (240)
T TIGR02072 33 FIPASVLDIGCG-TGYLTRALLK-RFPQAEFIALDISAGMLAQAKTKLS------ENVQFICGDAEKLPLEDSSFDLIVS 104 (240)
T ss_pred CCCCeEEEECCC-ccHHHHHHHH-hCCCCcEEEEeChHHHHHHHHHhcC------CCCeEEecchhhCCCCCCceeEEEE
Confidence 445799999999 8888888888 5677889999999999999987642 4688999999876434478999998
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
....++. .+...+++++.+.|+|||.+++..
T Consensus 105 ~~~l~~~-~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 105 NLALQWC-DDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred hhhhhhc-cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 8765433 456789999999999999999865
No 92
>PLN02366 spermidine synthase
Probab=99.31 E-value=3.2e-11 Score=110.22 Aligned_cols=110 Identities=21% Similarity=0.360 Sum_probs=87.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhcc-CC-CCCeEEEEcchhhhhccC--CCcc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDF-EF-EKRMKFLTGDILQVKEKL--GEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~-~l-~~~v~~~~~D~~~~~~~l--~~fD 204 (284)
.++++||+||+| .|.++..+++ +.+..+|+.+|+|+.+++.|++.+...+ ++ +.+++++.+|+.+..... ++||
T Consensus 90 ~~pkrVLiIGgG-~G~~~rellk-~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGG-DGGVLREIAR-HSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCC-ccHHHHHHHh-CCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence 678999999999 8999999988 4334689999999999999999876432 12 468999999998765443 5799
Q ss_pred EEEEcCcCCCCHH---HHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGMSKE---EKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~~~~---~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+|+++......+. -..++++.+.+.|+|||+++...
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 9999875432222 24689999999999999998754
No 93
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.31 E-value=3.5e-11 Score=111.67 Aligned_cols=105 Identities=22% Similarity=0.268 Sum_probs=85.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
....+|||+||| .|..++.+++ ..++.+|+++|+|+.+++.|+++++..+ + ..+++.+|+.+.. .+.||+|++
T Consensus 195 ~~~g~VLDlGCG-~G~ls~~la~-~~p~~~v~~vDis~~Al~~A~~nl~~n~-l--~~~~~~~D~~~~~--~~~fDlIvs 267 (342)
T PRK09489 195 HTKGKVLDVGCG-AGVLSAVLAR-HSPKIRLTLSDVSAAALESSRATLAANG-L--EGEVFASNVFSDI--KGRFDMIIS 267 (342)
T ss_pred cCCCeEEEeccC-cCHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-C--CCEEEEccccccc--CCCccEEEE
Confidence 345689999999 8999999998 5677899999999999999999988744 3 3577888876422 268999999
Q ss_pred cCcCCC----CHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGM----SKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~----~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+.+.+. ......++++++.++|+|||.+++..
T Consensus 268 NPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 268 NPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 986643 23456899999999999999998765
No 94
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.31 E-value=1.3e-11 Score=106.15 Aligned_cols=106 Identities=17% Similarity=0.311 Sum_probs=93.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC------CC
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL------GE 202 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l------~~ 202 (284)
..+++++|||.= +|++++.+|...-.+++|+++|+|++..+.+.+..+.-| ..+.|+++.+++.+...++ +.
T Consensus 72 ~~ak~~lelGvf-TGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag-v~~KI~~i~g~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 72 LNAKRTLELGVF-TGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG-VDHKITFIEGPALESLDELLADGESGT 149 (237)
T ss_pred hCCceEEEEecc-cCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc-ccceeeeeecchhhhHHHHHhcCCCCc
Confidence 578999999999 999999999865678999999999999999999988744 7899999999998865433 78
Q ss_pred ccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 203 YDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 203 fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
||++|+++....+ ...++++.+.+|+||+|++.+
T Consensus 150 fDfaFvDadK~nY----~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 150 FDFAFVDADKDNY----SNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred eeEEEEccchHHH----HHHHHHHHhhcccccEEEEec
Confidence 9999999998555 589999999999999999988
No 95
>PRK01581 speE spermidine synthase; Validated
Probab=99.30 E-value=3.1e-11 Score=111.57 Aligned_cols=110 Identities=22% Similarity=0.310 Sum_probs=85.6
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHH--h---hccCCCCCeEEEEcchhhhhccC-CC
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIV--A---TDFEFEKRMKFLTGDILQVKEKL-GE 202 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~--~---~~~~l~~~v~~~~~D~~~~~~~l-~~ 202 (284)
..+++||+||+| .|.++..+.+ +.+..+|+++|+|+++++.|++.. . +.+.-+.+++++.+|+.+..... +.
T Consensus 149 ~~PkrVLIIGgG-dG~tlrelLk-~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 149 IDPKRVLILGGG-DGLALREVLK-YETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCCEEEEECCC-HHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence 678899999999 9998888887 445679999999999999999731 1 10101479999999999865444 68
Q ss_pred ccEEEEcCcCCC----CHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 203 YDCIFLAALVGM----SKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 203 fD~V~~~~~~~~----~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
||+|+++..-.. ......++++.+.+.|+|||++++..
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999999964321 11234789999999999999998875
No 96
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.30 E-value=4.6e-11 Score=107.16 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=84.0
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
..++.+|||+||||.|. +..+++.....+.|+++|+++.+++.+++++++.+ + .+++++.+|+.......+.||+|+
T Consensus 69 ~~~g~~VLDl~ag~G~k-t~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-~-~~v~~~~~D~~~~~~~~~~fD~Vl 145 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGK-TTQISALMKNEGAIVANEFSKSRTKVLIANINRCG-V-LNVAVTNFDGRVFGAAVPKFDAIL 145 (264)
T ss_pred CCCcCEEEEECCCchHH-HHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-C-CcEEEecCCHHHhhhhccCCCEEE
Confidence 36789999999996555 45555523345699999999999999999998866 3 569999999876543346799999
Q ss_pred EcCcC-CC-------------CH-------HHHHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALV-GM-------------SK-------EEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~-~~-------------~~-------~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
++++. +. .. ....++++++.+.|||||+|++.+
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 98753 11 11 123569999999999999999876
No 97
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.29 E-value=4.2e-11 Score=109.71 Aligned_cols=108 Identities=16% Similarity=0.142 Sum_probs=82.2
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEE
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCI 206 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V 206 (284)
...++++||||||| .|+.+..++. . ....|+|+|.|+.++..++...+..+ ...++.+..+++.+... ...||+|
T Consensus 118 ~~~~g~~VLDvGCG-~G~~~~~~~~-~-g~~~v~GiDpS~~ml~q~~~~~~~~~-~~~~v~~~~~~ie~lp~-~~~FD~V 192 (314)
T TIGR00452 118 SPLKGRTILDVGCG-SGYHMWRMLG-H-GAKSLVGIDPTVLFLCQFEAVRKLLD-NDKRAILEPLGIEQLHE-LYAFDTV 192 (314)
T ss_pred CCCCCCEEEEeccC-CcHHHHHHHH-c-CCCEEEEEcCCHHHHHHHHHHHHHhc-cCCCeEEEECCHHHCCC-CCCcCEE
Confidence 34678999999999 8998888887 2 33479999999999987654322212 23578899999887543 3689999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
++.....+. .+...+++++.+.|+|||.|++..
T Consensus 193 ~s~gvL~H~-~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 193 FSMGVLYHR-KSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEcchhhcc-CCHHHHHHHHHHhcCCCCEEEEEE
Confidence 998755333 455789999999999999999864
No 98
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.28 E-value=6.5e-11 Score=110.68 Aligned_cols=109 Identities=18% Similarity=0.166 Sum_probs=89.0
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc--CCCccE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK--LGEYDC 205 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~--l~~fD~ 205 (284)
...+..+|||||| .|..++.+|+ ..|+..++|+|+++.+++.|.+.+...+ + .++.++++|+.+.... .+.+|.
T Consensus 120 ~~~~p~vLEIGcG-sG~~ll~lA~-~~P~~~~iGIEI~~~~i~~a~~ka~~~g-L-~NV~~i~~DA~~ll~~~~~~s~D~ 195 (390)
T PRK14121 120 KNQEKILIEIGFG-SGRHLLYQAK-NNPNKLFIGIEIHTPSIEQVLKQIELLN-L-KNLLIINYDARLLLELLPSNSVEK 195 (390)
T ss_pred CCCCCeEEEEcCc-ccHHHHHHHH-hCCCCCEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEECCHHHhhhhCCCCceeE
Confidence 3456699999999 8999999998 5689999999999999999999987755 4 5799999999765322 278999
Q ss_pred EEEcCcCCCCHHH-----HHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALVGMSKEE-----KMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~~~~~-----k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|++.-+..|.... ...+++.+.+.|+|||.+.+.+
T Consensus 196 I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 196 IFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred EEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 9987655443221 1589999999999999999977
No 99
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=6.1e-11 Score=106.49 Aligned_cols=106 Identities=22% Similarity=0.286 Sum_probs=85.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
..+.+|||+||| .|..++.+++ ..|..+++.+|+|..+++.||+++..-+ + ++..+...|..+-.. ++||.|++
T Consensus 157 ~~~~~vlDlGCG-~Gvlg~~la~-~~p~~~vtmvDvn~~Av~~ar~Nl~~N~-~-~~~~v~~s~~~~~v~--~kfd~Iis 230 (300)
T COG2813 157 DLGGKVLDLGCG-YGVLGLVLAK-KSPQAKLTLVDVNARAVESARKNLAANG-V-ENTEVWASNLYEPVE--GKFDLIIS 230 (300)
T ss_pred cCCCcEEEeCCC-ccHHHHHHHH-hCCCCeEEEEecCHHHHHHHHHhHHHcC-C-CccEEEEeccccccc--ccccEEEe
Confidence 445599999999 9999999999 6788999999999999999999988633 3 333677888876443 48999999
Q ss_pred cCcCCCCHH----HHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGMSKE----EKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~~----~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+.+.+.-.. --+++++.+.++|++||.|-+..
T Consensus 231 NPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 231 NPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred CCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 998753222 23599999999999999987765
No 100
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.27 E-value=6.9e-11 Score=111.32 Aligned_cols=104 Identities=14% Similarity=0.187 Sum_probs=83.3
Q ss_pred hccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccE
Q 039591 126 NGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDC 205 (284)
Q Consensus 126 ~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~ 205 (284)
....++.+||||||| .|..++.+++ ..+++|+++|+|+++++.|+++.+. ..+++..+|..+. .+.||.
T Consensus 163 l~l~~g~rVLDIGcG-~G~~a~~la~--~~g~~V~giDlS~~~l~~A~~~~~~-----l~v~~~~~D~~~l---~~~fD~ 231 (383)
T PRK11705 163 LQLKPGMRVLDIGCG-WGGLARYAAE--HYGVSVVGVTISAEQQKLAQERCAG-----LPVEIRLQDYRDL---NGQFDR 231 (383)
T ss_pred hCCCCCCEEEEeCCC-ccHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHhcc-----CeEEEEECchhhc---CCCCCE
Confidence 334788999999999 8888888887 2478999999999999999998742 2488889998653 268999
Q ss_pred EEEcCcC-CCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALV-GMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~-~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|++.... +....+...+++++.+.|||||++++..
T Consensus 232 Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 232 IVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9876543 2223456789999999999999999864
No 101
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.26 E-value=1e-10 Score=101.02 Aligned_cols=100 Identities=12% Similarity=0.239 Sum_probs=79.6
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.++.+|||+||| .|..+..+++ ..++.+++|+|+|+++++.|+++. .++++.++|+.+ ....++||+|++
T Consensus 42 ~~~~~VLDiGCG-~G~~~~~L~~-~~~~~~v~giDiS~~~l~~A~~~~-------~~~~~~~~d~~~-~~~~~sfD~V~~ 111 (204)
T TIGR03587 42 PKIASILELGAN-IGMNLAALKR-LLPFKHIYGVEINEYAVEKAKAYL-------PNINIIQGSLFD-PFKDNFFDLVLT 111 (204)
T ss_pred CCCCcEEEEecC-CCHHHHHHHH-hCCCCeEEEEECCHHHHHHHHhhC-------CCCcEEEeeccC-CCCCCCEEEEEE
Confidence 567899999999 8999999987 457889999999999999999863 246788899876 334478999998
Q ss_pred cCcC-CCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALV-GMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~-~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.... +..+++..++++++.+.+ ++.+++..
T Consensus 112 ~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 112 KGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 7754 556667889999999987 44555533
No 102
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.26 E-value=1.4e-10 Score=102.44 Aligned_cols=108 Identities=25% Similarity=0.291 Sum_probs=85.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
..+.+|||+||| .|..++.+++ ..++.+++++|+++.+++.|++++...+ + .+++++++|+.+.. ..++||+|++
T Consensus 86 ~~~~~ilDig~G-~G~~~~~l~~-~~~~~~v~~iD~~~~~~~~a~~~~~~~~-~-~~~~~~~~d~~~~~-~~~~fD~Vi~ 160 (251)
T TIGR03534 86 KGPLRVLDLGTG-SGAIALALAK-ERPDARVTAVDISPEALAVARKNAARLG-L-DNVTFLQSDWFEPL-PGGKFDLIVS 160 (251)
T ss_pred cCCCeEEEEeCc-HhHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CeEEEEECchhccC-cCCceeEEEE
Confidence 455699999999 8999999998 5678899999999999999999987755 3 47999999997632 2378999999
Q ss_pred cCcCCCC-------HHH------------------HHHHHHHHHhccccCcEEEEEec
Q 039591 209 AALVGMS-------KEE------------------KMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 209 ~~~~~~~-------~~~------------------k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
+.+.... ... -..+++++.+.|+|||.+++...
T Consensus 161 npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 161 NPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred CCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 7654211 111 13688999999999999998764
No 103
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.25 E-value=5.5e-11 Score=106.65 Aligned_cols=114 Identities=20% Similarity=0.313 Sum_probs=85.0
Q ss_pred CCCCeEEEecCCCChHH----HHHHHhhcCC-----CcEEEEEeCCHHHHHHHHHHHhh------c------------c-
Q 039591 129 VQPKKVAFVGSGPMPLT----SIVMAKNHLK-----ATHFDNFDIDEAANNVARRIVAT------D------------F- 180 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~----ai~la~~~~~-----~~~V~~vDis~~~~~~A~~~~~~------~------------~- 180 (284)
.++.+|+++||| +|-. ++.+++ ..+ +.+|+|+|+|+.+++.|++.+-. . +
T Consensus 98 ~~~~ri~d~GCg-tGee~YslA~~l~e-~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~ 175 (264)
T smart00138 98 GRRVRIWSAGCS-TGEEPYSLAMLLAE-TLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVED 175 (264)
T ss_pred CCCEEEEecccc-CChHHHHHHHHHHH-HhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCC
Confidence 356799999999 8964 444554 222 57899999999999999986410 0 0
Q ss_pred ------CCCCCeEEEEcchhhhhccCCCccEEEEcCc-CCCCHHHHHHHHHHHHhccccCcEEEEEeccch
Q 039591 181 ------EFEKRMKFLTGDILQVKEKLGEYDCIFLAAL-VGMSKEEKMKIIRHIRKYMKDGGILLVRSAKGA 244 (284)
Q Consensus 181 ------~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~~-~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~~g~ 244 (284)
.+..+|+|.++|+.+.....++||+|++... .....+++.++++++.+.|+|||.+++-.+..+
T Consensus 176 ~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~~ 246 (264)
T smart00138 176 KYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSESL 246 (264)
T ss_pred eEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcccC
Confidence 0224799999999875444578999998653 345567888999999999999999998664443
No 104
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.25 E-value=5.6e-11 Score=105.14 Aligned_cols=107 Identities=18% Similarity=0.246 Sum_probs=86.2
Q ss_pred hccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc--cC-CC
Q 039591 126 NGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE--KL-GE 202 (284)
Q Consensus 126 ~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~--~l-~~ 202 (284)
....+|++|+|.|+| +|..+..|++...|.++|+.+|+.+++++.|+++++..| +.+++++...|+.+.-. ++ ..
T Consensus 36 l~i~pG~~VlEaGtG-SG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g-l~~~v~~~~~Dv~~~g~~~~~~~~ 113 (247)
T PF08704_consen 36 LDIRPGSRVLEAGTG-SGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG-LDDNVTVHHRDVCEEGFDEELESD 113 (247)
T ss_dssp TT--TT-EEEEE--T-TSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-CCTTEEEEES-GGCG--STT-TTS
T ss_pred cCCCCCCEEEEecCC-cHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC-CCCCceeEecceecccccccccCc
Confidence 455899999999999 899999999867889999999999999999999999876 67899999999964222 22 67
Q ss_pred ccEEEEcCcCCCCHHHHHHHHHHHHhcc-ccCcEEEEEe
Q 039591 203 YDCIFLAALVGMSKEEKMKIIRHIRKYM-KDGGILLVRS 240 (284)
Q Consensus 203 fD~V~~~~~~~~~~~~k~~~l~~~~~~L-~pGG~lv~~~ 240 (284)
+|.||+|.+.. ...+.++.+.| +|||+++..+
T Consensus 114 ~DavfLDlp~P------w~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 114 FDAVFLDLPDP------WEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp EEEEEEESSSG------GGGHHHHHHHE-EEEEEEEEEE
T ss_pred ccEEEEeCCCH------HHHHHHHHHHHhcCCceEEEEC
Confidence 99999997653 67899999999 9999999876
No 105
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.25 E-value=1e-10 Score=111.80 Aligned_cols=110 Identities=18% Similarity=0.226 Sum_probs=84.8
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc-CCCccEE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK-LGEYDCI 206 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~-l~~fD~V 206 (284)
..++.+|||+||||+|.+ +.++....++++|+++|+++.+++.+++++++.| + .+++++++|+.+.... .+.||.|
T Consensus 235 ~~~g~~VLD~cagpGgkt-~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-~-~~v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKT-TAIAELMKDQGKILAVDISREKIQLVEKHAKRLK-L-SSIEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred CCCCCEEEEeCCCccHHH-HHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CeEEEEECchhhhhhhhhccCCEE
Confidence 467889999999966654 4555523356899999999999999999999876 4 4689999999865322 2679999
Q ss_pred EEcCcC---CCC---H---------------HHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALV---GMS---K---------------EEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~---~~~---~---------------~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+++++. |.. + ....++++++.+.|||||++++.+
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 998654 211 1 123678999999999999999877
No 106
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.24 E-value=1.1e-10 Score=101.69 Aligned_cols=103 Identities=23% Similarity=0.333 Sum_probs=82.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.++.+|||+||| .|..+..+++ .+.+|+++|+|+++++.|++.....+ ...+++|.++|+.+.. +.||+|++
T Consensus 54 ~~~~~vLDiGcG-~G~~~~~la~---~~~~v~gvD~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~~~~~---~~fD~ii~ 125 (219)
T TIGR02021 54 LKGKRVLDAGCG-TGLLSIELAK---RGAIVKAVDISEQMVQMARNRAQGRD-VAGNVEFEVNDLLSLC---GEFDIVVC 125 (219)
T ss_pred CCCCEEEEEeCC-CCHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECChhhCC---CCcCEEEE
Confidence 467899999999 8999999987 46799999999999999999876533 3357999999987643 68999998
Q ss_pred cCcC-CCCHHHHHHHHHHHHhccccCcEEEEE
Q 039591 209 AALV-GMSKEEKMKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 209 ~~~~-~~~~~~k~~~l~~~~~~L~pGG~lv~~ 239 (284)
...+ +...++...++.++.+.+++|+++.+.
T Consensus 126 ~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 126 MDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred hhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 6554 334456778999999988877666653
No 107
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.24 E-value=1.4e-10 Score=107.13 Aligned_cols=107 Identities=17% Similarity=0.039 Sum_probs=86.2
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
..++++|||+||| +|..++..+. .+.+++++|+|+.+++.|+++++..+ +. ++++.++|+.+.....+.||+|+
T Consensus 180 ~~~g~~vLDp~cG-tG~~lieaa~---~~~~v~g~Di~~~~~~~a~~nl~~~g-~~-~i~~~~~D~~~l~~~~~~~D~Iv 253 (329)
T TIGR01177 180 VTEGDRVLDPFCG-TGGFLIEAGL---MGAKVIGCDIDWKMVAGARINLEHYG-IE-DFFVKRGDATKLPLSSESVDAIA 253 (329)
T ss_pred CCCcCEEEECCCC-CCHHHHHHHH---hCCeEEEEcCCHHHHHHHHHHHHHhC-CC-CCeEEecchhcCCcccCCCCEEE
Confidence 3678899999999 7877777665 57899999999999999999988766 43 48999999987543346899999
Q ss_pred EcCcCCCC-------H-HHHHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALVGMS-------K-EEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~~~~-------~-~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
++.+.+.. . ....++++.+.+.|+|||++++..
T Consensus 254 ~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 254 TDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred ECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 99765431 1 224789999999999999998765
No 108
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.23 E-value=1e-10 Score=95.82 Aligned_cols=97 Identities=18% Similarity=0.242 Sum_probs=74.4
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
..++.+|||+||| .|..+..+++ .+.+++++|+++.+++. . .+.+...+..+....-+.||+|+
T Consensus 20 ~~~~~~vLDiGcG-~G~~~~~l~~---~~~~~~g~D~~~~~~~~-----~-------~~~~~~~~~~~~~~~~~~fD~i~ 83 (161)
T PF13489_consen 20 LKPGKRVLDIGCG-TGSFLRALAK---RGFEVTGVDISPQMIEK-----R-------NVVFDNFDAQDPPFPDGSFDLII 83 (161)
T ss_dssp TTTTSEEEEESST-TSHHHHHHHH---TTSEEEEEESSHHHHHH-----T-------TSEEEEEECHTHHCHSSSEEEEE
T ss_pred cCCCCEEEEEcCC-CCHHHHHHHH---hCCEEEEEECCHHHHhh-----h-------hhhhhhhhhhhhhccccchhhHh
Confidence 3678899999999 8988988887 46699999999999988 1 12222332222222337899999
Q ss_pred EcCcCCCCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 208 LAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
+.....+. ++...+++++.+.|||||++++...
T Consensus 84 ~~~~l~~~-~d~~~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 84 CNDVLEHL-PDPEEFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp EESSGGGS-SHHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred hHHHHhhc-ccHHHHHHHHHHhcCCCCEEEEEEc
Confidence 98766444 4789999999999999999999874
No 109
>PRK14968 putative methyltransferase; Provisional
Probab=99.22 E-value=2e-10 Score=96.85 Aligned_cols=106 Identities=20% Similarity=0.325 Sum_probs=82.6
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCC-eEEEEcchhhhhccCCCccEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKR-MKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~-v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
.++++|||+||| .|..+..+++ .+.+|+++|+|+++++.+++++...+ +..+ +.++.+|+.+...+ ..||+|+
T Consensus 22 ~~~~~vLd~G~G-~G~~~~~l~~---~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~d~~~~~~~-~~~d~vi 95 (188)
T PRK14968 22 KKGDRVLEVGTG-SGIVAIVAAK---NGKKVVGVDINPYAVECAKCNAKLNN-IRNNGVEVIRSDLFEPFRG-DKFDVIL 95 (188)
T ss_pred cCCCEEEEEccc-cCHHHHHHHh---hcceEEEEECCHHHHHHHHHHHHHcC-CCCcceEEEeccccccccc-cCceEEE
Confidence 567899999999 9999999998 27899999999999999999987644 3333 88999998764322 4799999
Q ss_pred EcCcCCCC--------------------HHHHHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALVGMS--------------------KEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~~~~--------------------~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.+.+.... ......+++++.++|+|||.+++..
T Consensus 96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 87654210 1223568999999999999887654
No 110
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.21 E-value=2.4e-10 Score=109.30 Aligned_cols=108 Identities=17% Similarity=0.178 Sum_probs=83.1
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc--cCCCccE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE--KLGEYDC 205 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~--~l~~fD~ 205 (284)
..++++|||+|||| |..++.+++ ..++++|+++|+++.+++.++++++..| + .++++++|+.+... ..++||.
T Consensus 242 ~~~g~~VLDlgaG~-G~~t~~la~-~~~~~~v~a~D~s~~~l~~~~~n~~~~g-~--~~~~~~~D~~~~~~~~~~~~fD~ 316 (427)
T PRK10901 242 PQNGERVLDACAAP-GGKTAHILE-LAPQAQVVALDIDAQRLERVRENLQRLG-L--KATVIVGDARDPAQWWDGQPFDR 316 (427)
T ss_pred CCCCCEEEEeCCCC-ChHHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHHHHcC-C--CeEEEEcCcccchhhcccCCCCE
Confidence 46789999999995 555666666 3455899999999999999999998865 3 47899999976422 1257999
Q ss_pred EEEcCcCCC--------------CH-------HHHHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALVGM--------------SK-------EEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~--------------~~-------~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+++++... .. ....++++.+.+.|||||++++.+
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 999875421 11 123579999999999999999866
No 111
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.21 E-value=1.9e-10 Score=108.67 Aligned_cols=109 Identities=19% Similarity=0.196 Sum_probs=83.5
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCC-CCeEEEEcchhhhhcc----CCCc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFE-KRMKFLTGDILQVKEK----LGEY 203 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~-~~v~~~~~D~~~~~~~----l~~f 203 (284)
.++++|||+||| +|..++..+. .+..+|+++|+|+.+++.|+++++..+ ++ ++++++++|+.+.... -++|
T Consensus 219 ~~g~rVLDlfsg-tG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ng-l~~~~v~~i~~D~~~~l~~~~~~~~~f 294 (396)
T PRK15128 219 VENKRVLNCFSY-TGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNK-LDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_pred cCCCeEEEeccC-CCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCcEEEEEccHHHHHHHHHhcCCCC
Confidence 467899999999 7877776665 244589999999999999999988744 54 4799999999886533 2579
Q ss_pred cEEEEcCcCCCC-HH-------HHHHHHHHHHhccccCcEEEEEec
Q 039591 204 DCIFLAALVGMS-KE-------EKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 204 D~V~~~~~~~~~-~~-------~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
|+|+++++.... .. .-.++++.+.+.|+|||.++..+.
T Consensus 295 DlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 999999875211 11 124556678899999999998764
No 112
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.20 E-value=2e-10 Score=103.37 Aligned_cols=110 Identities=18% Similarity=0.301 Sum_probs=85.6
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccC-C-CCCeEEEEcchhhhhccC-CCccE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFE-F-EKRMKFLTGDILQVKEKL-GEYDC 205 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~-l-~~~v~~~~~D~~~~~~~l-~~fD~ 205 (284)
..+++||+|||| .|..+..+++ +.+..+++++|+|+++++.|++.+...++ + ..+++++.+|+.+..... ++||+
T Consensus 71 ~~p~~VL~iG~G-~G~~~~~ll~-~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 71 PNPKHVLVIGGG-DGGVLREVLK-HKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCCEEEEEcCC-chHHHHHHHh-CCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence 567799999999 8888888877 44467899999999999999998755321 1 357999999988755433 68999
Q ss_pred EEEcCcCCCCH-HH--HHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALVGMSK-EE--KMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~~~-~~--k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+++....... .. ..++++.+.+.|+|||++++..
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 99987532211 11 4688999999999999999865
No 113
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.20 E-value=2.1e-10 Score=102.86 Aligned_cols=108 Identities=27% Similarity=0.355 Sum_probs=84.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.++.+|||+||| .|..++.+++ ..+..+|+++|+|+.+++.|+++++. . ...+++++++|+.+... .++||+|++
T Consensus 107 ~~~~~vLDiG~G-sG~~~~~la~-~~~~~~v~~iDis~~~l~~a~~n~~~-~-~~~~i~~~~~d~~~~~~-~~~fD~Iv~ 181 (275)
T PRK09328 107 KEPLRVLDLGTG-SGAIALALAK-ERPDAEVTAVDISPEALAVARRNAKH-G-LGARVEFLQGDWFEPLP-GGRFDLIVS 181 (275)
T ss_pred cCCCEEEEEcCc-HHHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHh-C-CCCcEEEEEccccCcCC-CCceeEEEE
Confidence 567899999999 8999999998 56789999999999999999999872 2 24689999999865321 268999999
Q ss_pred cCcCCCC-------H------------------HHHHHHHHHHHhccccCcEEEEEec
Q 039591 209 AALVGMS-------K------------------EEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 209 ~~~~~~~-------~------------------~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
+.+.... + +.-..+++++.+.|+|||.+++...
T Consensus 182 npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 182 NPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG 239 (275)
T ss_pred CCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 7643210 0 1125688888899999999998653
No 114
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.20 E-value=2.3e-10 Score=109.91 Aligned_cols=110 Identities=20% Similarity=0.234 Sum_probs=84.5
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC-CCccEE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL-GEYDCI 206 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l-~~fD~V 206 (284)
..++.+|||+||| .|..++.+++...++++|+++|+++.+++.+++++++.| + .+++++++|+.+....+ +.||+|
T Consensus 248 ~~~g~~VLDlgaG-~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-~-~~v~~~~~D~~~~~~~~~~~fD~V 324 (444)
T PRK14902 248 PKGGDTVLDACAA-PGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-L-TNIETKALDARKVHEKFAEKFDKI 324 (444)
T ss_pred CCCCCEEEEeCCC-CCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CeEEEEeCCcccccchhcccCCEE
Confidence 3677899999999 566666777623356899999999999999999998866 4 35999999998653223 689999
Q ss_pred EEcCcC---CC-----------CHH-------HHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALV---GM-----------SKE-------EKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~---~~-----------~~~-------~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+++++. |. ... ...++++++.+.|||||++++.+
T Consensus 325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 998753 11 001 12568999999999999999765
No 115
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.19 E-value=4.1e-10 Score=98.68 Aligned_cols=104 Identities=19% Similarity=0.279 Sum_probs=83.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc-cCCCccEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE-KLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~-~l~~fD~V~ 207 (284)
.++.+||||||| .|..+..+++ .+.+++++|+++.+++.|++++...+ .+++++.+|+.+... ..+.||+|+
T Consensus 47 ~~~~~vLdiG~G-~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~fD~Ii 119 (233)
T PRK05134 47 LFGKRVLDVGCG-GGILSESMAR---LGADVTGIDASEENIEVARLHALESG---LKIDYRQTTAEELAAEHPGQFDVVT 119 (233)
T ss_pred CCCCeEEEeCCC-CCHHHHHHHH---cCCeEEEEcCCHHHHHHHHHHHHHcC---CceEEEecCHHHhhhhcCCCccEEE
Confidence 567899999999 7888888887 46789999999999999999876643 368888898876542 227899999
Q ss_pred EcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+....... .+...+++.+.+.|+|||.+++..
T Consensus 120 ~~~~l~~~-~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 120 CMEMLEHV-PDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred EhhHhhcc-CCHHHHHHHHHHHcCCCcEEEEEe
Confidence 87654332 355789999999999999998764
No 116
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.19 E-value=4.6e-10 Score=83.44 Aligned_cols=102 Identities=21% Similarity=0.339 Sum_probs=82.3
Q ss_pred eEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc-cCCCccEEEEcCc
Q 039591 133 KVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE-KLGEYDCIFLAAL 211 (284)
Q Consensus 133 ~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~-~l~~fD~V~~~~~ 211 (284)
+|+|+||| .|..+..+++ .++.+++++|+++.+++.+++..... ...+++++.+|+.+... ..++||+|+.+..
T Consensus 1 ~ildig~G-~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCG-TGALALALAS--GPGARVTGVDISPVALELARKAAAAL--LADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCC-ccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcc--cccceEEEEcChhhhccccCCceEEEEEccc
Confidence 58999999 6888888876 46789999999999999999644332 23679999999987653 3478999999887
Q ss_pred CCCCHHHHHHHHHHHHhccccCcEEEEE
Q 039591 212 VGMSKEEKMKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 212 ~~~~~~~k~~~l~~~~~~L~pGG~lv~~ 239 (284)
..........+++.+.+.++|||.+++.
T Consensus 76 ~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 6442467789999999999999999875
No 117
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.17 E-value=3.4e-10 Score=108.24 Aligned_cols=111 Identities=16% Similarity=0.157 Sum_probs=82.0
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc--cCCCcc
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE--KLGEYD 204 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~--~l~~fD 204 (284)
...++.+|||+||||.| .+..+++ ..++++|+++|+++.+++.+++++++.| +...+++..+|...... ..+.||
T Consensus 235 ~~~~g~~VLDlcag~G~-kt~~la~-~~~~~~v~a~D~~~~~l~~~~~n~~r~g-~~~~v~~~~~d~~~~~~~~~~~~fD 311 (426)
T TIGR00563 235 APQNEETILDACAAPGG-KTTHILE-LAPQAQVVALDIHEHRLKRVYENLKRLG-LTIKAETKDGDGRGPSQWAENEQFD 311 (426)
T ss_pred CCCCCCeEEEeCCCccH-HHHHHHH-HcCCCeEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEeccccccccccccccccC
Confidence 34678999999999655 5556665 3457899999999999999999999866 44345557777654322 236799
Q ss_pred EEEEcCcC---CC---CH---------------HHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALV---GM---SK---------------EEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~---~~---~~---------------~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.|+++++. |. .+ ....++++++++.|||||++++.+
T Consensus 312 ~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 312 RILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred EEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99998643 21 11 114689999999999999999876
No 118
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.17 E-value=3.2e-10 Score=114.54 Aligned_cols=108 Identities=16% Similarity=0.214 Sum_probs=86.5
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCC-CCeEEEEcchhhhhccC-CCccEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFE-KRMKFLTGDILQVKEKL-GEYDCI 206 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~-~~v~~~~~D~~~~~~~l-~~fD~V 206 (284)
.++++|||+||| +|..++.+++ .+..+|+++|+|+.+++.|+++++..+ ++ .+++|+++|+.+....+ ++||+|
T Consensus 537 ~~g~rVLDlf~g-tG~~sl~aa~--~Ga~~V~~vD~s~~al~~a~~N~~~ng-~~~~~v~~i~~D~~~~l~~~~~~fDlI 612 (702)
T PRK11783 537 AKGKDFLNLFAY-TGTASVHAAL--GGAKSTTTVDMSNTYLEWAERNFALNG-LSGRQHRLIQADCLAWLKEAREQFDLI 612 (702)
T ss_pred cCCCeEEEcCCC-CCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHhC-CCccceEEEEccHHHHHHHcCCCcCEE
Confidence 357899999999 8999999997 233479999999999999999998744 54 58999999998765433 689999
Q ss_pred EEcCcCCCC----------HHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMS----------KEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~----------~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+++.+.-.. ..+-.+++..+.+.|+|||++++.+
T Consensus 613 ilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 613 FIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred EECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 999764110 1223678889999999999998866
No 119
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.17 E-value=3.6e-10 Score=108.64 Aligned_cols=108 Identities=18% Similarity=0.178 Sum_probs=83.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.++++|||+|||| |..++.+++....+++|+++|+|+.+++.++++++..| + .+++++++|+.+.. ..+.||+|++
T Consensus 249 ~~g~~VLDlgaG~-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-~-~~v~~~~~Da~~~~-~~~~fD~Vl~ 324 (445)
T PRK14904 249 QPGSTVLDLCAAP-GGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-I-TIIETIEGDARSFS-PEEQPDAILL 324 (445)
T ss_pred CCCCEEEEECCCC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-C-CeEEEEeCcccccc-cCCCCCEEEE
Confidence 6778999999995 55666666623345799999999999999999998866 4 47999999997653 2257999999
Q ss_pred cCcC---CC-----------CH-------HHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALV---GM-----------SK-------EEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~---~~-----------~~-------~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+++. |. .. ....+++.++.+.|||||++++.+
T Consensus 325 D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 325 DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 8643 11 11 123579999999999999999977
No 120
>PTZ00146 fibrillarin; Provisional
Probab=99.17 E-value=6.1e-10 Score=100.38 Aligned_cols=146 Identities=10% Similarity=0.048 Sum_probs=95.5
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh---ccCCCc
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK---EKLGEY 203 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~---~~l~~f 203 (284)
...++++|||+||| .|.++..++....+...|+++|+++.+.+...+.+.. ..++.++.+|+.... ...+.|
T Consensus 129 ~IkpG~~VLDLGaG-~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~----r~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 129 PIKPGSKVLYLGAA-SGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK----RPNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred ccCCCCEEEEeCCc-CCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh----cCCCEEEECCccChhhhhcccCCC
Confidence 34788999999999 7888889998444467999999999876555544332 146889999986421 123679
Q ss_pred cEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe-ccchhhhcCCCCCC-----CCC--CCcEEEEEEcCCC-ceee
Q 039591 204 DCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS-AKGARAFLYPVVER-----HDL--LDFEVLSIFHPID-EVIN 274 (284)
Q Consensus 204 D~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~-~~g~~~~lyp~v~~-----~~l--~gf~~~~~~~p~~-~v~n 274 (284)
|+||++... +.+...++.++.+.|||||.+++.- +... ..-.|+-+. +.+ .||+++..++..+ ..-.
T Consensus 204 DvV~~Dva~---pdq~~il~~na~r~LKpGG~~vI~ika~~i-d~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~h 279 (293)
T PTZ00146 204 DVIFADVAQ---PDQARIVALNAQYFLKNGGHFIISIKANCI-DSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDH 279 (293)
T ss_pred CEEEEeCCC---cchHHHHHHHHHHhccCCCEEEEEEecccc-ccCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCCc
Confidence 999998742 2344556678999999999999832 1111 111111111 123 5899888766443 3334
Q ss_pred EEEEEee
Q 039591 275 SVILVRK 281 (284)
Q Consensus 275 svi~~rk 281 (284)
++|+++.
T Consensus 280 ~~v~~~~ 286 (293)
T PTZ00146 280 AVVIGVY 286 (293)
T ss_pred EEEEEEE
Confidence 5666655
No 121
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.16 E-value=9.7e-10 Score=95.86 Aligned_cols=103 Identities=17% Similarity=0.281 Sum_probs=79.6
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
..++.+||||||| .|..+..+++ .+.+|+++|+|+.+++.|+++....+ ...+++|..+|+.. ..+.||+|+
T Consensus 61 ~~~~~~vLDvGcG-~G~~~~~l~~---~~~~v~~~D~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~~~---~~~~fD~v~ 132 (230)
T PRK07580 61 DLTGLRILDAGCG-VGSLSIPLAR---RGAKVVASDISPQMVEEARERAPEAG-LAGNITFEVGDLES---LLGRFDTVV 132 (230)
T ss_pred CCCCCEEEEEeCC-CCHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHhcC-CccCcEEEEcCchh---ccCCcCEEE
Confidence 3567899999999 8999999987 35679999999999999999887644 34689999999532 236899999
Q ss_pred EcCcC-CCCHHHHHHHHHHHHhccccCcEEEE
Q 039591 208 LAALV-GMSKEEKMKIIRHIRKYMKDGGILLV 238 (284)
Q Consensus 208 ~~~~~-~~~~~~k~~~l~~~~~~L~pGG~lv~ 238 (284)
+.... +...++...+++.+.+.+++|+++.+
T Consensus 133 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 133 CLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred EcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 87654 44455667888888887765555443
No 122
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.16 E-value=1.5e-10 Score=99.75 Aligned_cols=142 Identities=20% Similarity=0.248 Sum_probs=103.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCccE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEYDC 205 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~fD~ 205 (284)
+.+.+|||.++| +|+||+..++ .|+ +|+.+|.||..+++|.-|--+-+..+..++++.||+.+...++ +.||+
T Consensus 133 ~~G~rVLDtC~G-LGYtAi~a~~---rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDa 208 (287)
T COG2521 133 KRGERVLDTCTG-LGYTAIEALE---RGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDA 208 (287)
T ss_pred ccCCEeeeeccC-ccHHHHHHHH---cCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccce
Confidence 579999999999 9999999887 566 9999999999999998774443333457899999999987665 67999
Q ss_pred EEEcCcCCC--CHHHHHHHHHHHHhccccCcEEEEEe-ccchhhhcCCCCCCC-----CC--CCcEEEEEEcCCCceeeE
Q 039591 206 IFLAALVGM--SKEEKMKIIRHIRKYMKDGGILLVRS-AKGARAFLYPVVERH-----DL--LDFEVLSIFHPIDEVINS 275 (284)
Q Consensus 206 V~~~~~~~~--~~~~k~~~l~~~~~~L~pGG~lv~~~-~~g~~~~lyp~v~~~-----~l--~gf~~~~~~~p~~~v~ns 275 (284)
|+-+.+--. ..--..++++++++.|||||.+.--. ..|- .|--.|.. .| .||+++....-...
T Consensus 209 IiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~---ryrG~d~~~gVa~RLr~vGF~~v~~~~~~~g---- 281 (287)
T COG2521 209 IIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK---RYRGLDLPKGVAERLRRVGFEVVKKVREALG---- 281 (287)
T ss_pred EeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc---ccccCChhHHHHHHHHhcCceeeeeehhccc----
Confidence 998875311 12345899999999999999988544 2231 12222221 23 69998877655432
Q ss_pred EEEEeec
Q 039591 276 VILVRKP 282 (284)
Q Consensus 276 vi~~rk~ 282 (284)
|+|+||
T Consensus 282 -v~A~k~ 287 (287)
T COG2521 282 -VVAVKP 287 (287)
T ss_pred -eEEecC
Confidence 456654
No 123
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.15 E-value=2.9e-10 Score=108.90 Aligned_cols=110 Identities=17% Similarity=0.149 Sum_probs=84.1
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc----cCCCc
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE----KLGEY 203 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~----~l~~f 203 (284)
..++++|||+|||| |..++.+++.....++|+++|+++.+++.++++++..| + .+++++++|+.+... ..+.|
T Consensus 250 ~~~g~~VLDl~ag~-G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-~-~~v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 250 PQPGEVILDACAAP-GGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-L-KSIKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred CCCcCEEEEeCCCC-chhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-C-CeEEEEeCChhhcccccccccccC
Confidence 46789999999995 54555666623345799999999999999999998876 4 469999999986531 12579
Q ss_pred cEEEEcCcC---CC---CH--------H-------HHHHHHHHHHhccccCcEEEEEe
Q 039591 204 DCIFLAALV---GM---SK--------E-------EKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 204 D~V~~~~~~---~~---~~--------~-------~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|.|+++++. |. .+ . ...++++++.+.|||||+|++.+
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 999998653 11 11 1 14689999999999999999865
No 124
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.15 E-value=2.9e-10 Score=100.96 Aligned_cols=110 Identities=20% Similarity=0.297 Sum_probs=85.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccC--CCCCeEEEEcchhhhhccC-C-Ccc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFE--FEKRMKFLTGDILQVKEKL-G-EYD 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~--l~~~v~~~~~D~~~~~~~l-~-~fD 204 (284)
+.+++||.||.| .|.++..+.+ +.+..+|+.+|+||..++.|++.+..... -+.|++++.+|+....... + +||
T Consensus 75 ~~p~~VLiiGgG-~G~~~~ell~-~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGG-DGGTARELLK-HPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEEST-TSHHHHHHTT-STT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCcCceEEEcCC-Chhhhhhhhh-cCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCccc
Confidence 579999999999 8988888887 54567999999999999999998765321 1479999999999876655 4 799
Q ss_pred EEEEcCcCCCCHHH---HHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGMSKEE---KMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~~~~~---k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+|+++..-...+.. ..++++.+.+.|+|||++++..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 99998754221111 3789999999999999999876
No 125
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.14 E-value=2.8e-09 Score=89.14 Aligned_cols=102 Identities=15% Similarity=0.146 Sum_probs=78.2
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
..++++|||+||| .|..+..+++ .+.+|+++|+|+.+++.+++++.. ..+++++.+|+.+.......||.|+
T Consensus 11 ~~~~~~vLEiG~G-~G~lt~~l~~---~~~~v~~vE~~~~~~~~~~~~~~~----~~~v~ii~~D~~~~~~~~~~~d~vi 82 (169)
T smart00650 11 LRPGDTVLEIGPG-KGALTEELLE---RAARVTAIEIDPRLAPRLREKFAA----ADNLTVIHGDALKFDLPKLQPYKVV 82 (169)
T ss_pred CCCcCEEEEECCC-ccHHHHHHHh---cCCeEEEEECCHHHHHHHHHHhcc----CCCEEEEECchhcCCccccCCCEEE
Confidence 3667899999999 8988988887 368999999999999999998754 2579999999987643334699999
Q ss_pred EcCcCCCCHHHHHHHHHHHHhc--cccCcEEEEEec
Q 039591 208 LAALVGMSKEEKMKIIRHIRKY--MKDGGILLVRSA 241 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~--L~pGG~lv~~~~ 241 (284)
.+.+.+.. ..++..+.+. +.++|.+++...
T Consensus 83 ~n~Py~~~----~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 83 GNLPYNIS----TPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred ECCCcccH----HHHHHHHHhcCCCcceEEEEEEHH
Confidence 99877544 3344444432 458888888763
No 126
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.14 E-value=4.7e-10 Score=108.58 Aligned_cols=104 Identities=26% Similarity=0.319 Sum_probs=82.5
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh--ccCCCccEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK--EKLGEYDCI 206 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~--~~l~~fD~V 206 (284)
.++.+||||||| .|..+..+++ .+.+|+++|+++.+++.+++... ...+++++++|+.+.. .+.+.||+|
T Consensus 36 ~~~~~vLDlGcG-~G~~~~~la~---~~~~v~giD~s~~~l~~a~~~~~----~~~~i~~~~~d~~~~~~~~~~~~fD~I 107 (475)
T PLN02336 36 YEGKSVLELGAG-IGRFTGELAK---KAGQVIALDFIESVIKKNESING----HYKNVKFMCADVTSPDLNISDGSVDLI 107 (475)
T ss_pred cCCCEEEEeCCC-cCHHHHHHHh---hCCEEEEEeCCHHHHHHHHHHhc----cCCceEEEEecccccccCCCCCCEEEE
Confidence 456799999999 8999999998 35799999999999998876432 2367999999986422 223689999
Q ss_pred EEcCcC-CCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALV-GMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~-~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
++.... ....++..++++++.+.|||||++++..
T Consensus 108 ~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 108 FSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred ehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 987654 3344556899999999999999999865
No 127
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.14 E-value=8.1e-10 Score=94.96 Aligned_cols=106 Identities=11% Similarity=0.083 Sum_probs=79.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC-CCccEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL-GEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l-~~fD~V~ 207 (284)
..+.+|||+||| +|..++.++. ....+|+++|+++.+++.|+++++..+ + .+++++++|+.+..... +.||+|+
T Consensus 52 ~~~~~vLDl~~G-sG~l~l~~ls--r~a~~V~~vE~~~~a~~~a~~Nl~~~~-~-~~v~~~~~D~~~~l~~~~~~fDlV~ 126 (199)
T PRK10909 52 IVDARCLDCFAG-SGALGLEALS--RYAAGATLLEMDRAVAQQLIKNLATLK-A-GNARVVNTNALSFLAQPGTPHNVVF 126 (199)
T ss_pred cCCCEEEEcCCC-ccHHHHHHHH--cCCCEEEEEECCHHHHHHHHHHHHHhC-C-CcEEEEEchHHHHHhhcCCCceEEE
Confidence 456899999999 9998886443 145799999999999999999998865 3 47999999998754322 4699999
Q ss_pred EcCcCCCCHHHHHHHHHHHHh--ccccCcEEEEEec
Q 039591 208 LAALVGMSKEEKMKIIRHIRK--YMKDGGILLVRSA 241 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~--~L~pGG~lv~~~~ 241 (284)
++.+... .-...+++.+.+ .++|++++++...
T Consensus 127 ~DPPy~~--g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 127 VDPPFRK--GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred ECCCCCC--ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 9998421 112344555544 4899999998763
No 128
>PRK03612 spermidine synthase; Provisional
Probab=99.12 E-value=5e-10 Score=109.56 Aligned_cols=109 Identities=20% Similarity=0.314 Sum_probs=84.2
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCC-cEEEEEeCCHHHHHHHHHH--Hhhcc--CC-CCCeEEEEcchhhhhccC-C
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKA-THFDNFDIDEAANNVARRI--VATDF--EF-EKRMKFLTGDILQVKEKL-G 201 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~-~~V~~vDis~~~~~~A~~~--~~~~~--~l-~~~v~~~~~D~~~~~~~l-~ 201 (284)
+++++||+||+| .|..+..+++ + ++ .+|+++|+|+++++.|+++ +...+ .+ +.+++++.+|+.+..... +
T Consensus 296 ~~~~rVL~IG~G-~G~~~~~ll~-~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~ 372 (521)
T PRK03612 296 ARPRRVLVLGGG-DGLALREVLK-Y-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAE 372 (521)
T ss_pred CCCCeEEEEcCC-ccHHHHHHHh-C-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCC
Confidence 568899999999 8999988887 3 54 7999999999999999994 22211 11 368999999998865433 7
Q ss_pred CccEEEEcCcCCCCH----HHHHHHHHHHHhccccCcEEEEEe
Q 039591 202 EYDCIFLAALVGMSK----EEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 202 ~fD~V~~~~~~~~~~----~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+||+|+++......+ --..++++.+.++|+|||++++..
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 899999986432211 112579999999999999999865
No 129
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.12 E-value=9.1e-10 Score=99.27 Aligned_cols=110 Identities=20% Similarity=0.297 Sum_probs=90.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhcc--CCCCCeEEEEcchhhhhccC-CCccE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDF--EFEKRMKFLTGDILQVKEKL-GEYDC 205 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~--~l~~~v~~~~~D~~~~~~~l-~~fD~ 205 (284)
+.+++||.||.| .|.++..+.+ +.+-.+++.+|+|++.++.||+.+.... ..+.|++++.+|..++..+. ++||+
T Consensus 75 ~~pk~VLiiGgG-dG~tlRevlk-h~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 75 PNPKRVLIIGGG-DGGTLREVLK-HLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCCCeEEEECCC-ccHHHHHHHh-cCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence 455799999999 8989999998 6777899999999999999999987543 12489999999999887655 57999
Q ss_pred EEEcCcCCCCH---HHHHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALVGMSK---EEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~~~---~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+++..-+.-+ --..++++.+.+.|+++|+++..+
T Consensus 153 Ii~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 153 IIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred EEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 99987543111 113799999999999999999984
No 130
>PLN02823 spermine synthase
Probab=99.12 E-value=7e-10 Score=102.51 Aligned_cols=110 Identities=19% Similarity=0.279 Sum_probs=85.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhcc-C-CCCCeEEEEcchhhhhccC-CCccE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDF-E-FEKRMKFLTGDILQVKEKL-GEYDC 205 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~-~-l~~~v~~~~~D~~~~~~~l-~~fD~ 205 (284)
..+++||.||+| .|.++..+.+ +.+..+|+.+|+|++.++.|++.+...+ . -+.+++++.+|+.+..... ++||+
T Consensus 102 ~~pk~VLiiGgG-~G~~~re~l~-~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 102 PNPKTVFIMGGG-EGSTAREVLR-HKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCCEEEEECCC-chHHHHHHHh-CCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccE
Confidence 567899999999 9999988887 4556789999999999999999875321 1 1478999999999876443 68999
Q ss_pred EEEcCcCCC--CHH---HHHHHHH-HHHhccccCcEEEEEe
Q 039591 206 IFLAALVGM--SKE---EKMKIIR-HIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~--~~~---~k~~~l~-~~~~~L~pGG~lv~~~ 240 (284)
|+++..-.. .+. -..++++ .+.+.|+|||++++..
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 999963311 001 1357888 8999999999998764
No 131
>PRK05785 hypothetical protein; Provisional
Probab=99.11 E-value=3.7e-10 Score=99.05 Aligned_cols=91 Identities=16% Similarity=0.121 Sum_probs=73.8
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEc
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLA 209 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~ 209 (284)
++.+|||+||| +|..+..+++ .. +.+|+++|+|++|++.|++. . .++++|+.+.+...+.||+|++.
T Consensus 51 ~~~~VLDlGcG-tG~~~~~l~~-~~-~~~v~gvD~S~~Ml~~a~~~----~------~~~~~d~~~lp~~d~sfD~v~~~ 117 (226)
T PRK05785 51 RPKKVLDVAAG-KGELSYHFKK-VF-KYYVVALDYAENMLKMNLVA----D------DKVVGSFEALPFRDKSFDVVMSS 117 (226)
T ss_pred CCCeEEEEcCC-CCHHHHHHHH-hc-CCEEEEECCCHHHHHHHHhc----c------ceEEechhhCCCCCCCEEEEEec
Confidence 47899999999 8998989987 33 67999999999999999863 1 24678888765555889999998
Q ss_pred CcCCCCHHHHHHHHHHHHhccccCc
Q 039591 210 ALVGMSKEEKMKIIRHIRKYMKDGG 234 (284)
Q Consensus 210 ~~~~~~~~~k~~~l~~~~~~L~pGG 234 (284)
....+. ++..+.++++.++|||+.
T Consensus 118 ~~l~~~-~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 118 FALHAS-DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred Chhhcc-CCHHHHHHHHHHHhcCce
Confidence 755433 577899999999999954
No 132
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.10 E-value=4e-09 Score=96.95 Aligned_cols=101 Identities=15% Similarity=0.120 Sum_probs=78.1
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC-CCccEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL-GEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l-~~fD~V~ 207 (284)
.++.+|||+||| .|..++.+|+ ++.+|+++|+++.+++.|+++++..+ + .+++|+++|+.+..... +.||+|+
T Consensus 172 ~~~~~VLDl~cG-~G~~sl~la~---~~~~V~gvD~s~~av~~A~~n~~~~~-l-~~v~~~~~D~~~~~~~~~~~~D~Vv 245 (315)
T PRK03522 172 LPPRSMWDLFCG-VGGFGLHCAT---PGMQLTGIEISAEAIACAKQSAAELG-L-TNVQFQALDSTQFATAQGEVPDLVL 245 (315)
T ss_pred cCCCEEEEccCC-CCHHHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEEcCHHHHHHhcCCCCeEEE
Confidence 357899999999 8999999998 56899999999999999999998755 4 57999999998754322 5799999
Q ss_pred EcCcC-CCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALV-GMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~-~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
++.+. |.. ..+.+.+. .++|++++.+..
T Consensus 246 ~dPPr~G~~----~~~~~~l~-~~~~~~ivyvsc 274 (315)
T PRK03522 246 VNPPRRGIG----KELCDYLS-QMAPRFILYSSC 274 (315)
T ss_pred ECCCCCCcc----HHHHHHHH-HcCCCeEEEEEC
Confidence 99765 222 33444443 467776665543
No 133
>PLN02672 methionine S-methyltransferase
Probab=99.10 E-value=8.7e-10 Score=114.38 Aligned_cols=111 Identities=23% Similarity=0.187 Sum_probs=86.2
Q ss_pred CCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhcc--------------CCCCCeEEEEcchhhh
Q 039591 131 PKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDF--------------EFEKRMKFLTGDILQV 196 (284)
Q Consensus 131 ~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~--------------~l~~~v~~~~~D~~~~ 196 (284)
+.+|||+||| .|..++.+++ ..+..+|+++|+|+.+++.|++|++..+ .+.++++|+++|+.+.
T Consensus 119 ~~~VLDlG~G-SG~Iai~La~-~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~ 196 (1082)
T PLN02672 119 DKTVAELGCG-NGWISIAIAE-KWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY 196 (1082)
T ss_pred CCEEEEEecc-hHHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh
Confidence 4689999999 9999999998 5677899999999999999999987632 1225799999999875
Q ss_pred hccC-CCccEEEEcCcCC-------CCHHH------------------------------HHHHHHHHHhccccCcEEEE
Q 039591 197 KEKL-GEYDCIFLAALVG-------MSKEE------------------------------KMKIIRHIRKYMKDGGILLV 238 (284)
Q Consensus 197 ~~~l-~~fD~V~~~~~~~-------~~~~~------------------------------k~~~l~~~~~~L~pGG~lv~ 238 (284)
.... .+||+|+++.+.- +.++- -.+++.++.++|+|||.+++
T Consensus 197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 4332 3699999987531 11100 15678888899999999999
Q ss_pred Eeccc
Q 039591 239 RSAKG 243 (284)
Q Consensus 239 ~~~~g 243 (284)
..+..
T Consensus 277 EiG~~ 281 (1082)
T PLN02672 277 NMGGR 281 (1082)
T ss_pred EECcc
Confidence 87544
No 134
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.09 E-value=9.5e-10 Score=95.62 Aligned_cols=105 Identities=21% Similarity=0.281 Sum_probs=83.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC-CCccEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL-GEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l-~~fD~V~ 207 (284)
..+.+|||+||| .|..+..+++ .+.+++++|+++.+++.++++....+ . .++++.++|+.+..... ++||+|+
T Consensus 44 ~~~~~vLdlG~G-~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 44 LFGLRVLDVGCG-GGLLSEPLAR---LGANVTGIDASEENIEVAKLHAKKDP-L-LKIEYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCCeEEEECCC-CCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEeCCHHHhhcCCCCCccEEE
Confidence 347899999999 8888888887 35679999999999999999877633 1 26899999988765433 6899999
Q ss_pred EcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+....+.. .+...+++.+.+.|+|||.+++..
T Consensus 118 ~~~~l~~~-~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 118 CMEVLEHV-PDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred ehhHHHhC-CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 87654322 345789999999999999988765
No 135
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.08 E-value=3.2e-09 Score=97.42 Aligned_cols=103 Identities=18% Similarity=0.233 Sum_probs=76.3
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccC---CCCCeEEEEcchhhhhccCCCccE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFE---FEKRMKFLTGDILQVKEKLGEYDC 205 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~---l~~~v~~~~~D~~~~~~~l~~fD~ 205 (284)
.++.+|||+||| .|..++.+++ .+.+|+++|+|+.|++.|+++.+..+. ...+++|.++|+.+. .+.||+
T Consensus 143 ~~~~~VLDlGcG-tG~~a~~la~---~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~ 215 (315)
T PLN02585 143 LAGVTVCDAGCG-TGSLAIPLAL---EGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDT 215 (315)
T ss_pred CCCCEEEEecCC-CCHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCE
Confidence 357899999999 8999999998 478999999999999999998765310 124688999997643 268999
Q ss_pred EEEcCcC-CCCHHHHHHHHHHHHhccccCcEEEEE
Q 039591 206 IFLAALV-GMSKEEKMKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 206 V~~~~~~-~~~~~~k~~~l~~~~~~L~pGG~lv~~ 239 (284)
|++.... +...+....+++.+.+ +.+|++++..
T Consensus 216 Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~ 249 (315)
T PLN02585 216 VTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISF 249 (315)
T ss_pred EEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEe
Confidence 9976544 3333344567777774 5667666643
No 136
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.06 E-value=3.5e-09 Score=95.24 Aligned_cols=114 Identities=15% Similarity=0.123 Sum_probs=81.9
Q ss_pred HHHHhhc-cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc
Q 039591 121 RILKENG-VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK 199 (284)
Q Consensus 121 ~~l~~~~-~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~ 199 (284)
+.+..+. .-.+++||||||| .|+-+..+++ .....|+|+|.++....+.+-...-+| ....+.+..--+.+...
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~-nGY~~frM~~--~GA~~ViGiDP~~lf~~QF~~i~~~lg-~~~~~~~lplgvE~Lp~- 179 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCN-NGYYSFRMLG--RGAKSVIGIDPSPLFYLQFEAIKHFLG-QDPPVFELPLGVEDLPN- 179 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCC-CcHHHHHHhh--cCCCEEEEECCChHHHHHHHHHHHHhC-CCccEEEcCcchhhccc-
Confidence 3344443 4688999999999 9999999987 344579999999988877665443333 22233333234444433
Q ss_pred CCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 200 LGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 200 l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.+.||+||+.+...+- .+....++++.+.|+|||.+++.+
T Consensus 180 ~~~FDtVF~MGVLYHr-r~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 180 LGAFDTVFSMGVLYHR-RSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred cCCcCEEEEeeehhcc-CCHHHHHHHHHHhhCCCCEEEEEE
Confidence 6899999998855332 455889999999999999999877
No 137
>PRK06202 hypothetical protein; Provisional
Probab=99.06 E-value=1.8e-09 Score=94.73 Aligned_cols=102 Identities=14% Similarity=0.107 Sum_probs=74.1
Q ss_pred CCCCeEEEecCCCChHHHHHHHhh---cCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKN---HLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDC 205 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~---~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~ 205 (284)
.++.+|||+||| .|..+..+++. ..++.+|+++|+|+.+++.|++.... .++++..+++.+.....+.||+
T Consensus 59 ~~~~~iLDlGcG-~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~~~~~~~~~l~~~~~~fD~ 132 (232)
T PRK06202 59 DRPLTLLDIGCG-GGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-----PGVTFRQAVSDELVAEGERFDV 132 (232)
T ss_pred CCCcEEEEeccC-CCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-----CCCeEEEEecccccccCCCccE
Confidence 567899999999 78887777752 12456999999999999999987543 3456666665443333368999
Q ss_pred EEEcCcCC-CCHHHHHHHHHHHHhccccCcEEE
Q 039591 206 IFLAALVG-MSKEEKMKIIRHIRKYMKDGGILL 237 (284)
Q Consensus 206 V~~~~~~~-~~~~~k~~~l~~~~~~L~pGG~lv 237 (284)
|+++...+ ...++...+++++.+.++ |++++
T Consensus 133 V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i 164 (232)
T PRK06202 133 VTSNHFLHHLDDAEVVRLLADSAALAR-RLVLH 164 (232)
T ss_pred EEECCeeecCChHHHHHHHHHHHHhcC-eeEEE
Confidence 99986553 344456789999999988 44443
No 138
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.04 E-value=9.2e-09 Score=98.85 Aligned_cols=137 Identities=15% Similarity=0.198 Sum_probs=93.5
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc----CCCcc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK----LGEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~----l~~fD 204 (284)
.++.+|||+||| .|..++.+++ .+.+|+++|+|++|++.|+++++..+ + ++++|+++|+.+.... .+.||
T Consensus 296 ~~~~~VLDlgcG-tG~~sl~la~---~~~~V~gvD~s~~al~~A~~n~~~~~-~-~~v~~~~~d~~~~l~~~~~~~~~fD 369 (443)
T PRK13168 296 QPGDRVLDLFCG-LGNFTLPLAR---QAAEVVGVEGVEAMVERARENARRNG-L-DNVTFYHANLEEDFTDQPWALGGFD 369 (443)
T ss_pred CCCCEEEEEecc-CCHHHHHHHH---hCCEEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEEeChHHhhhhhhhhcCCCC
Confidence 567899999999 8999999998 35799999999999999999988755 3 5799999999764322 15699
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEeccchhhhcCCCCCCCCC--CCcEEEEE--E--cCCCceeeEEEE
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSAKGARAFLYPVVERHDL--LDFEVLSI--F--HPIDEVINSVIL 278 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~~g~~~~lyp~v~~~~l--~gf~~~~~--~--~p~~~v~nsvi~ 278 (284)
+|+++.+..-. .+.++.+.+ ++|++++.+.-.. .++- - |...+ .||++... + =|....+=+|++
T Consensus 370 ~Vi~dPPr~g~----~~~~~~l~~-~~~~~ivyvSCnp--~tla-R--Dl~~L~~~gY~l~~i~~~DmFP~T~HvE~v~l 439 (443)
T PRK13168 370 KVLLDPPRAGA----AEVMQALAK-LGPKRIVYVSCNP--ATLA-R--DAGVLVEAGYRLKRAGMLDMFPHTGHVESMAL 439 (443)
T ss_pred EEEECcCCcCh----HHHHHHHHh-cCCCeEEEEEeCh--HHhh-c--cHHHHhhCCcEEEEEEEeccCCCCCcEEEEEE
Confidence 99999875211 345566654 6888877765410 0110 0 00112 46776543 2 254456666666
Q ss_pred Eee
Q 039591 279 VRK 281 (284)
Q Consensus 279 ~rk 281 (284)
.+|
T Consensus 440 L~r 442 (443)
T PRK13168 440 FER 442 (443)
T ss_pred EEe
Confidence 654
No 139
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=4.9e-09 Score=88.04 Aligned_cols=80 Identities=25% Similarity=0.385 Sum_probs=68.1
Q ss_pred hccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccE
Q 039591 126 NGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDC 205 (284)
Q Consensus 126 ~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~ 205 (284)
.+.-.+++|+|+||| +|..++..+. +...+|+|+|+|+++++.+++|..+++ .++.|.++|+.+.. +.+|.
T Consensus 41 ~g~l~g~~V~DlG~G-TG~La~ga~~--lGa~~V~~vdiD~~a~ei~r~N~~~l~---g~v~f~~~dv~~~~---~~~dt 111 (198)
T COG2263 41 RGDLEGKTVLDLGAG-TGILAIGAAL--LGASRVLAVDIDPEALEIARANAEELL---GDVEFVVADVSDFR---GKFDT 111 (198)
T ss_pred cCCcCCCEEEEcCCC-cCHHHHHHHh--cCCcEEEEEecCHHHHHHHHHHHHhhC---CceEEEEcchhhcC---Cccce
Confidence 345678899999999 9999987775 566899999999999999999998843 68999999998643 68999
Q ss_pred EEEcCcCCC
Q 039591 206 IFLAALVGM 214 (284)
Q Consensus 206 V~~~~~~~~ 214 (284)
|+.+.+.|.
T Consensus 112 vimNPPFG~ 120 (198)
T COG2263 112 VIMNPPFGS 120 (198)
T ss_pred EEECCCCcc
Confidence 999988764
No 140
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.01 E-value=1.5e-09 Score=94.05 Aligned_cols=127 Identities=15% Similarity=0.110 Sum_probs=85.2
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh--------ccC
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK--------EKL 200 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~--------~~l 200 (284)
+++.+|||+||| .|..+..+++...++++|+++|+++. . + . .+++++++|+.+.. ...
T Consensus 50 ~~~~~VLDlG~G-tG~~t~~l~~~~~~~~~V~aVDi~~~---------~--~-~-~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 50 KPGMTVVDLGAA-PGGWSQYAVTQIGDKGRVIACDILPM---------D--P-I-VGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred CCCCEEEEEccc-CCHHHHHHHHHcCCCceEEEEecccc---------c--C-C-CCcEEEecCCCChHHHHHHHHHhCC
Confidence 678899999999 67777777763345679999999981 1 1 1 35899999988742 123
Q ss_pred CCccEEEEcCcC---CCCHHH-------HHHHHHHHHhccccCcEEEEEeccc--hhhhcCCCCCCCCC-CCcEEEEEEc
Q 039591 201 GEYDCIFLAALV---GMSKEE-------KMKIIRHIRKYMKDGGILLVRSAKG--ARAFLYPVVERHDL-LDFEVLSIFH 267 (284)
Q Consensus 201 ~~fD~V~~~~~~---~~~~~~-------k~~~l~~~~~~L~pGG~lv~~~~~g--~~~~lyp~v~~~~l-~gf~~~~~~~ 267 (284)
+.||+|+++... +....+ ...+++.+.+.|+|||.+++....+ ...++ ..+ ..|..+.++.
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l------~~l~~~f~~v~~~K 189 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYL------REIRSLFTKVKVRK 189 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHH------HHHHhCceEEEEEC
Confidence 689999987532 111111 2468999999999999999855322 22222 122 5677777777
Q ss_pred CCCceeeE
Q 039591 268 PIDEVINS 275 (284)
Q Consensus 268 p~~~v~ns 275 (284)
|......|
T Consensus 190 p~ssr~~s 197 (209)
T PRK11188 190 PDSSRARS 197 (209)
T ss_pred CccccccC
Confidence 76554444
No 141
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.01 E-value=7.1e-09 Score=88.50 Aligned_cols=108 Identities=14% Similarity=0.026 Sum_probs=82.2
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC----CCcc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL----GEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l----~~fD 204 (284)
..+.+|||++|| +|..++.++. ....+|+++|.|+.+++.++++++..+ +.++++++++|+.+....+ ..||
T Consensus 48 ~~g~~vLDLfaG-sG~lglea~s--rga~~v~~vE~~~~a~~~~~~N~~~~~-~~~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 48 IQGAHLLDVFAG-SGLLGEEALS--RGAKVAFLEEDDRKANQTLKENLALLK-SGEQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred cCCCEEEEecCC-CcHHHHHHHh--CCCCEEEEEeCCHHHHHHHHHHHHHhC-CcccEEEEehhHHHHHHHhhccCCCce
Confidence 357899999999 8999988887 233489999999999999999998865 5568999999997654322 2489
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHH--hccccCcEEEEEecc
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIR--KYMKDGGILLVRSAK 242 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~--~~L~pGG~lv~~~~~ 242 (284)
+|+.+.+.... ....+++.+. ..++++|++++....
T Consensus 124 vv~~DPPy~~~--~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 124 VIYLDPPFFNG--ALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred EEEECcCCCCC--cHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 99999877432 1234444443 479999999998743
No 142
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.00 E-value=4.7e-09 Score=98.70 Aligned_cols=101 Identities=12% Similarity=0.088 Sum_probs=81.2
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC-CCccEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL-GEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l-~~fD~V~ 207 (284)
.++.+|||+||| +|..++.++. ++.+|+++|+|+.+++.|+++++..+ + ++++|+++|+.+..... ++||+|+
T Consensus 232 ~~~~~vLDL~cG-~G~~~l~la~---~~~~v~~vE~~~~av~~a~~N~~~~~-~-~~~~~~~~d~~~~~~~~~~~~D~vi 305 (374)
T TIGR02085 232 IPVTQMWDLFCG-VGGFGLHCAG---PDTQLTGIEIESEAIACAQQSAQMLG-L-DNLSFAALDSAKFATAQMSAPELVL 305 (374)
T ss_pred cCCCEEEEccCC-ccHHHHHHhh---cCCeEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEECCHHHHHHhcCCCCCEEE
Confidence 456899999999 9999999987 56899999999999999999998755 4 48999999998754333 5699999
Q ss_pred EcCcC-CCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALV-GMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~-~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
++.+. |.. ..+++.+. .++|++++.+..
T Consensus 306 ~DPPr~G~~----~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 306 VNPPRRGIG----KELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred ECCCCCCCc----HHHHHHHH-hcCCCeEEEEEe
Confidence 99875 333 56666665 478988777755
No 143
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.99 E-value=4.5e-09 Score=101.15 Aligned_cols=110 Identities=16% Similarity=0.143 Sum_probs=87.0
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC-CCccEE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL-GEYDCI 206 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l-~~fD~V 206 (284)
..++++|||+++||.|-|+...+. ....+.|++.|+++.+++..+++++++| + .++.+...|.......+ +.||.|
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~-l~~~g~lvA~D~~~~R~~~L~~nl~r~G-~-~nv~v~~~D~~~~~~~~~~~fD~I 187 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAAL-MNNQGAIVANEYSASRVKVLHANISRCG-V-SNVALTHFDGRVFGAALPETFDAI 187 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHH-cCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CeEEEEeCchhhhhhhchhhcCeE
Confidence 378899999999998888766554 3345789999999999999999999987 3 56888889987643222 679999
Q ss_pred EEcCcC---CCC---H---------------HHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALV---GMS---K---------------EEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~---~~~---~---------------~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
++|++. |+. + .-..++++++++.|||||+|++.+
T Consensus 188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 998764 221 1 113789999999999999999876
No 144
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.96 E-value=1.3e-08 Score=89.80 Aligned_cols=109 Identities=14% Similarity=0.151 Sum_probs=82.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEE----Ecchhhhhcc-CCCc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFL----TGDILQVKEK-LGEY 203 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~----~~D~~~~~~~-l~~f 203 (284)
..+..+||+||| +|..++.++. .++.++|+++|.|+.|+..|.+|+++++ +..++.++ ++|..+.... .+++
T Consensus 147 ~~~~~ildlgtG-SGaIslsll~-~L~~~~v~AiD~S~~Ai~La~eN~qr~~-l~g~i~v~~~~me~d~~~~~~l~~~~~ 223 (328)
T KOG2904|consen 147 SKHTHILDLGTG-SGAISLSLLH-GLPQCTVTAIDVSKAAIKLAKENAQRLK-LSGRIEVIHNIMESDASDEHPLLEGKI 223 (328)
T ss_pred cccceEEEecCC-ccHHHHHHHh-cCCCceEEEEeccHHHHHHHHHHHHHHh-hcCceEEEecccccccccccccccCce
Confidence 456689999999 9999999888 6789999999999999999999999876 67888888 4555442222 2889
Q ss_pred cEEEEcCcCCCCH------------HH-------------HHHHHHHHHhccccCcEEEEEe
Q 039591 204 DCIFLAALVGMSK------------EE-------------KMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 204 D~V~~~~~~~~~~------------~~-------------k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+++++.+.-... ++ -..++.-+-++|+|||.+.+..
T Consensus 224 dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 224 DLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred eEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 9999886541110 11 1445566678999999988765
No 145
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.95 E-value=9.1e-09 Score=90.78 Aligned_cols=98 Identities=28% Similarity=0.386 Sum_probs=80.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.+..+|+|||+| .|..++.+++ ..|+.+++.+|+ |+.++.+++ .+||+++.+|+.+ ++..+|++++
T Consensus 99 ~~~~~vvDvGGG-~G~~~~~l~~-~~P~l~~~v~Dl-p~v~~~~~~--------~~rv~~~~gd~f~---~~P~~D~~~l 164 (241)
T PF00891_consen 99 SGFKTVVDVGGG-SGHFAIALAR-AYPNLRATVFDL-PEVIEQAKE--------ADRVEFVPGDFFD---PLPVADVYLL 164 (241)
T ss_dssp TTSSEEEEET-T-TSHHHHHHHH-HSTTSEEEEEE--HHHHCCHHH--------TTTEEEEES-TTT---CCSSESEEEE
T ss_pred cCccEEEeccCc-chHHHHHHHH-HCCCCcceeecc-Hhhhhcccc--------ccccccccccHHh---hhccccceee
Confidence 566799999999 9999999998 689999999999 999999888 2799999999984 3333999999
Q ss_pred cCcCC-CCHHHHHHHHHHHHhccccC--cEEEEEe
Q 039591 209 AALVG-MSKEEKMKIIRHIRKYMKDG--GILLVRS 240 (284)
Q Consensus 209 ~~~~~-~~~~~k~~~l~~~~~~L~pG--G~lv~~~ 240 (284)
....+ +.+++-..+++++++.|+|| |+|++..
T Consensus 165 ~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 165 RHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp ESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred ehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 88664 45567789999999999999 9998865
No 146
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.95 E-value=4.5e-09 Score=89.37 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=68.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh--------ccC
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK--------EKL 200 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~--------~~l 200 (284)
.++++|||+||||.+ .+..+++...+.++|+++|+|+.+ .. .+++++++|+.+.. ...
T Consensus 31 ~~g~~VLDiG~GtG~-~~~~l~~~~~~~~~v~~vDis~~~--------~~-----~~i~~~~~d~~~~~~~~~l~~~~~~ 96 (188)
T TIGR00438 31 KPGDTVLDLGAAPGG-WSQVAVEQVGGKGRVIAVDLQPMK--------PI-----ENVDFIRGDFTDEEVLNKIRERVGD 96 (188)
T ss_pred CCCCEEEEecCCCCH-HHHHHHHHhCCCceEEEEeccccc--------cC-----CCceEEEeeCCChhHHHHHHHHhCC
Confidence 778999999999555 455555423456789999999964 11 35788888876421 122
Q ss_pred CCccEEEEcCc---CCCC-------HHHHHHHHHHHHhccccCcEEEEEe
Q 039591 201 GEYDCIFLAAL---VGMS-------KEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 201 ~~fD~V~~~~~---~~~~-------~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
++||+|++++. .+.+ .+....+++.+.+.|+|||++++..
T Consensus 97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 57999998642 1211 1234689999999999999999854
No 147
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.94 E-value=1.7e-08 Score=96.61 Aligned_cols=100 Identities=19% Similarity=0.200 Sum_probs=79.3
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc----CCCcc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK----LGEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~----l~~fD 204 (284)
.++++|||+||| .|..++.+|+ ...+|+++|+|+.+++.|+++++..+ + .+++|+.+|+.+.... .+.||
T Consensus 291 ~~~~~vLDl~cG-~G~~sl~la~---~~~~V~~vE~~~~av~~a~~n~~~~~-~-~nv~~~~~d~~~~l~~~~~~~~~~D 364 (431)
T TIGR00479 291 QGEELVVDAYCG-VGTFTLPLAK---QAKSVVGIEVVPESVEKAQQNAELNG-I-ANVEFLAGTLETVLPKQPWAGQIPD 364 (431)
T ss_pred CCCCEEEEcCCC-cCHHHHHHHH---hCCEEEEEEcCHHHHHHHHHHHHHhC-C-CceEEEeCCHHHHHHHHHhcCCCCC
Confidence 566899999999 8999999998 45689999999999999999988755 3 5899999999864322 14699
Q ss_pred EEEEcCcC-CCCHHHHHHHHHHHHhccccCcEEEEE
Q 039591 205 CIFLAALV-GMSKEEKMKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 205 ~V~~~~~~-~~~~~~k~~~l~~~~~~L~pGG~lv~~ 239 (284)
+|+++.+. |.. ..+++.+. .++|++++.+.
T Consensus 365 ~vi~dPPr~G~~----~~~l~~l~-~l~~~~ivyvs 395 (431)
T TIGR00479 365 VLLLDPPRKGCA----AEVLRTII-ELKPERIVYVS 395 (431)
T ss_pred EEEECcCCCCCC----HHHHHHHH-hcCCCEEEEEc
Confidence 99999864 444 56666655 48898866553
No 148
>PRK00536 speE spermidine synthase; Provisional
Probab=98.94 E-value=1e-08 Score=91.44 Aligned_cols=99 Identities=17% Similarity=0.180 Sum_probs=78.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhcc--CCCCCeEEEEcchhhhhccCCCccEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDF--EFEKRMKFLTGDILQVKEKLGEYDCI 206 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~--~l~~~v~~~~~D~~~~~~~l~~fD~V 206 (284)
+.|++||.||+| -|.++..+.| | + .+|+.+|+|++.++.+++.+..+. .-+.|++++.. +.+ ..-++||+|
T Consensus 71 ~~pk~VLIiGGG-DGg~~REvLk-h-~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVI 143 (262)
T PRK00536 71 KELKEVLIVDGF-DLELAHQLFK-Y-D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLI 143 (262)
T ss_pred CCCCeEEEEcCC-chHHHHHHHC-c-C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEE
Confidence 778999999999 8999999998 3 4 399999999999999999654422 12467888752 221 112689999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+++.... .++++.+.+.|+|||+++..+
T Consensus 144 IvDs~~~------~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 144 ICLQEPD------IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred EEcCCCC------hHHHHHHHHhcCCCcEEEECC
Confidence 9997542 688999999999999999976
No 149
>PHA03411 putative methyltransferase; Provisional
Probab=98.94 E-value=9.3e-09 Score=91.91 Aligned_cols=101 Identities=12% Similarity=0.208 Sum_probs=75.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
..+.+|||+||| .|..++.+++ ..++.+|+++|+|+.+++.|+++. .+++++++|+.+... .++||+|++
T Consensus 63 ~~~grVLDLGcG-sGilsl~la~-r~~~~~V~gVDisp~al~~Ar~n~-------~~v~~v~~D~~e~~~-~~kFDlIIs 132 (279)
T PHA03411 63 HCTGKVLDLCAG-IGRLSFCMLH-RCKPEKIVCVELNPEFARIGKRLL-------PEAEWITSDVFEFES-NEKFDVVIS 132 (279)
T ss_pred ccCCeEEEcCCC-CCHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHhC-------cCCEEEECchhhhcc-cCCCcEEEE
Confidence 345799999999 8988877776 345689999999999999999863 257899999987542 268999999
Q ss_pred cCcCCCC-HHHH------------------HHHHHHHHhccccCcEEEEE
Q 039591 209 AALVGMS-KEEK------------------MKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 209 ~~~~~~~-~~~k------------------~~~l~~~~~~L~pGG~lv~~ 239 (284)
+.+.+.. ..+. .++++.....|+|+|.+.+.
T Consensus 133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 8876432 1111 35566677888999876543
No 150
>PHA03412 putative methyltransferase; Provisional
Probab=98.92 E-value=1.1e-08 Score=89.55 Aligned_cols=99 Identities=17% Similarity=0.250 Sum_probs=74.6
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHL--KATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~--~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
.+.+|||+||| +|..++.+++... +..+|+++|+|+.+++.|+++. .++.++++|+..... .++||+|+
T Consensus 49 ~~grVLDlG~G-SG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-------~~~~~~~~D~~~~~~-~~~FDlII 119 (241)
T PHA03412 49 TSGSVVDLCAG-IGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-------PEATWINADALTTEF-DTLFDMAI 119 (241)
T ss_pred CCCEEEEccCh-HHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-------cCCEEEEcchhcccc-cCCccEEE
Confidence 46799999999 9999998887211 3568999999999999999874 247899999975432 26899999
Q ss_pred EcCcCCCCH-----------HHHHHHHHHHHhccccCcEEE
Q 039591 208 LAALVGMSK-----------EEKMKIIRHIRKYMKDGGILL 237 (284)
Q Consensus 208 ~~~~~~~~~-----------~~k~~~l~~~~~~L~pGG~lv 237 (284)
++.+.+... .--..+++.+.+++++|+.|+
T Consensus 120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~IL 160 (241)
T PHA03412 120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFII 160 (241)
T ss_pred ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEe
Confidence 998664211 123568888888777777633
No 151
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.91 E-value=1.3e-08 Score=95.44 Aligned_cols=110 Identities=20% Similarity=0.185 Sum_probs=88.7
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC----CCcc
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL----GEYD 204 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l----~~fD 204 (284)
.|++||++=|= +|..++..|. .|+ +||+||+|..+++.|++|++--|.-.+++.|+++|++++.... .+||
T Consensus 217 ~GkrvLNlFsY-TGgfSv~Aa~---gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fD 292 (393)
T COG1092 217 AGKRVLNLFSY-TGGFSVHAAL---GGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFD 292 (393)
T ss_pred cCCeEEEeccc-CcHHHHHHHh---cCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCccc
Confidence 39999999999 8888888886 666 9999999999999999998763422467999999999876544 4899
Q ss_pred EEEEcCcC-CCC-------HHHHHHHHHHHHhccccCcEEEEEeccc
Q 039591 205 CIFLAALV-GMS-------KEEKMKIIRHIRKYMKDGGILLVRSAKG 243 (284)
Q Consensus 205 ~V~~~~~~-~~~-------~~~k~~~l~~~~~~L~pGG~lv~~~~~g 243 (284)
+|+++.+. ... ..+-.++...+.+.|+|||++++.+.+.
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 99999864 111 1233678889999999999999887433
No 152
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.90 E-value=6.7e-09 Score=89.06 Aligned_cols=105 Identities=21% Similarity=0.277 Sum_probs=82.4
Q ss_pred eEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc---CCCccEEEEc
Q 039591 133 KVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK---LGEYDCIFLA 209 (284)
Q Consensus 133 ~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~---l~~fD~V~~~ 209 (284)
.++||||| .|-..+.+|+ ..|+..++|+|+....+..|.+.+...+ + .++.++++|+...... -+.+|-|++.
T Consensus 20 l~lEIG~G-~G~~l~~~A~-~~Pd~n~iGiE~~~~~v~~a~~~~~~~~-l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 20 LILEIGCG-KGEFLIELAK-RNPDINFIGIEIRKKRVAKALRKAEKRG-L-KNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEET-T-TSHHHHHHHH-HSTTSEEEEEES-HHHHHHHHHHHHHHT-T-SSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred eEEEecCC-CCHHHHHHHH-HCCCCCEEEEecchHHHHHHHHHHHhhc-c-cceEEEEccHHHHHhhcccCCchheEEEe
Confidence 88999999 9999999999 6799999999999999999999988765 3 7999999999875432 2689999987
Q ss_pred CcCCCCHHH-------HHHHHHHHHhccccCcEEEEEec
Q 039591 210 ALVGMSKEE-------KMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 210 ~~~~~~~~~-------k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
-+-.+++.. ...+++.+++.|+|||.|.+.+.
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 654333211 17899999999999999998873
No 153
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.90 E-value=6.7e-09 Score=86.16 Aligned_cols=77 Identities=21% Similarity=0.308 Sum_probs=58.8
Q ss_pred CeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCC--C-ccEEEE
Q 039591 132 KKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLG--E-YDCIFL 208 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~--~-fD~V~~ 208 (284)
+.|+|+.|| .|-.++.+|+ ...+|+++|+||..++.|+.|++-.| ..++|+|+++|+.+....+. . ||+||+
T Consensus 1 ~~vlD~fcG-~GGNtIqFA~---~~~~Viaidid~~~~~~a~hNa~vYG-v~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 1 TTVLDAFCG-VGGNTIQFAR---TFDRVIAIDIDPERLECAKHNAEVYG-VADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp SEEEETT-T-TSHHHHHHHH---TT-EEEEEES-HHHHHHHHHHHHHTT--GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred CEEEEeccC-cCHHHHHHHH---hCCeEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 369999999 9999999998 46789999999999999999999887 67899999999998765542 2 899999
Q ss_pred cCcCC
Q 039591 209 AALVG 213 (284)
Q Consensus 209 ~~~~~ 213 (284)
+.+-|
T Consensus 76 SPPWG 80 (163)
T PF09445_consen 76 SPPWG 80 (163)
T ss_dssp ---BS
T ss_pred CCCCC
Confidence 87553
No 154
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.89 E-value=1.3e-08 Score=87.36 Aligned_cols=110 Identities=21% Similarity=0.275 Sum_probs=79.9
Q ss_pred HHHHHHHhhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh
Q 039591 118 FECRILKENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK 197 (284)
Q Consensus 118 ~E~~~l~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~ 197 (284)
.|...+... ..++++|+|.-|| .|..++.+|+ +.++..|+++|++|.+++..+++++. +.+..++..+++|+.+..
T Consensus 90 ~Er~Ri~~~-v~~~e~VlD~faG-IG~f~l~~ak-~~~~~~V~A~d~Np~a~~~L~~Ni~l-Nkv~~~i~~~~~D~~~~~ 165 (200)
T PF02475_consen 90 TERRRIANL-VKPGEVVLDMFAG-IGPFSLPIAK-HGKAKRVYAVDLNPDAVEYLKENIRL-NKVENRIEVINGDAREFL 165 (200)
T ss_dssp HHHHHHHTC---TT-EEEETT-T-TTTTHHHHHH-HT-SSEEEEEES-HHHHHHHHHHHHH-TT-TTTEEEEES-GGG--
T ss_pred HHHHHHHhc-CCcceEEEEccCC-ccHHHHHHhh-hcCccEEEEecCCHHHHHHHHHHHHH-cCCCCeEEEEcCCHHHhc
Confidence 355544433 4778999999999 9999999998 56778999999999999999999877 447888999999999876
Q ss_pred ccCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEE
Q 039591 198 EKLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILL 237 (284)
Q Consensus 198 ~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv 237 (284)
. .+.||.|++..+... ..++..+.+.+++||.+-
T Consensus 166 ~-~~~~drvim~lp~~~-----~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 166 P-EGKFDRVIMNLPESS-----LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp --TT-EEEEEE--TSSG-----GGGHHHHHHHEEEEEEEE
T ss_pred C-ccccCEEEECChHHH-----HHHHHHHHHHhcCCcEEE
Confidence 5 478999999876432 468888999999998763
No 155
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.88 E-value=2.2e-09 Score=92.43 Aligned_cols=142 Identities=18% Similarity=0.185 Sum_probs=97.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCccEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEYDCI 206 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~fD~V 206 (284)
.+-+++||+||| +|++...+-. ...+++++|+|+.|+++|.+. |.. + +..++|+..+..+. ++||+|
T Consensus 124 g~F~~~lDLGCG-TGL~G~~lR~---~a~~ltGvDiS~nMl~kA~eK----g~Y-D--~L~~Aea~~Fl~~~~~er~DLi 192 (287)
T COG4976 124 GPFRRMLDLGCG-TGLTGEALRD---MADRLTGVDISENMLAKAHEK----GLY-D--TLYVAEAVLFLEDLTQERFDLI 192 (287)
T ss_pred CccceeeecccC-cCcccHhHHH---HHhhccCCchhHHHHHHHHhc----cch-H--HHHHHHHHHHhhhccCCcccch
Confidence 446899999999 9999988865 456899999999999999986 211 1 23456666554323 789999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEeccc--hhhh-cCCCCCCC-------C---CCCcEEEEEEc------
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSAKG--ARAF-LYPVVERH-------D---LLDFEVLSIFH------ 267 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~~g--~~~~-lyp~v~~~-------~---l~gf~~~~~~~------ 267 (284)
..+- +-+|...-..++--+...|+|||.+.+..... ...| +-|..-.. + -.||+++....
T Consensus 193 ~AaD-Vl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d 271 (287)
T COG4976 193 VAAD-VLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRD 271 (287)
T ss_pred hhhh-HHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhh
Confidence 8543 33344556889999999999999999877321 1222 22322221 1 26999997532
Q ss_pred CCCceeeEEEEEeec
Q 039591 268 PIDEVINSVILVRKP 282 (284)
Q Consensus 268 p~~~v~nsvi~~rk~ 282 (284)
-..+|-...+++|||
T Consensus 272 ~g~pv~G~L~iark~ 286 (287)
T COG4976 272 AGEPVPGILVIARKK 286 (287)
T ss_pred cCCCCCCceEEEecC
Confidence 223566669999986
No 156
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.86 E-value=2.1e-08 Score=85.17 Aligned_cols=110 Identities=13% Similarity=0.204 Sum_probs=80.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc----CCCcc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK----LGEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~----l~~fD 204 (284)
..+.++||+=|| +|..++.... .+..+|+.||.|+.++...++|++.++ ...+++++++|+...... ...||
T Consensus 41 ~~g~~vLDLFaG-SGalGlEALS--RGA~~v~fVE~~~~a~~~i~~N~~~l~-~~~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 41 LEGARVLDLFAG-SGALGLEALS--RGAKSVVFVEKNRKAIKIIKKNLEKLG-LEDKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp HTT-EEEETT-T-TSHHHHHHHH--TT-SEEEEEES-HHHHHHHHHHHHHHT--GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred cCCCeEEEcCCc-cCccHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHhC-CCcceeeeccCHHHHHHhhcccCCCce
Confidence 468899999999 8877776555 255689999999999999999999877 556799999998765432 27899
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHH--hccccCcEEEEEeccc
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIR--KYMKDGGILLVRSAKG 243 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~--~~L~pGG~lv~~~~~g 243 (284)
+||+|.+...... -.++++.+. .+|+++|++++.....
T Consensus 117 iIflDPPY~~~~~-~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 117 IIFLDPPYAKGLY-YEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEEE--STTSCHH-HHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred EEEECCCcccchH-HHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 9999998754421 356777776 8999999999988433
No 157
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.86 E-value=6.2e-09 Score=88.37 Aligned_cols=104 Identities=18% Similarity=0.269 Sum_probs=77.2
Q ss_pred CCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeE-EEEcchhhhh-ccCCCccEEEE
Q 039591 131 PKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMK-FLTGDILQVK-EKLGEYDCIFL 208 (284)
Q Consensus 131 ~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~-~~~~D~~~~~-~~l~~fD~V~~ 208 (284)
...||+|||| +|..-- +-. ..|+.+||++|.+|.|-+.|.+.++.-. ..++. |+.++..+++ ...++||.|+.
T Consensus 77 K~~vLEvgcG-tG~Nfk-fy~-~~p~~svt~lDpn~~mee~~~ks~~E~k--~~~~~~fvva~ge~l~~l~d~s~DtVV~ 151 (252)
T KOG4300|consen 77 KGDVLEVGCG-TGANFK-FYP-WKPINSVTCLDPNEKMEEIADKSAAEKK--PLQVERFVVADGENLPQLADGSYDTVVC 151 (252)
T ss_pred ccceEEeccc-CCCCcc-ccc-CCCCceEEEeCCcHHHHHHHHHHHhhcc--CcceEEEEeechhcCcccccCCeeeEEE
Confidence 3468999999 564322 222 2378999999999999999998876522 35676 9999998864 23388999986
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.-.. ...++..+.+++..+.|||||++++-.
T Consensus 152 TlvL-CSve~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 152 TLVL-CSVEDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred EEEE-eccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 5322 223567899999999999999988654
No 158
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.84 E-value=3.6e-08 Score=90.56 Aligned_cols=84 Identities=18% Similarity=0.169 Sum_probs=63.3
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEE-cchhhhhc----cCCCcc
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLT-GDILQVKE----KLGEYD 204 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~-~D~~~~~~----~l~~fD 204 (284)
.+.++|||||| .|.....++. ..++.+++++|+|+.+++.|+++++..+.+.++|+++. .|..+... ..+.||
T Consensus 114 ~~~~vLDIGtG-ag~I~~lLa~-~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVG-ANCIYPLIGV-HEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCC-ccHHHHHHHh-hCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceE
Confidence 46799999999 6766666665 35789999999999999999999987424778898864 44433222 125799
Q ss_pred EEEEcCcCCCC
Q 039591 205 CIFLAALVGMS 215 (284)
Q Consensus 205 ~V~~~~~~~~~ 215 (284)
+|+++.+....
T Consensus 192 livcNPPf~~s 202 (321)
T PRK11727 192 ATLCNPPFHAS 202 (321)
T ss_pred EEEeCCCCcCc
Confidence 99999877433
No 159
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.84 E-value=3.3e-08 Score=93.05 Aligned_cols=101 Identities=16% Similarity=0.183 Sum_probs=82.1
Q ss_pred CCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcC
Q 039591 131 PKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAA 210 (284)
Q Consensus 131 ~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~ 210 (284)
+.+|||++|| +|..++.+++ ..+..+|+++|+|+.+++.+++|++..+ + +++++.++|+.+.....+.||+|+++.
T Consensus 58 ~~~vLDl~aG-sG~~~l~~a~-~~~~~~V~a~Din~~Av~~a~~N~~~N~-~-~~~~v~~~Da~~~l~~~~~fD~V~lDP 133 (382)
T PRK04338 58 RESVLDALSA-SGIRGIRYAL-ETGVEKVTLNDINPDAVELIKKNLELNG-L-ENEKVFNKDANALLHEERKFDVVDIDP 133 (382)
T ss_pred CCEEEECCCc-ccHHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CceEEEhhhHHHHHhhcCCCCEEEECC
Confidence 4689999999 9999999987 3444589999999999999999987644 4 457899999987543235799999997
Q ss_pred cCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 211 LVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 211 ~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+ |.. ..+++.+.+.+++||++.+..
T Consensus 134 ~-Gs~----~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 F-GSP----APFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred C-CCc----HHHHHHHHHHhcCCCEEEEEe
Confidence 5 543 578888788899999998864
No 160
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.80 E-value=9.1e-08 Score=89.66 Aligned_cols=97 Identities=10% Similarity=0.159 Sum_probs=75.0
Q ss_pred CCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC----------
Q 039591 131 PKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL---------- 200 (284)
Q Consensus 131 ~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l---------- 200 (284)
+.+|||++|| +|..++.+++ ...+|+++|+++.+++.|+++++..+ + ++++|+++|+.+....+
T Consensus 207 ~~~vLDl~~G-~G~~sl~la~---~~~~v~~vE~~~~ai~~a~~N~~~~~-~-~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 207 KGDLLELYCG-NGNFTLALAR---NFRRVLATEISKPSVAAAQYNIAANG-I-DNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CCeEEEEecc-ccHHHHHHHh---hCCEEEEEECCHHHHHHHHHHHHHhC-C-CcEEEEECCHHHHHHHHhhcccccccc
Confidence 3579999999 9999999988 34689999999999999999987754 4 48999999998754322
Q ss_pred ------CCccEEEEcCcC-CCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 201 ------GEYDCIFLAALV-GMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 201 ------~~fD~V~~~~~~-~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
..||+||+|.+- |+. .++++.+.+ |++++.+.-
T Consensus 281 ~~~~~~~~~D~v~lDPPR~G~~----~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPRAGLD----DETLKLVQA---YERILYISC 320 (362)
T ss_pred cccccCCCCCEEEECCCCCCCc----HHHHHHHHc---cCCEEEEEe
Confidence 148999999875 444 566666654 566655543
No 161
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.78 E-value=1.3e-07 Score=88.25 Aligned_cols=97 Identities=12% Similarity=0.150 Sum_probs=74.9
Q ss_pred CCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc------C---C
Q 039591 131 PKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK------L---G 201 (284)
Q Consensus 131 ~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~------l---~ 201 (284)
+.+|||+||| +|..++.+++ ...+|+++|+++.+++.|+++++..+ + ++++|+++|+.+.... + +
T Consensus 198 ~~~vlDl~~G-~G~~sl~la~---~~~~v~~vE~~~~av~~a~~n~~~~~-~-~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 198 KGDLLELYCG-NGNFSLALAQ---NFRRVLATEIAKPSVNAAQYNIAANN-I-DNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CCcEEEEecc-ccHHHHHHHH---hCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEEcCHHHHHHHHhhcccccccc
Confidence 3579999999 9999999998 33589999999999999999988754 4 4799999999875432 1 1
Q ss_pred -------CccEEEEcCcC-CCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 202 -------EYDCIFLAALV-GMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 202 -------~fD~V~~~~~~-~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.||+||+|.+- |.. ..+++.+.+ |++++.+.-
T Consensus 272 ~~~~~~~~~d~v~lDPPR~G~~----~~~l~~l~~---~~~ivYvsC 311 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPPRAGLD----PDTCKLVQA---YERILYISC 311 (353)
T ss_pred ccccccCCCCEEEECCCCCCCc----HHHHHHHHc---CCcEEEEEc
Confidence 38999999875 444 566666654 666666644
No 162
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.77 E-value=7.3e-08 Score=87.12 Aligned_cols=107 Identities=24% Similarity=0.302 Sum_probs=78.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCC-CCeEEEEcchhhhhcc---CCCc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFE-KRMKFLTGDILQVKEK---LGEY 203 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~-~~v~~~~~D~~~~~~~---l~~f 203 (284)
..+++||++=|= +|-.++..++ .|+ +|++||.|..+++.|++|++. ++++ ++++|+++|+.+.... -++|
T Consensus 122 ~~gkrvLnlFsY-TGgfsv~Aa~---gGA~~v~~VD~S~~al~~a~~N~~l-Ng~~~~~~~~~~~Dvf~~l~~~~~~~~f 196 (286)
T PF10672_consen 122 AKGKRVLNLFSY-TGGFSVAAAA---GGAKEVVSVDSSKRALEWAKENAAL-NGLDLDRHRFIQGDVFKFLKRLKKGGRF 196 (286)
T ss_dssp CTTCEEEEET-T-TTHHHHHHHH---TTESEEEEEES-HHHHHHHHHHHHH-TT-CCTCEEEEES-HHHHHHHHHHTT-E
T ss_pred cCCCceEEecCC-CCHHHHHHHH---CCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHHHHHHHHhcCCCC
Confidence 467899999999 6666766665 454 799999999999999999876 4354 6899999999886543 2789
Q ss_pred cEEEEcCcC---CCC--HHHHHHHHHHHHhccccCcEEEEEe
Q 039591 204 DCIFLAALV---GMS--KEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 204 D~V~~~~~~---~~~--~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+|+++.+. +.. ..+-.+++..+.+.++|||.|+..+
T Consensus 197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 999999764 211 1233678999999999999998766
No 163
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.76 E-value=1.3e-07 Score=80.37 Aligned_cols=101 Identities=20% Similarity=0.201 Sum_probs=83.3
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEc
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLA 209 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~ 209 (284)
.+.+++||||| .|+-++.+|- ..|..+|+.+|.+...++.-+.....++ + ++++++++.+.+ ......||+|++-
T Consensus 48 ~~~~~lDiGSG-aGfPGipLaI-~~p~~~~~LvEs~~KK~~FL~~~~~~L~-L-~nv~v~~~R~E~-~~~~~~fd~v~aR 122 (184)
T PF02527_consen 48 FGKKVLDIGSG-AGFPGIPLAI-ARPDLQVTLVESVGKKVAFLKEVVRELG-L-SNVEVINGRAEE-PEYRESFDVVTAR 122 (184)
T ss_dssp CCSEEEEETST-TTTTHHHHHH-H-TTSEEEEEESSHHHHHHHHHHHHHHT---SSEEEEES-HHH-TTTTT-EEEEEEE
T ss_pred CCceEEecCCC-CCChhHHHHH-hCCCCcEEEEeCCchHHHHHHHHHHHhC-C-CCEEEEEeeecc-cccCCCccEEEee
Confidence 33389999999 9999999987 6899999999999999999999999988 5 589999999987 2233789999998
Q ss_pred CcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 210 ALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 210 ~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+... -..+++.+.+.+++||.++.--
T Consensus 123 Av~~-----l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 123 AVAP-----LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp SSSS-----HHHHHHHHGGGEEEEEEEEEEE
T ss_pred hhcC-----HHHHHHHHHHhcCCCCEEEEEc
Confidence 8652 2588899999999999988754
No 164
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=2e-07 Score=87.08 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=86.2
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC---CCcc
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL---GEYD 204 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l---~~fD 204 (284)
+.++++|||..++|.|-|+...+.-...+..|+++|+|+.++...+++++++| + .++..++.|........ +.||
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG-~-~nv~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG-V-RNVIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC-C-CceEEEecccccccccccccCcCc
Confidence 48899999999999999987766511225678999999999999999999988 3 45778888876443222 3599
Q ss_pred EEEEcCcC---CCC------------------HHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALV---GMS------------------KEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~---~~~------------------~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.|+++++. |.. ..-..++++.+.+.+||||+|++.+
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 99998764 211 1124789999999999999999977
No 165
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.74 E-value=5.7e-08 Score=82.97 Aligned_cols=91 Identities=12% Similarity=0.116 Sum_probs=67.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh--ccCCCccEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK--EKLGEYDCI 206 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~--~~l~~fD~V 206 (284)
+++++|||+||| .|..+..+++ ..+..++++|+++++++.|++. +++++++|+.+.. ...+.||+|
T Consensus 12 ~~~~~iLDiGcG-~G~~~~~l~~--~~~~~~~giD~s~~~i~~a~~~---------~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 12 PPGSRVLDLGCG-DGELLALLRD--EKQVRGYGIEIDQDGVLACVAR---------GVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCCEEEEeCCC-CCHHHHHHHh--ccCCcEEEEeCCHHHHHHHHHc---------CCeEEEEEhhhcccccCCCCcCEE
Confidence 467899999999 7888888876 2567889999999999888642 3678889987522 222679999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhcccc
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKD 232 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~p 232 (284)
++....++. .+...+++++.+.+++
T Consensus 80 i~~~~l~~~-~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 80 ILSQTLQAT-RNPEEILDEMLRVGRH 104 (194)
T ss_pred EEhhHhHcC-cCHHHHHHHHHHhCCe
Confidence 998755332 4567788888776554
No 166
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.74 E-value=5.9e-08 Score=84.34 Aligned_cols=108 Identities=21% Similarity=0.339 Sum_probs=77.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCC--------------------------
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEF-------------------------- 182 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l-------------------------- 182 (284)
..+..+|||||- .|..++.+|+ .+..-.|.|+|||+..+..|+++++..-..
T Consensus 57 f~~~~~LDIGCN-sG~lt~~iak-~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 57 FEPKQALDIGCN-SGFLTLSIAK-DFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cCcceeEeccCC-cchhHHHHHH-hhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 457899999999 9999999999 666678999999999999999987642100
Q ss_pred -------CCCeEEEEc-------chhhhhccCCCccEEEEcC---cCC--CCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 183 -------EKRMKFLTG-------DILQVKEKLGEYDCIFLAA---LVG--MSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 183 -------~~~v~~~~~-------D~~~~~~~l~~fD~V~~~~---~~~--~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.+++.|... |..+ .....||+|++-+ +++ +.++--.++|.++.++|.|||+|++.-
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~--~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLD--MIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhh--hccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 001112221 1211 1126799998754 222 234667899999999999999999864
No 167
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.74 E-value=9.2e-08 Score=81.93 Aligned_cols=118 Identities=18% Similarity=0.185 Sum_probs=85.2
Q ss_pred HHHHHhhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc
Q 039591 120 CRILKENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK 199 (284)
Q Consensus 120 ~~~l~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~ 199 (284)
.+.|.++....+.+||||||| +|-.+..+|+ ++|..+-.-.|.++....--+..+...+ +..-..-+.-|+.+..-.
T Consensus 15 l~vL~~~l~~~~~~vLEiaSG-tGqHa~~FA~-~lP~l~WqPSD~~~~~~~sI~a~~~~~~-~~Nv~~P~~lDv~~~~w~ 91 (204)
T PF06080_consen 15 LEVLKQYLPDSGTRVLEIASG-TGQHAVYFAQ-ALPHLTWQPSDPDDNLRPSIRAWIAEAG-LPNVRPPLALDVSAPPWP 91 (204)
T ss_pred HHHHHHHhCccCceEEEEcCC-ccHHHHHHHH-HCCCCEEcCCCCChHHHhhHHHHHHhcC-CcccCCCeEeecCCCCCc
Confidence 344555554444479999999 9999999999 7899999999999999766666555433 222223334555432111
Q ss_pred --------CCCccEEEEcCcCCCC-HHHHHHHHHHHHhccccCcEEEEEe
Q 039591 200 --------LGEYDCIFLAALVGMS-KEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 200 --------l~~fD~V~~~~~~~~~-~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.+.||.||+....+.. -+.-+.+|+.+.++|++||.|++-+
T Consensus 92 ~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 92 WELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred cccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 1489999998876543 3566899999999999999999855
No 168
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.73 E-value=2.8e-07 Score=77.86 Aligned_cols=111 Identities=16% Similarity=0.186 Sum_probs=83.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC-C--CccE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL-G--EYDC 205 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l-~--~fD~ 205 (284)
-.+.++||+=+| +|..++..+. ....+++.||.|..+....++|++.++ +..+.+++..|+......+ . .||+
T Consensus 42 i~g~~~LDlFAG-SGaLGlEAlS--RGA~~~~~vE~~~~a~~~l~~N~~~l~-~~~~~~~~~~da~~~L~~~~~~~~FDl 117 (187)
T COG0742 42 IEGARVLDLFAG-SGALGLEALS--RGAARVVFVEKDRKAVKILKENLKALG-LEGEARVLRNDALRALKQLGTREPFDL 117 (187)
T ss_pred cCCCEEEEecCC-ccHhHHHHHh--CCCceEEEEecCHHHHHHHHHHHHHhC-CccceEEEeecHHHHHHhcCCCCcccE
Confidence 467899999777 5555555444 256789999999999999999999876 5678999999998654444 3 4999
Q ss_pred EEEcCcCCCCHHHHHHHHHH--HHhccccCcEEEEEeccc
Q 039591 206 IFLAALVGMSKEEKMKIIRH--IRKYMKDGGILLVRSAKG 243 (284)
Q Consensus 206 V~~~~~~~~~~~~k~~~l~~--~~~~L~pGG~lv~~~~~g 243 (284)
||+|.+.+....++...+.. -..+|+|+|.+++.....
T Consensus 118 VflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 118 VFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred EEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 99999875333333333333 457899999999987433
No 169
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.72 E-value=1.9e-07 Score=83.44 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=64.7
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEE
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCI 206 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V 206 (284)
...++++||||||| .|..+..+++ .+.+|+++|+|+.+++.+++++.. ..+++++++|+.+.. +..||.|
T Consensus 26 ~~~~~~~VLEIG~G-~G~lt~~L~~---~~~~v~~vEid~~~~~~l~~~~~~----~~~v~ii~~D~~~~~--~~~~d~V 95 (258)
T PRK14896 26 EDTDGDPVLEIGPG-KGALTDELAK---RAKKVYAIELDPRLAEFLRDDEIA----AGNVEIIEGDALKVD--LPEFNKV 95 (258)
T ss_pred CCCCcCeEEEEeCc-cCHHHHHHHH---hCCEEEEEECCHHHHHHHHHHhcc----CCCEEEEEeccccCC--chhceEE
Confidence 34678899999999 8888889988 357999999999999999988754 257999999998643 4568999
Q ss_pred EEcCcCCCC
Q 039591 207 FLAALVGMS 215 (284)
Q Consensus 207 ~~~~~~~~~ 215 (284)
+.+.+....
T Consensus 96 v~NlPy~i~ 104 (258)
T PRK14896 96 VSNLPYQIS 104 (258)
T ss_pred EEcCCcccC
Confidence 998776543
No 170
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.72 E-value=1.1e-07 Score=83.24 Aligned_cols=106 Identities=23% Similarity=0.300 Sum_probs=89.1
Q ss_pred CCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC---CCccEEE
Q 039591 131 PKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL---GEYDCIF 207 (284)
Q Consensus 131 ~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l---~~fD~V~ 207 (284)
...+|||||| .|-..+.+|+ ..|...++|||+....+..|.+.+.+.+ + .++.++++|+.+....+ +..|-|+
T Consensus 49 ~pi~lEIGfG-~G~~l~~~A~-~nP~~nfiGiEi~~~~v~~~l~k~~~~~-l-~Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 49 APIVLEIGFG-MGEFLVEMAK-KNPEKNFLGIEIRVPGVAKALKKIKELG-L-KNLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred CcEEEEECCC-CCHHHHHHHH-HCCCCCEEEEEEehHHHHHHHHHHHHcC-C-CcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 3589999999 9999999999 6899999999999999999999998866 3 38999999999876544 4899998
Q ss_pred EcCcCCCCHHH-------HHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALVGMSKEE-------KMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~~~~~~~-------k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+.-+-.|.+.- ...+++.+++.|+|||.|-+.+
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 87655443221 2789999999999999999877
No 171
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.72 E-value=1.9e-08 Score=77.29 Aligned_cols=101 Identities=18% Similarity=0.265 Sum_probs=47.7
Q ss_pred EEecCCCChHHHHHHHhhcCCCc--EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCccEEEEcC
Q 039591 135 AFVGSGPMPLTSIVMAKNHLKAT--HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEYDCIFLAA 210 (284)
Q Consensus 135 L~iGsGp~G~~ai~la~~~~~~~--~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~fD~V~~~~ 210 (284)
||||+. .|.+++++++...+.. +++++|..+. .+.+++.+++.+ +..+++++++|..+....+ +++|++++++
T Consensus 1 lEiG~~-~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~-~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTY-SGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG-LSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp ---------------------------EEEESS-------------GG-G-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred Cccccc-cccccccccccccccccCCEEEEECCCc-ccccchhhhhcC-CCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 689999 9999999887433333 7999999996 444444444433 5578999999998765444 6899999998
Q ss_pred cCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 211 LVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 211 ~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.. ..+....-++.+.+.|+|||++++.+
T Consensus 78 ~H--~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 DH--SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC--CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 53 23556778999999999999999864
No 172
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.72 E-value=4.9e-07 Score=76.51 Aligned_cols=117 Identities=18% Similarity=0.089 Sum_probs=80.9
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcE---------EEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATH---------FDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE 198 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~---------V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~ 198 (284)
..+++.|+|-=|| +|...+..+. ...+.. ++|.|+|+.+++.|++|++..+ +...+.+.+.|+.+...
T Consensus 26 ~~~~~~vlDP~CG-sGtiliEaa~-~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag-~~~~i~~~~~D~~~l~~ 102 (179)
T PF01170_consen 26 WRPGDVVLDPFCG-SGTILIEAAL-MGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG-VEDYIDFIQWDARELPL 102 (179)
T ss_dssp --TTS-EEETT-T-TSHHHHHHHH-HHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT--CGGEEEEE--GGGGGG
T ss_pred CCCCCEEeecCCC-CCHHHHHHHH-HhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc-cCCceEEEecchhhccc
Confidence 3678899999999 8887777665 334444 9999999999999999998865 66789999999998763
Q ss_pred cCCCccEEEEcCcCCCCHHH---H----HHHHHHHHhccccCcEEEEEeccchhhh
Q 039591 199 KLGEYDCIFLAALVGMSKEE---K----MKIIRHIRKYMKDGGILLVRSAKGARAF 247 (284)
Q Consensus 199 ~l~~fD~V~~~~~~~~~~~~---k----~~~l~~~~~~L~pGG~lv~~~~~g~~~~ 247 (284)
..+.+|+|+.+.+.|.-... . ..+++++.+.+++..++++.....+...
T Consensus 103 ~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~~~~ 158 (179)
T PF01170_consen 103 PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNRELEKA 158 (179)
T ss_dssp TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCHHHH
T ss_pred ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 33789999999988753221 1 4667888888999666666554444433
No 173
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.72 E-value=4.1e-08 Score=81.52 Aligned_cols=80 Identities=13% Similarity=0.216 Sum_probs=62.5
Q ss_pred EEEeCCHHHHHHHHHHHhhcc-CCCCCeEEEEcchhhhhccCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEE
Q 039591 160 DNFDIDEAANNVARRIVATDF-EFEKRMKFLTGDILQVKEKLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLV 238 (284)
Q Consensus 160 ~~vDis~~~~~~A~~~~~~~~-~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~ 238 (284)
+|+|+|++|++.|++..+..+ ....+++|+++|+.+.+.+.+.||+|++....... +++.++++++.++|||||.+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~-~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV-VDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC-CCHHHHHHHHHHHcCcCeEEEE
Confidence 589999999999987654211 11257999999998875555789999987655433 5788999999999999999987
Q ss_pred Ee
Q 039591 239 RS 240 (284)
Q Consensus 239 ~~ 240 (284)
..
T Consensus 80 ~d 81 (160)
T PLN02232 80 LD 81 (160)
T ss_pred EE
Confidence 54
No 174
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.72 E-value=2e-07 Score=84.90 Aligned_cols=82 Identities=13% Similarity=0.195 Sum_probs=67.0
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEE
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCI 206 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V 206 (284)
...++++|+||||| .|..+..+++ .+.+|+++|+|+.+++.+++++...+ ...+++++++|+.+. ++..||+|
T Consensus 33 ~~~~~~~VLEIG~G-~G~LT~~Ll~---~~~~V~avEiD~~li~~l~~~~~~~~-~~~~v~ii~~Dal~~--~~~~~d~V 105 (294)
T PTZ00338 33 AIKPTDTVLEIGPG-TGNLTEKLLQ---LAKKVIAIEIDPRMVAELKKRFQNSP-LASKLEVIEGDALKT--EFPYFDVC 105 (294)
T ss_pred CCCCcCEEEEecCc-hHHHHHHHHH---hCCcEEEEECCHHHHHHHHHHHHhcC-CCCcEEEEECCHhhh--cccccCEE
Confidence 34678899999999 8888888887 46789999999999999999887643 346899999999864 34679999
Q ss_pred EEcCcCCCC
Q 039591 207 FLAALVGMS 215 (284)
Q Consensus 207 ~~~~~~~~~ 215 (284)
+.+.+....
T Consensus 106 vaNlPY~Is 114 (294)
T PTZ00338 106 VANVPYQIS 114 (294)
T ss_pred EecCCcccC
Confidence 988776544
No 175
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.71 E-value=9.3e-08 Score=80.43 Aligned_cols=108 Identities=20% Similarity=0.227 Sum_probs=71.2
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhcc-CCCCCeEEEEcchhhhh----ccCCCc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDF-EFEKRMKFLTGDILQVK----EKLGEY 203 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~-~l~~~v~~~~~D~~~~~----~~l~~f 203 (284)
..+.+|||+||| .|+.++.+++ ..++.+|+..|.++ .++..+.+++..+ ....++.+..-|..+.. .+..+|
T Consensus 44 ~~~~~VLELGaG-~Gl~gi~~a~-~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 44 FRGKRVLELGAG-TGLPGIAAAK-LFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp TTTSEEEETT-T-TSHHHHHHHH-T-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred cCCceEEEECCc-cchhHHHHHh-ccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 678899999999 9999999998 34678999999999 9999999987622 13467888887764421 112579
Q ss_pred cEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 204 DCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 204 D~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+|+.+-.+.. .+.-..+++.+.+.++|+|.+++..
T Consensus 121 D~IlasDv~Y~-~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 121 DVILASDVLYD-EELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp SEEEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred CEEEEecccch-HHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 99997654432 3556889999999999999866544
No 176
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.5e-07 Score=78.88 Aligned_cols=105 Identities=16% Similarity=0.214 Sum_probs=83.5
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHHHhhccC-------C-CCCeEEEEcchhhhhc
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHL-KATHFDNFDIDEAANNVARRIVATDFE-------F-EKRMKFLTGDILQVKE 198 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~-~~~~V~~vDis~~~~~~A~~~~~~~~~-------l-~~~v~~~~~D~~~~~~ 198 (284)
..++.+.|++|+| +|+.+.++++-.. +|..++|||.-++.++.+++++.++-. + ..+..|+.||......
T Consensus 80 L~pG~s~LdvGsG-SGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 80 LQPGASFLDVGSG-SGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred hccCcceeecCCC-ccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence 3789999999999 9999999986222 444559999999999999999876420 1 2358899999987666
Q ss_pred cCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 199 KLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 199 ~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+..+||.|++-+.. .++.+.+.+.|+|||.+++--
T Consensus 159 e~a~YDaIhvGAaa-------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 159 EQAPYDAIHVGAAA-------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred ccCCcceEEEccCc-------cccHHHHHHhhccCCeEEEee
Confidence 66899999998766 456677788899999988765
No 177
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.68 E-value=9.6e-08 Score=80.83 Aligned_cols=95 Identities=13% Similarity=0.147 Sum_probs=69.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCccEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEYDCI 206 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~fD~V 206 (284)
.++.+|||+||| -|-....|.+ .++++..|+|+|++.+..+.++ .+.++++|+.+..... +.||.|
T Consensus 12 ~pgsrVLDLGCG-dG~LL~~L~~--~k~v~g~GvEid~~~v~~cv~r---------Gv~Viq~Dld~gL~~f~d~sFD~V 79 (193)
T PF07021_consen 12 EPGSRVLDLGCG-DGELLAYLKD--EKQVDGYGVEIDPDNVAACVAR---------GVSVIQGDLDEGLADFPDQSFDYV 79 (193)
T ss_pred CCCCEEEecCCC-chHHHHHHHH--hcCCeEEEEecCHHHHHHHHHc---------CCCEEECCHHHhHhhCCCCCccEE
Confidence 788999999999 7876666665 4789999999999998776553 3678999998765433 889999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEE
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~ 239 (284)
+++-..... .....+++++.|. |...++.
T Consensus 80 IlsqtLQ~~-~~P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 80 ILSQTLQAV-RRPDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred ehHhHHHhH-hHHHHHHHHHHHh---cCeEEEE
Confidence 988654221 3456777777644 5454443
No 178
>PRK04148 hypothetical protein; Provisional
Probab=98.68 E-value=3.4e-07 Score=73.49 Aligned_cols=93 Identities=15% Similarity=0.225 Sum_probs=70.3
Q ss_pred CCCCeEEEecCCCChH-HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC-CCccEE
Q 039591 129 VQPKKVAFVGSGPMPL-TSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL-GEYDCI 206 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~-~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l-~~fD~V 206 (284)
..+.+|++|||| .|. .+..|++ .|..|+++|+||.+++.|+++ .++++.+|+++...++ +.+|+|
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~---~G~~ViaIDi~~~aV~~a~~~---------~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKE---SGFDVIVIDINEKAVEKAKKL---------GLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHH---CCCEEEEEECCHHHHHHHHHh---------CCeEEECcCCCCCHHHHhcCCEE
Confidence 456899999999 886 7778887 689999999999999888765 2578899998755554 889999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
++--+. ++-+..+.++++.+ |+-++++.
T Consensus 82 ysirpp----~el~~~~~~la~~~--~~~~~i~~ 109 (134)
T PRK04148 82 YSIRPP----RDLQPFILELAKKI--NVPLIIKP 109 (134)
T ss_pred EEeCCC----HHHHHHHHHHHHHc--CCCEEEEc
Confidence 987654 44455556666554 44555554
No 179
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.67 E-value=6e-08 Score=84.28 Aligned_cols=117 Identities=22% Similarity=0.257 Sum_probs=81.9
Q ss_pred HHHHHHhhccCCCCeEEEecCCCChHHHHHHHhhcCCC--cEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhh
Q 039591 119 ECRILKENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKA--THFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQV 196 (284)
Q Consensus 119 E~~~l~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~--~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~ 196 (284)
|...+.....+.+.+||+|||| .|-|..-+.+ ..+. ..|.+.|.||.+++..+++..... .++.-..-|+..-
T Consensus 60 Efpel~~~~~~~~~~ilEvGCG-vGNtvfPll~-~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e---~~~~afv~Dlt~~ 134 (264)
T KOG2361|consen 60 EFPELLPVDEKSAETILEVGCG-VGNTVFPLLK-TSPNNRLKVYACDFSPRAIELVKKSSGYDE---SRVEAFVWDLTSP 134 (264)
T ss_pred hhHHhhCccccChhhheeeccC-CCcccchhhh-cCCCCCeEEEEcCCChHHHHHHHhccccch---hhhcccceeccch
Confidence 4333333333455589999999 9999888776 4555 789999999999999999865532 5555555555432
Q ss_pred h----ccCCCccEEEEcC-cCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 197 K----EKLGEYDCIFLAA-LVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 197 ~----~~l~~fD~V~~~~-~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
. ...+.+|.|.+-- +....++.....++++.++|||||.|++|+
T Consensus 135 ~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 135 SLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred hccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence 1 1126788764321 122235667899999999999999999986
No 180
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=98.63 E-value=1.5e-07 Score=87.85 Aligned_cols=103 Identities=20% Similarity=0.185 Sum_probs=77.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEc-chhhhhccC---CCcc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTG-DILQVKEKL---GEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~-D~~~~~~~l---~~fD 204 (284)
.++.+|+.+|+||+|+.++.+++ ..+..+|+++|.+++++++|++.... +.+..... +.......+ ..+|
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~-~~Ga~~Viv~d~~~~Rl~~A~~~~g~-----~~~~~~~~~~~~~~~~~~t~g~g~D 240 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAK-LLGASVVIVVDRSPERLELAKEAGGA-----DVVVNPSEDDAGAEILELTGGRGAD 240 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-HcCCceEEEeCCCHHHHHHHHHhCCC-----eEeecCccccHHHHHHHHhCCCCCC
Confidence 44559999999999999999998 56778999999999999999996432 22222222 222222122 3699
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEeccch
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSAKGA 244 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~~g~ 244 (284)
++|.+... ...++++.+.++|||.+++.+..+.
T Consensus 241 ~vie~~G~-------~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 241 VVIEAVGS-------PPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred EEEECCCC-------HHHHHHHHHHhcCCCEEEEEeccCC
Confidence 99999875 5689999999999999999885443
No 181
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.63 E-value=5e-07 Score=80.47 Aligned_cols=89 Identities=18% Similarity=0.319 Sum_probs=66.7
Q ss_pred hccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCcc-
Q 039591 126 NGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYD- 204 (284)
Q Consensus 126 ~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD- 204 (284)
....++++||||||| .|..+..+++ .+.+|+++|+|+.+++.+++.... ..+++++++|+.+... ..||
T Consensus 25 ~~~~~~~~VLEiG~G-~G~lt~~L~~---~~~~v~~iE~d~~~~~~l~~~~~~----~~~v~v~~~D~~~~~~--~~~d~ 94 (253)
T TIGR00755 25 ANVLEGDVVLEIGPG-LGALTEPLLK---RAKKVTAIEIDPRLAEILRKLLSL----YERLEVIEGDALKVDL--PDFPK 94 (253)
T ss_pred cCCCCcCEEEEeCCC-CCHHHHHHHH---hCCcEEEEECCHHHHHHHHHHhCc----CCcEEEEECchhcCCh--hHcCC
Confidence 344678899999999 7888888887 345799999999999999987643 2679999999986533 3566
Q ss_pred --EEEEcCcCCCCHHHHHHHHHHHHh
Q 039591 205 --CIFLAALVGMSKEEKMKIIRHIRK 228 (284)
Q Consensus 205 --~V~~~~~~~~~~~~k~~~l~~~~~ 228 (284)
+|+.+.+.+.. ..++.++..
T Consensus 95 ~~~vvsNlPy~i~----~~il~~ll~ 116 (253)
T TIGR00755 95 QLKVVSNLPYNIS----SPLIFKLLE 116 (253)
T ss_pred cceEEEcCChhhH----HHHHHHHhc
Confidence 77777665433 456666654
No 182
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.62 E-value=2.7e-07 Score=88.53 Aligned_cols=103 Identities=19% Similarity=0.242 Sum_probs=71.9
Q ss_pred CCeEEEecCCCChHHHHHHHhh---cCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 131 PKKVAFVGSGPMPLTSIVMAKN---HLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 131 ~~~VL~iGsGp~G~~ai~la~~---~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
+..|++|||| .|..+...+++ .....+|++||.++.+....++.++..+ ++++|+++.+|+.+...+ .++|+|+
T Consensus 187 ~~vVldVGAG-rGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~-w~~~V~vi~~d~r~v~lp-ekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAG-RGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG-WGDKVTVIHGDMREVELP-EKVDIIV 263 (448)
T ss_dssp T-EEEEES-T-TSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT-TTTTEEEEES-TTTSCHS-S-EEEEE
T ss_pred ceEEEEeCCC-ccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC-CCCeEEEEeCcccCCCCC-CceeEEE
Confidence 5689999999 66655444331 1234689999999999988877765533 778999999999986443 5899999
Q ss_pred EcCc--CCCCHHHHHHHHHHHHhccccCcEEE
Q 039591 208 LAAL--VGMSKEEKMKIIRHIRKYMKDGGILL 237 (284)
Q Consensus 208 ~~~~--~~~~~~~k~~~l~~~~~~L~pGG~lv 237 (284)
+--+ .+.. |--.+.+....+.|||||+++
T Consensus 264 SElLGsfg~n-El~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 264 SELLGSFGDN-ELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp E---BTTBTT-TSHHHHHHHGGGGEEEEEEEE
T ss_pred EeccCCcccc-ccCHHHHHHHHhhcCCCCEEe
Confidence 8642 2222 344678899999999999887
No 183
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=5.5e-08 Score=78.26 Aligned_cols=82 Identities=27% Similarity=0.329 Sum_probs=68.3
Q ss_pred hccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccE
Q 039591 126 NGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDC 205 (284)
Q Consensus 126 ~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~ 205 (284)
++...+++++|+||| .|..++..+- .....|+|+|+||++++.+++|++.+. -++++.++|+.+.....+.||.
T Consensus 44 ygdiEgkkl~DLgcg-cGmLs~a~sm--~~~e~vlGfDIdpeALEIf~rNaeEfE---vqidlLqcdildle~~~g~fDt 117 (185)
T KOG3420|consen 44 YGDIEGKKLKDLGCG-CGMLSIAFSM--PKNESVLGFDIDPEALEIFTRNAEEFE---VQIDLLQCDILDLELKGGIFDT 117 (185)
T ss_pred hccccCcchhhhcCc-hhhhHHHhhc--CCCceEEeeecCHHHHHHHhhchHHhh---hhhheeeeeccchhccCCeEee
Confidence 345788999999999 9998866664 555679999999999999999998743 6789999999876555588999
Q ss_pred EEEcCcCC
Q 039591 206 IFLAALVG 213 (284)
Q Consensus 206 V~~~~~~~ 213 (284)
++.+.+.|
T Consensus 118 aviNppFG 125 (185)
T KOG3420|consen 118 AVINPPFG 125 (185)
T ss_pred EEecCCCC
Confidence 99998775
No 184
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.62 E-value=5.3e-07 Score=81.23 Aligned_cols=88 Identities=17% Similarity=0.252 Sum_probs=66.5
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCC--cc
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGE--YD 204 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~--fD 204 (284)
...++++||||||| .|..+..+++ . +.+|+++|+|+.+++.+++++.. .+++++++|+.+.. +.. +|
T Consensus 39 ~~~~~~~VLEiG~G-~G~lt~~L~~-~--~~~v~avE~d~~~~~~~~~~~~~-----~~v~~i~~D~~~~~--~~~~~~~ 107 (272)
T PRK00274 39 GPQPGDNVLEIGPG-LGALTEPLLE-R--AAKVTAVEIDRDLAPILAETFAE-----DNLTIIEGDALKVD--LSELQPL 107 (272)
T ss_pred CCCCcCeEEEeCCC-ccHHHHHHHH-h--CCcEEEEECCHHHHHHHHHhhcc-----CceEEEEChhhcCC--HHHcCcc
Confidence 34678899999999 7888888888 2 45999999999999999987632 57999999998753 223 48
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhc
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKY 229 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~ 229 (284)
.|+.+.+.... ..++.++...
T Consensus 108 ~vv~NlPY~is----s~ii~~~l~~ 128 (272)
T PRK00274 108 KVVANLPYNIT----TPLLFHLLEE 128 (272)
T ss_pred eEEEeCCccch----HHHHHHHHhc
Confidence 88888766443 4555555543
No 185
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.61 E-value=5.1e-07 Score=81.83 Aligned_cols=111 Identities=15% Similarity=0.130 Sum_probs=86.8
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCcc
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEYD 204 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~fD 204 (284)
...++.+|||.++||.|-++..... ....+.|++.|+++.++...+++++++|. .++.....|........ ..||
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~-~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~--~~v~~~~~D~~~~~~~~~~~~fd 158 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAEL-MGNKGEIVANDISPKRLKRLKENLKRLGV--FNVIVINADARKLDPKKPESKFD 158 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHH-TTTTSEEEEEESSHHHHHHHHHHHHHTT---SSEEEEESHHHHHHHHHHTTTEE
T ss_pred cccccccccccccCCCCceeeeeec-ccchhHHHHhccCHHHHHHHHHHHHhcCC--ceEEEEeeccccccccccccccc
Confidence 3478899999999999988755444 34468999999999999999999999873 67888888988653222 3599
Q ss_pred EEEEcCcC-C--C---C---------------HHHHHHHHHHHHhcc----ccCcEEEEEe
Q 039591 205 CIFLAALV-G--M---S---------------KEEKMKIIRHIRKYM----KDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~-~--~---~---------------~~~k~~~l~~~~~~L----~pGG~lv~~~ 240 (284)
.|+++++. + . . ..-+.++++++.+.+ ||||++++.+
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 99998754 1 1 1 112478999999999 9999999977
No 186
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.61 E-value=4e-07 Score=78.21 Aligned_cols=100 Identities=14% Similarity=0.186 Sum_probs=73.5
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhh-hccCCCccEEEE
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQV-KEKLGEYDCIFL 208 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~-~~~l~~fD~V~~ 208 (284)
.+.-||||||| +|+++-.+.. +|...+++|+|+.|++.|.+. .+. -.++.+|.-+- +...+.||-+++
T Consensus 50 ~~~~iLDIGCG-sGLSg~vL~~---~Gh~wiGvDiSpsML~~a~~~--e~e-----gdlil~DMG~GlpfrpGtFDg~IS 118 (270)
T KOG1541|consen 50 KSGLILDIGCG-SGLSGSVLSD---SGHQWIGVDISPSMLEQAVER--ELE-----GDLILCDMGEGLPFRPGTFDGVIS 118 (270)
T ss_pred CCcEEEEeccC-CCcchheecc---CCceEEeecCCHHHHHHHHHh--hhh-----cCeeeeecCCCCCCCCCccceEEE
Confidence 47789999999 9999988887 789999999999999999972 211 13556666542 233489998875
Q ss_pred cCcC----------CCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALV----------GMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~----------~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
-+.+ +.+..--..+|..++..|++|++-++..
T Consensus 119 ISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 119 ISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred eeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 3322 1112223577888999999999999865
No 187
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.60 E-value=2.4e-07 Score=83.85 Aligned_cols=133 Identities=21% Similarity=0.291 Sum_probs=90.9
Q ss_pred cccchhhhhhHHHH-----HHHHhhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccC
Q 039591 107 PYYGNYVKLASFEC-----RILKENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFE 181 (284)
Q Consensus 107 p~~~~y~~l~~~E~-----~~l~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~ 181 (284)
|....++..+-.|+ ++.++...+.+.+||.+|+||+|+-++..|+ .....+|+.+|+++.+++.|+++ ..
T Consensus 141 Pd~vs~eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Ak-a~GA~~VVi~d~~~~Rle~Ak~~-Ga--- 215 (354)
T KOG0024|consen 141 PDNVSFEEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAK-AMGASDVVITDLVANRLELAKKF-GA--- 215 (354)
T ss_pred CCCCchhhcccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHH-HcCCCcEEEeecCHHHHHHHHHh-CC---
Confidence 44444444444443 2223333488999999999999999999999 67778999999999999999994 22
Q ss_pred CCCCeEEEE-----cchhhhhccC---CCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEeccchhhhcCCCCC
Q 039591 182 FEKRMKFLT-----GDILQVKEKL---GEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSAKGARAFLYPVVE 253 (284)
Q Consensus 182 l~~~v~~~~-----~D~~~~~~~l---~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~~g~~~~lyp~v~ 253 (284)
..+.... .++.+..... ..+|+.|.++.. +..++.....+|+||.+++.. +|.....+|..+
T Consensus 216 --~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~-------~~~~~aai~a~r~gGt~vlvg-~g~~~~~fpi~~ 285 (354)
T KOG0024|consen 216 --TVTDPSSHKSSPQELAELVEKALGKKQPDVTFDCSGA-------EVTIRAAIKATRSGGTVVLVG-MGAEEIQFPIID 285 (354)
T ss_pred --eEEeeccccccHHHHHHHHHhhccccCCCeEEEccCc-------hHHHHHHHHHhccCCEEEEec-cCCCccccChhh
Confidence 1122211 2222222222 459999999887 567788889999999966554 555556666655
Q ss_pred C
Q 039591 254 R 254 (284)
Q Consensus 254 ~ 254 (284)
.
T Consensus 286 v 286 (354)
T KOG0024|consen 286 V 286 (354)
T ss_pred h
Confidence 4
No 188
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.60 E-value=4.8e-07 Score=82.08 Aligned_cols=106 Identities=23% Similarity=0.321 Sum_probs=83.4
Q ss_pred hccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccE
Q 039591 126 NGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDC 205 (284)
Q Consensus 126 ~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~ 205 (284)
+..-.++.|+|+||| .|+.+...|. .+..+|.++|-| +|.+.|+++++. +.+.++|+++.|-+.+...+ ++.|+
T Consensus 173 ~sDF~~kiVlDVGaG-SGILS~FAaq--AGA~~vYAvEAS-~MAqyA~~Lv~~-N~~~~rItVI~GKiEdieLP-Ek~Dv 246 (517)
T KOG1500|consen 173 HSDFQDKIVLDVGAG-SGILSFFAAQ--AGAKKVYAVEAS-EMAQYARKLVAS-NNLADRITVIPGKIEDIELP-EKVDV 246 (517)
T ss_pred ccccCCcEEEEecCC-ccHHHHHHHH--hCcceEEEEehh-HHHHHHHHHHhc-CCccceEEEccCccccccCc-hhccE
Confidence 344678899999999 9999987776 356689999985 688999999987 35789999999999875322 78999
Q ss_pred EEEcCcC-CCCHHHHHHHHHHHHhccccCcEEE
Q 039591 206 IFLAALV-GMSKEEKMKIIRHIRKYMKDGGILL 237 (284)
Q Consensus 206 V~~~~~~-~~~~~~k~~~l~~~~~~L~pGG~lv 237 (284)
|++...- -...+...+-+-++.+.|+|.|...
T Consensus 247 iISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 247 IISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred EEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 9987633 2233555677778889999999875
No 189
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.60 E-value=6.1e-07 Score=84.25 Aligned_cols=100 Identities=16% Similarity=0.167 Sum_probs=83.1
Q ss_pred CeEEEecCCCChHHHHHHHhhcCCC-cEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC-CCccEEEEc
Q 039591 132 KKVAFVGSGPMPLTSIVMAKNHLKA-THFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL-GEYDCIFLA 209 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~la~~~~~~-~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l-~~fD~V~~~ 209 (284)
-+|||..|| +|.-++.+++ ..+| .+|+++|+|+.+++.+++|++..+ . .+++++++|+....... ..||+|+++
T Consensus 46 ~~vLD~faG-sG~rgir~a~-e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-~-~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 46 INIADALSA-SGIRAIRYAH-EIEGVREVFANDINPKAVESIKNNVEYNS-V-ENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CEEEECCCc-hhHHHHHHHh-hCCCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 589999999 9999999998 3334 589999999999999999997644 3 46899999998765443 579999999
Q ss_pred CcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 210 ALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 210 ~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
. .|.. ..+++.+.+.+++||+|.+..
T Consensus 122 P-fGs~----~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 122 P-FGTP----APFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C-CCCc----HHHHHHHHHhcccCCEEEEEe
Confidence 8 4543 578999999999999999874
No 190
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.56 E-value=8.1e-07 Score=81.91 Aligned_cols=112 Identities=22% Similarity=0.207 Sum_probs=90.7
Q ss_pred HHHHHHhhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc
Q 039591 119 ECRILKENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE 198 (284)
Q Consensus 119 E~~~l~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~ 198 (284)
|..-+.+.. ..|.+|+|.=+| .|..++.+|+ .....|+++|+||.+++..++|++. +.+..++..++||+.+...
T Consensus 178 ER~Rva~~v-~~GE~V~DmFAG-VGpfsi~~Ak--~g~~~V~A~diNP~A~~~L~eNi~L-N~v~~~v~~i~gD~rev~~ 252 (341)
T COG2520 178 ERARVAELV-KEGETVLDMFAG-VGPFSIPIAK--KGRPKVYAIDINPDAVEYLKENIRL-NKVEGRVEPILGDAREVAP 252 (341)
T ss_pred HHHHHHhhh-cCCCEEEEccCC-cccchhhhhh--cCCceEEEEecCHHHHHHHHHHHHh-cCccceeeEEeccHHHhhh
Confidence 544443322 569999999999 9999999998 2334499999999999999999876 5577779999999999877
Q ss_pred cCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 199 KLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 199 ~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.++.+|.|++..+.. ..+++..+.+.+++||++-+-.
T Consensus 253 ~~~~aDrIim~~p~~-----a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 253 ELGVADRIIMGLPKS-----AHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred ccccCCEEEeCCCCc-----chhhHHHHHHHhhcCcEEEEEe
Confidence 668899999987653 2578888899999999987654
No 191
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=2e-06 Score=82.21 Aligned_cols=100 Identities=16% Similarity=0.250 Sum_probs=83.1
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC---CCccE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL---GEYDC 205 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l---~~fD~ 205 (284)
.++++|+|+=|| .|..++.+|+ ...+|+|+|+++++++.|+++++..+ + ++++|..+|+.+..... ..+|.
T Consensus 292 ~~~~~vlDlYCG-vG~f~l~lA~---~~~~V~gvEi~~~aV~~A~~NA~~n~-i-~N~~f~~~~ae~~~~~~~~~~~~d~ 365 (432)
T COG2265 292 AGGERVLDLYCG-VGTFGLPLAK---RVKKVHGVEISPEAVEAAQENAAANG-I-DNVEFIAGDAEEFTPAWWEGYKPDV 365 (432)
T ss_pred cCCCEEEEeccC-CChhhhhhcc---cCCEEEEEecCHHHHHHHHHHHHHcC-C-CcEEEEeCCHHHHhhhccccCCCCE
Confidence 577899999999 9999999997 67899999999999999999998865 4 55999999999876654 47899
Q ss_pred EEEcCcC-CCCHHHHHHHHHHHHhccccCcEEEEE
Q 039591 206 IFLAALV-GMSKEEKMKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 206 V~~~~~~-~~~~~~k~~~l~~~~~~L~pGG~lv~~ 239 (284)
|++|.+- |.. .++++.+. .++|..++.+.
T Consensus 366 VvvDPPR~G~~----~~~lk~l~-~~~p~~IvYVS 395 (432)
T COG2265 366 VVVDPPRAGAD----REVLKQLA-KLKPKRIVYVS 395 (432)
T ss_pred EEECCCCCCCC----HHHHHHHH-hcCCCcEEEEe
Confidence 9999875 655 67788777 56666655553
No 192
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.52 E-value=3.8e-07 Score=83.40 Aligned_cols=103 Identities=23% Similarity=0.342 Sum_probs=77.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
-.++.||||||| +|..++.-|+ .+..+|+++|.|.-+ +.|++.+.. +++++.|+++.|.+.+...+.+++|+|++
T Consensus 59 f~dK~VlDVGcG-tGILS~F~ak--AGA~~V~aVe~S~ia-~~a~~iv~~-N~~~~ii~vi~gkvEdi~LP~eKVDiIvS 133 (346)
T KOG1499|consen 59 FKDKTVLDVGCG-TGILSMFAAK--AGARKVYAVEASSIA-DFARKIVKD-NGLEDVITVIKGKVEDIELPVEKVDIIVS 133 (346)
T ss_pred cCCCEEEEcCCC-ccHHHHHHHH--hCcceEEEEechHHH-HHHHHHHHh-cCccceEEEeecceEEEecCccceeEEee
Confidence 568899999999 9999998887 346689999998777 999999987 44788899999999987444589999997
Q ss_pred cCcCCC--CHHHH-HHHHHHHHhccccCcEEE
Q 039591 209 AALVGM--SKEEK-MKIIRHIRKYMKDGGILL 237 (284)
Q Consensus 209 ~~~~~~--~~~~k-~~~l~~~~~~L~pGG~lv 237 (284)
.- -|. .-+.. ..++-.=-++|+|||.+.
T Consensus 134 EW-MGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 134 EW-MGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hh-hhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 52 110 00111 122222238999999886
No 193
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.50 E-value=1.7e-07 Score=80.43 Aligned_cols=105 Identities=23% Similarity=0.310 Sum_probs=78.3
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC----CCccE
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL----GEYDC 205 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l----~~fD~ 205 (284)
....|+|.=|| .|-.++.+|. .+..|+++|+||..++.|+.|++-.| ..++|+|++||+.+....+ ..+|+
T Consensus 94 ~~~~iidaf~g-~gGntiqfa~---~~~~VisIdiDPikIa~AkhNaeiYG-I~~rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 94 NAEVIVDAFCG-VGGNTIQFAL---QGPYVIAIDIDPVKIACARHNAEVYG-VPDRITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred Ccchhhhhhhc-CCchHHHHHH---hCCeEEEEeccHHHHHHHhccceeec-CCceeEEEechHHHHHHHHhhhhheeee
Confidence 55678877777 6667888886 78999999999999999999999888 6779999999999865443 34779
Q ss_pred EEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
||...+-|-+.--+.. .-.+..++.|.|.-+.+.
T Consensus 169 vf~sppwggp~y~~~~-~~DL~~~~~p~~~~~fk~ 202 (263)
T KOG2730|consen 169 VFLSPPWGGPSYLRAD-VYDLETHLKPMGTKIFKS 202 (263)
T ss_pred eecCCCCCCcchhhhh-hhhhhhhcchhHHHHHHh
Confidence 9988766443222233 334667777776655554
No 194
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.49 E-value=5.7e-07 Score=83.13 Aligned_cols=109 Identities=20% Similarity=0.248 Sum_probs=73.3
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccC--------CCCCeEEEEcchhhhh--cc
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFE--------FEKRMKFLTGDILQVK--EK 199 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~--------l~~~v~~~~~D~~~~~--~~ 199 (284)
++.+|||+||| =|....-+.+ ..-..++|+|++++.++.|++..+.+.. ..-...|+.+|..... ..
T Consensus 62 ~~~~VLDl~CG-kGGDL~Kw~~--~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~ 138 (331)
T PF03291_consen 62 PGLTVLDLCCG-KGGDLQKWQK--AKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREK 138 (331)
T ss_dssp TT-EEEEET-T-TTTTHHHHHH--TT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCT
T ss_pred CCCeEEEecCC-CchhHHHHHh--cCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhh
Confidence 78899999999 7777777766 3557899999999999999998732210 1134678888876421 11
Q ss_pred C----CCccEEEEcCcCC---CCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 200 L----GEYDCIFLAALVG---MSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 200 l----~~fD~V~~~~~~~---~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
+ .+||+|=+--..| .+.+.-..+++++.+.|+|||+++....
T Consensus 139 ~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 139 LPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp SSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 1 4899996543221 2323345599999999999999998774
No 195
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.46 E-value=2.1e-07 Score=80.98 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=71.4
Q ss_pred CeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcCc
Q 039591 132 KKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAAL 211 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~~ 211 (284)
+.++|+||| .|.+++.+|. + --+|+++|+|++|+++|++....- ......++...+..++...-+..|+|.++-.
T Consensus 35 ~~a~DvG~G-~Gqa~~~iae-~--~k~VIatD~s~~mL~~a~k~~~~~-y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 35 RLAWDVGTG-NGQAARGIAE-H--YKEVIATDVSEAMLKVAKKHPPVT-YCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred ceEEEeccC-CCcchHHHHH-h--hhhheeecCCHHHHHHhhcCCCcc-cccCCccccccccccccCCCcceeeehhhhh
Confidence 378999999 7899999998 3 367999999999999998864321 0112233333333333222368999998877
Q ss_pred CCCCHHHHHHHHHHHHhccccCc-EEEE
Q 039591 212 VGMSKEEKMKIIRHIRKYMKDGG-ILLV 238 (284)
Q Consensus 212 ~~~~~~~k~~~l~~~~~~L~pGG-~lv~ 238 (284)
+++. +-+++++.+.+.||+.| ++++
T Consensus 110 ~HWF--dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 110 VHWF--DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred HHhh--chHHHHHHHHHHcCCCCCEEEE
Confidence 7665 44789999999999988 5554
No 196
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.45 E-value=7.6e-07 Score=77.11 Aligned_cols=99 Identities=16% Similarity=0.206 Sum_probs=83.2
Q ss_pred CCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcC
Q 039591 131 PKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAA 210 (284)
Q Consensus 131 ~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~ 210 (284)
+++++||||| .|+-++.+|- ..|+.+||-+|.....+..-+.....++ + .+++++++.+.+...+...||+|.+-+
T Consensus 68 ~~~~~DIGSG-aGfPGipLAI-~~p~~~vtLles~~Kk~~FL~~~~~eL~-L-~nv~i~~~RaE~~~~~~~~~D~vtsRA 143 (215)
T COG0357 68 AKRVLDIGSG-AGFPGIPLAI-AFPDLKVTLLESLGKKIAFLREVKKELG-L-ENVEIVHGRAEEFGQEKKQYDVVTSRA 143 (215)
T ss_pred CCEEEEeCCC-CCCchhhHHH-hccCCcEEEEccCchHHHHHHHHHHHhC-C-CCeEEehhhHhhcccccccCcEEEeeh
Confidence 6899999999 8999999985 5799999999999999999999999887 3 679999999987643321199999987
Q ss_pred cCCCCHHHHHHHHHHHHhccccCcEEEE
Q 039591 211 LVGMSKEEKMKIIRHIRKYMKDGGILLV 238 (284)
Q Consensus 211 ~~~~~~~~k~~~l~~~~~~L~pGG~lv~ 238 (284)
...+ ..+.+-+...+++||.++.
T Consensus 144 va~L-----~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 144 VASL-----NVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ccch-----HHHHHHHHHhcccCCcchh
Confidence 6532 5788889999999887653
No 197
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=4.4e-06 Score=69.83 Aligned_cols=107 Identities=13% Similarity=0.170 Sum_probs=83.2
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
..+.-++||||| +|.-+-.|++...++....+.|++|.+++..++-+...+ .++..++.|+...... ++.|+++.
T Consensus 42 ~~~~i~lEIG~G-SGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~---~~~~~V~tdl~~~l~~-~~VDvLvf 116 (209)
T KOG3191|consen 42 HNPEICLEIGCG-SGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR---VHIDVVRTDLLSGLRN-ESVDVLVF 116 (209)
T ss_pred cCceeEEEecCC-cchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC---CccceeehhHHhhhcc-CCccEEEE
Confidence 447889999999 999998898866677889999999999999999877633 5688999999876554 89999998
Q ss_pred cCcCCC-C-------------------HHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGM-S-------------------KEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~-~-------------------~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+.+.-. . .+-..+++.++-..|.|.|.+.+..
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~ 168 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA 168 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence 764311 1 0112567777778889999887765
No 198
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.45 E-value=5.2e-06 Score=76.31 Aligned_cols=140 Identities=19% Similarity=0.105 Sum_probs=100.2
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEc-chhhhhccCCCccEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTG-DILQVKEKLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~-D~~~~~~~l~~fD~V~ 207 (284)
++|+.|||-=|| +|-..+.... -|++++|.|+|..|++-|+.|++..+ + ....+... |+...+.+-..+|.|.
T Consensus 196 ~~G~~vlDPFcG-TGgiLiEagl---~G~~viG~Did~~mv~gak~Nl~~y~-i-~~~~~~~~~Da~~lpl~~~~vdaIa 269 (347)
T COG1041 196 KRGELVLDPFCG-TGGILIEAGL---MGARVIGSDIDERMVRGAKINLEYYG-I-EDYPVLKVLDATNLPLRDNSVDAIA 269 (347)
T ss_pred ccCCEeecCcCC-ccHHHHhhhh---cCceEeecchHHHHHhhhhhhhhhhC-c-CceeEEEecccccCCCCCCccceEE
Confidence 788999999999 7766666664 79999999999999999999999876 3 45666666 9887653224499999
Q ss_pred EcCcCCCCH--------HHHHHHHHHHHhccccCcEEEEEeccchhhhcCCCCCCCCCCCcEEEEEEc--CCCceeeEEE
Q 039591 208 LAALVGMSK--------EEKMKIIRHIRKYMKDGGILLVRSAKGARAFLYPVVERHDLLDFEVLSIFH--PIDEVINSVI 277 (284)
Q Consensus 208 ~~~~~~~~~--------~~k~~~l~~~~~~L~pGG~lv~~~~~g~~~~lyp~v~~~~l~gf~~~~~~~--p~~~v~nsvi 277 (284)
.+.+.|... +--.++++.+.++|++||++++-.. +...+...-.||.++..+. -++...-++.
T Consensus 270 tDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p-------~~~~~~~~~~~f~v~~~~~~~~H~sLtR~i~ 342 (347)
T COG1041 270 TDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP-------RDPRHELEELGFKVLGRFTMRVHGSLTRVIY 342 (347)
T ss_pred ecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC-------CcchhhHhhcCceEEEEEEEeecCceEEEEE
Confidence 998876432 2236889999999999999998653 1111111226899887643 2444444455
Q ss_pred EEee
Q 039591 278 LVRK 281 (284)
Q Consensus 278 ~~rk 281 (284)
++|+
T Consensus 343 v~~~ 346 (347)
T COG1041 343 VVRK 346 (347)
T ss_pred EEec
Confidence 5554
No 199
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.44 E-value=4.3e-06 Score=72.20 Aligned_cols=112 Identities=13% Similarity=0.164 Sum_probs=68.1
Q ss_pred HHhhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhh-------ccCCCCCeEEEEcchhh
Q 039591 123 LKENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVAT-------DFEFEKRMKFLTGDILQ 195 (284)
Q Consensus 123 l~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~-------~~~l~~~v~~~~~D~~~ 195 (284)
+......+++..+||||| .|-..+..|. ..+-.+.+|||+.+...+.|+.+.+. +|.-..++++..+|+.+
T Consensus 35 l~~~~l~~~dvF~DlGSG-~G~~v~~aal-~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~ 112 (205)
T PF08123_consen 35 LDELNLTPDDVFYDLGSG-VGNVVFQAAL-QTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD 112 (205)
T ss_dssp HHHTT--TT-EEEEES-T-TSHHHHHHHH-HH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT
T ss_pred HHHhCCCCCCEEEECCCC-CCHHHHHHHH-HcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc
Confidence 344445778899999999 9988877775 23333599999999999999865432 22123568899999875
Q ss_pred hh--c-cCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEE
Q 039591 196 VK--E-KLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLV 238 (284)
Q Consensus 196 ~~--~-~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~ 238 (284)
.. . .+...|+||+++.. ..++...-+......||+|.+++.
T Consensus 113 ~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 113 PDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 32 1 13678999999865 234444555777789999999885
No 200
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.44 E-value=3.2e-06 Score=77.63 Aligned_cols=110 Identities=14% Similarity=0.218 Sum_probs=85.6
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHH--HhhccC---CCCCeEEEEcchhhhhccC-C
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLK-ATHFDNFDIDEAANNVARRI--VATDFE---FEKRMKFLTGDILQVKEKL-G 201 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~-~~~V~~vDis~~~~~~A~~~--~~~~~~---l~~~v~~~~~D~~~~~~~l-~ 201 (284)
+..++||.+|.| -|+.+..+.| +| -.+|+-+|+||.|++.++++ ..+.+. -+.|++++..|+..+...- .
T Consensus 288 ~~a~~vLvlGGG-DGLAlRellk--yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~ 364 (508)
T COG4262 288 RGARSVLVLGGG-DGLALRELLK--YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAAD 364 (508)
T ss_pred cccceEEEEcCC-chHHHHHHHh--CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcc
Confidence 456799999999 9999999998 67 46899999999999999943 333321 2468999999999876443 6
Q ss_pred CccEEEEcCcCCCC----HHHHHHHHHHHHhccccCcEEEEEec
Q 039591 202 EYDCIFLAALVGMS----KEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 202 ~fD~V~~~~~~~~~----~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
.||+|+.+-.-... .--..+++.-+.++|+++|++++...
T Consensus 365 ~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 365 MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred cccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 89999997543111 12347899999999999999999763
No 201
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=2.7e-06 Score=75.24 Aligned_cols=104 Identities=19% Similarity=0.159 Sum_probs=86.0
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCccE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEYDC 205 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~fD~ 205 (284)
..++.+|++-|+| .|-.+..+++...|-++++.+|..+.+.+.|++-++..+ +++++++..-|+...-... ..+|.
T Consensus 103 i~PGsvV~EsGTG-SGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg-i~~~vt~~hrDVc~~GF~~ks~~aDa 180 (314)
T KOG2915|consen 103 IRPGSVVLESGTG-SGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG-IGDNVTVTHRDVCGSGFLIKSLKADA 180 (314)
T ss_pred CCCCCEEEecCCC-cchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC-CCcceEEEEeecccCCccccccccce
Confidence 4899999999999 788888888867888999999999999999999999876 7899999999987533322 67999
Q ss_pred EEEcCcCCCCHHHHHHHHHHHHhccccCc-EEEEE
Q 039591 206 IFLAALVGMSKEEKMKIIRHIRKYMKDGG-ILLVR 239 (284)
Q Consensus 206 V~~~~~~~~~~~~k~~~l~~~~~~L~pGG-~lv~~ 239 (284)
||++.+.. ...+-++++.+|.+| +++-.
T Consensus 181 VFLDlPaP------w~AiPha~~~lk~~g~r~csF 209 (314)
T KOG2915|consen 181 VFLDLPAP------WEAIPHAAKILKDEGGRLCSF 209 (314)
T ss_pred EEEcCCCh------hhhhhhhHHHhhhcCceEEec
Confidence 99997653 567778888888888 45443
No 202
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.42 E-value=5.2e-06 Score=71.71 Aligned_cols=109 Identities=24% Similarity=0.258 Sum_probs=78.1
Q ss_pred EEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcCcCC
Q 039591 134 VAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAALVG 213 (284)
Q Consensus 134 VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~~~~ 213 (284)
|+||||- -|+..+.|.+ .....+++++|+++.-++.|+++++..+ +.++++++.+|..+....-+..|.|++++.-|
T Consensus 1 vaDIGtD-HgyLpi~L~~-~~~~~~~ia~DI~~gpL~~A~~~i~~~~-l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTD-HGYLPIYLLK-NGKAPKAIAVDINPGPLEKAKENIAKYG-LEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-S-TTHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHTT--TTTEEEEE-SGGGG--GGG---EEEEEEE-H
T ss_pred Cceeccc-hhHHHHHHHh-cCCCCEEEEEeCCHHHHHHHHHHHHHcC-CcccEEEEECCcccccCCCCCCCEEEEecCCH
Confidence 6899999 9999999998 4455579999999999999999999866 78999999999887544334489999987553
Q ss_pred CCHHHHHHHHHHHHhccccCcEEEEEec---cchhhhc
Q 039591 214 MSKEEKMKIIRHIRKYMKDGGILLVRSA---KGARAFL 248 (284)
Q Consensus 214 ~~~~~k~~~l~~~~~~L~pGG~lv~~~~---~g~~~~l 248 (284)
.--.++++.....++....+++.-. ..+|..+
T Consensus 78 ---~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L 112 (205)
T PF04816_consen 78 ---ELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWL 112 (205)
T ss_dssp ---HHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHH
T ss_pred ---HHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHH
Confidence 4457888888777777777887653 3345544
No 203
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.42 E-value=3.3e-06 Score=69.71 Aligned_cols=106 Identities=10% Similarity=0.212 Sum_probs=82.9
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC-----C
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL-----G 201 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l-----~ 201 (284)
....+.-|||+|.| +|..+-.+.++..+...++++|.|++.+..-.+... .++++.||+.+....+ .
T Consensus 45 ~pesglpVlElGPG-TGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p-------~~~ii~gda~~l~~~l~e~~gq 116 (194)
T COG3963 45 DPESGLPVLELGPG-TGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP-------GVNIINGDAFDLRTTLGEHKGQ 116 (194)
T ss_pred CcccCCeeEEEcCC-ccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC-------CccccccchhhHHHHHhhcCCC
Confidence 34678899999999 777766655535677889999999999988777642 3669999998754222 5
Q ss_pred CccEEEEcCcC-CCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 202 EYDCIFLAALV-GMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 202 ~fD~V~~~~~~-~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.||.|+++.+. ..+.....++++.+...+++||.++-.+
T Consensus 117 ~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 117 FFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred eeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 69999998755 4455667899999999999999988655
No 204
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=8.4e-06 Score=72.52 Aligned_cols=100 Identities=16% Similarity=0.194 Sum_probs=74.4
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc-CCCccE
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK-LGEYDC 205 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~-l~~fD~ 205 (284)
...+++.|+|||+| .|..+..|++ .+.+|+++|+|+..++.-++.... .++++++.+|+...... +.+++.
T Consensus 27 ~~~~~d~VlEIGpG-~GaLT~~Ll~---~~~~v~aiEiD~~l~~~L~~~~~~----~~n~~vi~~DaLk~d~~~l~~~~~ 98 (259)
T COG0030 27 NISPGDNVLEIGPG-LGALTEPLLE---RAARVTAIEIDRRLAEVLKERFAP----YDNLTVINGDALKFDFPSLAQPYK 98 (259)
T ss_pred CCCCCCeEEEECCC-CCHHHHHHHh---hcCeEEEEEeCHHHHHHHHHhccc----ccceEEEeCchhcCcchhhcCCCE
Confidence 34668999999999 7777777777 678899999999999999988653 37899999999865321 127899
Q ss_pred EEEcCcCCCCHHHHHHHHHHHHhcccc--CcEEEE
Q 039591 206 IFLAALVGMSKEEKMKIIRHIRKYMKD--GGILLV 238 (284)
Q Consensus 206 V~~~~~~~~~~~~k~~~l~~~~~~L~p--GG~lv~ 238 (284)
|+.+-+.... ..++.++.+.=.+ ..++++
T Consensus 99 vVaNlPY~Is----spii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 99 VVANLPYNIS----SPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred EEEcCCCccc----HHHHHHHHhccCccceEEEEe
Confidence 9999887665 4555555544333 445554
No 205
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.40 E-value=2e-06 Score=78.20 Aligned_cols=82 Identities=21% Similarity=0.141 Sum_probs=64.3
Q ss_pred hccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC----C
Q 039591 126 NGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL----G 201 (284)
Q Consensus 126 ~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l----~ 201 (284)
+...++..++|.+|| .|..+..+++...+.++|+|+|+|+++++.|++.+.. . .+++++++|..++...+ .
T Consensus 15 L~~~pg~~vlD~TlG-~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~---~ri~~i~~~f~~l~~~l~~~~~ 89 (296)
T PRK00050 15 LAIKPDGIYVDGTFG-GGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-F---GRFTLVHGNFSNLKEVLAEGLG 89 (296)
T ss_pred hCCCCCCEEEEeCcC-ChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-C---CcEEEEeCCHHHHHHHHHcCCC
Confidence 344677899999999 7888888887322368999999999999999988654 2 68999999998764333 2
Q ss_pred CccEEEEcCcC
Q 039591 202 EYDCIFLAALV 212 (284)
Q Consensus 202 ~fD~V~~~~~~ 212 (284)
.+|.|+.+-++
T Consensus 90 ~vDgIl~DLGv 100 (296)
T PRK00050 90 KVDGILLDLGV 100 (296)
T ss_pred ccCEEEECCCc
Confidence 79999986443
No 206
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.39 E-value=8e-07 Score=80.50 Aligned_cols=110 Identities=19% Similarity=0.225 Sum_probs=81.4
Q ss_pred CCeEEEecCCCChHHHHHHHhh---cC----CCcEEEEEeCCHHHHHHHHHHHh------------------h----c--
Q 039591 131 PKKVAFVGSGPMPLTSIVMAKN---HL----KATHFDNFDIDEAANNVARRIVA------------------T----D-- 179 (284)
Q Consensus 131 ~~~VL~iGsGp~G~~ai~la~~---~~----~~~~V~~vDis~~~~~~A~~~~~------------------~----~-- 179 (284)
+-+|.-.||+ +|-.+..+|-. .. ...+|+|.|+|+.+++.|++-.= . .
T Consensus 116 ~irIWSAgCS-tGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 116 EYRVWSAAAS-TGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CEEEEEcccc-CCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 4699999999 88765554431 11 13679999999999999998620 0 0
Q ss_pred -----cCCCCCeEEEEcchhhhhcc-CCCccEEEEcC-cCCCCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 180 -----FEFEKRMKFLTGDILQVKEK-LGEYDCIFLAA-LVGMSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 180 -----~~l~~~v~~~~~D~~~~~~~-l~~fD~V~~~~-~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
..+...|+|...|+.+.... .+.||+|++-. +....++.+.++++.+.+.|+|||+|++-.+
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 01336789999999863222 37899999855 3466678899999999999999999988553
No 207
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.36 E-value=3.3e-06 Score=82.49 Aligned_cols=109 Identities=16% Similarity=0.159 Sum_probs=87.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCccEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEYDCI 206 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~fD~V 206 (284)
..+..+|||||| .|-..+.+|+ ..|...++|+|+....+..|.+.....+ + .++.++++|+......+ +.+|.|
T Consensus 346 ~~~p~~lEIG~G-~G~~~~~~A~-~~p~~~~iGiE~~~~~~~~~~~~~~~~~-l-~N~~~~~~~~~~~~~~~~~~sv~~i 421 (506)
T PRK01544 346 EKRKVFLEIGFG-MGEHFINQAK-MNPDALFIGVEVYLNGVANVLKLAGEQN-I-TNFLLFPNNLDLILNDLPNNSLDGI 421 (506)
T ss_pred CCCceEEEECCC-chHHHHHHHH-hCCCCCEEEEEeeHHHHHHHHHHHHHcC-C-CeEEEEcCCHHHHHHhcCcccccEE
Confidence 345688999999 9999999998 6799999999999999999988876645 4 67889999876443333 679999
Q ss_pred EEcCcCCCCHHH-------HHHHHHHHHhccccCcEEEEEec
Q 039591 207 FLAALVGMSKEE-------KMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 207 ~~~~~~~~~~~~-------k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
++.-+-.|++.. ...+++.+++.|+|||.+-+.+.
T Consensus 422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred EEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 987665444211 27899999999999999998873
No 208
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.35 E-value=4e-06 Score=72.37 Aligned_cols=106 Identities=15% Similarity=0.235 Sum_probs=75.9
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEc
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLA 209 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~ 209 (284)
...+.||.|+| +|--+-.+.. .---+|..+|..+..++.|++.+.... ....++.+.-+.++.++.++||+|++-
T Consensus 55 ~~~~alDcGAG-IGRVTk~lLl--~~f~~VDlVEp~~~Fl~~a~~~l~~~~--~~v~~~~~~gLQ~f~P~~~~YDlIW~Q 129 (218)
T PF05891_consen 55 KFNRALDCGAG-IGRVTKGLLL--PVFDEVDLVEPVEKFLEQAKEYLGKDN--PRVGEFYCVGLQDFTPEEGKYDLIWIQ 129 (218)
T ss_dssp --SEEEEET-T-TTHHHHHTCC--CC-SEEEEEES-HHHHHHHHHHTCCGG--CCEEEEEES-GGG----TT-EEEEEEE
T ss_pred CcceEEecccc-cchhHHHHHH--HhcCEeEEeccCHHHHHHHHHHhcccC--CCcceEEecCHhhccCCCCcEeEEEeh
Confidence 45789999999 9988865543 123579999999999999998766522 245688888888876555799999975
Q ss_pred C-cCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 210 A-LVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 210 ~-~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
= ..+.+.++-.++++++.+.|+|||+|++..
T Consensus 130 W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 130 WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 3 335677888999999999999999999976
No 209
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.35 E-value=1.6e-06 Score=74.36 Aligned_cols=115 Identities=19% Similarity=0.276 Sum_probs=72.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhh--c----CC--CcEEEEEeCCHHHHHHHHHHHh---hc----------------cC
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKN--H----LK--ATHFDNFDIDEAANNVARRIVA---TD----------------FE 181 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~--~----~~--~~~V~~vDis~~~~~~A~~~~~---~~----------------~~ 181 (284)
..+-+|.-.||+ +|-.+..+|-. . .. ..+|+|.|+|+.+++.|++-.= .+ ++
T Consensus 30 ~~~lrIWSagCS-tGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~ 108 (196)
T PF01739_consen 30 GRPLRIWSAGCS-TGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGG 108 (196)
T ss_dssp -S-EEEEETT-T-TTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CC
T ss_pred CCCeEEEECCCC-CChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCC
Confidence 356799999999 99776555431 1 11 3689999999999999986320 00 00
Q ss_pred -------CCCCeEEEEcchhhhhccCCCccEEEEcC-cCCCCHHHHHHHHHHHHhccccCcEEEEEeccch
Q 039591 182 -------FEKRMKFLTGDILQVKEKLGEYDCIFLAA-LVGMSKEEKMKIIRHIRKYMKDGGILLVRSAKGA 244 (284)
Q Consensus 182 -------l~~~v~~~~~D~~~~~~~l~~fD~V~~~~-~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~~g~ 244 (284)
+.++|+|...|+.+.....+.||+|++-. +.....+.+.++++.+.+.|+|||.|++-.+..+
T Consensus 109 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE~l 179 (196)
T PF01739_consen 109 GYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSESL 179 (196)
T ss_dssp CTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT--S
T ss_pred ceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCccC
Confidence 23468999999987333348999999976 4466778899999999999999999999664443
No 210
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=98.35 E-value=3.6e-06 Score=77.90 Aligned_cols=100 Identities=19% Similarity=0.218 Sum_probs=72.4
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccE
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDC 205 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~ 205 (284)
...++++|+..|+|++|+.++.+|+ . .|+ +|+++|.+++..+.|+++ | ...-+.....+..+.....+.+|+
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak-~-~G~~~Vi~~~~~~~~~~~a~~l----G-a~~vi~~~~~~~~~~~~~~g~~D~ 238 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVK-T-LGAAEIVCADVSPRSLSLAREM----G-ADKLVNPQNDDLDHYKAEKGYFDV 238 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH-H-cCCcEEEEEeCCHHHHHHHHHc----C-CcEEecCCcccHHHHhccCCCCCE
Confidence 3457899999999999999999998 3 455 799999999999998875 3 111122222233332222245999
Q ss_pred EEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
||.+... ...++.+.+.|++||+++..+
T Consensus 239 vid~~G~-------~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 239 SFEVSGH-------PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EEECCCC-------HHHHHHHHHHhhcCCEEEEEc
Confidence 9988654 356778889999999999876
No 211
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.34 E-value=7.5e-06 Score=76.49 Aligned_cols=101 Identities=24% Similarity=0.252 Sum_probs=67.0
Q ss_pred hccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc------
Q 039591 126 NGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK------ 199 (284)
Q Consensus 126 ~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~------ 199 (284)
.....+.+|+|+-|| +|..++.+|+ ...+|+|+|+++++++.|+++++..+ + ++++|+++++.+....
T Consensus 192 ~l~~~~~~vlDlycG-~G~fsl~la~---~~~~V~gvE~~~~av~~A~~Na~~N~-i-~n~~f~~~~~~~~~~~~~~~r~ 265 (352)
T PF05958_consen 192 WLDLSKGDVLDLYCG-VGTFSLPLAK---KAKKVIGVEIVEEAVEDARENAKLNG-I-DNVEFIRGDAEDFAKALAKARE 265 (352)
T ss_dssp HCTT-TTEEEEES-T-TTCCHHHHHC---CSSEEEEEES-HHHHHHHHHHHHHTT----SEEEEE--SHHCCCHHCCS-G
T ss_pred HhhcCCCcEEEEeec-CCHHHHHHHh---hCCeEEEeeCCHHHHHHHHHHHHHcC-C-CcceEEEeeccchhHHHHhhHH
Confidence 333334489999999 9999999998 66899999999999999999988744 4 6899999887654211
Q ss_pred --------C--CCccEEEEcCcC-CCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 200 --------L--GEYDCIFLAALV-GMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 200 --------l--~~fD~V~~~~~~-~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+ ..+|+|++|++- |.. ..+++.+.+ + ..+++.+
T Consensus 266 ~~~~~~~~~~~~~~d~vilDPPR~G~~----~~~~~~~~~-~---~~ivYvS 309 (352)
T PF05958_consen 266 FNRLKGIDLKSFKFDAVILDPPRAGLD----EKVIELIKK-L---KRIVYVS 309 (352)
T ss_dssp GTTGGGS-GGCTTESEEEE---TT-SC----HHHHHHHHH-S---SEEEEEE
T ss_pred HHhhhhhhhhhcCCCEEEEcCCCCCch----HHHHHHHhc-C---CeEEEEE
Confidence 1 258999999875 555 445554443 2 3677766
No 212
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.26 E-value=1.2e-05 Score=68.97 Aligned_cols=110 Identities=16% Similarity=0.218 Sum_probs=88.6
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCccE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEYDC 205 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~fD~ 205 (284)
..++.+||.||-| +|+..-.+-+ .+..+=+-+|..|....+-|...-.. .++|.+..|-..+....+ +.||-
T Consensus 99 ~tkggrvLnVGFG-MgIidT~iQe--~~p~~H~IiE~hp~V~krmr~~gw~e---k~nViil~g~WeDvl~~L~d~~FDG 172 (271)
T KOG1709|consen 99 STKGGRVLNVGFG-MGIIDTFIQE--APPDEHWIIEAHPDVLKRMRDWGWRE---KENVIILEGRWEDVLNTLPDKHFDG 172 (271)
T ss_pred hhCCceEEEeccc-hHHHHHHHhh--cCCcceEEEecCHHHHHHHHhccccc---ccceEEEecchHhhhccccccCcce
Confidence 3788999999999 9998777765 35555567999999999988875432 378999999888876655 77999
Q ss_pred EEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEeccch
Q 039591 206 IFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSAKGA 244 (284)
Q Consensus 206 V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~~g~ 244 (284)
|+-+.....+ ++...+.+++.+.|||+|++-..+..|.
T Consensus 173 I~yDTy~e~y-Edl~~~hqh~~rLLkP~gv~SyfNg~~~ 210 (271)
T KOG1709|consen 173 IYYDTYSELY-EDLRHFHQHVVRLLKPEGVFSYFNGLGA 210 (271)
T ss_pred eEeechhhHH-HHHHHHHHHHhhhcCCCceEEEecCccc
Confidence 9999865444 7889999999999999999998875443
No 213
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.22 E-value=5.1e-06 Score=75.19 Aligned_cols=109 Identities=19% Similarity=0.184 Sum_probs=77.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCC----CeEEEEcchhhhh-c-----
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEK----RMKFLTGDILQVK-E----- 198 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~----~v~~~~~D~~~~~-~----- 198 (284)
++++.++++||| =|-..+.+-+ ..-..++|+||.+..++.|++..+.+-...+ .+.|+++|-.... .
T Consensus 116 ~~~~~~~~LgCG-KGGDLlKw~k--AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 116 KRGDDVLDLGCG-KGGDLLKWDK--AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred ccccccceeccC-CcccHhHhhh--hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 678899999999 6667776665 2445799999999999999987765432222 4789999965421 1
Q ss_pred cCCCccEEEE---cCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 199 KLGEYDCIFL---AALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 199 ~l~~fD~V~~---~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+..+||+|=+ .+..-.+.+....+++++.+.|+|||+++-..
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 1133999843 22222233555778999999999999999755
No 214
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.21 E-value=7.6e-06 Score=79.63 Aligned_cols=105 Identities=23% Similarity=0.281 Sum_probs=72.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEE-------------cchhh
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLT-------------GDILQ 195 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~-------------~D~~~ 195 (284)
.++++|+.+|+||.|+.++..|+ ..|++|+++|.++++.+.++++-... ..++... .|..+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak--~lGA~V~a~D~~~~rle~aeslGA~~----v~i~~~e~~~~~~gya~~~s~~~~~ 236 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAG--SLGAIVRAFDTRPEVAEQVESMGAEF----LELDFEEEGGSGDGYAKVMSEEFIK 236 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHcCCeE----EEeccccccccccchhhhcchhHHH
Confidence 67999999999999999999998 35679999999999999999862210 0011111 11111
Q ss_pred h-----hccCCCccEEEEcCcCCCCHHHHHHH-HHHHHhccccCcEEEEEec
Q 039591 196 V-----KEKLGEYDCIFLAALVGMSKEEKMKI-IRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 196 ~-----~~~l~~fD~V~~~~~~~~~~~~k~~~-l~~~~~~L~pGG~lv~~~~ 241 (284)
. ....+.+|+||.++..... .. +.+ .++..+.|||||+++..+.
T Consensus 237 ~~~~~~~~~~~gaDVVIetag~pg~-~a-P~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 237 AEMALFAEQAKEVDIIITTALIPGK-PA-PKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHhccCCCCEEEECCCCCcc-cC-cchHHHHHHHhcCCCCEEEEEcc
Confidence 0 1112579999999876211 01 234 5999999999999988764
No 215
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.19 E-value=7.9e-06 Score=71.70 Aligned_cols=89 Identities=17% Similarity=0.168 Sum_probs=58.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHH-HHHHHhhccCCCCCe-EEEEcchh-----hhhccCC
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNV-ARRIVATDFEFEKRM-KFLTGDIL-----QVKEKLG 201 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~-A~~~~~~~~~l~~~v-~~~~~D~~-----~~~~~l~ 201 (284)
..+++|||+||| .|..+..+++ .+..+|+++|+++.++.. .++. .++ .+...|+. +...++.
T Consensus 74 ~~~~~vlDiG~g-tG~~t~~l~~--~ga~~v~avD~~~~~l~~~l~~~--------~~v~~~~~~ni~~~~~~~~~~d~~ 142 (228)
T TIGR00478 74 VKNKIVLDVGSS-TGGFTDCALQ--KGAKEVYGVDVGYNQLAEKLRQD--------ERVKVLERTNIRYVTPADIFPDFA 142 (228)
T ss_pred CCCCEEEEcccC-CCHHHHHHHH--cCCCEEEEEeCCHHHHHHHHhcC--------CCeeEeecCCcccCCHhHcCCCce
Confidence 567899999999 6777888887 245689999999987765 2222 121 12222332 2222445
Q ss_pred CccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEE
Q 039591 202 EYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLV 238 (284)
Q Consensus 202 ~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~ 238 (284)
.+|++|++.. .++..+.+.|+| |.+++
T Consensus 143 ~~DvsfiS~~---------~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 143 TFDVSFISLI---------SILPELDLLLNP-NDLTL 169 (228)
T ss_pred eeeEEEeehH---------hHHHHHHHHhCc-CeEEE
Confidence 7888876642 367889999999 66654
No 216
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.18 E-value=8.3e-06 Score=68.57 Aligned_cols=143 Identities=18% Similarity=0.272 Sum_probs=95.9
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEc
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLA 209 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~ 209 (284)
..+.+.|+|+| +|..+...|+ ..-+|++++.||...+.|.+|+.- ++ ..+++++.+|+.+. +.+..|+|++.
T Consensus 32 a~d~~~DLGaG-sGiLs~~Aa~---~A~rViAiE~dPk~a~~a~eN~~v-~g-~~n~evv~gDA~~y--~fe~ADvvicE 103 (252)
T COG4076 32 AEDTFADLGAG-SGILSVVAAH---AAERVIAIEKDPKRARLAEENLHV-PG-DVNWEVVVGDARDY--DFENADVVICE 103 (252)
T ss_pred hhhceeeccCC-cchHHHHHHh---hhceEEEEecCcHHHHHhhhcCCC-CC-CcceEEEecccccc--cccccceeHHH
Confidence 34789999999 8988877776 467899999999999999999754 33 37899999999864 33678999864
Q ss_pred CcC-CCCHHHHHHHHHHHHhccccCcEEEEEe----ccc----hhhhcCCCCCC-CCCCC---cEEEEEEcCCCceeeEE
Q 039591 210 ALV-GMSKEEKMKIIRHIRKYMKDGGILLVRS----AKG----ARAFLYPVVER-HDLLD---FEVLSIFHPIDEVINSV 276 (284)
Q Consensus 210 ~~~-~~~~~~k~~~l~~~~~~L~pGG~lv~~~----~~g----~~~~lyp~v~~-~~l~g---f~~~~~~~p~~~v~nsv 276 (284)
.+- ....+....+++.+.+.||-.+.++=.. ++- .+...|.+=-+ ++... ++++..-.|.++|.|--
T Consensus 104 mlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~~~a~pv~~~~~~i~Yde~l~se~~~p~~iye~v~f~k~~PEvy~~~ 183 (252)
T COG4076 104 MLDTALIEEKQVPVINAVLEFLRYDPTIIPQEVRIGANPVRRPPRTIRYDEGLPSEDIEPEVIYEVVRFDKPIPEVYNKK 183 (252)
T ss_pred HhhHHhhcccccHHHHHHHHHhhcCCccccHHHhhccCccccCCcccccCCCCCccccCcceeEEEEeccCCCchhhcce
Confidence 321 1122455688899999999999987322 111 12222322111 12222 56655555677777754
Q ss_pred EEEe
Q 039591 277 ILVR 280 (284)
Q Consensus 277 i~~r 280 (284)
+=..
T Consensus 184 lele 187 (252)
T COG4076 184 LELE 187 (252)
T ss_pred eEEe
Confidence 4333
No 217
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.17 E-value=1.9e-05 Score=80.18 Aligned_cols=111 Identities=16% Similarity=0.123 Sum_probs=82.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhc---CC--------------------------------------CcEEEEEeCCHH
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNH---LK--------------------------------------ATHFDNFDIDEA 167 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~---~~--------------------------------------~~~V~~vDis~~ 167 (284)
.++..++|.+|| +|...|..|... .| ..+++|+|+|+.
T Consensus 189 ~~~~~l~DP~CG-SGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~ 267 (702)
T PRK11783 189 QEGTPLLDPMCG-SGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPR 267 (702)
T ss_pred CCCCeEEccCCC-ccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHH
Confidence 457899999999 888877765410 11 236999999999
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCccEEEEcCcCCCC---HHHHHHHHHHHHhccc---cCcEEEEE
Q 039591 168 ANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEYDCIFLAALVGMS---KEEKMKIIRHIRKYMK---DGGILLVR 239 (284)
Q Consensus 168 ~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~fD~V~~~~~~~~~---~~~k~~~l~~~~~~L~---pGG~lv~~ 239 (284)
+++.|++|+...| +.+.++|.++|+.+..... +.||+|+++.+.+.. ..+...+++.+.+.++ +|+.+.+-
T Consensus 268 av~~A~~N~~~~g-~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ll 346 (702)
T PRK11783 268 VIQAARKNARRAG-VAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALF 346 (702)
T ss_pred HHHHHHHHHHHcC-CCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 9999999998865 6778999999998764332 469999999887532 2334556666665555 89888776
Q ss_pred ec
Q 039591 240 SA 241 (284)
Q Consensus 240 ~~ 241 (284)
+.
T Consensus 347 t~ 348 (702)
T PRK11783 347 SS 348 (702)
T ss_pred eC
Confidence 64
No 218
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.17 E-value=4.8e-05 Score=68.29 Aligned_cols=108 Identities=14% Similarity=0.185 Sum_probs=84.0
Q ss_pred CCCCeEEEecCCCChHHHHH-HHhhcCCC--cEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh--ccC-CC
Q 039591 129 VQPKKVAFVGSGPMPLTSIV-MAKNHLKA--THFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK--EKL-GE 202 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~-la~~~~~~--~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~--~~l-~~ 202 (284)
..+-+|+||.|| .|--.+- +.. .+. .+|...|.||..++..+++++..| +.+.++|.++|+++.. ..+ ..
T Consensus 134 g~pvrIlDIAaG-~GRYvlDal~~--~~~~~~~i~LrDys~~Nv~~g~~li~~~g-L~~i~~f~~~dAfd~~~l~~l~p~ 209 (311)
T PF12147_consen 134 GRPVRILDIAAG-HGRYVLDALEK--HPERPDSILLRDYSPINVEKGRALIAERG-LEDIARFEQGDAFDRDSLAALDPA 209 (311)
T ss_pred CCceEEEEeccC-CcHHHHHHHHh--CCCCCceEEEEeCCHHHHHHHHHHHHHcC-CccceEEEecCCCCHhHhhccCCC
Confidence 467799999999 5554443 443 344 689999999999999999999866 7777799999998742 223 45
Q ss_pred ccEEEEcCcCCCCHHH--HHHHHHHHHhccccCcEEEEEe
Q 039591 203 YDCIFLAALVGMSKEE--KMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 203 fD~V~~~~~~~~~~~~--k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.|+++++.+....+++ -...+..+...+.|||+++..+
T Consensus 210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred CCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 7999999877544332 3567889999999999999987
No 219
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.13 E-value=7e-06 Score=76.66 Aligned_cols=161 Identities=16% Similarity=0.214 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHhccCCccccccccccccchhhhhhHHHHHHHHhhccCCCCeEEEecCCCChHHH
Q 039591 67 VQEMRESLIVLCGRAEGLLELEFATFLNKIPQPLNNLNLFPYYGNYVKLASFECRILKENGVVQPKKVAFVGSGPMPLTS 146 (284)
Q Consensus 67 ~~~~~~~l~~l~~~~e~~~E~~~a~~~~~~~~~~~~l~~fp~~~~y~~l~~~E~~~l~~~~~~~~~~VL~iGsGp~G~~a 146 (284)
...+.+.+.++++......+..|....+..+.+ . +-.+.+...+.|.-...+....++.+++++||| +|-..
T Consensus 54 ~~~~~e~~~~~y~~~~dl~~~~w~~~~h~~~~~-e------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~ 125 (364)
T KOG1269|consen 54 TEDLPEQIAKYYNNSTDLYERNWGQSFHFGRIP-E------GNSNEMFWIRHEGIVALRESCFPGSKVLDVGTG-VGGPS 125 (364)
T ss_pred ccccchHHHHHhcccchhhhhhhccchhccCcc-c------hhHHHHHHHhhcchHHHhhcCcccccccccCcC-cCchh
Confidence 345566677778877788888888877654321 1 111222222333222223344677799999999 99889
Q ss_pred HHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEc-CcCCCCHHHHHHHHHH
Q 039591 147 IVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLA-ALVGMSKEEKMKIIRH 225 (284)
Q Consensus 147 i~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~-~~~~~~~~~k~~~l~~ 225 (284)
..++. ..++.++++|.++..+.++.......+ +..+..++.+|....+.+...||.+... +..+ ..+...++++
T Consensus 126 ~~i~~--f~~~~~~Gl~~n~~e~~~~~~~~~~~~-l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~--~~~~~~~y~E 200 (364)
T KOG1269|consen 126 RYIAV--FKKAGVVGLDNNAYEAFRANELAKKAY-LDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCH--APDLEKVYAE 200 (364)
T ss_pred HHHHH--hccCCccCCCcCHHHHHHHHHHHHHHH-hhhhcceehhhhhcCCCCccccCcEEEEeeccc--CCcHHHHHHH
Confidence 88887 688999999999999999998876644 5667777889998876666889999653 3333 3567899999
Q ss_pred HHhccccCcEEEEEe
Q 039591 226 IRKYMKDGGILLVRS 240 (284)
Q Consensus 226 ~~~~L~pGG~lv~~~ 240 (284)
+.+.++|||+.+...
T Consensus 201 i~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 201 IYRVLKPGGLFIVKE 215 (364)
T ss_pred HhcccCCCceEEeHH
Confidence 999999999999754
No 220
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.12 E-value=0.00012 Score=67.35 Aligned_cols=154 Identities=14% Similarity=0.114 Sum_probs=97.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhc---CCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC-----
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNH---LKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL----- 200 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~---~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l----- 200 (284)
.++..++|+||| .|.-+..|.+.. ....+.+++|+|.++++.+.+.+.......-.+.-++||..+....+
T Consensus 75 ~~~~~lIELGsG-~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 75 PSGSMLVELGSG-NLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred CCCCEEEEECCC-chHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence 456689999999 665444333312 13567999999999999999987721211123444889887643211
Q ss_pred -CCccEEEEcC-cCC-CCHHHHHHHHHHHHh-ccccCcEEEEEe---------------ccch-hhhc-------CCCCC
Q 039591 201 -GEYDCIFLAA-LVG-MSKEEKMKIIRHIRK-YMKDGGILLVRS---------------AKGA-RAFL-------YPVVE 253 (284)
Q Consensus 201 -~~fD~V~~~~-~~~-~~~~~k~~~l~~~~~-~L~pGG~lv~~~---------------~~g~-~~~l-------yp~v~ 253 (284)
....+++.-+ ..| ..+++...+++++++ .|+||+.+++-- ..|. +.|+ ...++
T Consensus 154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvTa~FnlN~L~~~Nr~Lg 233 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVTRRFVLNGLVHANEILG 233 (319)
T ss_pred cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchhHHHHHHHHHHHHHHhC
Confidence 2356665543 343 456788899999999 999999998722 1222 1121 11111
Q ss_pred C--CCCCCcEEEEEEcCCCceeeEEEEEeecC
Q 039591 254 R--HDLLDFEVLSIFHPIDEVINSVILVRKPV 283 (284)
Q Consensus 254 ~--~~l~gf~~~~~~~p~~~v~nsvi~~rk~~ 283 (284)
. .++..|+-...++|....+..-+++++++
T Consensus 234 ~~~Fd~~~f~h~a~~n~~~~rie~~l~s~~~~ 265 (319)
T TIGR03439 234 SEAFREEDWEFLGEWDEELGRHEAFYIPKKDV 265 (319)
T ss_pred ccccCHHHcEEEEEEcCCCCeEEEEEEeCCcE
Confidence 1 13456888888988887777777776653
No 221
>PRK10742 putative methyltransferase; Provisional
Probab=98.08 E-value=3.3e-05 Score=68.20 Aligned_cols=84 Identities=11% Similarity=0.179 Sum_probs=69.0
Q ss_pred hccCCCC--eEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhc------cC-CCCCeEEEEcchhhh
Q 039591 126 NGVVQPK--KVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATD------FE-FEKRMKFLTGDILQV 196 (284)
Q Consensus 126 ~~~~~~~--~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~------~~-l~~~v~~~~~D~~~~ 196 (284)
.+.+++. +|||.=+| +|-.++.++. .|++|+.+|.++......+++++.. +. +..+|+++++|..++
T Consensus 82 vglk~g~~p~VLD~TAG-lG~Da~~las---~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~ 157 (250)
T PRK10742 82 VGIKGDYLPDVVDATAG-LGRDAFVLAS---VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA 157 (250)
T ss_pred hCCCCCCCCEEEECCCC-ccHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHH
Confidence 3446666 89999999 9999999998 5888999999999999999988763 21 225799999999987
Q ss_pred hccC-CCccEEEEcCcCC
Q 039591 197 KEKL-GEYDCIFLAALVG 213 (284)
Q Consensus 197 ~~~l-~~fD~V~~~~~~~ 213 (284)
.... ..||+||++....
T Consensus 158 L~~~~~~fDVVYlDPMfp 175 (250)
T PRK10742 158 LTDITPRPQVVYLDPMFP 175 (250)
T ss_pred HhhCCCCCcEEEECCCCC
Confidence 6544 5799999997653
No 222
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=98.07 E-value=2.3e-05 Score=72.27 Aligned_cols=104 Identities=21% Similarity=0.208 Sum_probs=76.2
Q ss_pred HHHhhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCC
Q 039591 122 ILKENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLG 201 (284)
Q Consensus 122 ~l~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~ 201 (284)
.|+.....++++|+.+|.|-+|..++.+|+ . -+++|+++|++++..+.|+++-+. .-+.....|..+... +
T Consensus 158 alk~~~~~pG~~V~I~G~GGlGh~avQ~Ak-a-~ga~Via~~~~~~K~e~a~~lGAd-----~~i~~~~~~~~~~~~--~ 228 (339)
T COG1064 158 ALKKANVKPGKWVAVVGAGGLGHMAVQYAK-A-MGAEVIAITRSEEKLELAKKLGAD-----HVINSSDSDALEAVK--E 228 (339)
T ss_pred ehhhcCCCCCCEEEEECCcHHHHHHHHHHH-H-cCCeEEEEeCChHHHHHHHHhCCc-----EEEEcCCchhhHHhH--h
Confidence 444445588999999999988889999998 3 459999999999999999998332 112222123322221 3
Q ss_pred CccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEecc
Q 039591 202 EYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSAK 242 (284)
Q Consensus 202 ~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~~ 242 (284)
.||+|+.... ...++...+.||+||++++.+..
T Consensus 229 ~~d~ii~tv~--------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 229 IADAIIDTVG--------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hCcEEEECCC--------hhhHHHHHHHHhcCCEEEEECCC
Confidence 4999998765 24577788899999999998744
No 223
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.03 E-value=8e-05 Score=64.55 Aligned_cols=106 Identities=12% Similarity=0.120 Sum_probs=76.2
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc--c-CCCc
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE--K-LGEY 203 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~--~-l~~f 203 (284)
..+++.+||.+|+. .|.|.-.++....+.+.|.++|.++....---.++++ ..+|--+-+|+..... . .+.+
T Consensus 70 ~ik~gskVLYLGAa-sGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~----R~NIiPIl~DAr~P~~Y~~lv~~V 144 (229)
T PF01269_consen 70 PIKPGSKVLYLGAA-SGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK----RPNIIPILEDARHPEKYRMLVEMV 144 (229)
T ss_dssp S--TT-EEEEETTT-TSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH----STTEEEEES-TTSGGGGTTTS--E
T ss_pred CCCCCCEEEEeccc-CCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc----CCceeeeeccCCChHHhhcccccc
Confidence 34789999999999 9999888888556789999999999776655555544 2678888999985221 1 2789
Q ss_pred cEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 204 DCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 204 D~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+||.+..- +.+-.-+..++...||+||.+++.-
T Consensus 145 DvI~~DVaQ---p~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 145 DVIFQDVAQ---PDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEEEE-SS---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEecCCC---hHHHHHHHHHHHhhccCCcEEEEEE
Confidence 999998653 2455667778888999999988754
No 224
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.02 E-value=1.5e-05 Score=70.89 Aligned_cols=150 Identities=17% Similarity=0.287 Sum_probs=85.5
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccC--------------------------C
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFE--------------------------F 182 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~--------------------------l 182 (284)
..+.++|||||||+-+..+.+++ .--+|+..|..+.-.+..++-++..+. +
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~---~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l 131 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACE---WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL 131 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGG---TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHH---hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence 56789999999998887766665 335799999999999877766554321 0
Q ss_pred CCCe-EEEEcchhhhh--cc---C-CCccEEEEcCcC---CCCHHHHHHHHHHHHhccccCcEEEEEeccchh-----hh
Q 039591 183 EKRM-KFLTGDILQVK--EK---L-GEYDCIFLAALV---GMSKEEKMKIIRHIRKYMKDGGILLVRSAKGAR-----AF 247 (284)
Q Consensus 183 ~~~v-~~~~~D~~~~~--~~---l-~~fD~V~~~~~~---~~~~~~k~~~l~~~~~~L~pGG~lv~~~~~g~~-----~~ 247 (284)
...| .++..|+.+.. .. + .+||+|++.... ..+.+.=...++++.++|||||.|++.+.-+.. .-
T Consensus 132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~ 211 (256)
T PF01234_consen 132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGH 211 (256)
T ss_dssp HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTE
T ss_pred HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCE
Confidence 0112 36667776521 11 2 249999875432 122345578999999999999999987742211 11
Q ss_pred cCCCCCCC--C----C--CCcEEEEEEcCC-CceeeE--EEEEee
Q 039591 248 LYPVVERH--D----L--LDFEVLSIFHPI-DEVINS--VILVRK 281 (284)
Q Consensus 248 lyp~v~~~--~----l--~gf~~~~~~~p~-~~v~ns--vi~~rk 281 (284)
-||.+..+ . + .||++....++. -.-+++ .++|||
T Consensus 212 ~F~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 212 KFPCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp EEE---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred ecccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence 24443333 1 2 799998776622 222333 555665
No 225
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.02 E-value=6.2e-05 Score=66.83 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=67.3
Q ss_pred HhhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCc
Q 039591 124 KENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEY 203 (284)
Q Consensus 124 ~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~f 203 (284)
.+...++++.|||||-| +|..+..|.. .|.+|+++|+||.+++.-.+.++... .+...+++.||+.. .++..|
T Consensus 52 ~ka~~k~tD~VLEvGPG-TGnLT~~lLe---~~kkVvA~E~Dprmvael~krv~gtp-~~~kLqV~~gD~lK--~d~P~f 124 (315)
T KOG0820|consen 52 EKADLKPTDVVLEVGPG-TGNLTVKLLE---AGKKVVAVEIDPRMVAELEKRVQGTP-KSGKLQVLHGDFLK--TDLPRF 124 (315)
T ss_pred hccCCCCCCEEEEeCCC-CCHHHHHHHH---hcCeEEEEecCcHHHHHHHHHhcCCC-ccceeeEEeccccc--CCCccc
Confidence 34445899999999999 7777777766 68999999999999999999887544 45789999999975 355789
Q ss_pred cEEEEcCcCC
Q 039591 204 DCIFLAALVG 213 (284)
Q Consensus 204 D~V~~~~~~~ 213 (284)
|.++.+.+..
T Consensus 125 d~cVsNlPyq 134 (315)
T KOG0820|consen 125 DGCVSNLPYQ 134 (315)
T ss_pred ceeeccCCcc
Confidence 9999876653
No 226
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.01 E-value=6.6e-05 Score=70.02 Aligned_cols=110 Identities=15% Similarity=0.085 Sum_probs=81.1
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcC----CC----------------------------c-------EEEEEeCCHHHH
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHL----KA----------------------------T-------HFDNFDIDEAAN 169 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~----~~----------------------------~-------~V~~vDis~~~~ 169 (284)
.++..++|-=|| +|..+|..|. .. || + .++|+|+|+.++
T Consensus 190 ~~~~pl~DPmCG-SGTi~IEAAl-~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i 267 (381)
T COG0116 190 KPDEPLLDPMCG-SGTILIEAAL-IAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHI 267 (381)
T ss_pred CCCCccccCCCC-ccHHHHHHHH-hccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHH
Confidence 566789988777 7777776665 22 11 1 377999999999
Q ss_pred HHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcCcCCCCHHHH-------HHHHHHHHhccccCcEEEEEec
Q 039591 170 NVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAALVGMSKEEK-------MKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 170 ~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~~~~~~~~~k-------~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
+.|+.|+++.| +.+.|+|.++|+..+....+.+|+|+++.+.|.--.++ ..+.+.+.+.++-.++.++.+.
T Consensus 268 ~~Ak~NA~~AG-v~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 268 EGAKANARAAG-VGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHHhcC-CCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 99999998855 78999999999998766657899999999876422221 2344455567777788887763
No 227
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.98 E-value=0.0002 Score=62.78 Aligned_cols=106 Identities=21% Similarity=0.289 Sum_probs=68.0
Q ss_pred HHhhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc-cC-
Q 039591 123 LKENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE-KL- 200 (284)
Q Consensus 123 l~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~-~l- 200 (284)
+.+.+.-.+++||++|=+ -++++.+|. ..+..+|+.+|+|+..++.-++.+++.| + .++.+..|+.+..+ ++
T Consensus 37 ~~~~gdL~gk~il~lGDD--DLtSlA~al-~~~~~~I~VvDiDeRll~fI~~~a~~~g-l--~i~~~~~DlR~~LP~~~~ 110 (243)
T PF01861_consen 37 MAERGDLEGKRILFLGDD--DLTSLALAL-TGLPKRITVVDIDERLLDFINRVAEEEG-L--PIEAVHYDLRDPLPEELR 110 (243)
T ss_dssp HHHTT-STT-EEEEES-T--T-HHHHHHH-HT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS---TTTS
T ss_pred HHhcCcccCCEEEEEcCC--cHHHHHHHh-hCCCCeEEEEEcCHHHHHHHHHHHHHcC-C--ceEEEEecccccCCHHHh
Confidence 344455678999999977 788888886 4567899999999999999999998866 3 49999999987543 33
Q ss_pred CCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEE
Q 039591 201 GEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGIL 236 (284)
Q Consensus 201 ~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~l 236 (284)
++||++|.+.+.. .+--.-++......||.-|-.
T Consensus 111 ~~fD~f~TDPPyT--~~G~~LFlsRgi~~Lk~~g~~ 144 (243)
T PF01861_consen 111 GKFDVFFTDPPYT--PEGLKLFLSRGIEALKGEGCA 144 (243)
T ss_dssp S-BSEEEE---SS--HHHHHHHHHHHHHTB-STT-E
T ss_pred cCCCEEEeCCCCC--HHHHHHHHHHHHHHhCCCCce
Confidence 8999999998763 455567888888888877733
No 228
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=97.97 E-value=6.3e-05 Score=67.64 Aligned_cols=98 Identities=14% Similarity=0.101 Sum_probs=69.7
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcE-EEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc---cCCC
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATH-FDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE---KLGE 202 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~-V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~---~l~~ 202 (284)
...++++||..|+||+|+.++.+|+ . .|.+ |+++|.+++..+.|+++ | ...-+.. .+..+... .-..
T Consensus 117 ~~~~g~~VlV~G~G~vG~~~~~~ak-~-~G~~~Vi~~~~~~~r~~~a~~~----G-a~~~i~~--~~~~~~~~~~~~~~g 187 (280)
T TIGR03366 117 GDLKGRRVLVVGAGMLGLTAAAAAA-A-AGAARVVAADPSPDRRELALSF----G-ATALAEP--EVLAERQGGLQNGRG 187 (280)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHH-H-cCCCEEEEECCCHHHHHHHHHc----C-CcEecCc--hhhHHHHHHHhCCCC
Confidence 3367889999999999999999998 3 4665 99999999999988875 3 1111111 11111111 1146
Q ss_pred ccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 203 YDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 203 fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+|+|+.+... ...++.+.+.+++||+++..+
T Consensus 188 ~d~vid~~G~-------~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 188 VDVALEFSGA-------TAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCEEEECCCC-------hHHHHHHHHHhcCCCEEEEec
Confidence 9999987654 456788889999999999876
No 229
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.95 E-value=3e-05 Score=72.47 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=85.1
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc-cC-CCccE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE-KL-GEYDC 205 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~-~l-~~fD~ 205 (284)
++++.||||..+-|.|-|+...+- ..-.+.|++.|.+..++..-+.++.++| . .+-.....|..+++. .. ++||-
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAal-Mkn~G~I~AnD~n~~r~~~l~~n~~rlG-v-~ntiv~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAAL-MKNTGVIFANDSNENRLKSLKANLHRLG-V-TNTIVSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHH-HcCCceEEecccchHHHHHHHHHHHHhC-C-CceEEEccCcccccccccCcccce
Confidence 488999999999999999866554 3345689999999999999999999988 3 455556777766542 22 47999
Q ss_pred EEEcCcC-C--CC------------------HHHHHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALV-G--MS------------------KEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~-~--~~------------------~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+++++. | .. ..-..+++..+.+.+++||+||+.+
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 9998764 2 11 1123788899999999999999876
No 230
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.94 E-value=3.3e-05 Score=70.10 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=52.5
Q ss_pred CCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhh-hhccC----CCccE
Q 039591 131 PKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQ-VKEKL----GEYDC 205 (284)
Q Consensus 131 ~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~-~~~~l----~~fD~ 205 (284)
.-++||||+|...+-.+.-++ . .+.+++|.|+|+..++.|++++++-..+.++|+++...-.. ....+ +.||+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~-~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAK-L-YGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHH-H-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhh-h-cCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 458899999988777777776 3 58999999999999999999998853688999998664222 11111 67999
Q ss_pred EEEcCcCCCC
Q 039591 206 IFLAALVGMS 215 (284)
Q Consensus 206 V~~~~~~~~~ 215 (284)
.+++.+....
T Consensus 181 tmCNPPFy~s 190 (299)
T PF05971_consen 181 TMCNPPFYSS 190 (299)
T ss_dssp EEE-----SS
T ss_pred EecCCccccC
Confidence 9999876433
No 231
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=0.00024 Score=60.98 Aligned_cols=127 Identities=23% Similarity=0.218 Sum_probs=86.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh------ccC--
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK------EKL-- 200 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~------~~l-- 200 (284)
.++.+|+|+|+-|.|. +..+++...++..|+++|+.|-.. -.+|.++++|+++-. ..+
T Consensus 44 ~~~~~ViDLGAAPGgW-sQva~~~~~~~~~ivavDi~p~~~-------------~~~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 44 KPGMVVVDLGAAPGGW-SQVAAKKLGAGGKIVAVDILPMKP-------------IPGVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred cCCCEEEEcCCCCCcH-HHHHHHHhCCCCcEEEEECccccc-------------CCCceEEeeeccCccHHHHHHHHcCC
Confidence 7889999999999775 445555355666799999976321 245999999987632 122
Q ss_pred CCccEEEEcCcC---CCCH-------HHHHHHHHHHHhccccCcEEEEEeccchh--hhcCCCCCCCCC-CCcEEEEEEc
Q 039591 201 GEYDCIFLAALV---GMSK-------EEKMKIIRHIRKYMKDGGILLVRSAKGAR--AFLYPVVERHDL-LDFEVLSIFH 267 (284)
Q Consensus 201 ~~fD~V~~~~~~---~~~~-------~~k~~~l~~~~~~L~pGG~lv~~~~~g~~--~~lyp~v~~~~l-~gf~~~~~~~ 267 (284)
..+|+|+++..- |... .-....++-+..+|+|||.+++....|-. .++ ..+ ..|+.+..+.
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l------~~~~~~F~~v~~~K 183 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLL------KALRRLFRKVKIFK 183 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHH------HHHHHhhceeEEec
Confidence 347999987532 2221 12355667777899999999987754431 111 112 5799999999
Q ss_pred CCCceeeE
Q 039591 268 PIDEVINS 275 (284)
Q Consensus 268 p~~~v~ns 275 (284)
|...+-||
T Consensus 184 P~aSR~~S 191 (205)
T COG0293 184 PKASRKRS 191 (205)
T ss_pred CccccCCC
Confidence 98888777
No 232
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.92 E-value=0.00016 Score=65.19 Aligned_cols=106 Identities=13% Similarity=0.230 Sum_probs=68.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLK-ATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~-~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
-.|.+|||+|||| |. +++.+...++ -.+++++|.|+.+++.++.+++..... ..... ..+......+....|+|+
T Consensus 32 f~P~~vLD~GsGp-Gt-a~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~DLvi 107 (274)
T PF09243_consen 32 FRPRSVLDFGSGP-GT-ALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNN-RNAEW-RRVLYRDFLPFPPDDLVI 107 (274)
T ss_pred CCCceEEEecCCh-HH-HHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccccc-ccchh-hhhhhcccccCCCCcEEE
Confidence 5788999999994 64 4454443444 346999999999999999998764311 11111 122211112334569999
Q ss_pred EcCcC-CCCHHHHHHHHHHHHhccccCcEEEEE
Q 039591 208 LAALV-GMSKEEKMKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 208 ~~~~~-~~~~~~k~~~l~~~~~~L~pGG~lv~~ 239 (284)
++... ....+.+.++++.+++.+++ -+|++.
T Consensus 108 ~s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVE 139 (274)
T PF09243_consen 108 ASYVLNELPSAARAELVRSLWNKTAP-VLVLVE 139 (274)
T ss_pred EehhhhcCCchHHHHHHHHHHHhccC-cEEEEc
Confidence 87644 33447788999999988877 344443
No 233
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=97.92 E-value=8.3e-05 Score=68.86 Aligned_cols=95 Identities=16% Similarity=0.172 Sum_probs=68.5
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
+++++||.+|+||+|+.++.++++...+.+|+++|.+++.++.|++. + .. ....+. ... ..+|+||.
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~----~---~~--~~~~~~---~~~-~g~d~viD 228 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFA----D---ET--YLIDDI---PED-LAVDHAFE 228 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhc----C---ce--eehhhh---hhc-cCCcEEEE
Confidence 67899999999999999988887324567899999999999988751 2 11 111111 111 25999998
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+...... ...+....+.|++||++++.+
T Consensus 229 ~~G~~~~----~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 229 CVGGRGS----QSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred CCCCCcc----HHHHHHHHHhCcCCcEEEEEe
Confidence 7652111 457888899999999998765
No 234
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=97.91 E-value=5.5e-05 Score=70.26 Aligned_cols=96 Identities=14% Similarity=0.261 Sum_probs=69.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeC---CHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDI---DEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDC 205 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDi---s~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~ 205 (284)
.++++|+.+|+|++|..++.+|+ ..|++|++++. +++..+.++++ | . +.+.....|..+ ....+.+|+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak--~~G~~vi~~~~~~~~~~~~~~~~~~----G-a-~~v~~~~~~~~~-~~~~~~~d~ 241 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLR--LRGFEVYVLNRRDPPDPKADIVEEL----G-A-TYVNSSKTPVAE-VKLVGEFDL 241 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--HcCCeEEEEecCCCCHHHHHHHHHc----C-C-EEecCCccchhh-hhhcCCCCE
Confidence 57889999999999999999998 35678999987 78888887764 3 1 112221222221 111257999
Q ss_pred EEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
||..... ...+....+.|++||++++.+
T Consensus 242 vid~~g~-------~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 242 IIEATGV-------PPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred EEECcCC-------HHHHHHHHHHccCCcEEEEEe
Confidence 9988764 347788889999999998766
No 235
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.90 E-value=5.6e-05 Score=69.13 Aligned_cols=112 Identities=17% Similarity=0.151 Sum_probs=71.7
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhc------CCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc--
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNH------LKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK-- 199 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~------~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~-- 199 (284)
..++.+|+|..|| +|-..+.+.+.. ....+++|+|+++.++..|+-++.-.+.-.....+..+|.......
T Consensus 44 ~~~~~~VlDPacG-sG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 44 PKKGDSVLDPACG-SGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp T-TTEEEEETT-T-TSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred ccccceeechhhh-HHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence 3667789999999 676655554411 2678999999999999999976543231123356888998654332
Q ss_pred CCCccEEEEcCcCCCC--H------------------HHHHHHHHHHHhccccCcEEEEEe
Q 039591 200 LGEYDCIFLAALVGMS--K------------------EEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 200 l~~fD~V~~~~~~~~~--~------------------~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
...||+|+.+.+.+.. . ..-..++.++.+.|++||++++.-
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 3689999998776432 0 011358899999999999976654
No 236
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=97.90 E-value=6.3e-05 Score=70.37 Aligned_cols=99 Identities=19% Similarity=0.221 Sum_probs=71.3
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCcc
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEYD 204 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~fD 204 (284)
..++++||..|+|++|..++.+|+ ..|+ +|+++|.+++..+.++++ | ...-+.....|..+....+ +.+|
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak--~~G~~~Vi~~~~~~~r~~~a~~~----G-a~~~i~~~~~~~~~~i~~~~~~g~d 261 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAV--AAGASQVVAVDLNEDKLALAREL----G-ATATVNAGDPNAVEQVRELTGGGVD 261 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH--HcCCCcEEEEcCCHHHHHHHHHc----C-CceEeCCCchhHHHHHHHHhCCCCC
Confidence 367899999999999999999998 3566 699999999999998765 3 1122222223332222111 3699
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+||.+... ...+....+.+++||+++..+
T Consensus 262 ~vid~~G~-------~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 262 YAFEMAGS-------VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred EEEECCCC-------hHHHHHHHHHHhcCCEEEEEc
Confidence 99987654 356777888999999998765
No 237
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.89 E-value=0.00016 Score=64.89 Aligned_cols=112 Identities=21% Similarity=0.291 Sum_probs=80.4
Q ss_pred CCCeEEEecCCCChHHHHH----HHhhcCC-----CcEEEEEeCCHHHHHHHHHHHhh-------c------------c-
Q 039591 130 QPKKVAFVGSGPMPLTSIV----MAKNHLK-----ATHFDNFDIDEAANNVARRIVAT-------D------------F- 180 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~----la~~~~~-----~~~V~~vDis~~~~~~A~~~~~~-------~------------~- 180 (284)
.+-+|.-.||+ +|=.... +.. .++ ..+|+|.|+|..+++.|++-.=. . +
T Consensus 96 ~~irIWSaaCS-tGEEpYSiAm~l~e-~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~ 173 (268)
T COG1352 96 RPIRIWSAACS-TGEEPYSLAMLLLE-ALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGD 173 (268)
T ss_pred CceEEEecCcC-CCccHHHHHHHHHH-HhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCC
Confidence 46799999999 8854333 333 333 57899999999999999863211 0 0
Q ss_pred C-------CCCCeEEEEcchhhhhccCCCccEEEEcC-cCCCCHHHHHHHHHHHHhccccCcEEEEEeccc
Q 039591 181 E-------FEKRMKFLTGDILQVKEKLGEYDCIFLAA-LVGMSKEEKMKIIRHIRKYMKDGGILLVRSAKG 243 (284)
Q Consensus 181 ~-------l~~~v~~~~~D~~~~~~~l~~fD~V~~~~-~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~~g 243 (284)
+ +...|.|...|+.+-....+.||+||+-. +..++.+.+.++++..+..|+|||+|++-....
T Consensus 174 ~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~ 244 (268)
T COG1352 174 GSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSET 244 (268)
T ss_pred CcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCcc
Confidence 0 12347777777765332337899999965 446778899999999999999999999865433
No 238
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.88 E-value=0.0003 Score=60.77 Aligned_cols=114 Identities=23% Similarity=0.226 Sum_probs=88.1
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
+.+.+++||||- -++.++.|.+ ..+...+++.|+++..++.|.+++.+.+ +.++++...+|.......-+++|+|++
T Consensus 15 ~~~~~iaDIGsD-HAYLp~~Lv~-~~~~~~~va~eV~~gpl~~a~~~v~~~~-l~~~i~vr~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 15 KQGARIADIGSD-HAYLPIYLVK-NNPASTAVAGEVVPGPLESAIRNVKKNN-LSERIDVRLGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred HcCCceeeccCc-hhHhHHHHHh-cCCcceEEEeecccCHHHHHHHHHHhcC-CcceEEEeccCCccccCccCCcCEEEE
Confidence 455669999999 9999999998 4577789999999999999999999855 789999999999764433358999999
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEe---ccchhhhc
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRS---AKGARAFL 248 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~---~~g~~~~l 248 (284)
++.-| .--.+++++-.+.++.--++++.- ...+|+++
T Consensus 92 AGMGG---~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L 131 (226)
T COG2384 92 AGMGG---TLIREILEEGKEKLKGVERLILQPNIHTYELREWL 131 (226)
T ss_pred eCCcH---HHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHH
Confidence 97654 334678888888877555666543 33455543
No 239
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.87 E-value=7.1e-05 Score=66.27 Aligned_cols=94 Identities=15% Similarity=0.175 Sum_probs=67.1
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEc
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLA 209 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~ 209 (284)
...++||||+| -|-.+..++. +. .+|++.|.|+.|..+-++. | .+++..| +....-.+||+|-+-
T Consensus 94 ~~~~lLDlGAG-dG~VT~~l~~-~f--~~v~aTE~S~~Mr~rL~~k----g-----~~vl~~~--~w~~~~~~fDvIscL 158 (265)
T PF05219_consen 94 KDKSLLDLGAG-DGEVTERLAP-LF--KEVYATEASPPMRWRLSKK----G-----FTVLDID--DWQQTDFKFDVISCL 158 (265)
T ss_pred cCCceEEecCC-CcHHHHHHHh-hc--ceEEeecCCHHHHHHHHhC----C-----CeEEehh--hhhccCCceEEEeeh
Confidence 56789999999 7888888887 33 4699999999997654442 3 3333322 222222589999877
Q ss_pred CcCCCCHHHHHHHHHHHHhccccCcEEEEE
Q 039591 210 ALVGMSKEEKMKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 210 ~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~ 239 (284)
...... ..+..+++++.+.|+|+|++++-
T Consensus 159 NvLDRc-~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 159 NVLDRC-DRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred hhhhcc-CCHHHHHHHHHHHhCCCCEEEEE
Confidence 655322 45578999999999999999863
No 240
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=9.6e-05 Score=70.82 Aligned_cols=108 Identities=17% Similarity=0.231 Sum_probs=80.0
Q ss_pred HHHHhhc-cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc
Q 039591 121 RILKENG-VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK 199 (284)
Q Consensus 121 ~~l~~~~-~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~ 199 (284)
..+..+. ...++.++|+.|| +|..++.+|+ +-.+|++||++|++++-|+++++.-| . .+.+|++|-+++....
T Consensus 373 s~i~e~~~l~~~k~llDv~CG-TG~iglala~---~~~~ViGvEi~~~aV~dA~~nA~~Ng-i-sNa~Fi~gqaE~~~~s 446 (534)
T KOG2187|consen 373 STIGEWAGLPADKTLLDVCCG-TGTIGLALAR---GVKRVIGVEISPDAVEDAEKNAQING-I-SNATFIVGQAEDLFPS 446 (534)
T ss_pred HHHHHHhCCCCCcEEEEEeec-CCceehhhhc---cccceeeeecChhhcchhhhcchhcC-c-cceeeeecchhhccch
Confidence 3444333 3666788999999 9999999998 66899999999999999999987744 4 6899999977665443
Q ss_pred C-----CCcc-EEEEcCcC-CCCHHHHHHHHHHHHhccccCcEEEE
Q 039591 200 L-----GEYD-CIFLAALV-GMSKEEKMKIIRHIRKYMKDGGILLV 238 (284)
Q Consensus 200 l-----~~fD-~V~~~~~~-~~~~~~k~~~l~~~~~~L~pGG~lv~ 238 (284)
+ +.=+ +++++..- |+. ..+++.+.++-++--.+.+
T Consensus 447 l~~~~~~~~~~v~iiDPpR~Glh----~~~ik~l~~~~~~~rlvyv 488 (534)
T KOG2187|consen 447 LLTPCCDSETLVAIIDPPRKGLH----MKVIKALRAYKNPRRLVYV 488 (534)
T ss_pred hcccCCCCCceEEEECCCccccc----HHHHHHHHhccCccceEEE
Confidence 3 2335 66777654 655 6788887766666655544
No 241
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.83 E-value=3.4e-05 Score=64.99 Aligned_cols=121 Identities=18% Similarity=0.260 Sum_probs=70.2
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhh-----hccC----
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQV-----KEKL---- 200 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~-----~~~l---- 200 (284)
.+.+|||+||+|.|.+...+.+ ..+..+|+++|+.+. . . ...+.++++|+.+. ....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~-~~~~~~v~avDl~~~---------~--~--~~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQR-GGPAGRVVAVDLGPM---------D--P--LQNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTS-TTTEEEEEEEESSST---------G--S---TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred cccEEEEcCCcccceeeeeeec-ccccceEEEEecccc---------c--c--ccceeeeecccchhhHHHhhhhhcccc
Confidence 4589999999998887766654 224689999999877 1 1 13456666665532 1111
Q ss_pred -CCccEEEEcCcC---CCC-------HHHHHHHHHHHHhccccCcEEEEEeccchh--hhcCCCCCCCCC-CCcEEEEEE
Q 039591 201 -GEYDCIFLAALV---GMS-------KEEKMKIIRHIRKYMKDGGILLVRSAKGAR--AFLYPVVERHDL-LDFEVLSIF 266 (284)
Q Consensus 201 -~~fD~V~~~~~~---~~~-------~~~k~~~l~~~~~~L~pGG~lv~~~~~g~~--~~lyp~v~~~~l-~gf~~~~~~ 266 (284)
+.||+|++|... +.. ..-....+.-+.+.|+|||.+++...++.. .++ ..+ ..|+.+..+
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~------~~l~~~F~~v~~~ 162 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELI------YLLKRCFSKVKIV 162 (181)
T ss_dssp TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHH------HHHHHHHHHEEEE
T ss_pred ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHH------HHHHhCCeEEEEE
Confidence 489999999732 110 011244455566789999998886633211 111 011 357777777
Q ss_pred cCCC
Q 039591 267 HPID 270 (284)
Q Consensus 267 ~p~~ 270 (284)
.|.-
T Consensus 163 Kp~~ 166 (181)
T PF01728_consen 163 KPPS 166 (181)
T ss_dssp E-TT
T ss_pred ECcC
Confidence 7644
No 242
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.83 E-value=8.3e-05 Score=70.71 Aligned_cols=89 Identities=16% Similarity=0.089 Sum_probs=67.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.++++|+.+|+||+|......++ ..|++|+.+|.++.+.+.|++. | . +.. +..+ ....+|+|+.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak--~~Ga~ViV~d~d~~R~~~A~~~----G-~----~~~--~~~e---~v~~aDVVI~ 263 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLR--GQGARVIVTEVDPICALQAAME----G-Y----EVM--TMEE---AVKEGDIFVT 263 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEECChhhHHHHHhc----C-C----EEc--cHHH---HHcCCCEEEE
Confidence 57899999999999999988887 4577999999999998888764 3 1 111 1222 2256899998
Q ss_pred cCcCCCCHHHHHHHHHHH-HhccccCcEEEEEe
Q 039591 209 AALVGMSKEEKMKIIRHI-RKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~-~~~L~pGG~lv~~~ 240 (284)
+... ..++... .+.||+||+++..+
T Consensus 264 atG~-------~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 264 TTGN-------KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CCCC-------HHHHHHHHHhcCCCCcEEEEeC
Confidence 8654 4556654 88999999998765
No 243
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.82 E-value=8.5e-05 Score=66.27 Aligned_cols=108 Identities=19% Similarity=0.317 Sum_probs=66.0
Q ss_pred CCCeEEEecCCCChHH--HHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc-----cC-C
Q 039591 130 QPKKVAFVGSGPMPLT--SIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE-----KL-G 201 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~--ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~-----~l-~ 201 (284)
.=+..|||||| +|.. .-..|+...|+++|+-+|+||..+..+|.++.... ..+..++++|+.+... .. +
T Consensus 68 GIrQFLDlGsG-lPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~--~g~t~~v~aD~r~p~~iL~~p~~~~ 144 (267)
T PF04672_consen 68 GIRQFLDLGSG-LPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP--RGRTAYVQADLRDPEAILAHPEVRG 144 (267)
T ss_dssp ---EEEEET---S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T--TSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred CcceEEEcccC-CCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC--CccEEEEeCCCCCHHHHhcCHHHHh
Confidence 44689999999 8842 44566656799999999999999999999987522 1248999999987321 01 2
Q ss_pred Ccc-----EEEEcCcCC-C-CHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 202 EYD-----CIFLAALVG-M-SKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 202 ~fD-----~V~~~~~~~-~-~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
-+| .|++.+..+ . +.++...++..+.+.|.||+.|++..
T Consensus 145 ~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 145 LLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp C--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred cCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 223 344443332 2 22567899999999999999999977
No 244
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=97.82 E-value=9.7e-05 Score=68.72 Aligned_cols=99 Identities=16% Similarity=0.076 Sum_probs=71.2
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC---CCcc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL---GEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l---~~fD 204 (284)
.++++||..|+|++|..++.+|+ . .|. +|+++|.+++..+.++++ | ...-+.....|..+....+ ..+|
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak-~-~G~~~Vi~~~~~~~~~~~~~~~----G-a~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAA-L-AGASKIIAVDIDDRKLEWAREF----G-ATHTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-H-cCCCeEEEEcCCHHHHHHHHHc----C-CceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 67899999999999999999998 3 466 599999999999998764 3 1122233233333222121 3699
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
+|+.+... ...++...+.+++||++++.+.
T Consensus 248 ~vid~~g~-------~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 248 VVIDAVGR-------PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred EEEECCCC-------HHHHHHHHHHhccCCEEEEECC
Confidence 99987653 3567778889999999998663
No 245
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.80 E-value=9.4e-05 Score=72.69 Aligned_cols=81 Identities=15% Similarity=0.090 Sum_probs=57.1
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcC-----C--CcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh-----
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHL-----K--ATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK----- 197 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~-----~--~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~----- 197 (284)
.+.+|+|.||| .|...+.++.... . ...++++|+|+.++..|+.++...+. ..+.+.++|.....
T Consensus 31 ~~~~ilDP~cG-sG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~--~~~~i~~~d~l~~~~~~~~ 107 (524)
T TIGR02987 31 TKTKIIDPCCG-DGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL--LEINVINFNSLSYVLLNIE 107 (524)
T ss_pred cceEEEeCCCC-ccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC--CCceeeecccccccccccc
Confidence 45699999999 7877777665221 1 25689999999999999998876541 23566666644311
Q ss_pred ccCCCccEEEEcCcCC
Q 039591 198 EKLGEYDCIFLAALVG 213 (284)
Q Consensus 198 ~~l~~fD~V~~~~~~~ 213 (284)
...+.||+|+.+.+.+
T Consensus 108 ~~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 108 SYLDLFDIVITNPPYG 123 (524)
T ss_pred cccCcccEEEeCCCcc
Confidence 1126899999998764
No 246
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.80 E-value=8e-05 Score=63.14 Aligned_cols=101 Identities=21% Similarity=0.263 Sum_probs=73.2
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
..+++|||+|+| .|+-++.-++ .....|++.|++|......+-|++..| ..+.|...|..- .-..||+++.
T Consensus 78 VrgkrVLd~gag-sgLvaIAaa~--aGA~~v~a~d~~P~~~~ai~lNa~ang---v~i~~~~~d~~g---~~~~~Dl~La 148 (218)
T COG3897 78 VRGKRVLDLGAG-SGLVAIAAAR--AGAAEVVAADIDPWLEQAIRLNAAANG---VSILFTHADLIG---SPPAFDLLLA 148 (218)
T ss_pred cccceeeecccc-cChHHHHHHH--hhhHHHHhcCCChHHHHHhhcchhhcc---ceeEEeeccccC---CCcceeEEEe
Confidence 568899999999 8999999887 355679999999999999999987743 678999888764 3368999987
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.-.+.. .....+++. +...++..|.-++.+
T Consensus 149 gDlfy~-~~~a~~l~~-~~~~l~~~g~~vlvg 178 (218)
T COG3897 149 GDLFYN-HTEADRLIP-WKDRLAEAGAAVLVG 178 (218)
T ss_pred eceecC-chHHHHHHH-HHHHHHhCCCEEEEe
Confidence 654421 233355666 445555555444433
No 247
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=97.79 E-value=0.00013 Score=67.15 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=71.2
Q ss_pred hccCCCCeEEEecCCCChHHHHHHHhhcCCCcE-EEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc--cCCC
Q 039591 126 NGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATH-FDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE--KLGE 202 (284)
Q Consensus 126 ~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~-V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~--~l~~ 202 (284)
....++++||..|+|++|..++.+|+ . .|++ |+++|.+++..+.++++ | ...-+.....+...... .-..
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak-~-~G~~~vi~~~~~~~~~~~~~~~----g-a~~~i~~~~~~~~~~~~~~~~~~ 231 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLAR-A-LGAEDVIGVDPSPERLELAKAL----G-ADFVINSGQDDVQEIRELTSGAG 231 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHH-H-cCCCEEEEECCCHHHHHHHHHh----C-CCEEEcCCcchHHHHHHHhCCCC
Confidence 33467899999999999999999998 3 5666 99999999999888765 3 11112222222111111 1137
Q ss_pred ccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 203 YDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 203 fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
+|+|+..... ...+....+.|+++|++++.+.
T Consensus 232 ~d~vid~~g~-------~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 232 ADVAIECSGN-------TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CCEEEECCCC-------HHHHHHHHHHhhcCCEEEEEcC
Confidence 9999987654 4456777889999999987653
No 248
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.78 E-value=5.7e-05 Score=73.48 Aligned_cols=105 Identities=21% Similarity=0.287 Sum_probs=70.1
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEE-------------EEcchhh
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKF-------------LTGDILQ 195 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~-------------~~~D~~~ 195 (284)
.++.+|+.+|+|+.|+.++.+++ ..|+.|+++|.+++..+.++++-... -.+.+ ...+..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak--~lGA~V~v~d~~~~rle~a~~lGa~~----v~v~~~e~g~~~~gYa~~~s~~~~~ 235 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAAN--SLGAIVRAFDTRPEVKEQVQSMGAEF----LELDFKEEGGSGDGYAKVMSEEFIA 235 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHcCCeE----EeccccccccccccceeecCHHHHH
Confidence 56799999999999999999998 35788999999999988888742110 00111 0011110
Q ss_pred -----hhccCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 196 -----VKEKLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 196 -----~~~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.......+|+||..+.+.-.+. +.-+.++..+.||||++++--.
T Consensus 236 ~~~~~~~e~~~~~DIVI~TalipG~~a-P~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 236 AEMELFAAQAKEVDIIITTALIPGKPA-PKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHHHhCCCCEEEECcccCCCCC-CeeehHHHHhhCCCCCEEEEee
Confidence 1112367999998886522111 1236778889999999987443
No 249
>PLN02740 Alcohol dehydrogenase-like
Probab=97.74 E-value=0.00016 Score=68.03 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=71.2
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEE--cchhhhhccC--CC
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLT--GDILQVKEKL--GE 202 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~--~D~~~~~~~l--~~ 202 (284)
.+++++||.+|+||+|+.++.+|+ . .|+ +|+++|.+++..+.|+++ | ...-+.... .+..+....+ +.
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak-~-~G~~~Vi~~~~~~~r~~~a~~~----G-a~~~i~~~~~~~~~~~~v~~~~~~g 268 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGAR-A-RGASKIIGVDINPEKFEKGKEM----G-ITDFINPKDSDKPVHERIREMTGGG 268 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH-H-CCCCcEEEEcCChHHHHHHHHc----C-CcEEEecccccchHHHHHHHHhCCC
Confidence 377899999999999999999998 3 456 699999999999998764 3 112222221 1232222222 36
Q ss_pred ccEEEEcCcCCCCHHHHHHHHHHHHhccccC-cEEEEEec
Q 039591 203 YDCIFLAALVGMSKEEKMKIIRHIRKYMKDG-GILLVRSA 241 (284)
Q Consensus 203 fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pG-G~lv~~~~ 241 (284)
+|+|+.+... ...+....+.+++| |++++.+.
T Consensus 269 ~dvvid~~G~-------~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 269 VDYSFECAGN-------VEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CCEEEECCCC-------hHHHHHHHHhhhcCCCEEEEEcc
Confidence 9999988764 45777888899997 99887663
No 250
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.72 E-value=0.00028 Score=57.07 Aligned_cols=85 Identities=22% Similarity=0.314 Sum_probs=61.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCccEEEEcCcC--CC------CHHHHHHHHHHHH
Q 039591 158 HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEYDCIFLAALV--GM------SKEEKMKIIRHIR 227 (284)
Q Consensus 158 ~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~fD~V~~~~~~--~~------~~~~k~~~l~~~~ 227 (284)
+|.++||.+++++.+++++++.+ +.++++++..+-..+...+ +.+|+++.+-+. |- .++.....++.+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~-~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG-LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT--GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC-CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 58999999999999999998855 5678999999887755434 379999887432 21 1345578999999
Q ss_pred hccccCcEEEEEeccc
Q 039591 228 KYMKDGGILLVRSAKG 243 (284)
Q Consensus 228 ~~L~pGG~lv~~~~~g 243 (284)
+.|+|||++++....|
T Consensus 80 ~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 80 ELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHEEEEEEEEEEE--S
T ss_pred HhhccCCEEEEEEeCC
Confidence 9999999999877443
No 251
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.72 E-value=0.00018 Score=63.41 Aligned_cols=76 Identities=20% Similarity=0.165 Sum_probs=56.5
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.++.+|+|||||-.|++..++.. .+++.++|+|||..+++..++....++ ...++...|...... -...|+.++
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~--~~~a~Y~a~DID~~~ve~l~~~l~~l~---~~~~~~v~Dl~~~~~-~~~~DlaLl 177 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPE--APGATYIAYDIDSQLVEFLNAFLAVLG---VPHDARVRDLLSDPP-KEPADLALL 177 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTS--STT-EEEEEESBHHHHHHHHHHHHHTT----CEEEEEE-TTTSHT-TSEESEEEE
T ss_pred CCCchhhhhhccCCceehhhccc--CCCcEEEEEeCCHHHHHHHHHHHHhhC---CCcceeEeeeeccCC-CCCcchhhH
Confidence 56899999999988988888875 578999999999999999999988865 567777788764322 256899887
Q ss_pred cC
Q 039591 209 AA 210 (284)
Q Consensus 209 ~~ 210 (284)
-=
T Consensus 178 lK 179 (251)
T PF07091_consen 178 LK 179 (251)
T ss_dssp ET
T ss_pred HH
Confidence 54
No 252
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=97.69 E-value=0.00029 Score=65.33 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=69.2
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEc---chhhhhccC---
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTG---DILQVKEKL--- 200 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~---D~~~~~~~l--- 200 (284)
...++++|+..|+||+|..++.+|+ . .|.+|+++|.+++..+.++++ | ....+..... |+.+....+
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~-~-~G~~vi~~~~~~~~~~~~~~~----G-a~~~i~~~~~~~~~~~~~~~~~t~~ 235 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAK-A-MGAAVVAIDIDPEKLEMMKGF----G-ADLTLNPKDKSAREVKKLIKAFAKA 235 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH-H-cCCeEEEEcCCHHHHHHHHHh----C-CceEecCccccHHHHHHHHHhhccc
Confidence 3467899999999999999999998 3 567899999999999988764 3 1122222222 222211111
Q ss_pred CCcc----EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 201 GEYD----CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 201 ~~fD----~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
..+| +|+.+... ...+..+.+.|++||+++..+
T Consensus 236 ~g~d~~~d~v~d~~g~-------~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 236 RGLRSTGWKIFECSGS-------KPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred CCCCCCcCEEEECCCC-------hHHHHHHHHHHhcCCeEEEEC
Confidence 2455 77766554 456677788999999998866
No 253
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=97.68 E-value=0.00046 Score=63.60 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=68.9
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEE
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCI 206 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V 206 (284)
..+++++||..|+|++|..++.+|+ ..|++|++++.+++..+.|+++ | .+..+.. .+ ...+.+|++
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~--~~G~~vi~~~~~~~~~~~a~~~----G-a~~vi~~--~~-----~~~~~~d~~ 227 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVAL--AQGATVHVMTRGAAARRLALAL----G-AASAGGA--YD-----TPPEPLDAA 227 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHH--HCCCeEEEEeCChHHHHHHHHh----C-Cceeccc--cc-----cCcccceEE
Confidence 3477899999999999999999998 3578899999999999888775 3 1111111 11 011468988
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+..... ...+....+.|++||++++.+
T Consensus 228 i~~~~~-------~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 228 ILFAPA-------GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred EECCCc-------HHHHHHHHHhhCCCcEEEEEe
Confidence 876554 246888889999999998866
No 254
>PLN02827 Alcohol dehydrogenase-like
Probab=97.68 E-value=0.00021 Score=67.26 Aligned_cols=99 Identities=20% Similarity=0.197 Sum_probs=70.0
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEE--cchhhhhccC--CC
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLT--GDILQVKEKL--GE 202 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~--~D~~~~~~~l--~~ 202 (284)
..++++||..|+|++|..++.+|+ . .|. .|+++|.+++..+.|+++ | ...-+.... .+..+...++ +.
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak-~-~G~~~vi~~~~~~~~~~~a~~l----G-a~~~i~~~~~~~~~~~~v~~~~~~g 263 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAK-L-RGASQIIGVDINPEKAEKAKTF----G-VTDFINPNDLSEPIQQVIKRMTGGG 263 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH-H-cCCCeEEEECCCHHHHHHHHHc----C-CcEEEcccccchHHHHHHHHHhCCC
Confidence 367899999999999999999998 3 455 699999999999888765 3 111222221 1332222111 36
Q ss_pred ccEEEEcCcCCCCHHHHHHHHHHHHhccccC-cEEEEEe
Q 039591 203 YDCIFLAALVGMSKEEKMKIIRHIRKYMKDG-GILLVRS 240 (284)
Q Consensus 203 fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pG-G~lv~~~ 240 (284)
+|+|+.+... ...+..+.+.+++| |++++.+
T Consensus 264 ~d~vid~~G~-------~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 264 ADYSFECVGD-------TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCEEEECCCC-------hHHHHHHHHhhccCCCEEEEEC
Confidence 9999987654 34677788899999 9998765
No 255
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.68 E-value=0.00018 Score=66.36 Aligned_cols=87 Identities=10% Similarity=0.221 Sum_probs=62.3
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.++.+++||||+|.|.|- .+.+ .|.+|++||..+- +..+. . ..+|++..+|........+.+|.+++
T Consensus 210 ~~g~~vlDLGAsPGGWT~-~L~~---rG~~V~AVD~g~l----~~~L~-~----~~~V~h~~~d~fr~~p~~~~vDwvVc 276 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTY-QLVR---RGMFVTAVDNGPM----AQSLM-D----TGQVEHLRADGFKFRPPRKNVDWLVC 276 (357)
T ss_pred CCCCEEEEeCCCCcHHHH-HHHH---cCCEEEEEechhc----CHhhh-C----CCCEEEEeccCcccCCCCCCCCEEEE
Confidence 678999999999877664 5555 4679999996552 22332 2 26899999998876443578999999
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccC
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDG 233 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pG 233 (284)
|... ...++.+-+.+++..|
T Consensus 277 Dmve-----~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 277 DMVE-----KPARVAELMAQWLVNG 296 (357)
T ss_pred eccc-----CHHHHHHHHHHHHhcC
Confidence 9753 2356667777777766
No 256
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=97.66 E-value=0.00036 Score=63.98 Aligned_cols=101 Identities=23% Similarity=0.245 Sum_probs=77.8
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEc-chhhhhccC--CCcc
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTG-DILQVKEKL--GEYD 204 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~-D~~~~~~~l--~~fD 204 (284)
.+++++|+.+|+|-.|+.++.-|+ .....+|+++|++++..++|+++-+. +-++-... |+.+...++ +..|
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~-~agA~~IiAvD~~~~Kl~~A~~fGAT-----~~vn~~~~~~vv~~i~~~T~gG~d 256 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAK-AAGAGRIIAVDINPEKLELAKKFGAT-----HFVNPKEVDDVVEAIVELTDGGAD 256 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHH-HcCCceEEEEeCCHHHHHHHHhcCCc-----eeecchhhhhHHHHHHHhcCCCCC
Confidence 378999999999999999999998 56677999999999999999987332 22222222 455444344 4899
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
.+|..... .+.+++..+..+++|..++...
T Consensus 257 ~~~e~~G~-------~~~~~~al~~~~~~G~~v~iGv 286 (366)
T COG1062 257 YAFECVGN-------VEVMRQALEATHRGGTSVIIGV 286 (366)
T ss_pred EEEEccCC-------HHHHHHHHHHHhcCCeEEEEec
Confidence 99988765 5688888889999999988763
No 257
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.65 E-value=0.00018 Score=57.88 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=49.9
Q ss_pred eEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhh
Q 039591 133 KVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQ 195 (284)
Q Consensus 133 ~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~ 195 (284)
.++|+||| .|..++.+++ ..++.+|+++|.+|.+.+.++++++..+ + .+++++...+.+
T Consensus 1 ~vlDiGa~-~G~~~~~~~~-~~~~~~v~~~E~~~~~~~~l~~~~~~n~-~-~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGAN-IGDTSLYFAR-KGAEGRVIAFEPLPDAYEILEENVKLNN-L-PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCC-ccHHHHHHHH-hCCCCEEEEEecCHHHHHHHHHHHHHcC-C-CcEEEEEeeeeC
Confidence 48999999 9999999998 5677799999999999999999987644 3 458888877764
No 258
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.64 E-value=0.00098 Score=60.26 Aligned_cols=82 Identities=18% Similarity=0.130 Sum_probs=60.2
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC-----C
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL-----G 201 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l-----~ 201 (284)
...++...+|.=-|-.|-+-..|.+ ..+.++++++|.||++++.|++.....+ .++++++++..+....+ +
T Consensus 20 ~~~~~giyiD~TlG~GGHS~~iL~~-l~~~~~li~~DrD~~Ai~~a~~~l~~~~---~r~~~v~~~F~~l~~~l~~~~i~ 95 (314)
T COG0275 20 APKPDGIYIDGTLGAGGHSRAILEK-LPDLGRLIGIDRDPQAIAIAKERLKEFD---GRVTLVHGNFANLAEALKELGIG 95 (314)
T ss_pred ccCCCcEEEEecCCCcHhHHHHHHh-CCCCCeEEEEcCCHHHHHHHHHHhhccC---CcEEEEeCcHHHHHHHHHhcCCC
Confidence 4467778888766633666555665 4445679999999999999999887643 79999999887654322 5
Q ss_pred CccEEEEcCcC
Q 039591 202 EYDCIFLAALV 212 (284)
Q Consensus 202 ~fD~V~~~~~~ 212 (284)
.+|-|+.+-++
T Consensus 96 ~vDGiL~DLGV 106 (314)
T COG0275 96 KVDGILLDLGV 106 (314)
T ss_pred ceeEEEEeccC
Confidence 88999876444
No 259
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=97.64 E-value=0.00022 Score=65.09 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=64.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
.++++||.+|+|++|+.++.+|+ . .|+ .|+++|.++++++.|.+. . .+ |..+. .-..+|+||
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak-~-~G~~~v~~~~~~~~rl~~a~~~----~----~i-----~~~~~--~~~g~Dvvi 205 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTK-A-AGGSPPAVWETNPRRRDGATGY----E----VL-----DPEKD--PRRDYRAIY 205 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHH-H-cCCceEEEeCCCHHHHHhhhhc----c----cc-----Chhhc--cCCCCCEEE
Confidence 45789999999999999999998 3 455 477889999887766542 1 01 10100 114699999
Q ss_pred EcCcCCCCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 208 LAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
.+... ...++.+.+.|++||++++.+.
T Consensus 206 d~~G~-------~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 206 DASGD-------PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ECCCC-------HHHHHHHHHhhhcCcEEEEEee
Confidence 88765 4567888999999999998763
No 260
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.63 E-value=0.00037 Score=62.44 Aligned_cols=102 Identities=15% Similarity=0.165 Sum_probs=71.0
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC---CCc
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL---GEY 203 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l---~~f 203 (284)
...++..|+|||.| .|..+..|++ .+.+++++|+|+...+..++.+.. ..+++++.+|+.++.... ...
T Consensus 27 ~~~~~~~VlEiGpG-~G~lT~~L~~---~~~~v~~vE~d~~~~~~L~~~~~~----~~~~~vi~~D~l~~~~~~~~~~~~ 98 (262)
T PF00398_consen 27 DLSEGDTVLEIGPG-PGALTRELLK---RGKRVIAVEIDPDLAKHLKERFAS----NPNVEVINGDFLKWDLYDLLKNQP 98 (262)
T ss_dssp TCGTTSEEEEESST-TSCCHHHHHH---HSSEEEEEESSHHHHHHHHHHCTT----CSSEEEEES-TTTSCGGGHCSSSE
T ss_pred CCCCCCEEEEeCCC-CccchhhHhc---ccCcceeecCcHhHHHHHHHHhhh----cccceeeecchhccccHHhhcCCc
Confidence 34578999999999 7888888887 348999999999999999987653 378999999998753321 244
Q ss_pred cEEEEcCcCCCCHHHHHHHHHHHHhcccc---CcEEEEEe
Q 039591 204 DCIFLAALVGMSKEEKMKIIRHIRKYMKD---GGILLVRS 240 (284)
Q Consensus 204 D~V~~~~~~~~~~~~k~~~l~~~~~~L~p---GG~lv~~~ 240 (284)
..|+.+-+.... ..++.++...-+. ...+++..
T Consensus 99 ~~vv~NlPy~is----~~il~~ll~~~~~g~~~~~l~vq~ 134 (262)
T PF00398_consen 99 LLVVGNLPYNIS----SPILRKLLELYRFGRVRMVLMVQK 134 (262)
T ss_dssp EEEEEEETGTGH----HHHHHHHHHHGGGCEEEEEEEEEH
T ss_pred eEEEEEecccch----HHHHHHHhhcccccccceEEEEeh
Confidence 566766554322 4677777664444 34445444
No 261
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.62 E-value=0.0011 Score=51.27 Aligned_cols=100 Identities=17% Similarity=0.240 Sum_probs=67.2
Q ss_pred EEEecCCCChHHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhh--hhccC-CCccEEEEc
Q 039591 134 VAFVGSGPMPLTSIVMAKNHLK-ATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQ--VKEKL-GEYDCIFLA 209 (284)
Q Consensus 134 VL~iGsGp~G~~ai~la~~~~~-~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~--~~~~l-~~fD~V~~~ 209 (284)
++++||| .|... .++. ..+ +..++++|.++.++..++..... ... ..+.+..+|... ..... ..||++...
T Consensus 52 ~ld~~~g-~g~~~-~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 126 (257)
T COG0500 52 VLDIGCG-TGRLA-LLAR-LGGRGAYVVGVDLSPEMLALARARAEG-AGL-GLVDFVVADALGGVLPFEDSASFDLVISL 126 (257)
T ss_pred eEEecCC-cCHHH-HHHH-hCCCCceEEEEeCCHHHHHHHHhhhhh-cCC-CceEEEEeccccCCCCCCCCCceeEEeee
Confidence 9999999 78765 4443 222 24899999999999996655432 211 116788888765 22221 269999433
Q ss_pred CcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 210 ALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 210 ~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
...... . ....+.++.+.++|+|.+++..
T Consensus 127 ~~~~~~-~-~~~~~~~~~~~l~~~g~~~~~~ 155 (257)
T COG0500 127 LVLHLL-P-PAKALRELLRVLKPGGRLVLSD 155 (257)
T ss_pred eehhcC-C-HHHHHHHHHHhcCCCcEEEEEe
Confidence 333222 1 6789999999999999998876
No 262
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.62 E-value=0.00045 Score=63.09 Aligned_cols=81 Identities=17% Similarity=0.128 Sum_probs=63.8
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC-----C
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL-----G 201 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l-----~ 201 (284)
...++..++|.=+| .|-.+..+++ ..+.++|+|+|.|+.+++.|++.++.. ..++++++++..++...+ .
T Consensus 17 ~~~~ggiyVD~TlG-~GGHS~~iL~-~l~~g~vigiD~D~~Al~~ak~~L~~~---~~R~~~i~~nF~~l~~~l~~~~~~ 91 (305)
T TIGR00006 17 NIKPDGIYIDCTLG-FGGHSKAILE-QLGTGRLIGIDRDPQAIAFAKERLSDF---EGRVVLIHDNFANFFEHLDELLVT 91 (305)
T ss_pred CcCCCCEEEEeCCC-ChHHHHHHHH-hCCCCEEEEEcCCHHHHHHHHHHHhhc---CCcEEEEeCCHHHHHHHHHhcCCC
Confidence 34677899999999 7777777777 345689999999999999999987653 368999999988754322 5
Q ss_pred CccEEEEcCcC
Q 039591 202 EYDCIFLAALV 212 (284)
Q Consensus 202 ~fD~V~~~~~~ 212 (284)
.+|.|+.|-++
T Consensus 92 ~vDgIl~DLGv 102 (305)
T TIGR00006 92 KIDGILVDLGV 102 (305)
T ss_pred cccEEEEeccC
Confidence 69999976444
No 263
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=97.61 E-value=0.00037 Score=65.18 Aligned_cols=99 Identities=20% Similarity=0.222 Sum_probs=69.9
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEE--cchhhhhccC--CC
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLT--GDILQVKEKL--GE 202 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~--~D~~~~~~~l--~~ 202 (284)
.+++++||..|+||+|+.++.+|+ . .|+ +|+++|.+++..+.|+++ | ...-+.... .+..+...++ +.
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak-~-~G~~~Vi~~~~~~~~~~~a~~~----G-a~~~i~~~~~~~~~~~~v~~~~~~g 255 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGAR-M-AKASRIIAIDINPAKFELAKKL----G-ATDCVNPNDYDKPIQEVIVEITDGG 255 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH-H-cCCCeEEEEcCCHHHHHHHHHh----C-CCeEEcccccchhHHHHHHHHhCCC
Confidence 367899999999999999999998 3 456 799999999999998775 3 112222221 1222211111 36
Q ss_pred ccEEEEcCcCCCCHHHHHHHHHHHHhccccC-cEEEEEe
Q 039591 203 YDCIFLAALVGMSKEEKMKIIRHIRKYMKDG-GILLVRS 240 (284)
Q Consensus 203 fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pG-G~lv~~~ 240 (284)
+|+|+.+... ...+....+.+++| |+++..+
T Consensus 256 ~d~vid~~G~-------~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 256 VDYSFECIGN-------VNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred CCEEEECCCC-------HHHHHHHHHHhhcCCCeEEEEe
Confidence 9999987654 45677788899886 9988766
No 264
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.001 Score=56.84 Aligned_cols=139 Identities=14% Similarity=0.181 Sum_probs=93.2
Q ss_pred HHHhhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh--cc
Q 039591 122 ILKENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK--EK 199 (284)
Q Consensus 122 ~l~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~--~~ 199 (284)
.|......++++||-+|+- .|.|.-.++. ..+.+.+.++|.++.....--..+++ ..+|--+.+|+.... ..
T Consensus 68 Gl~~~pi~~g~~VLYLGAa-sGTTvSHVSD-Iv~~G~iYaVEfs~R~~reLl~~a~~----R~Ni~PIL~DA~~P~~Y~~ 141 (231)
T COG1889 68 GLKNFPIKEGSKVLYLGAA-SGTTVSHVSD-IVGEGRIYAVEFSPRPMRELLDVAEK----RPNIIPILEDARKPEKYRH 141 (231)
T ss_pred CcccCCcCCCCEEEEeecc-CCCcHhHHHh-ccCCCcEEEEEecchhHHHHHHHHHh----CCCceeeecccCCcHHhhh
Confidence 3333344889999999999 9999988988 55678899999999988776666654 257888899987421 11
Q ss_pred C-CCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe-cc------chhhhcCCCCCCCCCCCcEEEEEEcCC
Q 039591 200 L-GEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS-AK------GARAFLYPVVERHDLLDFEVLSIFHPI 269 (284)
Q Consensus 200 l-~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~-~~------g~~~~lyp~v~~~~l~gf~~~~~~~p~ 269 (284)
+ +..|+||.+-.- +.+..-+..++...||+||.+++.- +. ..++.+-..++...-.+|+++...+-.
T Consensus 142 ~Ve~VDviy~DVAQ---p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~Le 216 (231)
T COG1889 142 LVEKVDVIYQDVAQ---PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLE 216 (231)
T ss_pred hcccccEEEEecCC---chHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccC
Confidence 2 789999998543 2344566778889999999666532 11 111111111111122689999886643
No 265
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=97.60 E-value=6.8e-05 Score=59.19 Aligned_cols=89 Identities=18% Similarity=0.230 Sum_probs=65.5
Q ss_pred CChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC---CCccEEEEcCcCCCCHH
Q 039591 141 PMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL---GEYDCIFLAALVGMSKE 217 (284)
Q Consensus 141 p~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l---~~fD~V~~~~~~~~~~~ 217 (284)
|+|+.++.+|+ + .|.+|+++|.++...+.++++-.. .-+.....|..+...++ ..+|+||.+...
T Consensus 1 ~vG~~a~q~ak-~-~G~~vi~~~~~~~k~~~~~~~Ga~-----~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~----- 68 (130)
T PF00107_consen 1 GVGLMAIQLAK-A-MGAKVIATDRSEEKLELAKELGAD-----HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS----- 68 (130)
T ss_dssp HHHHHHHHHHH-H-TTSEEEEEESSHHHHHHHHHTTES-----EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS-----
T ss_pred ChHHHHHHHHH-H-cCCEEEEEECCHHHHHHHHhhccc-----ccccccccccccccccccccccceEEEEecCc-----
Confidence 37999999998 4 459999999999999999886321 12222223333333222 479999999876
Q ss_pred HHHHHHHHHHhccccCcEEEEEeccc
Q 039591 218 EKMKIIRHIRKYMKDGGILLVRSAKG 243 (284)
Q Consensus 218 ~k~~~l~~~~~~L~pGG~lv~~~~~g 243 (284)
...++...+.++|||++++....+
T Consensus 69 --~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 --GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp --HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred --HHHHHHHHHHhccCCEEEEEEccC
Confidence 678999999999999999987544
No 266
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=5.2e-05 Score=62.36 Aligned_cols=128 Identities=16% Similarity=0.190 Sum_probs=85.5
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCC--CCeEEEEcchhh-hhccC-CCccE
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFE--KRMKFLTGDILQ-VKEKL-GEYDC 205 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~--~~v~~~~~D~~~-~~~~l-~~fD~ 205 (284)
.+.+|+++|+|-+|+.++++|. ..+...|...|-+++.++-.++.... +..+ .+.....-+... ..... ..||.
T Consensus 29 rg~~ilelgggft~laglmia~-~a~~~~v~ltdgne~svrnv~ki~~~-n~~s~~tsc~vlrw~~~~aqsq~eq~tFDi 106 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIAC-KAPDSSVWLTDGNEESVRNVEKIRNS-NMASSLTSCCVLRWLIWGAQSQQEQHTFDI 106 (201)
T ss_pred hHHHHHHhcCchhhhhhhheee-ecCCceEEEecCCHHHHHHHHHHHhc-ccccccceehhhHHHHhhhHHHHhhCcccE
Confidence 4679999999999999999998 56888999999999999888876543 1000 122121111111 11112 58999
Q ss_pred EEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEec---cchhhhcCCCCCCCCCCCcEEEE
Q 039591 206 IFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA---KGARAFLYPVVERHDLLDFEVLS 264 (284)
Q Consensus 206 V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~---~g~~~~lyp~v~~~~l~gf~~~~ 264 (284)
|+.+-.. ...+-+..+.+.+..+|+|.|.-++.+. +.+..|+ +.....||.++.
T Consensus 107 IlaADCl-FfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~----de~~~~gf~v~l 163 (201)
T KOG3201|consen 107 ILAADCL-FFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFL----DEVGTVGFTVCL 163 (201)
T ss_pred EEeccch-hHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHH----HHHHhceeEEEe
Confidence 9976533 2357789999999999999999777663 3344454 111235666654
No 267
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.55 E-value=0.00052 Score=61.70 Aligned_cols=110 Identities=22% Similarity=0.231 Sum_probs=83.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhcc--CCCCCeEEEEcchhhhhccC--CCcc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDF--EFEKRMKFLTGDILQVKEKL--GEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~--~l~~~v~~~~~D~~~~~~~l--~~fD 204 (284)
..+++|+.||.|-.| -....++ |..=..++-+|+|...++.+++....+. .-+.++..+-||...+.... ++||
T Consensus 120 ~npkkvlVVgggDgg-vlrevik-H~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGG-VLREVIK-HKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCeEEEEecCCcc-ceeeeec-cccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 788999999999444 4555556 4334579999999999999999887642 13478999999998876544 7899
Q ss_pred EEEEcCcCCC-CHH--HHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGM-SKE--EKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~-~~~--~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+|+.+..-.. +.. -...++..+.+.||+||+++...
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 9998863311 112 23678999999999999999876
No 268
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.54 E-value=0.0014 Score=55.48 Aligned_cols=98 Identities=21% Similarity=0.240 Sum_probs=67.6
Q ss_pred eEEEecCCCChHH-HHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhh-c------cCC--------CCCeEEEEcchhhh
Q 039591 133 KVAFVGSGPMPLT-SIVMAKNHLKATHFDNFDIDEAANNVARRIVAT-D------FEF--------EKRMKFLTGDILQV 196 (284)
Q Consensus 133 ~VL~iGsGp~G~~-ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~-~------~~l--------~~~v~~~~~D~~~~ 196 (284)
+|..||+|.+|.. +..++. .|.+|+.+|.|++.++.+++.++. + +.+ -.++++ ..|..+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~---~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~- 75 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR---AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEE- 75 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH---TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGG-
T ss_pred CEEEEcCCHHHHHHHHHHHh---CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHH-
Confidence 5899999998865 444554 689999999999999998887654 1 111 124553 344432
Q ss_pred hccCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 197 KEKLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 197 ~~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+...|+|+.+..- ..+-|.++|.++.+.++|+.+|...+
T Consensus 76 ---~~~adlViEai~E--~l~~K~~~~~~l~~~~~~~~ilasnT 114 (180)
T PF02737_consen 76 ---AVDADLVIEAIPE--DLELKQELFAELDEICPPDTILASNT 114 (180)
T ss_dssp ---GCTESEEEE-S-S--SHHHHHHHHHHHHCCS-TTSEEEE--
T ss_pred ---Hhhhheehhhccc--cHHHHHHHHHHHHHHhCCCceEEecC
Confidence 2479999998653 45889999999999999999998766
No 269
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=97.53 E-value=0.00075 Score=62.33 Aligned_cols=98 Identities=16% Similarity=0.152 Sum_probs=67.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcE-EEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc--cCCCcc-
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATH-FDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE--KLGEYD- 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~-V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~--~l~~fD- 204 (284)
.++++||..|+|++|..++.+|+ . .|.+ |++++.+++..+.+++. | ...-+.....+..+... .-..+|
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~-~-~G~~~v~~~~~~~~~~~~~~~~----G-a~~~i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAV-A-LGAKSVTAIDINSEKLALAKSL----G-AMQTFNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-H-cCCCeEEEECCCHHHHHHHHHc----C-CceEecCcccCHHHHHHHhcCCCCCe
Confidence 67889999999999999999998 3 4665 89999999999888654 3 11112222222111111 114688
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+||.+... ...+....+.|++||++++-+
T Consensus 232 ~v~d~~G~-------~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 232 LILETAGV-------PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred EEEECCCC-------HHHHHHHHHHhhcCCEEEEEc
Confidence 77766554 457788889999999999876
No 270
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=97.49 E-value=0.00066 Score=63.44 Aligned_cols=99 Identities=22% Similarity=0.223 Sum_probs=70.0
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEc--chhhhhccC--CC
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTG--DILQVKEKL--GE 202 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~--D~~~~~~~l--~~ 202 (284)
.+++++||..|+|++|..++.+|+ . .|. +|+++|.+++..+.++++ | ...-+..... +..+....+ +.
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak-~-~G~~~vi~~~~~~~~~~~~~~l----G-a~~~i~~~~~~~~~~~~v~~~~~~g 256 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAK-A-AGASRIIGIDINPDKFELAKKF----G-ATDCVNPKDHDKPIQQVLVEMTDGG 256 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH-H-cCCCeEEEEeCCHHHHHHHHHc----C-CCEEEcccccchHHHHHHHHHhCCC
Confidence 377899999999999999999998 3 466 799999999999988764 3 1122222221 232222111 47
Q ss_pred ccEEEEcCcCCCCHHHHHHHHHHHHhccccC-cEEEEEe
Q 039591 203 YDCIFLAALVGMSKEEKMKIIRHIRKYMKDG-GILLVRS 240 (284)
Q Consensus 203 fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pG-G~lv~~~ 240 (284)
+|+|+.+... ...+..+.+.++++ |+++..+
T Consensus 257 ~d~vid~~g~-------~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 257 VDYTFECIGN-------VKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred CcEEEECCCC-------hHHHHHHHHhhccCCCeEEEEc
Confidence 9999987553 35677788899987 9888765
No 271
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.48 E-value=0.0014 Score=53.04 Aligned_cols=101 Identities=20% Similarity=0.156 Sum_probs=69.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhc---CCCcEEEEEeCCHHHHHHHHHHHhhccC-CCCCeEEEEcchhhhhccCCCcc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNH---LKATHFDNFDIDEAANNVARRIVATDFE-FEKRMKFLTGDILQVKEKLGEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~---~~~~~V~~vDis~~~~~~A~~~~~~~~~-l~~~v~~~~~D~~~~~~~l~~fD 204 (284)
.++.+|+|+||| -|+.+..++... .++.+|+++|.++..++.|++..+..+. +..++++..++..+... ....+
T Consensus 24 ~~~~~vvD~GsG-~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSG-KGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred CCCCEEEEeCCC-hhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 677899999999 999999998610 3788999999999999999998877541 23668888887764322 24566
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEE
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILL 237 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv 237 (284)
+++--..-|. --..+++...+ |+...+
T Consensus 102 ~~vgLHaCG~---Ls~~~l~~~~~---~~~~~l 128 (141)
T PF13679_consen 102 ILVGLHACGD---LSDRALRLFIR---PNARFL 128 (141)
T ss_pred EEEEeecccc---hHHHHHHHHHH---cCCCEE
Confidence 6664433331 11455555544 554433
No 272
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=97.48 E-value=0.00075 Score=63.94 Aligned_cols=106 Identities=18% Similarity=0.189 Sum_probs=71.7
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcE-EEEEeCCHHHHHHHHHHHhhccCCCCCeEEEE-cchhhhhcc---CCC
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATH-FDNFDIDEAANNVARRIVATDFEFEKRMKFLT-GDILQVKEK---LGE 202 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~-V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~-~D~~~~~~~---l~~ 202 (284)
..++++||..|+||+|+.++.+|+ . .|.+ |++.|.+++..+.|+++ | . +.+.... .+..+...+ -..
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk-~-~Ga~~vi~~d~~~~r~~~a~~~----G-a-~~v~~~~~~~~~~~v~~~~~~~g 254 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQ-L-LGAAVVIVGDLNPARLAQARSF----G-C-ETVDLSKDATLPEQIEQILGEPE 254 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH-H-cCCceEEEeCCCHHHHHHHHHc----C-C-eEEecCCcccHHHHHHHHcCCCC
Confidence 467899999999999999999998 3 4554 66779999999998875 3 1 2121111 122221111 146
Q ss_pred ccEEEEcCcCCC-------CHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 203 YDCIFLAALVGM-------SKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 203 fD~V~~~~~~~~-------~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
+|+|+....... ...+....++++.+.+++||++++.+.
T Consensus 255 ~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 255 VDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 999998765410 011223578999999999999998763
No 273
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.46 E-value=0.00089 Score=63.09 Aligned_cols=104 Identities=21% Similarity=0.230 Sum_probs=78.0
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCC-cEEEEEeCCHHHHHHHHHHHhhccCCCC-CeEEEEcchhhhhc-cCCCccEE
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKA-THFDNFDIDEAANNVARRIVATDFEFEK-RMKFLTGDILQVKE-KLGEYDCI 206 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~-~~V~~vDis~~~~~~A~~~~~~~~~l~~-~v~~~~~D~~~~~~-~l~~fD~V 206 (284)
.+-+|||.=|| +|+=++..++ ..++ .+|++-|+|+++++..++|++. +++.. ++++.+.|+...+. .-..||+|
T Consensus 49 ~~~~~lDalaa-sGvR~iRy~~-E~~~~~~v~~NDi~~~a~~~i~~N~~~-N~~~~~~~~v~~~DAn~ll~~~~~~fD~I 125 (377)
T PF02005_consen 49 GPIRVLDALAA-SGVRGIRYAK-ELAGVDKVTANDISPEAVELIKRNLEL-NGLEDERIEVSNMDANVLLYSRQERFDVI 125 (377)
T ss_dssp S-EEEEETT-T-TSHHHHHHHH-H-SSECEEEEEES-HHHHHHHHHHHHH-CT-SGCCEEEEES-HHHHHCHSTT-EEEE
T ss_pred CCceEEecccc-ccHHHHHHHH-HcCCCCEEEEecCCHHHHHHHHHhHhh-ccccCceEEEehhhHHHHhhhccccCCEE
Confidence 45689999999 9999999998 4344 5899999999999999999876 44666 79999999987653 23789999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
=+|..- .. ..+++.+.+.++.||+|.+...
T Consensus 126 DlDPfG-Sp----~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 126 DLDPFG-SP----APFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp EE--SS-------HHHHHHHHHHEEEEEEEEEEE-
T ss_pred EeCCCC-Cc----cHhHHHHHHHhhcCCEEEEecc
Confidence 999743 33 6899999999999999999773
No 274
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.45 E-value=0.0012 Score=59.33 Aligned_cols=107 Identities=18% Similarity=0.227 Sum_probs=79.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhh---ccC------------------------
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVAT---DFE------------------------ 181 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~---~~~------------------------ 181 (284)
..+.+||.-||| +|-.+..+|+ .|..+.+.|.|--|+-..+=.+.. .+.
T Consensus 55 ~~~~~VLVPGsG-LGRLa~Eia~---~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~ 130 (270)
T PF07942_consen 55 RSKIRVLVPGSG-LGRLAWEIAK---LGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVR 130 (270)
T ss_pred CCccEEEEcCCC-cchHHHHHhh---ccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceE
Confidence 445799999999 9999999998 589999999999997665543331 000
Q ss_pred -----------CCCCeEEEEcchhhhhccC---CCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 182 -----------FEKRMKFLTGDILQVKEKL---GEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 182 -----------l~~~v~~~~~D~~~~~~~l---~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
...++....||..+....- +.||+|+.+-... .+++-.+.++.+.+.|||||+-+-.+
T Consensus 131 iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID-TA~Ni~~Yi~tI~~lLkpgG~WIN~G 202 (270)
T PF07942_consen 131 IPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID-TAENIIEYIETIEHLLKPGGYWINFG 202 (270)
T ss_pred eCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee-chHHHHHHHHHHHHHhccCCEEEecC
Confidence 1235777778887764443 6899998775443 35777899999999999999776544
No 275
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.44 E-value=0.00043 Score=59.55 Aligned_cols=87 Identities=22% Similarity=0.256 Sum_probs=51.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
++...|+|+||| -+..|.. ...+..|+.+|+-. . + +. ++.+|+...+.+.+.+|+++.
T Consensus 71 ~~~~viaD~GCG-dA~la~~----~~~~~~V~SfDLva-----------~-n---~~--Vtacdia~vPL~~~svDv~Vf 128 (219)
T PF05148_consen 71 PKSLVIADFGCG-DAKLAKA----VPNKHKVHSFDLVA-----------P-N---PR--VTACDIANVPLEDESVDVAVF 128 (219)
T ss_dssp -TTS-EEEES-T-T-HHHHH------S---EEEEESS------------S-S---TT--EEES-TTS-S--TT-EEEEEE
T ss_pred CCCEEEEECCCc-hHHHHHh----cccCceEEEeeccC-----------C-C---CC--EEEecCccCcCCCCceeEEEE
Confidence 345689999999 5544422 22356899999832 1 1 33 456898877666688999887
Q ss_pred cC-cCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AA-LVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~-~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+- +-| .+-..+++++.|.|||||.|.+-.
T Consensus 129 cLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 129 CLSLMG---TNWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp ES---S---S-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EhhhhC---CCcHHHHHHHHheeccCcEEEEEE
Confidence 64 333 345899999999999999998865
No 276
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.43 E-value=0.00099 Score=61.29 Aligned_cols=97 Identities=19% Similarity=0.280 Sum_probs=73.0
Q ss_pred CCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcC
Q 039591 131 PKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAA 210 (284)
Q Consensus 131 ~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~ 210 (284)
-...+|+|+| +|-.+-.+.. .+|. |.+++.|...+-.++.... ..|+.+-+|.+.- ...-|+||+-=
T Consensus 178 v~~avDvGgG-iG~v~k~ll~-~fp~--ik~infdlp~v~~~a~~~~------~gV~~v~gdmfq~---~P~~daI~mkW 244 (342)
T KOG3178|consen 178 VNVAVDVGGG-IGRVLKNLLS-KYPH--IKGINFDLPFVLAAAPYLA------PGVEHVAGDMFQD---TPKGDAIWMKW 244 (342)
T ss_pred CceEEEcCCc-HhHHHHHHHH-hCCC--CceeecCHHHHHhhhhhhc------CCcceeccccccc---CCCcCeEEEEe
Confidence 4788999999 9988888777 5665 6666666666666555543 2278888998753 34677888764
Q ss_pred cC-CCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 211 LV-GMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 211 ~~-~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.. ++.+++-.+++++|++.|+|||.|++..
T Consensus 245 iLhdwtDedcvkiLknC~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 245 ILHDWTDEDCVKILKNCKKSLPPGGKIIVVE 275 (342)
T ss_pred ecccCChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 33 5667888999999999999999998865
No 277
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=97.41 E-value=0.0013 Score=61.17 Aligned_cols=99 Identities=13% Similarity=0.064 Sum_probs=69.5
Q ss_pred cCCCCeEEEecC-CCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEc-chhhhhccC--CCc
Q 039591 128 VVQPKKVAFVGS-GPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTG-DILQVKEKL--GEY 203 (284)
Q Consensus 128 ~~~~~~VL~iGs-Gp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~-D~~~~~~~l--~~f 203 (284)
..++++||..|+ |++|..++.+|+ ..|++|++++.+++..+.+++.+ | ...-+..... +..+..... +.+
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk--~~G~~Vi~~~~~~~k~~~~~~~l---G-a~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAK--LHGCYVVGSAGSSQKVDLLKNKL---G-FDEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHH--HcCCEEEEEcCCHHHHHHHHHhc---C-CCEEEECCCcccHHHHHHHHCCCCc
Confidence 377899999998 889999999998 36789999999999888876322 3 1122332222 333222111 469
Q ss_pred cEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 204 DCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 204 D~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+|+.+.. ...+..+.+.|++||++++.+
T Consensus 230 D~v~d~vG--------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 230 DIYFDNVG--------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred EEEEECCC--------HHHHHHHHHHhccCCEEEEEC
Confidence 99997654 236778889999999998765
No 278
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=97.41 E-value=0.0014 Score=60.09 Aligned_cols=100 Identities=18% Similarity=0.145 Sum_probs=71.2
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
..++++||..|+|++|..++.+|+ ..|.+|++++.+++..+.+++. | ...-+.....+..+....++.+|+++
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~--~~G~~vi~~~~~~~~~~~~~~~----g-~~~~i~~~~~~~~~~~~~~~~~d~vi 233 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAA--KMGFRTVAISRGSDKADLARKL----G-AHHYIDTSKEDVAEALQELGGAKLIL 233 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHH--HCCCeEEEEeCChHHHHHHHHc----C-CcEEecCCCccHHHHHHhcCCCCEEE
Confidence 367889999999999999999998 3578899999999988888654 3 11222222233332222335699999
Q ss_pred EcCcCCCCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 208 LAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
..... ...+....+.|+++|.++..+.
T Consensus 234 ~~~g~-------~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 234 ATAPN-------AKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred ECCCc-------hHHHHHHHHHcccCCEEEEEec
Confidence 65432 3467788899999999997653
No 279
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=97.41 E-value=0.0012 Score=61.01 Aligned_cols=99 Identities=18% Similarity=0.236 Sum_probs=70.2
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC---CCc
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL---GEY 203 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l---~~f 203 (284)
..++++||..|+|++|..++.+|+ . .|. .|+++|.+++..+.+++. | ....+.....+..+....+ ..+
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak-~-~G~~~v~~~~~~~~~~~~~~~~----g-~~~~v~~~~~~~~~~i~~~~~~~~~ 236 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGAR-L-RGAGRIIAVGSRPNRVELAKEY----G-ATDIVDYKNGDVVEQILKLTGGKGV 236 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH-H-cCCCeEEEEeCCHHHHHHHHHc----C-CceEecCCCCCHHHHHHHHhCCCCC
Confidence 467899999999999999999998 3 455 699999999998888764 3 1122222222322211111 469
Q ss_pred cEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 204 DCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 204 D~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+|+.+... ...+..+.+.|+++|+++..+
T Consensus 237 d~vld~~g~-------~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 237 DAVIIAGGG-------QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred cEEEECCCC-------HHHHHHHHHHhhcCCEEEEec
Confidence 999987553 356788899999999998755
No 280
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.38 E-value=0.00074 Score=61.22 Aligned_cols=102 Identities=19% Similarity=0.227 Sum_probs=80.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
..+.+|..||.|-.|..+..+|- ..|+.|+-+|+|..++......+. .|++..-.+.........+.|+|+-
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~--glgA~Vtild~n~~rl~~ldd~f~------~rv~~~~st~~~iee~v~~aDlvIg 237 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI--GLGADVTILDLNIDRLRQLDDLFG------GRVHTLYSTPSNIEEAVKKADLVIG 237 (371)
T ss_pred CCCccEEEECCccccchHHHHHh--ccCCeeEEEecCHHHHhhhhHhhC------ceeEEEEcCHHHHHHHhhhccEEEE
Confidence 45679999999999999999986 678999999999999988777642 5677777777665555688999998
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEE
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~ 239 (284)
+-++.-. ..+.-+.++..+.||||++++=.
T Consensus 238 aVLIpga-kaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 238 AVLIPGA-KAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred EEEecCC-CCceehhHHHHHhcCCCcEEEEE
Confidence 8766333 22345778889999999998743
No 281
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.37 E-value=0.00048 Score=59.28 Aligned_cols=106 Identities=18% Similarity=0.231 Sum_probs=60.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhh--cC-CCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh-----ccC
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKN--HL-KATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK-----EKL 200 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~--~~-~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~-----~~l 200 (284)
.+|+.|+|+|.= -|-+++++|.. .. +.++|+++|++....+... .+..+ +.++|+|++||..+.. ..+
T Consensus 31 ~kPd~IIE~Gi~-~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~hp-~~~rI~~i~Gds~d~~~~~~v~~~ 106 (206)
T PF04989_consen 31 LKPDLIIETGIA-HGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESHP-MSPRITFIQGDSIDPEIVDQVREL 106 (206)
T ss_dssp H--SEEEEE--T-TSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG-----TTEEEEES-SSSTHHHHTSGSS
T ss_pred hCCCeEEEEecC-CCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--Hhhcc-ccCceEEEECCCCCHHHHHHHHHh
Confidence 478999999999 88899887752 12 6789999999766554422 22223 4689999999987521 122
Q ss_pred ---CCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 201 ---GEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 201 ---~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
....+|+.++.-. .+.-.+.++.....+++|+++++.+
T Consensus 107 ~~~~~~vlVilDs~H~--~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 107 ASPPHPVLVILDSSHT--HEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp ----SSEEEEESS------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred hccCCceEEEECCCcc--HHHHHHHHHHhCccCCCCCEEEEEe
Confidence 3456888887521 1334677888999999999999865
No 282
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=97.36 E-value=0.0007 Score=64.38 Aligned_cols=105 Identities=17% Similarity=0.244 Sum_probs=68.6
Q ss_pred CCCCeEEEec-CCCChHHHHHHHhhcCCC-cEEEEEeCCHHHHHHHHHHHhhccC-CCCCeEEEE----cchhhhhccC-
Q 039591 129 VQPKKVAFVG-SGPMPLTSIVMAKNHLKA-THFDNFDIDEAANNVARRIVATDFE-FEKRMKFLT----GDILQVKEKL- 200 (284)
Q Consensus 129 ~~~~~VL~iG-sGp~G~~ai~la~~~~~~-~~V~~vDis~~~~~~A~~~~~~~~~-l~~~v~~~~----~D~~~~~~~l- 200 (284)
+++++|+.+| +|++|+.++.+|++...| .+|+++|.+++.++.|+++...... .+....++. .+..+...++
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t 253 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELT 253 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHh
Confidence 6778999997 799999999999832113 3799999999999999986321110 001111221 2332222111
Q ss_pred --CCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 201 --GEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 201 --~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
..+|+|+.+... ...+....+.++++|.+++..
T Consensus 254 ~g~g~D~vid~~g~-------~~~~~~a~~~l~~~G~~v~~~ 288 (410)
T cd08238 254 GGQGFDDVFVFVPV-------PELVEEADTLLAPDGCLNFFA 288 (410)
T ss_pred CCCCCCEEEEcCCC-------HHHHHHHHHHhccCCeEEEEE
Confidence 469999987644 457788889999888776543
No 283
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=97.34 E-value=0.002 Score=58.87 Aligned_cols=98 Identities=17% Similarity=0.169 Sum_probs=68.6
Q ss_pred cCCCCeEEEec-CCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEc-chhhhhccC--CCc
Q 039591 128 VVQPKKVAFVG-SGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTG-DILQVKEKL--GEY 203 (284)
Q Consensus 128 ~~~~~~VL~iG-sGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~-D~~~~~~~l--~~f 203 (284)
..++++||..| +|++|..++.+|+ ..|.+|++++.+++..+.++++ | .+.-+..... +..+..... +.+
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk--~~G~~Vi~~~~s~~~~~~~~~l----G-a~~vi~~~~~~~~~~~~~~~~~~gv 208 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAK--LKGCKVVGAAGSDEKVAYLKKL----G-FDVAFNYKTVKSLEETLKKASPDGY 208 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHHc----C-CCEEEeccccccHHHHHHHhCCCCe
Confidence 37789999999 5889999999998 3678999999999998888664 3 1122222221 222211111 469
Q ss_pred cEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 204 DCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 204 D~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+|+..... ..+....+.|++||+++..+
T Consensus 209 dvv~d~~G~--------~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 209 DCYFDNVGG--------EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EEEEECCCH--------HHHHHHHHHhCcCcEEEEec
Confidence 999976542 34578889999999999765
No 284
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=97.34 E-value=0.0013 Score=61.32 Aligned_cols=100 Identities=21% Similarity=0.216 Sum_probs=69.2
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEc--chhhhhccC--CC
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTG--DILQVKEKL--GE 202 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~--D~~~~~~~l--~~ 202 (284)
..++++||..|+|++|..++.+|+ . .|. +|+++|.+++..+.++++ | ...-+..... +..+...++ +.
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~-~-~G~~~Vi~~~~~~~~~~~~~~~----g-a~~~i~~~~~~~~~~~~~~~~~~~g 254 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAK-I-AGASRIIGVDINEDKFEKAKEF----G-ATDFINPKDSDKPVSEVIREMTGGG 254 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH-H-cCCCeEEEEeCCHHHHHHHHHc----C-CCcEeccccccchHHHHHHHHhCCC
Confidence 377899999999999999999998 3 456 799999999999988764 3 1111222111 111111111 57
Q ss_pred ccEEEEcCcCCCCHHHHHHHHHHHHhccccC-cEEEEEec
Q 039591 203 YDCIFLAALVGMSKEEKMKIIRHIRKYMKDG-GILLVRSA 241 (284)
Q Consensus 203 fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pG-G~lv~~~~ 241 (284)
+|+|+..... ...+....+.++++ |+++..+.
T Consensus 255 ~d~vid~~g~-------~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 255 VDYSFECTGN-------ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CCEEEECCCC-------hHHHHHHHHhcccCCCEEEEEcC
Confidence 9999987653 35677788899886 99987663
No 285
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=97.33 E-value=0.0011 Score=62.39 Aligned_cols=106 Identities=18% Similarity=0.193 Sum_probs=72.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcc-hhhhhccC---CCc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGD-ILQVKEKL---GEY 203 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D-~~~~~~~l---~~f 203 (284)
.++.+||.+|+|++|..++.+|+ . .|. +|+++|.+++..+.+++... . ..+.+...+ ..+...++ ..+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~-~-~g~~~vi~~~~~~~~~~~~~~~~~----~-~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAK-L-LGAERVIAIDRVPERLEMARSHLG----A-ETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-H-cCCCEEEEEcCCHHHHHHHHHcCC----c-EEEcCCcchHHHHHHHHHcCCCCC
Confidence 67889999999988999999998 3 454 69999999999999887621 1 222332332 22211121 369
Q ss_pred cEEEEcCcCCC--------------CHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 204 DCIFLAALVGM--------------SKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 204 D~V~~~~~~~~--------------~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
|+|+.+..... ...++...++.+.+.|++||+++..+.
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 99998653210 011235678889999999999998763
No 286
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=97.33 E-value=0.0015 Score=60.93 Aligned_cols=100 Identities=16% Similarity=0.208 Sum_probs=69.3
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEE--cchhhhhccC--CC
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLT--GDILQVKEKL--GE 202 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~--~D~~~~~~~l--~~ 202 (284)
..++++||..|+|++|..++.+|+ . .|. +|+++|.+++..+.++++ | ...-+.... .+..+....+ +.
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak-~-~G~~~vi~~~~~~~~~~~~~~~----G-a~~~i~~~~~~~~~~~~v~~~~~~~ 257 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGAR-I-RGASRIIGVDLNPSKFEQAKKF----G-VTEFVNPKDHDKPVQEVIAEMTGGG 257 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH-H-cCCCeEEEEcCCHHHHHHHHHc----C-CceEEcccccchhHHHHHHHHhCCC
Confidence 378899999999999999999998 3 456 899999999999988764 3 111222221 1121111111 46
Q ss_pred ccEEEEcCcCCCCHHHHHHHHHHHHhccccC-cEEEEEec
Q 039591 203 YDCIFLAALVGMSKEEKMKIIRHIRKYMKDG-GILLVRSA 241 (284)
Q Consensus 203 fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pG-G~lv~~~~ 241 (284)
+|+|+..... ...+..+.+.+++| |++++.+.
T Consensus 258 ~d~vid~~G~-------~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 258 VDYSFECTGN-------IDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred CCEEEECCCC-------hHHHHHHHHHhhcCCCEEEEECc
Confidence 9999987543 35667778899996 99987663
No 287
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=97.33 E-value=0.0015 Score=61.41 Aligned_cols=96 Identities=15% Similarity=0.146 Sum_probs=65.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHH-HHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAA-NNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~-~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
.++++|+..|+|++|..++.+|+ ..|++|++++.+++. .+.++++ | ...-+.. .+........+.+|+|+
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak--~~Ga~Vi~~~~~~~~~~~~a~~l----G-a~~~i~~--~~~~~v~~~~~~~D~vi 247 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGK--AFGLRVTVISRSSEKEREAIDRL----G-ADSFLVT--TDSQKMKEAVGTMDFII 247 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHH--HcCCeEEEEeCChHHhHHHHHhC----C-CcEEEcC--cCHHHHHHhhCCCcEEE
Confidence 47899999999999999999998 357889999987654 5555443 3 1111111 11111111124699999
Q ss_pred EcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.+... ...+..+.+.+++||+++..+
T Consensus 248 d~~G~-------~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 248 DTVSA-------EHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred ECCCc-------HHHHHHHHHhhcCCCEEEEEc
Confidence 87654 346778889999999998765
No 288
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.29 E-value=0.0027 Score=58.63 Aligned_cols=101 Identities=20% Similarity=0.196 Sum_probs=69.4
Q ss_pred CCeEEEecCCCChHHHHH-HHhhcCCCcEEEEEeCCHHHHHHHHHHHhh-------cc----CCCCCeEEEEcchhhhhc
Q 039591 131 PKKVAFVGSGPMPLTSIV-MAKNHLKATHFDNFDIDEAANNVARRIVAT-------DF----EFEKRMKFLTGDILQVKE 198 (284)
Q Consensus 131 ~~~VL~iGsGp~G~~ai~-la~~~~~~~~V~~vDis~~~~~~A~~~~~~-------~~----~l~~~v~~~~~D~~~~~~ 198 (284)
-++|..||+|.+|..-.. ++. .|.+|+.+|.+++..+.++..+.. .+ ....++++. .|..+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~---aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~--- 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALA---HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA--- 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH---
Confidence 368999999998876433 443 789999999999998877664321 11 001234433 23322
Q ss_pred cCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 199 KLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 199 ~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.+...|+|+.+..- ..+-|..++.++.+.++|+.+|...+
T Consensus 80 av~~aDlViEavpE--~l~vK~~lf~~l~~~~~~~aIlaSnT 119 (321)
T PRK07066 80 CVADADFIQESAPE--REALKLELHERISRAAKPDAIIASST 119 (321)
T ss_pred HhcCCCEEEECCcC--CHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 23679999998654 34679999999999999998555444
No 289
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=97.28 E-value=0.0019 Score=60.29 Aligned_cols=96 Identities=14% Similarity=0.174 Sum_probs=64.1
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHH-HHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANN-VARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~-~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
.++++||..|+|++|+.++.+|+ ..|++|++++.+++... .++++ | ...-+. ..+..+.....+.+|+|+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak--~~Ga~vi~~~~~~~~~~~~~~~~----G-a~~vi~--~~~~~~~~~~~~~~D~vi 252 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGK--AFGLKVTVISSSSNKEDEAINRL----G-ADSFLV--STDPEKMKAAIGTMDYII 252 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCcchhhhHHHhC----C-CcEEEc--CCCHHHHHhhcCCCCEEE
Confidence 57889999999999999999998 35778988888776543 33332 3 111111 111111111124699999
Q ss_pred EcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
..... ...+.++.+.+++||+++..+
T Consensus 253 d~~g~-------~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 253 DTVSA-------VHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred ECCCC-------HHHHHHHHHHhcCCcEEEEeC
Confidence 77653 346778889999999998765
No 290
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.21 E-value=0.00043 Score=60.20 Aligned_cols=103 Identities=10% Similarity=0.039 Sum_probs=77.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
+....+++|||| .|..+..+.. ..-.+++-+|.|-.|++.++..- . + +-.+....+|-........++|+|+.
T Consensus 71 k~fp~a~diGcs-~G~v~rhl~~--e~vekli~~DtS~~M~~s~~~~q-d-p--~i~~~~~v~DEE~Ldf~ens~DLiis 143 (325)
T KOG2940|consen 71 KSFPTAFDIGCS-LGAVKRHLRG--EGVEKLIMMDTSYDMIKSCRDAQ-D-P--SIETSYFVGDEEFLDFKENSVDLIIS 143 (325)
T ss_pred hhCcceeecccc-hhhhhHHHHh--cchhheeeeecchHHHHHhhccC-C-C--ceEEEEEecchhcccccccchhhhhh
Confidence 455689999999 9988877765 23457999999999999988752 1 2 34567778886544434478999998
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEE
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~ 239 (284)
....+|. .+.+..+.+|...|||.|.++..
T Consensus 144 SlslHW~-NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 144 SLSLHWT-NDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhh-ccCchHHHHHHHhcCCCccchhH
Confidence 7655543 45578889999999999999853
No 291
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=97.20 E-value=0.0029 Score=58.40 Aligned_cols=100 Identities=18% Similarity=0.169 Sum_probs=71.4
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC---CCc
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL---GEY 203 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l---~~f 203 (284)
..++++|+..|+|++|..++.+|+ ..|. +|++++.+++..+.+++. | ...-+.....+..+...++ +.+
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~--~~G~~~v~~~~~~~~~~~~~~~~----g-a~~~i~~~~~~~~~~l~~~~~~~~~ 242 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALK--AAGASKIIVSEPSEARRELAEEL----G-ATIVLDPTEVDVVAEVRKLTGGGGV 242 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH--HcCCCEEEEECCCHHHHHHHHHh----C-CCEEECCCccCHHHHHHHHhCCCCC
Confidence 367889999999999999999998 3566 899999999999888764 3 1122233333333222111 359
Q ss_pred cEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 204 DCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 204 D~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
|+|+.+... ...++.+.+.|++||+++..+.
T Consensus 243 d~vid~~g~-------~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 243 DVSFDCAGV-------QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CEEEECCCC-------HHHHHHHHHhccCCCEEEEEcc
Confidence 999987654 3467888899999999987663
No 292
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.19 E-value=0.0012 Score=62.24 Aligned_cols=101 Identities=16% Similarity=0.207 Sum_probs=65.3
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEc
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLA 209 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~ 209 (284)
++.+|+.+|+|+.|..++..++ ..|++|+.+|.+++..+.+.+.. + ..+.....+..+....+..+|+|+.+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~--~lGa~V~v~d~~~~~~~~l~~~~---g---~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMAN--GLGATVTILDINIDRLRQLDAEF---G---GRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHH--HCCCeEEEEECCHHHHHHHHHhc---C---ceeEeccCCHHHHHHHHccCCEEEEc
Confidence 5678999999999999999887 35679999999998876655432 2 22222222222222234689999987
Q ss_pred CcC-CCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 210 ALV-GMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 210 ~~~-~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
... +.. .. .-+-++..+.|+||++++-..
T Consensus 238 ~~~~g~~-~p-~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAK-AP-KLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCC-CC-cCcCHHHHhcCCCCCEEEEEe
Confidence 643 211 01 113356667899999887654
No 293
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=97.19 E-value=0.003 Score=57.45 Aligned_cols=98 Identities=15% Similarity=0.126 Sum_probs=69.1
Q ss_pred cCCCCeEEEec-CCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCcc
Q 039591 128 VVQPKKVAFVG-SGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEYD 204 (284)
Q Consensus 128 ~~~~~~VL~iG-sGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~fD 204 (284)
..++++||..| +|+.|..++.+|+ ..|.+|++++.+++..+.++++ | ...-+.....|..+....+ +.+|
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~--~~G~~vi~~~~s~~~~~~l~~~----G-a~~vi~~~~~~~~~~v~~~~~~gvd 213 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAK--IKGCKVIGCAGSDDKVAWLKEL----G-FDAVFNYKTVSLEEALKEAAPDGID 213 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHHc----C-CCEEEeCCCccHHHHHHHHCCCCcE
Confidence 36789999998 5889999999998 3678999999999998888764 3 2222333233433222111 5699
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+|+.... ...+....+.++++|+++..+
T Consensus 214 ~vld~~g--------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 214 CYFDNVG--------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred EEEECCC--------HHHHHHHHHhhccCCEEEEEc
Confidence 9996543 245678889999999998754
No 294
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=97.16 E-value=0.0022 Score=58.42 Aligned_cols=98 Identities=21% Similarity=0.247 Sum_probs=68.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh--ccCCCccEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK--EKLGEYDCI 206 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~--~~l~~fD~V 206 (284)
.++.+||..|+|+.|..++.+|+ ..|.+|++++.+++..+.+++. | ....+.....+..+.. ..-+.+|+|
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~--~~G~~V~~~~~s~~~~~~~~~~----g-~~~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAK--AMGAAVIAVDIKEEKLELAKEL----G-ADEVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHH--HcCCEEEEEcCCHHHHHHHHHh----C-CCEEEcCCCcCHHHHHHHhcCCCceEE
Confidence 67789999999988999999998 3578899999999998888653 3 1111111111221111 112579999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+.+... ...++.+.+.|++||.++..+
T Consensus 237 id~~g~-------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 237 FDFVGT-------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EECCCC-------HHHHHHHHHHhhcCCEEEEEC
Confidence 977543 457888899999999998764
No 295
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.16 E-value=0.0016 Score=65.94 Aligned_cols=111 Identities=16% Similarity=0.200 Sum_probs=73.0
Q ss_pred CCCeEEEecCCCChHHHHHHHhhc------CC-----CcEEEEEeCCH---HH-----------HHHHHHHHhhcc----
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNH------LK-----ATHFDNFDIDE---AA-----------NNVARRIVATDF---- 180 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~------~~-----~~~V~~vDis~---~~-----------~~~A~~~~~~~~---- 180 (284)
..-+|+|+|-| +|+..+...+.. .+ ..+++++|..| +. .+.++++.+..+
T Consensus 57 ~~~~i~e~gfG-~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 57 RRFVIAETGFG-TGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CcEEEEecCcc-hHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 34589999999 999877655421 12 24799999765 22 222333332211
Q ss_pred CC------CC--CeEEEEcchhhhhccC-CCccEEEEcCcCCCCHHH--HHHHHHHHHhccccCcEEEEEec
Q 039591 181 EF------EK--RMKFLTGDILQVKEKL-GEYDCIFLAALVGMSKEE--KMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 181 ~l------~~--~v~~~~~D~~~~~~~l-~~fD~V~~~~~~~~~~~~--k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
++ .. ++++..||+.+....+ ..||++|.+++...-.++ ..++|.++++.++|||+++.-+.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~ 207 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS 207 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh
Confidence 11 11 4567789998877666 569999999765311011 27899999999999999997664
No 296
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=97.14 E-value=0.0042 Score=57.84 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=66.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.++++|+..|+|++|..++.+|+ ..|.++++++.+++....+.+. +| . +. .+...+..........+|+|+.
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak--~~G~~vi~~~~~~~~~~~~~~~---~G-a-~~-~i~~~~~~~~~~~~~~~D~vid 250 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAK--AMGHHVTVISSSDKKREEALEH---LG-A-DD-YLVSSDAAEMQEAADSLDYIID 250 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHH--HCCCeEEEEeCCHHHHHHHHHh---cC-C-cE-EecCCChHHHHHhcCCCcEEEE
Confidence 57889999999999999999998 3577899999888776555432 23 1 11 1111111111111246999998
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+... ...++.+.+.+++||+++..+
T Consensus 251 ~~g~-------~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 251 TVPV-------FHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred CCCc-------hHHHHHHHHHhccCCEEEEEC
Confidence 7653 346777888999999999866
No 297
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.12 E-value=0.0034 Score=59.65 Aligned_cols=89 Identities=18% Similarity=0.051 Sum_probs=64.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
..+++|+.+|+|++|......++ ..|++|+++|.||.....|+.. | ..+ .+..+. +...|+|+.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak--~~Ga~ViV~d~dp~r~~~A~~~----G-----~~v--~~leea---l~~aDVVIt 256 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRAR--GMGARVIVTEVDPIRALEAAMD----G-----FRV--MTMEEA---AKIGDIFIT 256 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHh--hCcCEEEEEeCChhhHHHHHhc----C-----CEe--CCHHHH---HhcCCEEEE
Confidence 57899999999999999988887 4678999999999765444421 3 122 122222 256899998
Q ss_pred cCcCCCCHHHHHHHHH-HHHhccccCcEEEEEe
Q 039591 209 AALVGMSKEEKMKIIR-HIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~-~~~~~L~pGG~lv~~~ 240 (284)
+... ..++. .....||+|++++..+
T Consensus 257 aTG~-------~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 257 ATGN-------KDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred CCCC-------HHHHHHHHHhcCCCCcEEEEEC
Confidence 7653 45554 4778999999998765
No 298
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=97.06 E-value=0.0031 Score=57.96 Aligned_cols=95 Identities=9% Similarity=0.119 Sum_probs=65.4
Q ss_pred CeEEEecC-CCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCccEEE
Q 039591 132 KKVAFVGS-GPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEYDCIF 207 (284)
Q Consensus 132 ~~VL~iGs-Gp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~fD~V~ 207 (284)
++||..|+ |++|..++.+|+ + .|+ +|++++.+++..+.+++.+ | .+..+.....+..+....+ +++|+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk-~-~G~~~Vi~~~~s~~~~~~~~~~l---G-a~~vi~~~~~~~~~~i~~~~~~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGR-L-LGCSRVVGICGSDEKCQLLKSEL---G-FDAAINYKTDNVAERLRELCPEGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHH-H-cCCCEEEEEcCCHHHHHHHHHhc---C-CcEEEECCCCCHHHHHHHHCCCCceEEE
Confidence 89999997 889999999998 3 566 7999999999888877632 3 1222222223333222111 5799999
Q ss_pred EcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.+... ..+..+.+.|++||+++..+
T Consensus 230 d~~g~--------~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 230 DNVGG--------EISDTVISQMNENSHIILCG 254 (345)
T ss_pred ECCCc--------HHHHHHHHHhccCCEEEEEe
Confidence 76542 23577888999999998754
No 299
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=97.06 E-value=0.0049 Score=57.00 Aligned_cols=99 Identities=14% Similarity=0.142 Sum_probs=73.3
Q ss_pred cCCCCeEEEec-CCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC---CCc
Q 039591 128 VVQPKKVAFVG-SGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL---GEY 203 (284)
Q Consensus 128 ~~~~~~VL~iG-sGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l---~~f 203 (284)
.+++++||..| +|-.|..++.||+ . .|+.++++--+++..+.++++-. +.-+.+...|+.+...++ .++
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk-~-~G~~~v~~~~s~~k~~~~~~lGA-----d~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAK-A-LGATVVAVVSSSEKLELLKELGA-----DHVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHH-H-cCCcEEEEecCHHHHHHHHhcCC-----CEEEcCCcccHHHHHHHHcCCCCc
Confidence 37789999998 6668999999999 3 34477777777777767666632 244667777776655444 369
Q ss_pred cEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 204 DCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 204 D~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
|+|+.... ...+....+.|+++|+++....
T Consensus 213 Dvv~D~vG--------~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 213 DVVLDTVG--------GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred eEEEECCC--------HHHHHHHHHHhccCCEEEEEec
Confidence 99997754 4677778899999999998774
No 300
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.008 Score=55.77 Aligned_cols=111 Identities=15% Similarity=0.123 Sum_probs=80.0
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCC--CcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc-------
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLK--ATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE------- 198 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~--~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~------- 198 (284)
.+++++|||.++-|.|-|+..+...+.. .+.|++=|.|+.++.+-+.-...+. +....+...|+.....
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~--~~~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP--SPNLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC--CcceeeecccceeccccccccCc
Confidence 3899999999999999988777662322 3479999999999999888776654 3455555555543221
Q ss_pred --cCCCccEEEEcCcCCCC----------------------HHHHHHHHHHHHhccccCcEEEEEe
Q 039591 199 --KLGEYDCIFLAALVGMS----------------------KEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 199 --~l~~fD~V~~~~~~~~~----------------------~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+...||-|+++.+...+ ..-..+++.+..+.||+||.+|+.+
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 12579999988643110 0123678999999999999999976
No 301
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=97.05 E-value=0.0058 Score=55.88 Aligned_cols=100 Identities=14% Similarity=0.212 Sum_probs=69.1
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEE-cchhhhhc-cCCCccE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLT-GDILQVKE-KLGEYDC 205 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~-~D~~~~~~-~l~~fD~ 205 (284)
..++++||..|+|++|..++.+|+ ...|.+|++++.+++..+.+++. | .+.-+.... .+..+... ..+.+|.
T Consensus 160 ~~~g~~vlV~g~g~vG~~~~~la~-~~~g~~v~~~~~~~~~~~~~~~~----g-~~~v~~~~~~~~~~~~v~~~~~~~d~ 233 (338)
T PRK09422 160 IKPGQWIAIYGAGGLGNLALQYAK-NVFNAKVIAVDINDDKLALAKEV----G-ADLTINSKRVEDVAKIIQEKTGGAHA 233 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHH-HhCCCeEEEEeCChHHHHHHHHc----C-CcEEecccccccHHHHHHHhcCCCcE
Confidence 377899999999999999999998 33478999999999999888654 3 111112111 12111111 1246887
Q ss_pred EEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
++.+... ...++.+.+.++++|.++..+
T Consensus 234 vi~~~~~-------~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 234 AVVTAVA-------KAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred EEEeCCC-------HHHHHHHHHhccCCCEEEEEe
Confidence 7666543 456888899999999998754
No 302
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.05 E-value=0.0044 Score=56.42 Aligned_cols=100 Identities=23% Similarity=0.188 Sum_probs=74.9
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEE--EcchhhhhccC--CCc
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFL--TGDILQVKEKL--GEY 203 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~--~~D~~~~~~~l--~~f 203 (284)
..++++++.+|.|..|+..+.-|+ .....+++++|++++..+.|++.-.. +-++-. +..+.+...+. +.+
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gak-a~GAsrIIgvDiN~~Kf~~ak~fGaT-----e~iNp~d~~~~i~evi~EmTdgGv 263 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAK-AAGASRIIGVDINPDKFEKAKEFGAT-----EFINPKDLKKPIQEVIIEMTDGGV 263 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHH-hcCcccEEEEecCHHHHHHHHhcCcc-----eecChhhccccHHHHHHHHhcCCc
Confidence 378999999999999999999998 55677999999999999999987332 222211 11233333332 789
Q ss_pred cEEEEcCcCCCCHHHHHHHHHHHHhccccC-cEEEEEe
Q 039591 204 DCIFLAALVGMSKEEKMKIIRHIRKYMKDG-GILLVRS 240 (284)
Q Consensus 204 D~V~~~~~~~~~~~~k~~~l~~~~~~L~pG-G~lv~~~ 240 (284)
|.-|.+... ..+++++....+.| |.-++..
T Consensus 264 DysfEc~G~-------~~~m~~al~s~h~GwG~sv~iG 294 (375)
T KOG0022|consen 264 DYSFECIGN-------VSTMRAALESCHKGWGKSVVIG 294 (375)
T ss_pred eEEEEecCC-------HHHHHHHHHHhhcCCCeEEEEE
Confidence 999988765 67888888889999 8766655
No 303
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.04 E-value=0.0037 Score=56.71 Aligned_cols=99 Identities=18% Similarity=0.293 Sum_probs=69.5
Q ss_pred CeEEEecCCCChHHHHH-HHhhcCCCcEEEEEeCCHHHHHHHHHHHhhc-------cCCC--------CCeEEEEcchhh
Q 039591 132 KKVAFVGSGPMPLTSIV-MAKNHLKATHFDNFDIDEAANNVARRIVATD-------FEFE--------KRMKFLTGDILQ 195 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~-la~~~~~~~~V~~vDis~~~~~~A~~~~~~~-------~~l~--------~~v~~~~~D~~~ 195 (284)
.+|..||+|.+|..-.. +++ .|.+|+.+|.+++.++.+++.+.+. |.+. .++++ ..|..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~---~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~- 80 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR---AGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLG- 80 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHH-
Confidence 48999999998876433 444 6899999999999999877654321 1110 12322 33432
Q ss_pred hhccCCCccEEEEcCcCCCCHHHHHHHHHHHHhcc-ccCcEEEEEe
Q 039591 196 VKEKLGEYDCIFLAALVGMSKEEKMKIIRHIRKYM-KDGGILLVRS 240 (284)
Q Consensus 196 ~~~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L-~pGG~lv~~~ 240 (284)
.+...|+|+.+..- ..+-|..++..+.+.+ +|+.+++..+
T Consensus 81 ---~~~~~d~ViEav~E--~~~~K~~l~~~l~~~~~~~~~il~snT 121 (286)
T PRK07819 81 ---DFADRQLVIEAVVE--DEAVKTEIFAELDKVVTDPDAVLASNT 121 (286)
T ss_pred ---HhCCCCEEEEeccc--CHHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 23679999998653 4578899999999988 8888887655
No 304
>PRK10083 putative oxidoreductase; Provisional
Probab=97.03 E-value=0.0065 Score=55.64 Aligned_cols=100 Identities=13% Similarity=0.030 Sum_probs=68.3
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC-CCccE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL-GEYDC 205 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l-~~fD~ 205 (284)
..++++|+..|+|++|..++.+|+ ...|. .++++|.+++..+.+++. | .+.-+.....+..+..... ..+|+
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~-~~~G~~~v~~~~~~~~~~~~~~~~----G-a~~~i~~~~~~~~~~~~~~g~~~d~ 231 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLK-GVYNVKAVIVADRIDERLALAKES----G-ADWVINNAQEPLGEALEEKGIKPTL 231 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH-HhCCCCEEEEEcCCHHHHHHHHHh----C-CcEEecCccccHHHHHhcCCCCCCE
Confidence 367889999999999999999987 32355 588999999999888875 2 1122222222333222211 23568
Q ss_pred EEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+..... ...+....+.|+++|+++..+
T Consensus 232 vid~~g~-------~~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 232 IIDAACH-------PSILEEAVTLASPAARIVLMG 259 (339)
T ss_pred EEECCCC-------HHHHHHHHHHhhcCCEEEEEc
Confidence 8876543 346778889999999999765
No 305
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=97.01 E-value=0.0051 Score=57.38 Aligned_cols=99 Identities=18% Similarity=0.188 Sum_probs=68.6
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEc--chhhhhcc--CCC
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTG--DILQVKEK--LGE 202 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~--D~~~~~~~--l~~ 202 (284)
..++++||..|+|++|..++.+|+ . .|. .|++++.+++..+.++++ | ....+..... +..+...+ -+.
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~-~-~G~~~v~~~~~~~~~~~~~~~~----g-~~~~v~~~~~~~~~~~~l~~~~~~~ 253 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCK-A-AGASRIIAVDINKDKFEKAKQL----G-ATECINPRDQDKPIVEVLTEMTDGG 253 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH-H-cCCCeEEEEeCCHHHHHHHHHh----C-CCeecccccccchHHHHHHHHhCCC
Confidence 367899999999999999999998 3 455 589999999999888664 2 1122222222 22221111 157
Q ss_pred ccEEEEcCcCCCCHHHHHHHHHHHHhccc-cCcEEEEEe
Q 039591 203 YDCIFLAALVGMSKEEKMKIIRHIRKYMK-DGGILLVRS 240 (284)
Q Consensus 203 fD~V~~~~~~~~~~~~k~~~l~~~~~~L~-pGG~lv~~~ 240 (284)
+|+|+..... ...+....+.++ ++|+++..+
T Consensus 254 ~d~vid~~g~-------~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 254 VDYAFEVIGS-------ADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred CcEEEECCCC-------HHHHHHHHHHhccCCCEEEEEe
Confidence 9999976542 356777888999 999998765
No 306
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.00 E-value=0.0082 Score=54.16 Aligned_cols=98 Identities=21% Similarity=0.237 Sum_probs=66.8
Q ss_pred CeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhh-------ccCCC--------CCeEEEEcchhhh
Q 039591 132 KKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVAT-------DFEFE--------KRMKFLTGDILQV 196 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~-------~~~l~--------~~v~~~~~D~~~~ 196 (284)
.+|..||+|.+|........ ..|.+|+.+|++++.++.+++.+++ .+.+. .++++ ..|..
T Consensus 4 ~kI~VIG~G~mG~~ia~~la--~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~-- 78 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCA--VAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD-- 78 (282)
T ss_pred cEEEEEccCHHHHHHHHHHH--HCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH--
Confidence 47999999998877554333 2577999999999999876643221 12111 13332 33432
Q ss_pred hccCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEE
Q 039591 197 KEKLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLV 238 (284)
Q Consensus 197 ~~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~ 238 (284)
.++..|+|+.+... ..+-|.++++++.+.++|+.+|+.
T Consensus 79 --~~~~aDlVi~av~e--~~~~k~~~~~~l~~~~~~~~il~s 116 (282)
T PRK05808 79 --DLKDADLVIEAATE--NMDLKKKIFAQLDEIAKPEAILAT 116 (282)
T ss_pred --HhccCCeeeecccc--cHHHHHHHHHHHHhhCCCCcEEEE
Confidence 23679999998653 235678999999999999988843
No 307
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.97 E-value=0.0023 Score=56.72 Aligned_cols=85 Identities=20% Similarity=0.317 Sum_probs=60.5
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.....|.|+||| -+- +|. .....|+.+|+- + .+=+++..|+.+.+.+.+..|+++.
T Consensus 179 ~~~~vIaD~GCG-Eak----iA~--~~~~kV~SfDL~-----------a------~~~~V~~cDm~~vPl~d~svDvaV~ 234 (325)
T KOG3045|consen 179 PKNIVIADFGCG-EAK----IAS--SERHKVHSFDLV-----------A------VNERVIACDMRNVPLEDESVDVAVF 234 (325)
T ss_pred cCceEEEecccc-hhh----hhh--ccccceeeeeee-----------c------CCCceeeccccCCcCccCcccEEEe
Confidence 344578999999 443 442 134679999972 1 1234567888887666689999887
Q ss_pred cC-cCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AA-LVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~-~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+. +-| .+-..+++++.+.|++||.+.+-.
T Consensus 235 CLSLMg---tn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 235 CLSLMG---TNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred eHhhhc---ccHHHHHHHHHHHhccCceEEEEe
Confidence 64 323 455899999999999999998754
No 308
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=96.97 E-value=0.008 Score=55.26 Aligned_cols=99 Identities=13% Similarity=0.088 Sum_probs=69.2
Q ss_pred cCCCCeEEEecC-CCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEc-chhhhhccC--CCc
Q 039591 128 VVQPKKVAFVGS-GPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTG-DILQVKEKL--GEY 203 (284)
Q Consensus 128 ~~~~~~VL~iGs-Gp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~-D~~~~~~~l--~~f 203 (284)
..++++||..|+ |++|..++.+|+ ..|.+|++++.+++..+.+++.. | .+..+..... |..+..... +++
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk--~~G~~Vi~~~~~~~~~~~~~~~l---G-a~~vi~~~~~~~~~~~i~~~~~~gv 222 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAK--LKGCYVVGSAGSDEKVDLLKNKL---G-FDDAFNYKEEPDLDAALKRYFPNGI 222 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHHhc---C-CceeEEcCCcccHHHHHHHhCCCCc
Confidence 478899999997 889999999998 46789999999999888887632 3 1122222222 332221111 579
Q ss_pred cEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 204 DCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 204 D~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+|+.... ...+..+.+.|+++|+++..+
T Consensus 223 d~v~d~~g--------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 223 DIYFDNVG--------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred EEEEECCC--------HHHHHHHHHHhccCcEEEEec
Confidence 99997543 245678889999999998765
No 309
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.97 E-value=0.0055 Score=55.95 Aligned_cols=92 Identities=13% Similarity=0.145 Sum_probs=62.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
..+++|+.+|.|..|...+..++ ..|++|+.+|.+++..+.++.. | .+++. ..+....+..+|+||.
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~--~~Ga~V~v~~r~~~~~~~~~~~----G-----~~~~~--~~~l~~~l~~aDiVI~ 216 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLK--ALGANVTVGARKSAHLARITEM----G-----LSPFH--LSELAEEVGKIDIIFN 216 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHH--HCCCEEEEEECCHHHHHHHHHc----C-----Ceeec--HHHHHHHhCCCCEEEE
Confidence 46899999999999998888777 3578999999998876665532 3 12221 1122223368999998
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
..+. .-+-+...+.|+||++++-..
T Consensus 217 t~p~-------~~i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 217 TIPA-------LVLTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred CCCh-------hhhhHHHHHcCCCCcEEEEEc
Confidence 7643 123455667899998777433
No 310
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=96.95 E-value=0.0072 Score=52.78 Aligned_cols=98 Identities=15% Similarity=0.176 Sum_probs=67.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhh--hccCCCccEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQV--KEKLGEYDCI 206 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~--~~~l~~fD~V 206 (284)
.++++||..|+|++|..++.+++ ..|.+|++++.+++..+.+++. + ....+.....+.... ....+.+|+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~--~~g~~v~~~~~~~~~~~~~~~~----g-~~~~~~~~~~~~~~~~~~~~~~~~d~v 205 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAK--AAGARVIVTDRSDEKLELAKEL----G-ADHVIDYKEEDLEEELRLTGGGGADVV 205 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--HcCCeEEEEcCCHHHHHHHHHh----C-CceeccCCcCCHHHHHHHhcCCCCCEE
Confidence 67889999999977888888887 3568999999999988887654 2 111122211222111 1112679999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+.+... ...+..+.+.|+++|.++..+
T Consensus 206 i~~~~~-------~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 206 IDAVGG-------PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EECCCC-------HHHHHHHHHhcccCCEEEEEc
Confidence 977553 256777888999999999766
No 311
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.94 E-value=0.013 Score=54.54 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=82.0
Q ss_pred CCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC-CCccEEEEc
Q 039591 131 PKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL-GEYDCIFLA 209 (284)
Q Consensus 131 ~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l-~~fD~V~~~ 209 (284)
+.+|+|-=|| +|+=+|..|. ..+..+|+.=|+||.+++..++|++... ......+..|+..++... ..||+|=+|
T Consensus 53 ~~~v~Dalsa-tGiRgIRya~-E~~~~~v~lNDisp~Avelik~Nv~~N~--~~~~~v~n~DAN~lm~~~~~~fd~IDiD 128 (380)
T COG1867 53 PKRVLDALSA-TGIRGIRYAV-ETGVVKVVLNDISPKAVELIKENVRLNS--GEDAEVINKDANALLHELHRAFDVIDID 128 (380)
T ss_pred CeEEeecccc-cchhHhhhhh-hcCccEEEEccCCHHHHHHHHHHHHhcC--cccceeecchHHHHHHhcCCCccEEecC
Confidence 7899999999 9999999998 4555589999999999999999998742 245555668988776554 789999888
Q ss_pred CcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 210 ALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 210 ~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.. |.+ ..+++.+.+.++.||+|.+..
T Consensus 129 PF-GSP----aPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 129 PF-GSP----APFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CC-CCC----chHHHHHHHHhhcCCEEEEEe
Confidence 64 333 678999999999999999865
No 312
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=96.90 E-value=0.025 Score=48.83 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=72.6
Q ss_pred CCCCeEEEecCCCCh--HHHHHHHhh-cCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcch-hhhhccCCCcc
Q 039591 129 VQPKKVAFVGSGPMP--LTSIVMAKN-HLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDI-LQVKEKLGEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G--~~ai~la~~-~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~-~~~~~~l~~fD 204 (284)
.+.+.++++.|+ .+ .|++.||.+ +..|+++++|-.+++.....++.....+ +.+.++|+.++. .+....+...|
T Consensus 40 ~nAkliVe~~s~-g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~-~~~~vEfvvg~~~e~~~~~~~~iD 117 (218)
T PF07279_consen 40 WNAKLIVEAWSS-GGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG-LSDVVEFVVGEAPEEVMPGLKGID 117 (218)
T ss_pred ccceEEEEEecC-CCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc-ccccceEEecCCHHHHHhhccCCC
Confidence 456788888665 32 244444322 3589999999999998877777776655 567789999985 45666778999
Q ss_pred EEEEcCcCCCCHHHHH-HHHHHHHhccccCcEEEEEec
Q 039591 205 CIFLAALVGMSKEEKM-KIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~-~~l~~~~~~L~pGG~lv~~~~ 241 (284)
+++++.-. ++-. ++|+. .+.=+.|++++..++
T Consensus 118 F~vVDc~~----~d~~~~vl~~-~~~~~~GaVVV~~Na 150 (218)
T PF07279_consen 118 FVVVDCKR----EDFAARVLRA-AKLSPRGAVVVCYNA 150 (218)
T ss_pred EEEEeCCc----hhHHHHHHHH-hccCCCceEEEEecc
Confidence 99999864 2334 66664 444455666666664
No 313
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.89 E-value=0.0042 Score=59.37 Aligned_cols=89 Identities=17% Similarity=0.045 Sum_probs=64.3
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
..+++|+.+|+|++|......++ ..|.+|+.+|+++.....|... | .++ .+..+. +..+|+|+.
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr--~~Ga~ViV~d~dp~ra~~A~~~----G-----~~v--~~l~ea---l~~aDVVI~ 273 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLR--GLGARVIVTEVDPICALQAAMD----G-----FRV--MTMEEA---AELGDIFVT 273 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--hCCCEEEEEcCCchhhHHHHhc----C-----CEe--cCHHHH---HhCCCEEEE
Confidence 47899999999999998888887 3578999999999876544321 2 121 133322 257999998
Q ss_pred cCcCCCCHHHHHHHHH-HHHhccccCcEEEEEe
Q 039591 209 AALVGMSKEEKMKIIR-HIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~-~~~~~L~pGG~lv~~~ 240 (284)
+... ..++. ...+.||+|++++..+
T Consensus 274 aTG~-------~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 274 ATGN-------KDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred CCCC-------HHHHHHHHHhcCCCCCEEEEcC
Confidence 7643 34555 6778999999988765
No 314
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.86 E-value=0.0063 Score=51.49 Aligned_cols=129 Identities=15% Similarity=0.184 Sum_probs=81.3
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEc-chhhhh------ccC-
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTG-DILQVK------EKL- 200 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~-D~~~~~------~~l- 200 (284)
.++++|||+|+-|...+-...-+ ..|.+.|.+||+- .+. + .+.++++++ |+.+.. +.+
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr-~~p~g~v~gVDll---------h~~--p--~~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQR-VNPNGMVLGVDLL---------HIE--P--PEGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHh-hCCCceEEEEeee---------ecc--C--CCCcccccccccCCHHHHHHHHHhCC
Confidence 78899999999985554433333 5588999999982 222 2 255777777 666521 122
Q ss_pred -CCccEEEEcCcC---CCCHHHHHHHHH-------HHHhccccCcEEEEEeccchhhhcCCCCCCCCC-CCcEEEEEEcC
Q 039591 201 -GEYDCIFLAALV---GMSKEEKMKIIR-------HIRKYMKDGGILLVRSAKGARAFLYPVVERHDL-LDFEVLSIFHP 268 (284)
Q Consensus 201 -~~fD~V~~~~~~---~~~~~~k~~~l~-------~~~~~L~pGG~lv~~~~~g~~~~lyp~v~~~~l-~gf~~~~~~~p 268 (284)
...|+|+++... |....|....++ -....++|+|.++.....|-..-.+ .. ++ .-|+-+.++.|
T Consensus 134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l---~r-~l~~~f~~Vk~vKP 209 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALL---QR-RLQAVFTNVKKVKP 209 (232)
T ss_pred CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHH---HH-HHHHHhhhcEeeCC
Confidence 678999997432 333344444443 3456788999999887555321110 11 22 56888888888
Q ss_pred CCceeeE
Q 039591 269 IDEVINS 275 (284)
Q Consensus 269 ~~~v~ns 275 (284)
....-+|
T Consensus 210 ~Asr~eS 216 (232)
T KOG4589|consen 210 DASRDES 216 (232)
T ss_pred ccccccc
Confidence 7766666
No 315
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.84 E-value=0.018 Score=52.27 Aligned_cols=97 Identities=21% Similarity=0.195 Sum_probs=66.2
Q ss_pred CeEEEecCCCChHHHHH-HHhhcCCCcEEEEEeCCHHHHHHHHHHHhhc-------cCCC--------CCeEEEEcchhh
Q 039591 132 KKVAFVGSGPMPLTSIV-MAKNHLKATHFDNFDIDEAANNVARRIVATD-------FEFE--------KRMKFLTGDILQ 195 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~-la~~~~~~~~V~~vDis~~~~~~A~~~~~~~-------~~l~--------~~v~~~~~D~~~ 195 (284)
.+|.+||+|.+|..... +++ .|..|+.+|.+++.++.+.+.+... +.+. .++++ ..|..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~---~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~- 79 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCAL---AGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLE- 79 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHH-
Confidence 58999999988876443 443 6789999999999998865433211 1111 22343 23332
Q ss_pred hhccCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEE
Q 039591 196 VKEKLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLV 238 (284)
Q Consensus 196 ~~~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~ 238 (284)
.+...|+|+.+.+. ...-|..+++.+.+.++|+.+++.
T Consensus 80 ---~~~~aD~Vieavpe--~~~~k~~~~~~l~~~~~~~~ii~s 117 (292)
T PRK07530 80 ---DLADCDLVIEAATE--DETVKRKIFAQLCPVLKPEAILAT 117 (292)
T ss_pred ---HhcCCCEEEEcCcC--CHHHHHHHHHHHHhhCCCCcEEEE
Confidence 23679999998654 234578999999999999987764
No 316
>PHA01634 hypothetical protein
Probab=96.84 E-value=0.0054 Score=48.66 Aligned_cols=74 Identities=12% Similarity=0.165 Sum_probs=53.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
-.+++|+|||++ .|-+++.++. .....|+++|.+|...+..+++.+.....++.+- .+ +.....+.||+..+
T Consensus 27 vk~KtV~dIGA~-iGdSaiYF~l--~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~--~~---eW~~~Y~~~Di~~i 98 (156)
T PHA01634 27 VYQRTIQIVGAD-CGSSALYFLL--RGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVM--KG---EWNGEYEDVDIFVM 98 (156)
T ss_pred ecCCEEEEecCC-ccchhhHHhh--cCccEEEEeccCHHHHHHHHHHhhhheeeeceee--cc---cccccCCCcceEEE
Confidence 568999999999 9999999986 3445799999999999999998775332111111 11 22334588998877
Q ss_pred cC
Q 039591 209 AA 210 (284)
Q Consensus 209 ~~ 210 (284)
+.
T Consensus 99 DC 100 (156)
T PHA01634 99 DC 100 (156)
T ss_pred Ec
Confidence 63
No 317
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.82 E-value=0.0049 Score=52.35 Aligned_cols=102 Identities=21% Similarity=0.288 Sum_probs=61.6
Q ss_pred CeEEEecCCCChHHH-HHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhcc--C--------C-CCCeEEEEcchhhhhcc
Q 039591 132 KKVAFVGSGPMPLTS-IVMAKNHLKATHFDNFDIDEAANNVARRIVATDF--E--------F-EKRMKFLTGDILQVKEK 199 (284)
Q Consensus 132 ~~VL~iGsGp~G~~a-i~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~--~--------l-~~~v~~~~~D~~~~~~~ 199 (284)
++|..+|.|=.|+.. ..+|+ .|.+|+++|+|++.++..++-..-.. + . ..+..+ ..|..+.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~---~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~-t~~~~~a--- 73 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAE---KGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA-TTDIEEA--- 73 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHH---TTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE-ESEHHHH---
T ss_pred CEEEEECCCcchHHHHHHHHh---CCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh-hhhhhhh---
Confidence 478999999999774 45666 78999999999999887664211000 0 0 134444 3444332
Q ss_pred CCCccEEEEcCcCCC------CHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 200 LGEYDCIFLAALVGM------SKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 200 l~~fD~V~~~~~~~~------~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
....|++|++.+... +...-..+++.+.+.+++|.++++++
T Consensus 74 i~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~S 120 (185)
T PF03721_consen 74 IKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIES 120 (185)
T ss_dssp HHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred hhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEcc
Confidence 246899998754311 11335788999999999999999988
No 318
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.80 E-value=0.0075 Score=54.62 Aligned_cols=100 Identities=16% Similarity=0.152 Sum_probs=67.6
Q ss_pred CeEEEecCCCChHHHHH-HHhhcCCCcEEEEEeCCHHHHHHHHHHHhhc-------cCCC--------CCeEEEEcchhh
Q 039591 132 KKVAFVGSGPMPLTSIV-MAKNHLKATHFDNFDIDEAANNVARRIVATD-------FEFE--------KRMKFLTGDILQ 195 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~-la~~~~~~~~V~~vDis~~~~~~A~~~~~~~-------~~l~--------~~v~~~~~D~~~ 195 (284)
++|..||+|.+|..... +++ .|.+|+.+|.+++.++.+++..... +.+. .++++ +.|..+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~---~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~ 77 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAV---SGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKA 77 (288)
T ss_pred cEEEEECccHHHHHHHHHHHh---CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHH
Confidence 47999999988876433 343 5789999999999999987643211 1000 12332 233322
Q ss_pred hhccCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 196 VKEKLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 196 ~~~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.....|+|+.+... ...-|..++.++.+.++|+.+++...
T Consensus 78 ---~~~~aD~Vi~avpe--~~~~k~~~~~~l~~~~~~~~il~~~t 117 (288)
T PRK09260 78 ---AVADADLVIEAVPE--KLELKKAVFETADAHAPAECYIATNT 117 (288)
T ss_pred ---hhcCCCEEEEeccC--CHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 23678999998654 23457889999999999998776654
No 319
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.79 E-value=0.015 Score=52.61 Aligned_cols=101 Identities=20% Similarity=0.239 Sum_probs=68.2
Q ss_pred CeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhc-------cCC---------CCCeEEEEcchhh
Q 039591 132 KKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATD-------FEF---------EKRMKFLTGDILQ 195 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~-------~~l---------~~~v~~~~~D~~~ 195 (284)
.+|..||+|.+|........ ..|.+|+.+|.+++.++.+++.+... +.+ ..++++ +.|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la--~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTA--FHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHH--hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence 58999999988865433332 26789999999999999887654211 001 023343 344432
Q ss_pred hhccCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 196 VKEKLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 196 ~~~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.+...|+|+.+... ..+-|..+++++.+.++++.+|+..+
T Consensus 81 ---a~~~aDlVieavpe--~~~~k~~~~~~l~~~~~~~~ii~snt 120 (287)
T PRK08293 81 ---AVKDADLVIEAVPE--DPEIKGDFYEELAKVAPEKTIFATNS 120 (287)
T ss_pred ---HhcCCCEEEEeccC--CHHHHHHHHHHHHhhCCCCCEEEECc
Confidence 23678999998653 23568999999999999888775543
No 320
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=96.79 E-value=0.01 Score=54.53 Aligned_cols=98 Identities=18% Similarity=0.242 Sum_probs=69.1
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCC-cEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc---cCCCcc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKA-THFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE---KLGEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~-~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~---~l~~fD 204 (284)
.++.+||..|+|++|..++.+|+ . .| .+|++++.++...+.+++. | .+.-+.....+...... .-..+|
T Consensus 165 ~~g~~vlI~g~g~~g~~~~~~a~-~-~G~~~v~~~~~~~~~~~~~~~~----g-~~~~v~~~~~~~~~~i~~~~~~~~~d 237 (345)
T cd08286 165 KPGDTVAIVGAGPVGLAALLTAQ-L-YSPSKIIMVDLDDNRLEVAKKL----G-ATHTVNSAKGDAIEQVLELTDGRGVD 237 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-H-cCCCeEEEEcCCHHHHHHHHHh----C-CCceeccccccHHHHHHHHhCCCCCC
Confidence 67889999999999999999998 3 45 7899999999998887764 3 22223333333322111 114699
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+|+.+... ...+..+.+.|+++|+++..+
T Consensus 238 ~vld~~g~-------~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 238 VVIEAVGI-------PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred EEEECCCC-------HHHHHHHHHhccCCcEEEEec
Confidence 99976532 345788889999999998755
No 321
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.78 E-value=0.0034 Score=55.16 Aligned_cols=82 Identities=13% Similarity=0.261 Sum_probs=51.3
Q ss_pred ccCCC--CeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhc---cC----CCCCeEEEEcchhhhh
Q 039591 127 GVVQP--KKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATD---FE----FEKRMKFLTGDILQVK 197 (284)
Q Consensus 127 ~~~~~--~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~---~~----l~~~v~~~~~D~~~~~ 197 (284)
+.+++ .+|||.=+| +|-.++.+|. -|++|+++|.||-...+.+.-++.. .. ...+|+++.+|..++.
T Consensus 70 Glk~~~~~~VLDaTaG-LG~Da~vlA~---~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L 145 (234)
T PF04445_consen 70 GLKPGMRPSVLDATAG-LGRDAFVLAS---LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYL 145 (234)
T ss_dssp T-BTTB---EEETT-T-TSHHHHHHHH---HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHC
T ss_pred CCCCCCCCEEEECCCc-chHHHHHHHc---cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHH
Confidence 33444 499999999 9999999997 3789999999999888877544321 11 1148999999998875
Q ss_pred cc-CCCccEEEEcCcC
Q 039591 198 EK-LGEYDCIFLAALV 212 (284)
Q Consensus 198 ~~-l~~fD~V~~~~~~ 212 (284)
.. ...||+|+++...
T Consensus 146 ~~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 146 RQPDNSFDVVYFDPMF 161 (234)
T ss_dssp CCHSS--SEEEE--S-
T ss_pred hhcCCCCCEEEECCCC
Confidence 42 2789999999765
No 322
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=96.77 E-value=0.011 Score=54.90 Aligned_cols=98 Identities=15% Similarity=0.099 Sum_probs=67.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchh----hhh--ccCC
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDIL----QVK--EKLG 201 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~----~~~--~~l~ 201 (284)
.++++||..|+|++|..++.+|+ . .|. +|++++.+++..+.++++ | ...-+.....+.. ... ..-.
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak-~-~G~~~v~~~~~~~~~~~~~~~~----g-~~~vi~~~~~~~~~~~~~i~~~~~~~ 248 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAK-L-AGARRVIVIDGSPERLELAREF----G-ADATIDIDELPDPQRRAIVRDITGGR 248 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-H-cCCCeEEEEcCCHHHHHHHHHc----C-CCeEEcCcccccHHHHHHHHHHhCCC
Confidence 47889999999999999999998 3 567 899999999988877653 3 1111221111111 111 1124
Q ss_pred CccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 202 EYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 202 ~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.+|+|+..... ...+....+.|+++|+++..+
T Consensus 249 ~~d~vid~~g~-------~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 249 GADVVIEASGH-------PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CCcEEEECCCC-------hHHHHHHHHHhccCCEEEEEc
Confidence 69999987543 345677889999999998765
No 323
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.72 E-value=0.014 Score=55.94 Aligned_cols=106 Identities=13% Similarity=0.154 Sum_probs=73.3
Q ss_pred CCCC-eEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 129 VQPK-KVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 129 ~~~~-~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
.+-. +++.+|||-.. .+..+-+ ..-..|+++|+|+.+++.....-.+ . ...+.+...|......+.+.||+|+
T Consensus 46 ~p~~~~~l~lGCGNS~-l~e~ly~--~G~~dI~~iD~S~V~V~~m~~~~~~-~--~~~~~~~~~d~~~l~fedESFdiVI 119 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSE-LSEHLYK--NGFEDITNIDSSSVVVAAMQVRNAK-E--RPEMQMVEMDMDQLVFEDESFDIVI 119 (482)
T ss_pred chhhceeEeecCCCCH-HHHHHHh--cCCCCceeccccHHHHHHHHhcccc-C--CcceEEEEecchhccCCCcceeEEE
Confidence 4445 99999999433 2333332 2334699999999999998876433 1 2568999999887666668899998
Q ss_pred EcCcC-----C----CCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALV-----G----MSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~-----~----~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.-+.. + ++..-+...+.++.+.++|||+++..+
T Consensus 120 dkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 120 DKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred ecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 63322 1 112345678899999999999976544
No 324
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=96.71 E-value=0.0081 Score=56.00 Aligned_cols=98 Identities=16% Similarity=0.180 Sum_probs=68.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc--CCCccE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK--LGEYDC 205 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~--l~~fD~ 205 (284)
.++++||..|+|++|..++.+|+ . .|. .|+++|.+++..+.+++. + ...-+.....+..+.... -..+|+
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~-~-~G~~~v~~~~~~~~k~~~~~~~----g-~~~~i~~~~~~~~~~v~~~~~~~~d~ 257 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAK-I-AGCTTIIAVDIVDSRLELAKEL----G-ATHVINPKEEDLVAAIREITGGGVDY 257 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-H-cCCCeEEEEeCCHHHHHHHHHc----C-CcEEecCCCcCHHHHHHHHhCCCCcE
Confidence 67889999999999999999998 3 456 699999999998887764 2 111112111222221111 256999
Q ss_pred EEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+.+... ...+..+.+.++++|+++..+
T Consensus 258 vld~~g~-------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 258 ALDTTGV-------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred EEECCCC-------cHHHHHHHHHhccCCEEEEeC
Confidence 9987643 346778899999999999765
No 325
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.68 E-value=0.013 Score=53.16 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=65.0
Q ss_pred CeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhc----------cCC--------CCCeEEEEcch
Q 039591 132 KKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATD----------FEF--------EKRMKFLTGDI 193 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~----------~~l--------~~~v~~~~~D~ 193 (284)
++|..||+|.+|........ ..|.+|+.+|.+++.++.+++.+.+. +.. ..++.+ ..|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la--~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFA--RTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHH--hcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCH
Confidence 58999999999976443332 26789999999999998876543220 100 012222 1222
Q ss_pred hhhhccCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEE
Q 039591 194 LQVKEKLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILL 237 (284)
Q Consensus 194 ~~~~~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv 237 (284)
. .+...|+|+.+... ..+.|..+++++.+.++|+.+++
T Consensus 81 ~----~~~~aDlVieav~e--~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 81 E----SLSDADFIVEAVPE--KLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred H----HhCCCCEEEEcCcC--cHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 23678999998654 23458999999999999988765
No 326
>PLN02494 adenosylhomocysteinase
Probab=96.68 E-value=0.011 Score=57.05 Aligned_cols=90 Identities=17% Similarity=0.070 Sum_probs=64.6
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
..+++|+.+|+|++|......++ ..|++|+.+|.|+.....|... | ..+. +..+. +...|+|+.
T Consensus 252 LaGKtVvViGyG~IGr~vA~~ak--a~Ga~VIV~e~dp~r~~eA~~~----G-----~~vv--~leEa---l~~ADVVI~ 315 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMK--AAGARVIVTEIDPICALQALME----G-----YQVL--TLEDV---VSEADIFVT 315 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCchhhHHHHhc----C-----Ceec--cHHHH---HhhCCEEEE
Confidence 57899999999999999888887 3578999999999876555432 2 1121 33222 257899998
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+.... .-+.....+.||+||+|+..+
T Consensus 316 tTGt~------~vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 316 TTGNK------DIIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred CCCCc------cchHHHHHhcCCCCCEEEEcC
Confidence 65431 223477788999999999765
No 327
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.68 E-value=0.0082 Score=51.42 Aligned_cols=107 Identities=14% Similarity=0.200 Sum_probs=72.7
Q ss_pred CeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccC-----CCCCeEEEEcchhhhhccC---CCc
Q 039591 132 KKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFE-----FEKRMKFLTGDILQVKEKL---GEY 203 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~-----l~~~v~~~~~D~~~~~~~l---~~f 203 (284)
-.++||||| .|-..+.|+. ..|+.-+.|+||--..-+..++.++++.. .-.++.+...+++.....+ ++-
T Consensus 62 vefaDIGCG-yGGLlv~Lsp-~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 62 VEFADIGCG-YGGLLMKLAP-KFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ceEEeeccC-ccchhhhccc-cCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 467999999 8888889998 78999999999999999998888776531 1235667777776554333 333
Q ss_pred cEEEEcCcCCCCHHHH-------HHHHHHHHhccccCcEEEEEe
Q 039591 204 DCIFLAALVGMSKEEK-------MKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 204 D~V~~~~~~~~~~~~k-------~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+-.|..-.-.+....| ..++.+.+-+|++||.+...+
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 3333221111111111 456777888999999998755
No 328
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=96.67 E-value=0.014 Score=53.47 Aligned_cols=98 Identities=17% Similarity=0.309 Sum_probs=66.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
.++++||..|+|.+|..++.+|+ . .|. ++++++.+++..+.+++. + ...-+.....+..+.....+.+|+|+
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak-~-~G~~~v~~~~~s~~~~~~~~~~----g-~~~vi~~~~~~~~~~~~~~~~vd~vl 236 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAAR-R-AGAAEIVATDLADAPLAVARAM----G-ADETVNLARDPLAAYAADKGDFDVVF 236 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-H-cCCcEEEEECCCHHHHHHHHHc----C-CCEEEcCCchhhhhhhccCCCccEEE
Confidence 47889999999988989988998 3 466 799999999988876654 2 11111111111222111124599999
Q ss_pred EcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
..... ...++.+.+.|+++|+++.-+
T Consensus 237 d~~g~-------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 237 EASGA-------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred ECCCC-------HHHHHHHHHHHhcCCEEEEEe
Confidence 87653 345778889999999998654
No 329
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=96.67 E-value=0.011 Score=54.32 Aligned_cols=98 Identities=17% Similarity=0.168 Sum_probs=68.3
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcE-EEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc---cCCCcc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATH-FDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE---KLGEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~-V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~---~l~~fD 204 (284)
.++.+|+..|+|++|..++.+|+ ..|.+ |++++.++...+.++++ + ...-+.....+..+... .-+.+|
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~--~~G~~~v~~~~~~~~~~~~~~~~----g-~~~~v~~~~~~~~~~l~~~~~~~~~d 232 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAK--ASGAYPVIVSDPNEYRLELAKKM----G-ATYVVNPFKEDVVKEVADLTDGEGVD 232 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--HcCCcEEEEECCCHHHHHHHHHh----C-CcEEEcccccCHHHHHHHhcCCCCCC
Confidence 57889999999999999999998 35675 88889999888887765 3 11112222233322221 125699
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+|+.+... ...+..+.+.|+++|+++..+
T Consensus 233 ~vld~~g~-------~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 233 VFLEMSGA-------PKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred EEEECCCC-------HHHHHHHHHhhcCCCEEEEEc
Confidence 99987543 346778889999999998765
No 330
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.66 E-value=0.0073 Score=52.99 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=75.4
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC----CCc
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL----GEY 203 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l----~~f 203 (284)
.+++.+||.+|++ .|.|.-..+....|...|.++|.|+..=...-.++++ ..+|--+..|+... ... ...
T Consensus 154 ikpGsKVLYLGAa-sGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk----RtNiiPIiEDArhP-~KYRmlVgmV 227 (317)
T KOG1596|consen 154 IKPGSKVLYLGAA-SGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK----RTNIIPIIEDARHP-AKYRMLVGMV 227 (317)
T ss_pred ecCCceEEEeecc-CCceeehhhcccCCCceEEEEEecccchHHHHHHhhc----cCCceeeeccCCCc-hheeeeeeeE
Confidence 4899999999999 9998877777556888999999998655444444333 14677777888642 211 678
Q ss_pred cEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 204 DCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 204 D~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+||.+..- +++..-+.-++...||+||.+++.-
T Consensus 228 DvIFaDvaq---pdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 228 DVIFADVAQ---PDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred EEEeccCCC---chhhhhhhhhhhhhhccCCeEEEEE
Confidence 999988643 2333455667788999999998754
No 331
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.63 E-value=0.0069 Score=55.42 Aligned_cols=81 Identities=17% Similarity=0.163 Sum_probs=52.3
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc------cC
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE------KL 200 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~------~l 200 (284)
...++...+|.=-|-.|-+...|.+ .++++++++|.||++++.|++.++.. .+++.++.++..++.. ..
T Consensus 17 ~~~~~g~~vD~T~G~GGHS~aiL~~--~~~~~li~~DrD~~a~~~a~~~l~~~---~~r~~~~~~~F~~l~~~l~~~~~~ 91 (310)
T PF01795_consen 17 NPKPGGIYVDCTFGGGGHSKAILEK--LPNGRLIGIDRDPEALERAKERLKKF---DDRFIFIHGNFSNLDEYLKELNGI 91 (310)
T ss_dssp T--TT-EEEETT-TTSHHHHHHHHT---TT-EEEEEES-HHHHHHHHCCTCCC---CTTEEEEES-GGGHHHHHHHTTTT
T ss_pred CcCCCceEEeecCCcHHHHHHHHHh--CCCCeEEEecCCHHHHHHHHHHHhhc---cceEEEEeccHHHHHHHHHHccCC
Confidence 3467778899755522555555544 67799999999999999999887653 4899999999877532 22
Q ss_pred CCccEEEEcCcC
Q 039591 201 GEYDCIFLAALV 212 (284)
Q Consensus 201 ~~fD~V~~~~~~ 212 (284)
..+|.|+.+.++
T Consensus 92 ~~~dgiL~DLGv 103 (310)
T PF01795_consen 92 NKVDGILFDLGV 103 (310)
T ss_dssp S-EEEEEEE-S-
T ss_pred CccCEEEEcccc
Confidence 579999986443
No 332
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=96.62 E-value=0.0089 Score=54.56 Aligned_cols=96 Identities=16% Similarity=0.071 Sum_probs=63.8
Q ss_pred CCCeEEEe--cCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC---CCcc
Q 039591 130 QPKKVAFV--GSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL---GEYD 204 (284)
Q Consensus 130 ~~~~VL~i--GsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l---~~fD 204 (284)
.+.+++.+ |+|++|..++.+|+ ..|.+|++++.+++..+.++++ | .+.-+.....+..+....+ ..+|
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~--~~G~~vi~~~~~~~~~~~~~~~----g-~~~~i~~~~~~~~~~v~~~~~~~~~d 214 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCK--ADGIKVINIVRRKEQVDLLKKI----G-AEYVLNSSDPDFLEDLKELIAKLNAT 214 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHHc----C-CcEEEECCCccHHHHHHHHhCCCCCc
Confidence 45566664 88999999999998 3678999999999998888764 3 1122222223333222111 4699
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+|+.+... .......+.+++||+++..+
T Consensus 215 ~vid~~g~--------~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 215 IFFDAVGG--------GLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred EEEECCCc--------HHHHHHHHhhCCCCEEEEEE
Confidence 99976542 12345677899999998765
No 333
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=96.60 E-value=0.012 Score=53.99 Aligned_cols=98 Identities=18% Similarity=0.227 Sum_probs=67.2
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCC-cEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc---CCCcc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKA-THFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK---LGEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~-~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~---l~~fD 204 (284)
.++.+||..|+|++|..++.+|+ . .| ..+++++.+++..+.++++ + ....+.....+..+.... -+.+|
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak-~-~g~~~v~~~~~~~~~~~~~~~~----g-~~~vi~~~~~~~~~~i~~~~~~~~~d 238 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGAR-L-LGAARIIAVDSNPERLDLAKEA----G-ATDIINPKNGDIVEQILELTGGRGVD 238 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-H-cCCCEEEEEeCCHHHHHHHHHh----C-CcEEEcCCcchHHHHHHHHcCCCCCc
Confidence 67889999999988999999998 3 45 4789999999888887765 2 112222223333222111 15699
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+|+.+... ...+....+.|+++|+++..+
T Consensus 239 ~vld~~g~-------~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 239 CVIEAVGF-------EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred EEEEccCC-------HHHHHHHHHHhhcCCEEEEEc
Confidence 99976432 246778889999999998654
No 334
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=96.59 E-value=0.012 Score=55.22 Aligned_cols=100 Identities=19% Similarity=0.141 Sum_probs=67.6
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEc---chhhhhccC---
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTG---DILQVKEKL--- 200 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~---D~~~~~~~l--- 200 (284)
..++++||..|+|++|..++.+|+ . .|. +|++++.+++..+.+++. | ...-+..... +..+...++
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~-~-~G~~~vi~~~~~~~~~~~~~~~----g-~~~~v~~~~~~~~~~~~~v~~~~~g 273 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAK-A-AGASKVIAFEISEERRNLAKEM----G-ADYVFNPTKMRDCLSGEKVMEVTKG 273 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH-H-cCCCEEEEEcCCHHHHHHHHHc----C-CCEEEcccccccccHHHHHHHhcCC
Confidence 367889999999999999999998 3 556 799999999987777764 3 2121222211 221111111
Q ss_pred CCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 201 GEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 201 ~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
..+|+|+..... . ...+.++.+.|+++|+++..+
T Consensus 274 ~gvDvvld~~g~--~----~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 274 WGADIQVEAAGA--P----PATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CCCCEEEECCCC--c----HHHHHHHHHHHHcCCEEEEEC
Confidence 469999866331 1 346778888999999998765
No 335
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.58 E-value=0.0063 Score=56.14 Aligned_cols=108 Identities=14% Similarity=0.210 Sum_probs=67.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC---CCcc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL---GEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l---~~fD 204 (284)
-.+.+|||+|.|| |. +++.+...+|.- .++-++.||..-+....+.+... ...-.....|+..-..++ +.|+
T Consensus 112 fapqsiLDvG~GP-gt-gl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~--t~~td~r~s~vt~dRl~lp~ad~yt 187 (484)
T COG5459 112 FAPQSILDVGAGP-GT-GLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS--TEKTDWRASDVTEDRLSLPAADLYT 187 (484)
T ss_pred cCcchhhccCCCC-ch-hhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc--cccCCCCCCccchhccCCCccceee
Confidence 5678899999996 53 333333256665 47888999988887777655422 133344455554433334 4566
Q ss_pred EEEEcC-cCCC-CHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAA-LVGM-SKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~-~~~~-~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+++... +..+ ...+-...++.++..++|||.|++..
T Consensus 188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence 666433 3321 11233568999999999999999865
No 336
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.55 E-value=0.0031 Score=60.40 Aligned_cols=104 Identities=21% Similarity=0.158 Sum_probs=85.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc----CCCc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK----LGEY 203 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~----l~~f 203 (284)
.++-+|||.=|+ +|+-++..|+ +.++. +|++-|.++.+++.-+++++. +...+.++...+|+...... ...|
T Consensus 108 ~~~l~vLealsA-tGlrslRya~-El~~v~~v~AnD~~~~aV~~i~~Nv~~-N~v~~ive~~~~DA~~lM~~~~~~~~~F 184 (525)
T KOG1253|consen 108 EKSLRVLEALSA-TGLRSLRYAK-ELPGVRQVVANDLNENAVTSIQRNVEL-NGVEDIVEPHHSDANVLMYEHPMVAKFF 184 (525)
T ss_pred cCcchHHHHhhh-hhHHHHHHHH-HhcchhhhcccCCCHHHHHHHHhhhhh-cCchhhcccccchHHHHHHhcccccccc
Confidence 456688888888 9999999999 66765 699999999999999999876 44667888889998764422 2689
Q ss_pred cEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 204 DCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 204 D~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+|=+|..- .. ..+++.+.+.++.||+|.+..
T Consensus 185 DvIDLDPyG-s~----s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 185 DVIDLDPYG-SP----SPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ceEecCCCC-Cc----cHHHHHHHHHhhcCCEEEEEe
Confidence 999998743 33 689999999999999999876
No 337
>PLN02702 L-idonate 5-dehydrogenase
Probab=96.50 E-value=0.025 Score=52.58 Aligned_cols=99 Identities=18% Similarity=0.227 Sum_probs=68.3
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEE--EEcchhhhhc-----c
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKF--LTGDILQVKE-----K 199 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~--~~~D~~~~~~-----~ 199 (284)
..++.+|+..|+|++|..++.+|+ . .|. .|+++|.++...+.+++. | ....+.+ ...+..+... .
T Consensus 179 ~~~g~~vlI~g~g~vG~~~~~~a~-~-~G~~~v~~~~~~~~~~~~~~~~----g-~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (364)
T PLN02702 179 IGPETNVLVMGAGPIGLVTMLAAR-A-FGAPRIVIVDVDDERLSVAKQL----G-ADEIVLVSTNIEDVESEVEEIQKAM 251 (364)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH-H-cCCCEEEEECCCHHHHHHHHHh----C-CCEEEecCcccccHHHHHHHHhhhc
Confidence 367889999999999999999998 3 455 589999999998887765 2 1122222 1123322111 1
Q ss_pred CCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 200 LGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 200 l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
-+.+|+|+..... ...+....+.|+++|+++..+
T Consensus 252 ~~~~d~vid~~g~-------~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 252 GGGIDVSFDCVGF-------NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred CCCCCEEEECCCC-------HHHHHHHHHHHhcCCEEEEEc
Confidence 1469999987553 346788899999999988765
No 338
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.49 E-value=0.0015 Score=54.51 Aligned_cols=103 Identities=17% Similarity=0.083 Sum_probs=63.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEE-------------------
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFL------------------- 189 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~------------------- 189 (284)
.+|.+|+.+|+|..|..|..+++ .-|++++.+|..+...+..+.+... .+...
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~--~lGa~v~~~d~~~~~~~~~~~~~~~------~i~~~~~~~~~~~~~~~~~~~~~~ 89 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAK--GLGAEVVVPDERPERLRQLESLGAY------FIEVDYEDHLERKDFDKADYYEHP 89 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHH--HTT-EEEEEESSHHHHHHHHHTTTE------ESEETTTTTTTSB-CCHHHCHHHC
T ss_pred CCCeEEEEECCCHHHHHHHHHHh--HCCCEEEeccCCHHHHHhhhcccCc------eEEEcccccccccccchhhhhHHH
Confidence 56789999999999999999998 3589999999999988877665332 22221
Q ss_pred EcchhhhhccCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 190 TGDILQVKEKLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 190 ~~D~~~~~~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
...-..+...+..+|+|+.+...... ..+.-+-++..+.|+||..++=.+
T Consensus 90 ~~~~~~f~~~i~~~d~vI~~~~~~~~-~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 90 ESYESNFAEFIAPADIVIGNGLYWGK-RAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp CHHHHHHHHHHHH-SEEEEHHHBTTS-S---SBEHHHHHTSSTTEEEEETT
T ss_pred HHhHHHHHHHHhhCcEEeeecccCCC-CCCEEEEhHHhhccCCCceEEEEE
Confidence 11111111222678999987655222 122334455667899888777544
No 339
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=96.48 E-value=0.026 Score=50.03 Aligned_cols=95 Identities=19% Similarity=0.159 Sum_probs=67.2
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcE-EEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATH-FDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCI 206 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~-V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V 206 (284)
..++++|+..|+|++|..++.+|+ . .|.+ |++++.+++..+.+++.-. .+.+.....+. .....+|+|
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~-~-~g~~~vi~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~----~~~~~~d~v 163 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAK-A-AGAREVVGVDPDAARRELAEALGP-----ADPVAADTADE----IGGRGADVV 163 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH-H-cCCCcEEEECCCHHHHHHHHHcCC-----Cccccccchhh----hcCCCCCEE
Confidence 367899999999999999999998 3 4566 9999999999888776520 11111111111 122569999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+..... ...+....+.|+++|.++..+
T Consensus 164 l~~~~~-------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 164 IEASGS-------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEccCC-------hHHHHHHHHHhcCCcEEEEEe
Confidence 977554 346778888999999998765
No 340
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.46 E-value=0.024 Score=51.78 Aligned_cols=93 Identities=17% Similarity=0.161 Sum_probs=60.2
Q ss_pred CeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcCc
Q 039591 132 KKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAAL 211 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~~ 211 (284)
.+|..||+|.+|.+.....+......+|+++|.+++..+.+++. + ... . ...+..+ .+...|+|+++..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g-~~~--~-~~~~~~~---~~~~aDvViiavp 75 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----G-LGD--R-VTTSAAE---AVKGADLVILCVP 75 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----C-CCc--e-ecCCHHH---HhcCCCEEEECCC
Confidence 58999999988865444332111124899999999988776542 3 111 1 1223222 2367999999987
Q ss_pred CCCCHHHHHHHHHHHHhccccCcEEEEE
Q 039591 212 VGMSKEEKMKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 212 ~~~~~~~k~~~l~~~~~~L~pGG~lv~~ 239 (284)
. .....+++.+...+++|++++..
T Consensus 76 ~----~~~~~v~~~l~~~l~~~~iv~dv 99 (307)
T PRK07502 76 V----GASGAVAAEIAPHLKPGAIVTDV 99 (307)
T ss_pred H----HHHHHHHHHHHhhCCCCCEEEeC
Confidence 5 33467788888889999876543
No 341
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.46 E-value=0.013 Score=50.60 Aligned_cols=105 Identities=11% Similarity=0.140 Sum_probs=63.5
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
..+++||.||+|+.|..-+.... ..|++|+.++.+.. ...+++.+. .+++++.++... .++..+|+|+.
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll--~~ga~VtVvsp~~~--~~l~~l~~~-----~~i~~~~~~~~~--~dl~~~~lVi~ 75 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLL--KAGAQLRVIAEELE--SELTLLAEQ-----GGITWLARCFDA--DILEGAFLVIA 75 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHH--HCCCEEEEEcCCCC--HHHHHHHHc-----CCEEEEeCCCCH--HHhCCcEEEEE
Confidence 35689999999988887554433 26789998876543 222223222 368888887652 34578999998
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEe-ccchhhhcCCC
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRS-AKGARAFLYPV 251 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~-~~g~~~~lyp~ 251 (284)
+... .++-..+....+.-|+++... ......|.+|.
T Consensus 76 at~d-------~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~~pa 112 (205)
T TIGR01470 76 ATDD-------EELNRRVAHAARARGVPVNVVDDPELCSFIFPS 112 (205)
T ss_pred CCCC-------HHHHHHHHHHHHHcCCEEEECCCcccCeEEEee
Confidence 8765 223333444444556666433 22334465554
No 342
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.44 E-value=0.002 Score=61.65 Aligned_cols=107 Identities=16% Similarity=0.130 Sum_probs=75.1
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC-------CC
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL-------GE 202 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l-------~~ 202 (284)
.+.++|.+|-| .|.....+-. .+|..++++++++|++++.|++++.... +++..++-.|..+..... ..
T Consensus 295 ~~~~~lvvg~g-gG~l~sfl~~-~~p~~~i~~ve~dP~~l~va~q~f~f~q--~~r~~V~i~dGl~~~~~~~k~~~~~~~ 370 (482)
T KOG2352|consen 295 TGGKQLVVGLG-GGGLPSFLHM-SLPKFQITAVEIDPEMLEVATQYFGFMQ--SDRNKVHIADGLDFLQRTAKSQQEDIC 370 (482)
T ss_pred ccCcEEEEecC-CCccccceee-ecCccceeEEEEChhHhhccHhhhchhh--hhhhhhhHhhchHHHHHHhhccccccC
Confidence 34577788777 4544444444 5788999999999999999999986543 346777777876644222 56
Q ss_pred ccEEEEcCcC----CCCHH----HHHHHHHHHHhccccCcEEEEEe
Q 039591 203 YDCIFLAALV----GMSKE----EKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 203 fD~V~~~~~~----~~~~~----~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
||+++.+... ++..+ -.+.++..+...+.|.|.+++..
T Consensus 371 ~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 371 PDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred CcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence 9999986422 22211 12677788889999999998865
No 343
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.44 E-value=0.026 Score=51.18 Aligned_cols=97 Identities=25% Similarity=0.261 Sum_probs=65.5
Q ss_pred CeEEEecCCCChHHHHH-HHhhcCCCcEEEEEeCCHHHHHHHHHHHhh-------ccCCC--------CCeEEEEcchhh
Q 039591 132 KKVAFVGSGPMPLTSIV-MAKNHLKATHFDNFDIDEAANNVARRIVAT-------DFEFE--------KRMKFLTGDILQ 195 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~-la~~~~~~~~V~~vDis~~~~~~A~~~~~~-------~~~l~--------~~v~~~~~D~~~ 195 (284)
++|.+||+|.+|..-.. +++ .|.+|+.+|.+++.++.+++.+.+ .+.+. .++.+ ..+..
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~---~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~- 79 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAA---AGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC-TTNLE- 79 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe-eCCHH-
Confidence 58999999988865443 333 678999999999999876654321 11010 11222 22322
Q ss_pred hhccCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEE
Q 039591 196 VKEKLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLV 238 (284)
Q Consensus 196 ~~~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~ 238 (284)
.....|+|+.+... .++.|..++.++.+.++|+.+|+.
T Consensus 80 ---~~~~aD~Vieav~e--~~~~k~~v~~~l~~~~~~~~il~s 117 (295)
T PLN02545 80 ---ELRDADFIIEAIVE--SEDLKKKLFSELDRICKPSAILAS 117 (295)
T ss_pred ---HhCCCCEEEEcCcc--CHHHHHHHHHHHHhhCCCCcEEEE
Confidence 23678999998653 356789999999999999987763
No 344
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=96.43 E-value=0.028 Score=50.96 Aligned_cols=93 Identities=17% Similarity=0.187 Sum_probs=67.6
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
..++.+||..|+|.+|..++.+|+ ..|.+|++++.+++..+.++++ | ....+.+ . + . ...+.+|+|+
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~--~~G~~vi~~~~~~~~~~~~~~~----g-~~~~~~~-~-~---~-~~~~~~d~vi 219 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLA--LTGPDVVLVGRHSEKLALARRL----G-VETVLPD-E-A---E-SEGGGFDVVV 219 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH--HcCCeEEEEcCCHHHHHHHHHc----C-CcEEeCc-c-c---c-ccCCCCCEEE
Confidence 367889999999999999999998 4678899999999999888873 3 1111111 1 1 1 1225799999
Q ss_pred EcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
..... ...++.+.+.++++|.++...
T Consensus 220 d~~g~-------~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 220 EATGS-------PSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred ECCCC-------hHHHHHHHHHhhcCCEEEEEc
Confidence 87543 346777888999999998743
No 345
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=96.36 E-value=0.03 Score=51.58 Aligned_cols=98 Identities=19% Similarity=0.167 Sum_probs=66.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCccE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEYDC 205 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~fD~ 205 (284)
.++++|+..|+|++|..++.+|+ ..|. +|++++.+++..+.+++. | ...-+.....+..+..... +.+|+
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~--~~G~~~v~~~~~~~~~~~~~~~~----g-~~~~~~~~~~~~~~~~~~~~~~~~d~ 246 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLK--ALGPANIIVVDIDEAKLEAAKAA----G-ADVVVNGSDPDAAKRIIKAAGGGVDA 246 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHH--HcCCCeEEEEeCCHHHHHHHHHh----C-CcEEecCCCccHHHHHHHHhCCCCcE
Confidence 46789999999999999999998 3466 799999999988887653 3 1111111111211111111 36999
Q ss_pred EEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+..... ...++.+.+.|+++|+++..+
T Consensus 247 vid~~g~-------~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 247 VIDFVNN-------SATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred EEECCCC-------HHHHHHHHHHhhcCCeEEEEC
Confidence 9976543 356888899999999998654
No 346
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=96.36 E-value=0.045 Score=49.77 Aligned_cols=97 Identities=13% Similarity=0.106 Sum_probs=66.5
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
..++.+||..|+|++|..++.+|+ ..|.+|++++.+++..+.+++. + ...-+.....+.... . .+.+|+++
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~--~~G~~v~~~~~~~~~~~~~~~~----g-~~~~~~~~~~~~~~~-~-~~~~d~vi 230 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYAR--AMGFETVAITRSPDKRELARKL----G-ADEVVDSGAELDEQA-A-AGGADVIL 230 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHh----C-CcEEeccCCcchHHh-c-cCCCCEEE
Confidence 467789999999989998888888 3578999999999988887553 2 111111111111111 1 14699999
Q ss_pred EcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
..... ......+.+.|+++|.++..+
T Consensus 231 ~~~~~-------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 231 VTVVS-------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ECCCc-------HHHHHHHHHhcccCCEEEEEC
Confidence 76433 346677889999999998765
No 347
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=96.30 E-value=0.025 Score=52.96 Aligned_cols=99 Identities=16% Similarity=0.161 Sum_probs=65.1
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcc--hhhhhccC--CC
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGD--ILQVKEKL--GE 202 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D--~~~~~~~l--~~ 202 (284)
..++++|+..|+|++|..++.+|+ ..|. +|+.+|.+++..+.++++ | ....+.....+ ..+....+ +.
T Consensus 188 ~~~g~~VlV~G~g~vG~~~~~~a~--~~G~~~Vi~~~~~~~~~~~a~~l----G-a~~~i~~~~~~~~~~~~v~~~~~~~ 260 (373)
T cd08299 188 VTPGSTCAVFGLGGVGLSAIMGCK--AAGASRIIAVDINKDKFAKAKEL----G-ATECINPQDYKKPIQEVLTEMTDGG 260 (373)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEcCCHHHHHHHHHc----C-CceEecccccchhHHHHHHHHhCCC
Confidence 367889999999999999999998 3466 899999999998888654 3 11222222111 22111111 46
Q ss_pred ccEEEEcCcCCCCHHHHHHHHHHHHh-ccccCcEEEEEe
Q 039591 203 YDCIFLAALVGMSKEEKMKIIRHIRK-YMKDGGILLVRS 240 (284)
Q Consensus 203 fD~V~~~~~~~~~~~~k~~~l~~~~~-~L~pGG~lv~~~ 240 (284)
+|+|+.+... ...+..... .+++||+++..+
T Consensus 261 ~d~vld~~g~-------~~~~~~~~~~~~~~~G~~v~~g 292 (373)
T cd08299 261 VDFSFEVIGR-------LDTMKAALASCHEGYGVSVIVG 292 (373)
T ss_pred CeEEEECCCC-------cHHHHHHHHhhccCCCEEEEEc
Confidence 9999987543 344555444 456899988776
No 348
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=96.26 E-value=0.025 Score=51.80 Aligned_cols=98 Identities=19% Similarity=0.217 Sum_probs=68.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc---cCCCccE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE---KLGEYDC 205 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~---~l~~fD~ 205 (284)
.++++||..|+|..|..++.+|+ ..|.+|+++..+++..+.+++. + ..+-+.....+..+... .-..+|+
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~--~~g~~v~~~~~s~~~~~~~~~~----g-~~~v~~~~~~~~~~~l~~~~~~~~vd~ 230 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAK--ARGARVIVVDIDDERLEFAREL----G-ADDTINVGDEDVAARLRELTDGEGADV 230 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--HcCCeEEEECCCHHHHHHHHHh----C-CCEEecCcccCHHHHHHHHhCCCCCCE
Confidence 67889999999978999999998 3678999999999988887654 2 11223333333222211 1145999
Q ss_pred EEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
++..... ...+..+.+.|+++|.++..+
T Consensus 231 vld~~g~-------~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 231 VIDATGN-------PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred EEECCCC-------HHHHHHHHHHHhcCCEEEEEc
Confidence 9987543 356778889999999988654
No 349
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.25 E-value=0.039 Score=50.69 Aligned_cols=95 Identities=19% Similarity=0.156 Sum_probs=58.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHH-HHHHHHHhhccCCCCCeEEEE-cchhhhhccCCCccEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAAN-NVARRIVATDFEFEKRMKFLT-GDILQVKEKLGEYDCI 206 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~-~~A~~~~~~~~~l~~~v~~~~-~D~~~~~~~l~~fD~V 206 (284)
.++.+|+.+|+|++|.......+ ...+.+|+.++.+++.. +.|++. + . ..+. .|.. ..+..+|+|
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~-~~g~~~V~v~~r~~~ra~~la~~~----g---~--~~~~~~~~~---~~l~~aDvV 242 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLA-AKGVAEITIANRTYERAEELAKEL----G---G--NAVPLDELL---ELLNEADVV 242 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHc----C---C--eEEeHHHHH---HHHhcCCEE
Confidence 46899999999999987766555 23446899999998754 444443 3 1 2222 2222 223679999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|.+.....+ ...+..+.+..+.++.+++.-
T Consensus 243 i~at~~~~~----~~~~~~~~~~~~~~~~~viDl 272 (311)
T cd05213 243 ISATGAPHY----AKIVERAMKKRSGKPRLIVDL 272 (311)
T ss_pred EECCCCCch----HHHHHHHHhhCCCCCeEEEEe
Confidence 999765322 333444433333356777765
No 350
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=96.24 E-value=0.013 Score=57.57 Aligned_cols=101 Identities=19% Similarity=0.239 Sum_probs=69.9
Q ss_pred CCCeEEEecCCCChHH-HHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhc-------cCCC--------CCeEEEEcch
Q 039591 130 QPKKVAFVGSGPMPLT-SIVMAKNHLKATHFDNFDIDEAANNVARRIVATD-------FEFE--------KRMKFLTGDI 193 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~-ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~-------~~l~--------~~v~~~~~D~ 193 (284)
+-++|..||+|.+|.. +..+++ .|..|+.+|.+++.++.+.+.+++. |.++ .++++. .|.
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~---aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~ 81 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQ---AGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EAL 81 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH
Confidence 3468999999988864 444555 6899999999999999976554321 1000 124432 333
Q ss_pred hhhhccCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 194 LQVKEKLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 194 ~~~~~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
. ++...|+||.+..- ..+-|..++.++.+.++|+.++...+
T Consensus 82 ~----~~~~aDlViEav~E--~~~vK~~vf~~l~~~~~~~ailasnt 122 (507)
T PRK08268 82 A----DLADCDLVVEAIVE--RLDVKQALFAQLEAIVSPDCILATNT 122 (507)
T ss_pred H----HhCCCCEEEEcCcc--cHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 2 23579999998654 34678999999998889988886544
No 351
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=96.24 E-value=0.046 Score=50.06 Aligned_cols=97 Identities=14% Similarity=0.148 Sum_probs=66.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc---CCCcc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK---LGEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~---l~~fD 204 (284)
.++++||..|+|+.|..++.+|+ ..|. +|++++.+++..+.+++. | . ..+.....+....... -+.+|
T Consensus 166 ~~~~~vlI~g~g~vg~~~~~~a~--~~g~~~v~~~~~~~~~~~~~~~~----g-~-~~~~~~~~~~~~~l~~~~~~~~~d 237 (344)
T cd08284 166 RPGDTVAVIGCGPVGLCAVLSAQ--VLGAARVFAVDPVPERLERAAAL----G-A-EPINFEDAEPVERVREATEGRGAD 237 (344)
T ss_pred ccCCEEEEECCcHHHHHHHHHHH--HcCCceEEEEcCCHHHHHHHHHh----C-C-eEEecCCcCHHHHHHHHhCCCCCC
Confidence 67889999999999999999998 3564 899999998888777663 3 1 1122212222221111 14699
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+|+..... ...+....+.|+++|+++..+
T Consensus 238 vvid~~~~-------~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 238 VVLEAVGG-------AAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred EEEECCCC-------HHHHHHHHHhcccCCEEEEEC
Confidence 99986543 346778888999999998765
No 352
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.21 E-value=0.061 Score=41.37 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=63.6
Q ss_pred EEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh--c--cCCCccEEEEc
Q 039591 134 VAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK--E--KLGEYDCIFLA 209 (284)
Q Consensus 134 VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~--~--~l~~fD~V~~~ 209 (284)
|+.+|+|+.|.......+ . .+..|+.+|.+++.++.+++. .+.++.||..+.. . .+.++|.|++.
T Consensus 1 vvI~G~g~~~~~i~~~L~-~-~~~~vvvid~d~~~~~~~~~~---------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLK-E-GGIDVVVIDRDPERVEELREE---------GVEVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp EEEES-SHHHHHHHHHHH-H-TTSEEEEEESSHHHHHHHHHT---------TSEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred eEEEcCCHHHHHHHHHHH-h-CCCEEEEEECCcHHHHHHHhc---------ccccccccchhhhHHhhcCccccCEEEEc
Confidence 578999987776655544 1 445899999999998877653 2678899988642 1 23789999887
Q ss_pred CcCCCCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 210 ALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 210 ~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
... +...-.+-...+.+.|...++.+..
T Consensus 70 ~~~----d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 70 TDD----DEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp SSS----HHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred cCC----HHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 653 3334444555677888888888763
No 353
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=96.21 E-value=0.034 Score=51.14 Aligned_cols=99 Identities=20% Similarity=0.209 Sum_probs=67.7
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcE-EEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcch----hhhhccC--
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATH-FDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDI----LQVKEKL-- 200 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~-V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~----~~~~~~l-- 200 (284)
..++++||..|+|..|..++.+|+ . .|.+ |++++.+++..+.+++. + ...-+.....+. .+.....
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak-~-~G~~~v~~~~~~~~~~~~~~~~----g-~~~vi~~~~~~~~~~~~~~~~~~~~ 232 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAK-A-FGATKVVVTDIDPSRLEFAKEL----G-ATHTVNVRTEDTPESAEKIAELLGG 232 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH-H-cCCcEEEEECCCHHHHHHHHHc----C-CcEEeccccccchhHHHHHHHHhCC
Confidence 377899999999988999999998 3 5666 99999999988887664 2 111122222221 1111111
Q ss_pred CCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 201 GEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 201 ~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+++|+|+.+... ...+....+.|+++|+++..+
T Consensus 233 ~~~d~vld~~g~-------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 233 KGPDVVIECTGA-------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCEEEECCCC-------HHHHHHHHHHhhcCCEEEEEc
Confidence 459999987553 336778889999999998654
No 354
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=96.19 E-value=0.048 Score=50.00 Aligned_cols=99 Identities=14% Similarity=0.100 Sum_probs=67.9
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc---CCCc
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK---LGEY 203 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~---l~~f 203 (284)
..++++|+..|+|++|..++.+|+ . .|. .+++++.+++..+.+++. | ...-+.....+..+.... -..+
T Consensus 166 ~~~g~~vlI~g~g~vg~~~~~lak-~-~G~~~v~~~~~~~~~~~~~~~~----g-a~~v~~~~~~~~~~~i~~~~~~~~~ 238 (345)
T cd08287 166 VRPGSTVVVVGDGAVGLCAVLAAK-R-LGAERIIAMSRHEDRQALAREF----G-ATDIVAERGEEAVARVRELTGGVGA 238 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH-H-cCCCEEEEECCCHHHHHHHHHc----C-CceEecCCcccHHHHHHHhcCCCCC
Confidence 367889999999999999999998 3 466 599999999887777764 3 111222222222221111 1469
Q ss_pred cEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 204 DCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 204 D~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+++..... ...+..+.+.++++|+++..+
T Consensus 239 d~il~~~g~-------~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 239 DAVLECVGT-------QESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred CEEEECCCC-------HHHHHHHHHhhccCCEEEEec
Confidence 999976532 457888899999999998765
No 355
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=96.18 E-value=0.029 Score=51.51 Aligned_cols=98 Identities=19% Similarity=0.293 Sum_probs=67.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc---CCCcc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK---LGEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~---l~~fD 204 (284)
.++++|+..|+|++|..++.+|+ . .|. +|++++.+++..+.++++ | ...-+.....+..+.... -+.+|
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~-~-~G~~~v~~~~~~~~~~~~~~~l----g-~~~~~~~~~~~~~~~~~~~~~~~~~d 234 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAK-H-VGARHVVITDVNEYRLELARKM----G-ATRAVNVAKEDLRDVMAELGMTEGFD 234 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHH-H-cCCCEEEEEcCCHHHHHHHHHh----C-CcEEecCccccHHHHHHHhcCCCCCC
Confidence 57889999999999999999998 3 456 688889899888777664 3 111122222232222211 25699
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+|+.+... ...+..+.+.|+++|.++..+
T Consensus 235 ~v~d~~g~-------~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 235 VGLEMSGA-------PSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred EEEECCCC-------HHHHHHHHHHHhcCCEEEEEe
Confidence 99986543 456777888999999998875
No 356
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.18 E-value=0.042 Score=48.24 Aligned_cols=98 Identities=19% Similarity=0.217 Sum_probs=66.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEE-EEcchhhhhcc-C-CCccE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKF-LTGDILQVKEK-L-GEYDC 205 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~-~~~D~~~~~~~-l-~~fD~ 205 (284)
.+++.+||||+...|+|-..|-+ ...+|+++|..-..++.--+. +.|+.. -..|+.....+ + +..|+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~---gAk~VyavDVG~~Ql~~kLR~-------d~rV~~~E~tN~r~l~~~~~~~~~d~ 147 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR---GAKHVYAVDVGYGQLHWKLRN-------DPRVIVLERTNVRYLTPEDFTEKPDL 147 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHc---CCcEEEEEEccCCccCHhHhc-------CCcEEEEecCChhhCCHHHcccCCCe
Confidence 78899999999965655544443 567899999987666553332 244443 44566554332 2 56899
Q ss_pred EEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
++++... ..-..++..+...++|++.++..-
T Consensus 148 ~v~DvSF----ISL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 148 IVIDVSF----ISLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred EEEEeeh----hhHHHHHHHHHHhcCCCceEEEEe
Confidence 9988644 223678899999999999887643
No 357
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.17 E-value=0.018 Score=58.79 Aligned_cols=101 Identities=15% Similarity=0.070 Sum_probs=72.2
Q ss_pred CCeEEEecCCCChHHHHH-HHhhcCCCcEEEEEeCCHHHHHHHHHHHhhc-------cCCC--------CCeEEEEcchh
Q 039591 131 PKKVAFVGSGPMPLTSIV-MAKNHLKATHFDNFDIDEAANNVARRIVATD-------FEFE--------KRMKFLTGDIL 194 (284)
Q Consensus 131 ~~~VL~iGsGp~G~~ai~-la~~~~~~~~V~~vDis~~~~~~A~~~~~~~-------~~l~--------~~v~~~~~D~~ 194 (284)
-++|..||+|.+|..-.. +|. ..|..|+.+|.+++.++.+++.+.+. +.+. .++++. .|.
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~--~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~- 384 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTAT--KAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDY- 384 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHH--HcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CCh-
Confidence 368999999988865333 442 36899999999999999987655431 1111 234432 222
Q ss_pred hhhccCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 195 QVKEKLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 195 ~~~~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
..+...|+|+.+..- ..+-|.++|.++-++++|+++|.-.+
T Consensus 385 ---~~~~~aDlViEav~E--~~~~K~~v~~~le~~~~~~~ilasnT 425 (708)
T PRK11154 385 ---RGFKHADVVIEAVFE--DLALKQQMVAEVEQNCAPHTIFASNT 425 (708)
T ss_pred ---HHhccCCEEeecccc--cHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 234789999998643 45789999999999999999988655
No 358
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=96.15 E-value=0.035 Score=51.00 Aligned_cols=98 Identities=21% Similarity=0.212 Sum_probs=67.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh--ccCCCccE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK--EKLGEYDC 205 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~--~~l~~fD~ 205 (284)
.++.+||..|+|.+|..++.+|+ . .|. +|++++.+++..+.++++ + ....+.....+..... ..-+.+|+
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~-~-~G~~~v~~~~~~~~~~~~~~~~----g-~~~~~~~~~~~~~~~~~~~~~~~vd~ 234 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAK-A-AGASLVIASDPNPYRLELAKKM----G-ADVVINPREEDVVEVKSVTDGTGVDV 234 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-H-cCCcEEEEECCCHHHHHHHHHh----C-cceeeCcccccHHHHHHHcCCCCCCE
Confidence 57889999999988999999998 3 456 788889899888877764 3 1121222222322111 11257999
Q ss_pred EEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+.+... ......+.+.|+++|.++..+
T Consensus 235 vld~~g~-------~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 235 VLEMSGN-------PKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred EEECCCC-------HHHHHHHHHHhccCCEEEEEc
Confidence 9987643 345677888999999998764
No 359
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=96.13 E-value=0.066 Score=48.68 Aligned_cols=98 Identities=12% Similarity=0.075 Sum_probs=80.9
Q ss_pred CCCCeEEEe-cCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCccE
Q 039591 129 VQPKKVAFV-GSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEYDC 205 (284)
Q Consensus 129 ~~~~~VL~i-GsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~fD~ 205 (284)
+.+++|+.- -+|+.|-.+..+|+ ++|++|+++=-+++..+.+.+-. | .+..+++...|..+.+.+. +..|+
T Consensus 149 k~GetvvVSaAaGaVGsvvgQiAK--lkG~rVVGiaGg~eK~~~l~~~l---G-fD~~idyk~~d~~~~L~~a~P~GIDv 222 (340)
T COG2130 149 KAGETVVVSAAAGAVGSVVGQIAK--LKGCRVVGIAGGAEKCDFLTEEL---G-FDAGIDYKAEDFAQALKEACPKGIDV 222 (340)
T ss_pred CCCCEEEEEecccccchHHHHHHH--hhCCeEEEecCCHHHHHHHHHhc---C-CceeeecCcccHHHHHHHHCCCCeEE
Confidence 677877665 47889999999998 69999999999999999988743 3 4567899999987765433 78999
Q ss_pred EEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.|.+.. -.+++.+...|++.|++.+-.
T Consensus 223 yfeNVG--------g~v~DAv~~~ln~~aRi~~CG 249 (340)
T COG2130 223 YFENVG--------GEVLDAVLPLLNLFARIPVCG 249 (340)
T ss_pred EEEcCC--------chHHHHHHHhhccccceeeee
Confidence 998865 368999999999999999876
No 360
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.11 E-value=0.023 Score=58.06 Aligned_cols=99 Identities=17% Similarity=0.149 Sum_probs=71.5
Q ss_pred CeEEEecCCCChHHHHH-HHhhcCCCcEEEEEeCCHHHHHHHHHHHhhc-------cCC--------CCCeEEEEcchhh
Q 039591 132 KKVAFVGSGPMPLTSIV-MAKNHLKATHFDNFDIDEAANNVARRIVATD-------FEF--------EKRMKFLTGDILQ 195 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~-la~~~~~~~~V~~vDis~~~~~~A~~~~~~~-------~~l--------~~~v~~~~~D~~~ 195 (284)
++|..||+|.+|..-.. +|. .|..|+.+|.+++.++.+++.+.+. |.+ -.++++. .|.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~---~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-- 387 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSAS---KGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY-- 387 (715)
T ss_pred ceEEEECCchhHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH--
Confidence 58999999988876443 444 6899999999999998877654321 111 0234432 232
Q ss_pred hhccCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 196 VKEKLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 196 ~~~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
..+...|+|+.+..- ..+-|.++|.++-++++|+.+|.-.+
T Consensus 388 --~~~~~aDlViEav~E--~l~~K~~vf~~l~~~~~~~~ilasNT 428 (715)
T PRK11730 388 --AGFERVDVVVEAVVE--NPKVKAAVLAEVEQKVREDTILASNT 428 (715)
T ss_pred --HHhcCCCEEEecccC--cHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 234789999998653 45789999999999999999887655
No 361
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=96.11 E-value=0.035 Score=50.97 Aligned_cols=98 Identities=17% Similarity=0.151 Sum_probs=68.1
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEE-cchhhhhccC--CCccE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLT-GDILQVKEKL--GEYDC 205 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~-~D~~~~~~~l--~~fD~ 205 (284)
.++++|+..|+|++|..++.+|+ ..|.+|++++.+++..+.+++. | ...-+.... .+.......+ +.+|+
T Consensus 164 ~~~~~vlV~g~g~vg~~~~~~a~--~~G~~vi~~~~~~~~~~~~~~~----g-~~~~i~~~~~~~~~~~~~~~~~~~~d~ 236 (345)
T cd08260 164 KPGEWVAVHGCGGVGLSAVMIAS--ALGARVIAVDIDDDKLELAREL----G-AVATVNASEVEDVAAAVRDLTGGGAHV 236 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--HcCCeEEEEeCCHHHHHHHHHh----C-CCEEEccccchhHHHHHHHHhCCCCCE
Confidence 56789999999999999999998 3578999999999988887543 3 211222222 2322211111 37999
Q ss_pred EEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+..... ...+....+.|+++|.++..+
T Consensus 237 vi~~~g~-------~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 237 SVDALGI-------PETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred EEEcCCC-------HHHHHHHHHHhhcCCEEEEeC
Confidence 9976432 346777888999999988754
No 362
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=96.10 E-value=0.012 Score=46.75 Aligned_cols=89 Identities=21% Similarity=0.341 Sum_probs=54.5
Q ss_pred CeEEEEcchhhhhccC-CCccEEEEcCcCCCCHHH--HHHHHHHHHhccccCcEEEEEeccc-hhhhcCCCCCCCCCCCc
Q 039591 185 RMKFLTGDILQVKEKL-GEYDCIFLAALVGMSKEE--KMKIIRHIRKYMKDGGILLVRSAKG-ARAFLYPVVERHDLLDF 260 (284)
Q Consensus 185 ~v~~~~~D~~~~~~~l-~~fD~V~~~~~~~~~~~~--k~~~l~~~~~~L~pGG~lv~~~~~g-~~~~lyp~v~~~~l~gf 260 (284)
++++..||+.+....+ ..||+||.++....-.++ ..++++.+++.++|||++..-++.| +|.-+ ...||
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a~~Vr~~L-------~~aGF 104 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSAGAVRRAL-------QQAGF 104 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--BHHHHHHH-------HHCTE
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeechHHHHHHH-------HHcCC
Confidence 4678889998876666 789999999754211011 2789999999999999999876444 34333 33799
Q ss_pred EEEEEEcCCCceeeEEEEEeec
Q 039591 261 EVLSIFHPIDEVINSVILVRKP 282 (284)
Q Consensus 261 ~~~~~~~p~~~v~nsvi~~rk~ 282 (284)
++-..-...+. ...+.|.||
T Consensus 105 ~v~~~~g~g~K--r~~~~a~~~ 124 (124)
T PF05430_consen 105 EVEKVPGFGRK--REMLRAVKP 124 (124)
T ss_dssp EEEEEE-STTS--SEEEEEEC-
T ss_pred EEEEcCCCCCc--chheEEEcC
Confidence 98655443322 235555554
No 363
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=96.09 E-value=0.035 Score=50.78 Aligned_cols=98 Identities=15% Similarity=0.185 Sum_probs=66.3
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC---CCccE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL---GEYDC 205 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l---~~fD~ 205 (284)
.++++||..|+|++|..++.+|+ ...+.+|++++.+++..+.+++. | ...-+... .+..+....+ ..+|+
T Consensus 166 ~~~~~vlI~g~~~vg~~~~~~a~-~~g~~~v~~~~~~~~~~~~~~~~----g-~~~~~~~~-~~~~~~i~~~~~~~~~dv 238 (340)
T cd05284 166 DPGSTVVVIGVGGLGHIAVQILR-ALTPATVIAVDRSEEALKLAERL----G-ADHVLNAS-DDVVEEVRELTGGRGADA 238 (340)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHH-HhCCCcEEEEeCCHHHHHHHHHh----C-CcEEEcCC-ccHHHHHHHHhCCCCCCE
Confidence 56889999999999998888998 33337899999999887776543 3 11111111 1111111111 46999
Q ss_pred EEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+..... ...++.+.+.|+++|+++..+
T Consensus 239 vld~~g~-------~~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 239 VIDFVGS-------DETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred EEEcCCC-------HHHHHHHHHHhhcCCEEEEEc
Confidence 9987553 356788889999999998765
No 364
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.09 E-value=0.0035 Score=60.30 Aligned_cols=97 Identities=12% Similarity=0.178 Sum_probs=59.4
Q ss_pred CeEEEecCCCChHHHHHHHhhcCCCcEEEEE---eCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 132 KKVAFVGSGPMPLTSIVMAKNHLKATHFDNF---DIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~la~~~~~~~~V~~v---Dis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
+.+||+||| .|-.+..|.. .+..+..+ |..+..+..|-+. | +..-+.. -+. ..++.....||+|-+
T Consensus 119 R~~LDvGcG-~aSF~a~l~~---r~V~t~s~a~~d~~~~qvqfaleR----G-vpa~~~~-~~s-~rLPfp~~~fDmvHc 187 (506)
T PF03141_consen 119 RTALDVGCG-VASFGAYLLE---RNVTTMSFAPNDEHEAQVQFALER----G-VPAMIGV-LGS-QRLPFPSNAFDMVHC 187 (506)
T ss_pred EEEEeccce-eehhHHHHhh---CCceEEEcccccCCchhhhhhhhc----C-cchhhhh-hcc-ccccCCccchhhhhc
Confidence 467999999 8888877776 34433222 4555566665543 2 1111111 111 123344478999987
Q ss_pred cCc-CCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AAL-VGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~-~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+.. +.+. ....-++-++-|+|||||++++.+
T Consensus 188 src~i~W~-~~~g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 188 SRCLIPWH-PNDGFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred ccccccch-hcccceeehhhhhhccCceEEecC
Confidence 753 3433 333567888999999999999866
No 365
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=96.06 E-value=0.033 Score=49.54 Aligned_cols=108 Identities=15% Similarity=0.121 Sum_probs=69.3
Q ss_pred CCCCeEEEecCCCChHHHHHHHhh---c-CCCcEEEEEeC--------------------------CHHHHHHHHHHHhh
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKN---H-LKATHFDNFDI--------------------------DEAANNVARRIVAT 178 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~---~-~~~~~V~~vDi--------------------------s~~~~~~A~~~~~~ 178 (284)
.-+..|+|.|+- -|-+++.++.. . .++-+|.++|- .....+..++++.+
T Consensus 73 ~vpGdivE~GV~-rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~ 151 (248)
T PF05711_consen 73 DVPGDIVECGVW-RGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFAR 151 (248)
T ss_dssp TS-SEEEEE--T-TSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCC
T ss_pred CCCeEEEEEeeC-CCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHH
Confidence 557799999999 77777665431 1 13446777763 12246667777777
Q ss_pred ccCCCCCeEEEEcchhhhhccC--CCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 179 DFEFEKRMKFLTGDILQVKEKL--GEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 179 ~~~l~~~v~~~~~D~~~~~~~l--~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.|.+.++++++.|.+.+..... +++-++.++... + +.-...++.++..|.|||+|++..
T Consensus 152 ~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl--Y-esT~~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 152 YGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL--Y-ESTKDALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp TTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---S--H-HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred cCCCcccEEEECCcchhhhccCCCccEEEEEEeccc--h-HHHHHHHHHHHhhcCCCeEEEEeC
Confidence 6655689999999998865533 556666666543 3 566889999999999999999987
No 366
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=96.05 E-value=0.06 Score=55.25 Aligned_cols=99 Identities=17% Similarity=0.134 Sum_probs=71.8
Q ss_pred CeEEEecCCCChHHHH-HHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhc-------cCCC--------CCeEEEEcchhh
Q 039591 132 KKVAFVGSGPMPLTSI-VMAKNHLKATHFDNFDIDEAANNVARRIVATD-------FEFE--------KRMKFLTGDILQ 195 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai-~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~-------~~l~--------~~v~~~~~D~~~ 195 (284)
++|..||+|.+|..-. .++. .|..|+.+|.+++.++.+.+.+.+. +.++ .++++. .|.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~---~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-- 409 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVD---KGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDY-- 409 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHh---CCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH--
Confidence 5899999998887643 3444 6899999999999999987765431 1111 233332 222
Q ss_pred hhccCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 196 VKEKLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 196 ~~~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
..+...|+|+.+..- ..+-|.++|.++-++++|+++|...+
T Consensus 410 --~~~~~aDlViEAv~E--~l~~K~~vf~~l~~~~~~~~ilasNT 450 (737)
T TIGR02441 410 --SGFKNADMVIEAVFE--DLSLKHKVIKEVEAVVPPHCIIASNT 450 (737)
T ss_pred --HHhccCCeehhhccc--cHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 134789999988653 45789999999999999999988765
No 367
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.04 E-value=0.053 Score=51.87 Aligned_cols=97 Identities=18% Similarity=0.272 Sum_probs=62.4
Q ss_pred CeEEEecCCCChHHHH-HHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhh------------hc
Q 039591 132 KKVAFVGSGPMPLTSI-VMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQV------------KE 198 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai-~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~------------~~ 198 (284)
.+|.+||.|-+|.... .|++ .|.+|+++|+|++.++..++ |. +.+...+..+. ..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~---~G~~V~~~D~~~~~v~~l~~-----g~----~~~~e~~l~~~l~~~~~~g~l~~~~ 71 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFAS---RQKQVIGVDINQHAVDTINR-----GE----IHIVEPDLDMVVKTAVEGGYLRATT 71 (415)
T ss_pred cEEEEECcchhhHHHHHHHHh---CCCEEEEEeCCHHHHHHHHC-----CC----CCcCCCCHHHHHHHHhhcCceeeec
Confidence 5899999997776644 3554 57899999999999886321 10 11111111110 01
Q ss_pred cCCCccEEEEcCcCCC------CHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 199 KLGEYDCIFLAALVGM------SKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 199 ~l~~fD~V~~~~~~~~------~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+.+..|+||++.+... ....-...++.+.+.+++|.+++..+
T Consensus 72 ~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~S 119 (415)
T PRK11064 72 TPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILES 119 (415)
T ss_pred ccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 2246899998866531 11344567788999999999998877
No 368
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=96.04 E-value=0.048 Score=49.50 Aligned_cols=98 Identities=13% Similarity=0.125 Sum_probs=66.8
Q ss_pred CCCCeEEEec-CCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCccE
Q 039591 129 VQPKKVAFVG-SGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEYDC 205 (284)
Q Consensus 129 ~~~~~VL~iG-sGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~fD~ 205 (284)
.++++||..| +|++|..++.+|+ ..|.+|++++.+++..+.+++.. + ...-+.....+..+....+ +.+|+
T Consensus 144 ~~~~~vlI~g~~g~ig~~~~~~a~--~~G~~vi~~~~~~~~~~~~~~~~---g-~~~~~~~~~~~~~~~v~~~~~~~~d~ 217 (329)
T cd05288 144 KPGETVVVSAAAGAVGSVVGQIAK--LLGARVVGIAGSDEKCRWLVEEL---G-FDAAINYKTPDLAEALKEAAPDGIDV 217 (329)
T ss_pred CCCCEEEEecCcchHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHhhc---C-CceEEecCChhHHHHHHHhccCCceE
Confidence 5678999999 6889999999998 36789999999999888776632 2 1112222222222211111 57999
Q ss_pred EEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
++.+.. ...+..+.+.++++|+++..+
T Consensus 218 vi~~~g--------~~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 218 YFDNVG--------GEILDAALTLLNKGGRIALCG 244 (329)
T ss_pred EEEcch--------HHHHHHHHHhcCCCceEEEEe
Confidence 996543 236777888999999988665
No 369
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=96.03 E-value=0.06 Score=48.93 Aligned_cols=92 Identities=14% Similarity=0.192 Sum_probs=65.9
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
..++.+||..|+|++|..++.+++ ..|.+|++++.+++..+.+++. | . + .++..+ +. .-+.+|+++
T Consensus 165 ~~~~~~vlV~g~g~vg~~~~~la~--~~g~~v~~~~~~~~~~~~~~~~----g-~-~--~~~~~~--~~--~~~~vD~vi 230 (329)
T cd08298 165 LKPGQRLGLYGFGASAHLALQIAR--YQGAEVFAFTRSGEHQELAREL----G-A-D--WAGDSD--DL--PPEPLDAAI 230 (329)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHH--HCCCeEEEEcCChHHHHHHHHh----C-C-c--EEeccC--cc--CCCcccEEE
Confidence 367889999999999999999998 3678999999999877777543 3 1 1 111111 10 114689988
Q ss_pred EcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
..... ...++.+.+.|+++|+++..+
T Consensus 231 ~~~~~-------~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 231 IFAPV-------GALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EcCCc-------HHHHHHHHHHhhcCCEEEEEc
Confidence 76443 356888999999999999754
No 370
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.99 E-value=0.035 Score=48.59 Aligned_cols=86 Identities=14% Similarity=0.157 Sum_probs=59.1
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh-cc----CCCcc
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK-EK----LGEYD 204 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~-~~----l~~fD 204 (284)
+.-++||||.|. -+.=-.+.. +..|.+++|.|+|+.+++.|+.++..-.++...++.....=.+.. .. .+.||
T Consensus 78 ~~i~~LDIGvGA-nCIYPliG~-~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd 155 (292)
T COG3129 78 KNIRILDIGVGA-NCIYPLIGV-HEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYD 155 (292)
T ss_pred CceEEEeeccCc-ccccccccc-eeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceee
Confidence 455789999993 222222333 457899999999999999999998875456667777654322211 11 26899
Q ss_pred EEEEcCcCCCCHH
Q 039591 205 CIFLAALVGMSKE 217 (284)
Q Consensus 205 ~V~~~~~~~~~~~ 217 (284)
+++++.+.+...+
T Consensus 156 ~tlCNPPFh~s~~ 168 (292)
T COG3129 156 ATLCNPPFHDSAA 168 (292)
T ss_pred eEecCCCcchhHH
Confidence 9999988865433
No 371
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.99 E-value=0.061 Score=49.09 Aligned_cols=98 Identities=16% Similarity=0.201 Sum_probs=62.9
Q ss_pred CeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhc-cCCC---------CCeEEEEcchhhhhccCC
Q 039591 132 KKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATD-FEFE---------KRMKFLTGDILQVKEKLG 201 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~-~~l~---------~~v~~~~~D~~~~~~~l~ 201 (284)
++|.+||+|.+|..-..... ..|.+|+.+|.+++.++.+++..... +... .++++ ..|..+ ..+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~--~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~---~~~ 78 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFA--RKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAA---AVS 78 (311)
T ss_pred cEEEEECCCHHHHHHHHHHH--hCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHH---Hhc
Confidence 58999999988865433322 26789999999999998887643211 1000 11232 233322 236
Q ss_pred CccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEE
Q 039591 202 EYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILL 237 (284)
Q Consensus 202 ~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv 237 (284)
..|+|+.+... ....+..++..+.+.++++.+++
T Consensus 79 ~aDlVi~av~~--~~~~~~~v~~~l~~~~~~~~ii~ 112 (311)
T PRK06130 79 GADLVIEAVPE--KLELKRDVFARLDGLCDPDTIFA 112 (311)
T ss_pred cCCEEEEeccC--cHHHHHHHHHHHHHhCCCCcEEE
Confidence 78999998654 12357889999888777766554
No 372
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=95.99 E-value=0.052 Score=50.03 Aligned_cols=100 Identities=16% Similarity=0.139 Sum_probs=66.3
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC---CCcc
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL---GEYD 204 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l---~~fD 204 (284)
..++++|+..|+|.+|..++.+|+ ......|+++|.+++..+.+++. | ...-+.....+..+....+ ..+|
T Consensus 172 ~~~g~~vlI~g~g~vG~~~~~~a~-~~G~~~v~~~~~~~~~~~~~~~~----g-~~~v~~~~~~~~~~~~~~~~~~~~vd 245 (350)
T cd08256 172 IKFDDVVVLAGAGPLGLGMIGAAR-LKNPKKLIVLDLKDERLALARKF----G-ADVVLNPPEVDVVEKIKELTGGYGCD 245 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH-HcCCcEEEEEcCCHHHHHHHHHc----C-CcEEecCCCcCHHHHHHHHhCCCCCC
Confidence 367889999999999999999998 44334688999999888777654 3 1111111112222211111 3599
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+|+..... ...+..+.+.++++|+++..+
T Consensus 246 vvld~~g~-------~~~~~~~~~~l~~~G~~v~~g 274 (350)
T cd08256 246 IYIEATGH-------PSAVEQGLNMIRKLGRFVEFS 274 (350)
T ss_pred EEEECCCC-------hHHHHHHHHHhhcCCEEEEEc
Confidence 99976442 235677888999999998754
No 373
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.99 E-value=0.025 Score=54.66 Aligned_cols=89 Identities=17% Similarity=0.060 Sum_probs=63.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
..+++|+.+|.|++|......++ ..|++|+.+|.++.....|.. .| +++ .++.+. +...|+|+.
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~--a~Ga~ViV~e~dp~~a~~A~~----~G-----~~~--~~leel---l~~ADIVI~ 315 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALR--GFGARVVVTEIDPICALQAAM----EG-----YQV--VTLEDV---VETADIFVT 315 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCchhHHHHHh----cC-----cee--ccHHHH---HhcCCEEEE
Confidence 57899999999999988777776 367899999999887544332 12 222 233332 367999998
Q ss_pred cCcCCCCHHHHHHHH-HHHHhccccCcEEEEEe
Q 039591 209 AALVGMSKEEKMKII-RHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l-~~~~~~L~pGG~lv~~~ 240 (284)
+... ..++ .+..+.||||++|+-.+
T Consensus 316 atGt-------~~iI~~e~~~~MKpGAiLINvG 341 (476)
T PTZ00075 316 ATGN-------KDIITLEHMRRMKNNAIVGNIG 341 (476)
T ss_pred CCCc-------ccccCHHHHhccCCCcEEEEcC
Confidence 8643 3455 47788999999998755
No 374
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=95.98 E-value=0.037 Score=51.47 Aligned_cols=98 Identities=16% Similarity=0.141 Sum_probs=66.3
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcE-EEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc---cCCCcc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATH-FDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE---KLGEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~-V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~---~l~~fD 204 (284)
.++.+||..|+|++|..++.+|+ . .|.+ |++++.+++..+.+++. + ...-+.....+..+... .-..+|
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak-~-~G~~~vi~~~~s~~~~~~~~~~----g-~~~v~~~~~~~~~~~l~~~~~~~~~d 258 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAK-A-FGASPIIAVDVRDEKLAKAKEL----G-ATHTVNAAKEDAVAAIREITGGRGVD 258 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHH-H-cCCCeEEEEeCCHHHHHHHHHh----C-CceEecCCcccHHHHHHHHhCCCCCC
Confidence 57789999999999999999998 3 4566 99999999988877653 2 11111211222221111 115699
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+|+..... ...+..+.+.|+++|.++..+
T Consensus 259 ~vld~vg~-------~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 259 VVVEALGK-------PETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred EEEEeCCC-------HHHHHHHHHHHhcCCEEEEEc
Confidence 99976443 236778889999999998764
No 375
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=95.96 E-value=0.086 Score=48.37 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=66.8
Q ss_pred ccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEE
Q 039591 127 GVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCI 206 (284)
Q Consensus 127 ~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V 206 (284)
...++.+|+..|+|++|..++.+++ ..|.++++++.+++..+.+++. + ...-+.....+... ...+.+|+|
T Consensus 166 ~~~~g~~vlV~g~g~vG~~~~~~a~--~~G~~v~~~~~~~~~~~~~~~~----g-~~~vi~~~~~~~~~--~~~~~~d~v 236 (337)
T cd05283 166 GVGPGKRVGVVGIGGLGHLAVKFAK--ALGAEVTAFSRSPSKKEDALKL----G-ADEFIATKDPEAMK--KAAGSLDLI 236 (337)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHH--HcCCeEEEEcCCHHHHHHHHHc----C-CcEEecCcchhhhh--hccCCceEE
Confidence 3467889999999999999999998 3578999999999988887643 2 11111111111111 112579999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+..... ...+..+.+.|+++|.++..+
T Consensus 237 ~~~~g~-------~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 237 IDTVSA-------SHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred EECCCC-------cchHHHHHHHhcCCCEEEEEe
Confidence 976543 224677788999999998765
No 376
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=95.94 E-value=0.074 Score=48.65 Aligned_cols=99 Identities=15% Similarity=0.232 Sum_probs=67.4
Q ss_pred cCCCCeEEEecCCC-ChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc---CCCc
Q 039591 128 VVQPKKVAFVGSGP-MPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK---LGEY 203 (284)
Q Consensus 128 ~~~~~~VL~iGsGp-~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~---l~~f 203 (284)
..++.+||..|+|+ .|..++.+|+ ..|.+|++++.+++..+.+++. + ...-+.....|..+.... .+.+
T Consensus 163 ~~~~~~vlV~g~~~~vg~~~~~~a~--~~g~~v~~~~~~~~~~~~~~~~----g-~~~v~~~~~~~~~~~~~~~~~~~~v 235 (341)
T cd08297 163 LKPGDWVVISGAGGGLGHLGVQYAK--AMGLRVIAIDVGDEKLELAKEL----G-ADAFVDFKKSDDVEAVKELTGGGGA 235 (341)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHH--HCCCeEEEEeCCHHHHHHHHHc----C-CcEEEcCCCccHHHHHHHHhcCCCC
Confidence 46789999999876 8888888998 3578999999999888776543 3 111122222222221111 2569
Q ss_pred cEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 204 DCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 204 D~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+|+.+... ...+..+.+.|+++|+++..+
T Consensus 236 d~vl~~~~~-------~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 236 HAVVVTAVS-------AAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred CEEEEcCCc-------hHHHHHHHHHhhcCCEEEEec
Confidence 999976544 356778889999999999765
No 377
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=95.93 E-value=0.039 Score=51.32 Aligned_cols=98 Identities=20% Similarity=0.183 Sum_probs=67.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcE-EEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc---CCCcc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATH-FDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK---LGEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~-V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~---l~~fD 204 (284)
.++.+||..|+|+.|..++.+|+ ..|.+ |++++.++...+.+++. | ....+.....+..+.... -..+|
T Consensus 181 ~~g~~vLI~g~g~vG~a~i~lak--~~G~~~Vi~~~~~~~~~~~~~~~----g-~~~vv~~~~~~~~~~l~~~~~~~~vd 253 (363)
T cd08279 181 RPGDTVAVIGCGGVGLNAIQGAR--IAGASRIIAVDPVPEKLELARRF----G-ATHTVNASEDDAVEAVRDLTDGRGAD 253 (363)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--HcCCCcEEEEcCCHHHHHHHHHh----C-CeEEeCCCCccHHHHHHHHcCCCCCC
Confidence 67889999999999999999998 35665 99999999988877543 3 111122112222221111 25699
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+++..... ...+..+.+.|+++|+++..+
T Consensus 254 ~vld~~~~-------~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 254 YAFEAVGR-------AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred EEEEcCCC-------hHHHHHHHHHhhcCCeEEEEe
Confidence 99876543 346778888999999998765
No 378
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=95.93 E-value=0.03 Score=57.27 Aligned_cols=100 Identities=15% Similarity=0.132 Sum_probs=71.2
Q ss_pred CeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhc-------cCCC--------CCeEEEEcchhhh
Q 039591 132 KKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATD-------FEFE--------KRMKFLTGDILQV 196 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~-------~~l~--------~~v~~~~~D~~~~ 196 (284)
++|..||+|.+|..-..+.. ..|..|+.+|.++++++.+++.+... +.++ .++++. .|.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a--~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--- 387 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSA--SKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSY--- 387 (714)
T ss_pred ceEEEECCchHHHHHHHHHH--hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH---
Confidence 58999999988876443332 36899999999999999887655421 1010 133332 222
Q ss_pred hccCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 197 KEKLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 197 ~~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
..+...|+|+.+..- ..+-|.++|.++-++++|+++|.-.+
T Consensus 388 -~~~~~aDlViEav~E--~l~~K~~vf~~l~~~~~~~~ilasnT 428 (714)
T TIGR02437 388 -AGFDNVDIVVEAVVE--NPKVKAAVLAEVEQHVREDAILASNT 428 (714)
T ss_pred -HHhcCCCEEEEcCcc--cHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 234789999998654 45789999999999999999988765
No 379
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=95.91 E-value=0.056 Score=48.74 Aligned_cols=86 Identities=14% Similarity=0.060 Sum_probs=57.9
Q ss_pred eEEEecCCCChHHHH-HHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcCc
Q 039591 133 KVAFVGSGPMPLTSI-VMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAAL 211 (284)
Q Consensus 133 ~VL~iGsGp~G~~ai-~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~~ 211 (284)
+|..||+|-+|.+-. .|.+ .|.+|+++|.+++..+.+.+. +. +.....+. + .....|+|+++..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~---~g~~V~~~d~~~~~~~~a~~~----g~----~~~~~~~~-~---~~~~aDlVilavp 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRS---LGHTVYGVSRRESTCERAIER----GL----VDEASTDL-S---LLKDCDLVILALP 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHC----CC----cccccCCH-h---HhcCCCEEEEcCC
Confidence 689999997776433 3443 577999999999988877653 21 11111222 1 2367899999976
Q ss_pred CCCCHHHHHHHHHHHHhccccCcEEE
Q 039591 212 VGMSKEEKMKIIRHIRKYMKDGGILL 237 (284)
Q Consensus 212 ~~~~~~~k~~~l~~~~~~L~pGG~lv 237 (284)
. ..-.++++++...++++.++.
T Consensus 67 ~----~~~~~~~~~l~~~l~~~~ii~ 88 (279)
T PRK07417 67 I----GLLLPPSEQLIPALPPEAIVT 88 (279)
T ss_pred H----HHHHHHHHHHHHhCCCCcEEE
Confidence 4 333567888888888886554
No 380
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=95.90 E-value=0.092 Score=47.84 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=66.3
Q ss_pred cCCCCeEEEecC-CCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEE
Q 039591 128 VVQPKKVAFVGS-GPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCI 206 (284)
Q Consensus 128 ~~~~~~VL~iGs-Gp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V 206 (284)
..++++|+..|+ |++|..++.+|+ ..|.++++++.+++..+.++++ .. . .+... +..+....++.+|++
T Consensus 160 ~~~~~~vlI~g~~g~~g~~~~~la~--~~g~~vi~~~~~~~~~~~~~~~-~~-~----~~~~~--~~~~~v~~~~~~d~~ 229 (334)
T PRK13771 160 VKKGETVLVTGAGGGVGIHAIQVAK--ALGAKVIAVTSSESKAKIVSKY-AD-Y----VIVGS--KFSEEVKKIGGADIV 229 (334)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHHH-HH-H----hcCch--hHHHHHHhcCCCcEE
Confidence 367889999999 889999999998 3678999999999999888765 21 1 11111 221111122468999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+.+... ..+..+.+.|++||.++.-+
T Consensus 230 ld~~g~--------~~~~~~~~~l~~~G~~v~~g 255 (334)
T PRK13771 230 IETVGT--------PTLEESLRSLNMGGKIIQIG 255 (334)
T ss_pred EEcCCh--------HHHHHHHHHHhcCCEEEEEe
Confidence 976432 24567788899999988754
No 381
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.89 E-value=0.02 Score=48.78 Aligned_cols=113 Identities=14% Similarity=0.090 Sum_probs=69.1
Q ss_pred HHhhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHH----HHHHHHH-hhccCCCCCeEEEEcchhhhh
Q 039591 123 LKENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAAN----NVARRIV-ATDFEFEKRMKFLTGDILQVK 197 (284)
Q Consensus 123 l~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~----~~A~~~~-~~~~~l~~~v~~~~~D~~~~~ 197 (284)
|...+.+++.+|+|+=-| .|+.+..++....+.+.|+++-.++... ...+.+. .+.. .-.+++.+-.+...+.
T Consensus 41 L~FaGlkpg~tVid~~PG-gGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~-~~aN~e~~~~~~~A~~ 118 (238)
T COG4798 41 LAFAGLKPGATVIDLIPG-GGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP-VYANVEVIGKPLVALG 118 (238)
T ss_pred eEEeccCCCCEEEEEecC-CccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh-hhhhhhhhCCcccccC
Confidence 344466899999999999 9999999998656777888886554411 1111110 0001 1133444444443322
Q ss_pred ccCCCccEEEEc--------CcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 198 EKLGEYDCIFLA--------ALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 198 ~~l~~fD~V~~~--------~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
..+..|+++.+ ..++ ...-.++...+.+.|||||++++..
T Consensus 119 -~pq~~d~~~~~~~yhdmh~k~i~--~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 119 -APQKLDLVPTAQNYHDMHNKNIH--PATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred -CCCcccccccchhhhhhhccccC--cchHHHHHHHHHHhcCCCcEEEEEe
Confidence 22455655542 2222 3445788999999999999998866
No 382
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.87 E-value=0.045 Score=49.56 Aligned_cols=98 Identities=13% Similarity=0.124 Sum_probs=56.5
Q ss_pred CeEEEecCCCChHHHH-HHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc-CCCccEEEEc
Q 039591 132 KKVAFVGSGPMPLTSI-VMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK-LGEYDCIFLA 209 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai-~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~-l~~fD~V~~~ 209 (284)
.+|+.+|+|.+|.... .|++ .|..|+.++. ++.++..++.--..........+ .........+ .+.+|+||++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~---~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~vila 75 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLE---AGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVV-PGPVITDPEELTGPFDLVILA 75 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHH---CCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEe-cceeecCHHHccCCCCEEEEE
Confidence 3799999998887543 4554 5788999999 76666544321000000011111 1111110112 2679999988
Q ss_pred CcCCCCHHHHHHHHHHHHhccccCcEEEE
Q 039591 210 ALVGMSKEEKMKIIRHIRKYMKDGGILLV 238 (284)
Q Consensus 210 ~~~~~~~~~k~~~l~~~~~~L~pGG~lv~ 238 (284)
.... .-..+++.+.+.++++..++.
T Consensus 76 vk~~----~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 76 VKAY----QLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred eccc----CHHHHHHHHHhhcCCCCEEEE
Confidence 6542 236778888888888876653
No 383
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=95.84 E-value=0.0087 Score=53.73 Aligned_cols=97 Identities=15% Similarity=0.122 Sum_probs=73.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
..+..++|+||| -|- .+.. .|...+++.|++...+..|++. + ......+|+...+.....||.++.
T Consensus 44 ~~gsv~~d~gCG-ngk---y~~~--~p~~~~ig~D~c~~l~~~ak~~----~----~~~~~~ad~l~~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 44 PTGSVGLDVGCG-NGK---YLGV--NPLCLIIGCDLCTGLLGGAKRS----G----GDNVCRADALKLPFREESFDAALS 109 (293)
T ss_pred CCcceeeecccC-Ccc---cCcC--CCcceeeecchhhhhccccccC----C----CceeehhhhhcCCCCCCccccchh
Confidence 447789999999 552 2222 4778899999999998887764 2 114566888877666688999988
Q ss_pred cCcCCCC--HHHHHHHHHHHHhccccCcEEEEE
Q 039591 209 AALVGMS--KEEKMKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 209 ~~~~~~~--~~~k~~~l~~~~~~L~pGG~lv~~ 239 (284)
-+..++. ...+..+++++.+.++|||..++-
T Consensus 110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 110 IAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 7766442 356789999999999999986653
No 384
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=95.83 E-value=0.027 Score=55.19 Aligned_cols=101 Identities=19% Similarity=0.178 Sum_probs=68.4
Q ss_pred CCCeEEEecCCCChHHH-HHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhc-------cCCC--------CCeEEEEcch
Q 039591 130 QPKKVAFVGSGPMPLTS-IVMAKNHLKATHFDNFDIDEAANNVARRIVATD-------FEFE--------KRMKFLTGDI 193 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~a-i~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~-------~~l~--------~~v~~~~~D~ 193 (284)
+-++|..||+|.+|..- ..+++ .|..|+.+|.+++.++.+++.+++. |.++ .++++ ..|.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~---aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~-~~~~ 79 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAAS---AGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP-VTDL 79 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE-eCCH
Confidence 44689999999888543 33444 6889999999999999876543211 1110 12333 2333
Q ss_pred hhhhccCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 194 LQVKEKLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 194 ~~~~~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
. ++...|+||.+..- ..+-|..+|.++.+.++|+.+|...+
T Consensus 80 ~----~l~~aDlVIEav~E--~~~vK~~vf~~l~~~~~~~~IlasnT 120 (503)
T TIGR02279 80 H----ALADAGLVIEAIVE--NLEVKKALFAQLEELCPADTIIASNT 120 (503)
T ss_pred H----HhCCCCEEEEcCcC--cHHHHHHHHHHHHhhCCCCeEEEECC
Confidence 2 23579999998653 34678999999998888887766444
No 385
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=95.82 E-value=0.078 Score=49.58 Aligned_cols=105 Identities=18% Similarity=0.173 Sum_probs=69.1
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCcc
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEYD 204 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~fD 204 (284)
..++++|+..|+|++|..++.+|+ . .|. +|+++|.+++..+.+++. | . ..+.....+..+....+ +.+|
T Consensus 174 ~~~g~~vlI~g~g~vg~~~~~~a~-~-~G~~~vi~~~~~~~~~~~~~~~----g-~-~~v~~~~~~~~~~i~~~~~~~~d 245 (375)
T cd08282 174 VQPGDTVAVFGAGPVGLMAAYSAI-L-RGASRVYVVDHVPERLDLAESI----G-A-IPIDFSDGDPVEQILGLEPGGVD 245 (375)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH-H-cCCCEEEEECCCHHHHHHHHHc----C-C-eEeccCcccHHHHHHHhhCCCCC
Confidence 367889999999999999999998 3 455 799999999998887764 3 1 11222122222211111 4699
Q ss_pred EEEEcCcCCC----CHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGM----SKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~----~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+|+....... ....+...+..+.+.++++|.++..+
T Consensus 246 ~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g 285 (375)
T cd08282 246 RAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVG 285 (375)
T ss_pred EEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEe
Confidence 9998654310 00123456888899999999997644
No 386
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=95.76 E-value=0.046 Score=49.78 Aligned_cols=98 Identities=19% Similarity=0.242 Sum_probs=65.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcE-EEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhh-hccCCCccEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATH-FDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQV-KEKLGEYDCI 206 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~-V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~-~~~l~~fD~V 206 (284)
.++.+||..|+|.+|..++.+|+ ..|.+ |++++.+++..+.+++. + .+..+.....+.... ....+.+|++
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~--~~G~~~v~~~~~~~~~~~~~~~~----g-~~~~~~~~~~~~~~~~~~~~~~vd~v 230 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLK--LNGASRVTVAEPNEEKLELAKKL----G-ATETVDPSREDPEAQKEDNPYGFDVV 230 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--HcCCcEEEEECCCHHHHHHHHHh----C-CeEEecCCCCCHHHHHHhcCCCCcEE
Confidence 67889999999888888888998 35666 89999999988887553 2 111111111111110 1122579999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+..... ...+..+.+.|+++|+++..+
T Consensus 231 ~~~~~~-------~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 231 IEATGV-------PKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred EECCCC-------hHHHHHHHHHHhcCCEEEEEe
Confidence 977543 356777889999999998765
No 387
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=95.75 E-value=0.15 Score=49.87 Aligned_cols=102 Identities=17% Similarity=0.212 Sum_probs=63.6
Q ss_pred CeEEEecCCCChHHH-HHHHhhcCCCcEEEEEeCCHHHHHHHHHHH-------hhccC--C--CCCeEEEEcchhhhhcc
Q 039591 132 KKVAFVGSGPMPLTS-IVMAKNHLKATHFDNFDIDEAANNVARRIV-------ATDFE--F--EKRMKFLTGDILQVKEK 199 (284)
Q Consensus 132 ~~VL~iGsGp~G~~a-i~la~~~~~~~~V~~vDis~~~~~~A~~~~-------~~~~~--l--~~~v~~~~~D~~~~~~~ 199 (284)
++|.+||+|.+|..- ..+++ .|..|+.+|.+++..+...+.. ..+.. + ..++++ ..|..+ .
T Consensus 5 ~kIavIG~G~MG~~iA~~la~---~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~-~~~~~e---a 77 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLL---AGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF-CASLAE---A 77 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe-eCCHHH---H
Confidence 589999999888653 33444 6789999999999987654321 11100 0 012333 233322 2
Q ss_pred CCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEeccc
Q 039591 200 LGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSAKG 243 (284)
Q Consensus 200 l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~~g 243 (284)
+...|+|+.+..- ..+-|..++..+.+.++|+.+ +..+..|
T Consensus 78 ~~~aD~Vieavpe--~~~vk~~l~~~l~~~~~~~~i-I~SsTsg 118 (495)
T PRK07531 78 VAGADWIQESVPE--RLDLKRRVLAEIDAAARPDAL-IGSSTSG 118 (495)
T ss_pred hcCCCEEEEcCcC--CHHHHHHHHHHHHhhCCCCcE-EEEcCCC
Confidence 3679999988654 234578889888888887754 4444444
No 388
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.73 E-value=0.07 Score=46.68 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=65.0
Q ss_pred CCCCeEEEecCCCChHHHHH-HHhhcCCCcEEEEE--eCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccE
Q 039591 129 VQPKKVAFVGSGPMPLTSIV-MAKNHLKATHFDNF--DIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDC 205 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~-la~~~~~~~~V~~v--Dis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~ 205 (284)
..+.+||.||+|..+.--+. |.+ .|++|+.+ +++++..+.++ . .+++++..+... .++..+++
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~---~gA~VtVVap~i~~el~~l~~----~-----~~i~~~~r~~~~--~dl~g~~L 88 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLK---KGCYVYILSKKFSKEFLDLKK----Y-----GNLKLIKGNYDK--EFIKDKHL 88 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHh---CCCEEEEEcCCCCHHHHHHHh----C-----CCEEEEeCCCCh--HHhCCCcE
Confidence 46789999999977766443 333 56776666 88888765433 1 468888776542 34578999
Q ss_pred EEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEE-eccchhhhcCCCC
Q 039591 206 IFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVR-SAKGARAFLYPVV 252 (284)
Q Consensus 206 V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~-~~~g~~~~lyp~v 252 (284)
||.+..- .++=+.+++..+.-+.++.. +......|.+|.+
T Consensus 89 ViaATdD-------~~vN~~I~~~a~~~~~lvn~vd~p~~~dFi~PAi 129 (223)
T PRK05562 89 IVIATDD-------EKLNNKIRKHCDRLYKLYIDCSDYKKGLCIIPYQ 129 (223)
T ss_pred EEECCCC-------HHHHHHHHHHHHHcCCeEEEcCCcccCeEEeeeE
Confidence 9988654 44445555555554544443 3334455776653
No 389
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.72 E-value=0.089 Score=48.21 Aligned_cols=100 Identities=8% Similarity=0.086 Sum_probs=56.0
Q ss_pred CCCeEEEecCCCChHHH-HHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 130 QPKKVAFVGSGPMPLTS-IVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~a-i~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
...+|+.||+|.+|..- ..|++ .|..|+.+..++. +..++..-..........+....+.......+.||+|++
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~---~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil 78 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLAR---AGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLV 78 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHH---CCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEE
Confidence 34689999999888653 33444 5788999988763 222221101000011111111111111122368999999
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEE
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLV 238 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~ 238 (284)
+.-.... .++++.+...+++++.++.
T Consensus 79 avK~~~~----~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 79 GLKTTAN----ALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred EecCCCh----HhHHHHHhhhcCCCCEEEE
Confidence 8654222 5678888888999987654
No 390
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=95.65 E-value=0.12 Score=46.34 Aligned_cols=96 Identities=11% Similarity=0.171 Sum_probs=66.0
Q ss_pred CCCCeEEEecC-CCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC-CCccEE
Q 039591 129 VQPKKVAFVGS-GPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL-GEYDCI 206 (284)
Q Consensus 129 ~~~~~VL~iGs-Gp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l-~~fD~V 206 (284)
.++++||..|+ |++|..++.+|+ ..|.+|+++..+++..+.+++. | . +.+-....+..+....+ +++|+|
T Consensus 141 ~~g~~vlV~ga~g~~g~~~~~~a~--~~g~~v~~~~~~~~~~~~~~~~----g-~-~~~~~~~~~~~~~i~~~~~~~d~v 212 (320)
T cd08243 141 QPGDTLLIRGGTSSVGLAALKLAK--ALGATVTATTRSPERAALLKEL----G-A-DEVVIDDGAIAEQLRAAPGGFDKV 212 (320)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHhc----C-C-cEEEecCccHHHHHHHhCCCceEE
Confidence 67889999996 889999999998 4678999999999887777543 3 1 11111122222211122 569999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+.... ...+..+.+.++++|+++..+
T Consensus 213 l~~~~--------~~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 213 LELVG--------TATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred EECCC--------hHHHHHHHHHhccCCEEEEEc
Confidence 96543 235777889999999998765
No 391
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=95.65 E-value=0.083 Score=48.36 Aligned_cols=99 Identities=21% Similarity=0.251 Sum_probs=65.9
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcE-EEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCcc
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATH-FDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEYD 204 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~-V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~fD 204 (284)
..++.+||..|+|.+|..++.+|+ ..|.+ |++++.+++..+.+++. + ...-+........+..... ..+|
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~--~~G~~~v~~~~~~~~~~~~l~~~----g-~~~~~~~~~~~~~~~~~~~~~~~~d 229 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLK--ILGAKRVIAVDIDDEKLAVAREL----G-ADDTINPKEEDVEKVRELTEGRGAD 229 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH--HcCCCEEEEEcCCHHHHHHHHHc----C-CCEEecCccccHHHHHHHhCCCCCC
Confidence 367789999999988999999998 35676 99999998887776543 2 1111222111111111111 3599
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+|+.+... ...+..+.+.|+++|+++..+
T Consensus 230 ~vld~~g~-------~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 230 LVIEAAGS-------PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred EEEECCCC-------HHHHHHHHHHhhcCCEEEEEc
Confidence 99977432 346778889999999988765
No 392
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=95.63 E-value=0.073 Score=47.33 Aligned_cols=97 Identities=12% Similarity=0.054 Sum_probs=64.7
Q ss_pred CCCCeEEEec-CCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc---CCCcc
Q 039591 129 VQPKKVAFVG-SGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK---LGEYD 204 (284)
Q Consensus 129 ~~~~~VL~iG-sGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~---l~~fD 204 (284)
.++.+|+..| +|++|..++.+++ ..|.+|++++.+++..+.+++. | ...-+.....+..+.... -..+|
T Consensus 135 ~~g~~vlI~g~~g~~g~~~~~~a~--~~g~~v~~~~~~~~~~~~~~~~----g-~~~~~~~~~~~~~~~~~~~~~~~~~d 207 (320)
T cd05286 135 KPGDTVLVHAAAGGVGLLLTQWAK--ALGATVIGTVSSEEKAELARAA----G-ADHVINYRDEDFVERVREITGGRGVD 207 (320)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHH--HcCCEEEEEcCCHHHHHHHHHC----C-CCEEEeCCchhHHHHHHHHcCCCCee
Confidence 6788999999 6889999999998 3678999999999988777543 3 111111111122211111 14699
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+|+..... .....+.+.|+++|.++..+
T Consensus 208 ~vl~~~~~--------~~~~~~~~~l~~~g~~v~~g 235 (320)
T cd05286 208 VVYDGVGK--------DTFEGSLDSLRPRGTLVSFG 235 (320)
T ss_pred EEEECCCc--------HhHHHHHHhhccCcEEEEEe
Confidence 99965432 24566788999999988654
No 393
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=95.56 E-value=0.1 Score=47.78 Aligned_cols=99 Identities=16% Similarity=0.220 Sum_probs=66.7
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCcE-EEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh---ccCCCc
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKATH-FDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK---EKLGEY 203 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~-V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~---~~l~~f 203 (284)
..++.+||..|+|..|..++.+|+ ..|.+ |++++.+++..+.+++. + ...-+.....+..+.. ..-..+
T Consensus 163 ~~~g~~VlV~g~g~vg~~~~~la~--~~g~~~v~~~~~s~~~~~~~~~~----g-~~~~~~~~~~~~~~~i~~~~~~~~v 235 (343)
T cd08235 163 IKPGDTVLVIGAGPIGLLHAMLAK--ASGARKVIVSDLNEFRLEFAKKL----G-ADYTIDAAEEDLVEKVRELTDGRGA 235 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH--HcCCcEEEEECCCHHHHHHHHHh----C-CcEEecCCccCHHHHHHHHhCCcCC
Confidence 367889999999888998888998 36777 99999999988877543 3 1111111112221111 111459
Q ss_pred cEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 204 DCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 204 D~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+|+..... ...+..+.+.|+++|+++..+
T Consensus 236 d~vld~~~~-------~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 236 DVVIVATGS-------PEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred CEEEECCCC-------hHHHHHHHHHhhcCCEEEEEe
Confidence 999976543 346777888999999998755
No 394
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=95.54 E-value=0.19 Score=47.63 Aligned_cols=101 Identities=13% Similarity=0.247 Sum_probs=62.1
Q ss_pred eEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhcc--CCC-----CCeEEEE-cchhhhhccCCCcc
Q 039591 133 KVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDF--EFE-----KRMKFLT-GDILQVKEKLGEYD 204 (284)
Q Consensus 133 ~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~--~l~-----~~v~~~~-~D~~~~~~~l~~fD 204 (284)
+|..||.|-+|+....+.. .|..|+++|+|++.++..++...... ++. .+.++.. .|..+ .....|
T Consensus 2 kI~VIGlGyvGl~~A~~lA---~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~---~~~~ad 75 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA---QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNE---AYRDAD 75 (388)
T ss_pred EEEEECCCHHHHHHHHHHH---hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhh---hhcCCC
Confidence 6899999988876554443 36889999999999998876321100 000 1122221 11211 125689
Q ss_pred EEEEcCcCCCC-------HHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGMS-------KEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~~-------~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+|+.+.+.... ...-..+.+.+.+ +++|.+++..+
T Consensus 76 ~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~S 117 (388)
T PRK15057 76 YVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKS 117 (388)
T ss_pred EEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEee
Confidence 99988653211 1233566677777 78888888777
No 395
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=95.53 E-value=0.11 Score=46.95 Aligned_cols=96 Identities=9% Similarity=0.009 Sum_probs=64.5
Q ss_pred CCCeEEEecC-CCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCccEE
Q 039591 130 QPKKVAFVGS-GPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEYDCI 206 (284)
Q Consensus 130 ~~~~VL~iGs-Gp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~fD~V 206 (284)
.+++||..|+ |++|..++.+|+ ..|.+|++++.+++..+.+++. | ...-+.. ..+..+....+ +.+|+|
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~--~~g~~v~~~~~~~~~~~~~~~~----g-~~~v~~~-~~~~~~~~~~~~~~~~d~v 217 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILA--KLGYEVVASTGKADAADYLKKL----G-AKEVIPR-EELQEESIKPLEKQRWAGA 217 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHH--HCCCeEEEEecCHHHHHHHHHc----C-CCEEEcc-hhHHHHHHHhhccCCcCEE
Confidence 4579999998 889999999998 3578999999999988877653 3 1111111 11111111111 469999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
+.... ...++...+.|+++|+++..+.
T Consensus 218 ld~~g--------~~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 218 VDPVG--------GKTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred EECCc--------HHHHHHHHHHhhcCCEEEEEee
Confidence 86543 2356778889999999988763
No 396
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=95.47 E-value=0.14 Score=46.16 Aligned_cols=97 Identities=13% Similarity=0.081 Sum_probs=65.8
Q ss_pred CCCCeEEEec-CCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC---CCcc
Q 039591 129 VQPKKVAFVG-SGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL---GEYD 204 (284)
Q Consensus 129 ~~~~~VL~iG-sGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l---~~fD 204 (284)
.++.+|+..| +|++|..++.+|+ ..|.+|++++.+++..+.+++. + ...-+.....+..+..... ..+|
T Consensus 141 ~~~~~vlI~g~~~~~g~~~~~la~--~~g~~v~~~~~~~~~~~~~~~~----g-~~~~~~~~~~~~~~~~~~~~~~~~~d 213 (324)
T cd08244 141 TPGDVVLVTAAAGGLGSLLVQLAK--AAGATVVGAAGGPAKTALVRAL----G-ADVAVDYTRPDWPDQVREALGGGGVT 213 (324)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHc----C-CCEEEecCCccHHHHHHHHcCCCCce
Confidence 6788999999 6889999999998 3578999999999988877543 3 1111222222222211111 4699
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+|+..... .....+.+.|+++|+++..+
T Consensus 214 ~vl~~~g~--------~~~~~~~~~l~~~g~~v~~g 241 (324)
T cd08244 214 VVLDGVGG--------AIGRAALALLAPGGRFLTYG 241 (324)
T ss_pred EEEECCCh--------HhHHHHHHHhccCcEEEEEe
Confidence 99976442 23477788999999998765
No 397
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.45 E-value=0.13 Score=51.84 Aligned_cols=96 Identities=15% Similarity=0.096 Sum_probs=68.4
Q ss_pred CCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh--c--cCCCccEE
Q 039591 131 PKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK--E--KLGEYDCI 206 (284)
Q Consensus 131 ~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~--~--~l~~fD~V 206 (284)
..+|+.+|+|+.|.......+ ..+..++.+|.|++.++.+++. | ..++.||+.+.. . ..++.|.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~--~~g~~vvvID~d~~~v~~~~~~----g-----~~v~~GDat~~~~L~~agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLL--SSGVKMTVLDHDPDHIETLRKF----G-----MKVFYGDATRMDLLESAGAAKAEVL 468 (621)
T ss_pred cCcEEEEecChHHHHHHHHHH--hCCCCEEEEECCHHHHHHHHhc----C-----CeEEEEeCCCHHHHHhcCCCcCCEE
Confidence 468999999999987655443 2577899999999999988752 3 457789987642 1 23689998
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
++.... ++....+-...+.+.|.-.++.|..
T Consensus 469 vv~~~d----~~~n~~i~~~ar~~~p~~~iiaRa~ 499 (621)
T PRK03562 469 INAIDD----PQTSLQLVELVKEHFPHLQIIARAR 499 (621)
T ss_pred EEEeCC----HHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 877643 3333444445667788888888773
No 398
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.43 E-value=0.031 Score=53.08 Aligned_cols=60 Identities=17% Similarity=0.265 Sum_probs=50.6
Q ss_pred eEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhh
Q 039591 133 KVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQV 196 (284)
Q Consensus 133 ~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~ 196 (284)
.|||||+| +|+.+++.++ . .+-.|+++|.=.-|.+.||+...+ ++++++|+++.--..+.
T Consensus 69 ~vLdigtG-TGLLSmMAvr-a-gaD~vtA~EvfkPM~d~arkI~~k-ng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 69 FVLDIGTG-TGLLSMMAVR-A-GADSVTACEVFKPMVDLARKIMHK-NGMSDKINVINKRSTEV 128 (636)
T ss_pred EEEEccCC-ccHHHHHHHH-h-cCCeEEeehhhchHHHHHHHHHhc-CCCccceeeecccccee
Confidence 57999999 9999998887 2 456799999999999999999888 44899999987655543
No 399
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=95.43 E-value=0.14 Score=45.97 Aligned_cols=98 Identities=16% Similarity=0.086 Sum_probs=65.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcE-EEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc---cCCCcc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATH-FDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE---KLGEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~-V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~---~l~~fD 204 (284)
.++.+|+..|+|..|..++.+|+ ..|.+ |+++..+++..+.+++. + ...-+.-...+..+... ....+|
T Consensus 128 ~~~~~vlI~g~g~vg~~~~~la~--~~g~~~v~~~~~~~~~~~~~~~~----g-~~~~~~~~~~~~~~~l~~~~~~~~vd 200 (312)
T cd08269 128 RAGKTVAVIGAGFIGLLFLQLAA--AAGARRVIAIDRRPARLALAREL----G-ATEVVTDDSEAIVERVRELTGGAGAD 200 (312)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--HcCCcEEEEECCCHHHHHHHHHh----C-CceEecCCCcCHHHHHHHHcCCCCCC
Confidence 67889999999989999999998 35777 99999998888765543 3 11111111112211111 114699
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+++.+... ...+....+.|+++|.++..+
T Consensus 201 ~vld~~g~-------~~~~~~~~~~l~~~g~~~~~g 229 (312)
T cd08269 201 VVIEAVGH-------QWPLDLAGELVAERGRLVIFG 229 (312)
T ss_pred EEEECCCC-------HHHHHHHHHHhccCCEEEEEc
Confidence 99987543 346777888999999998765
No 400
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=95.43 E-value=0.095 Score=49.26 Aligned_cols=97 Identities=12% Similarity=0.077 Sum_probs=65.0
Q ss_pred CCCCeEEEecC-CCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEE-------c---------
Q 039591 129 VQPKKVAFVGS-GPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLT-------G--------- 191 (284)
Q Consensus 129 ~~~~~VL~iGs-Gp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~-------~--------- 191 (284)
.++++|+..|+ |++|..++.+|+ ..|.++++++.+++..+.++++-.. .-+.... .
T Consensus 192 ~~g~~vlV~ga~g~iG~a~~~lak--~~G~~vv~~~~s~~~~~~~~~~G~~-----~~i~~~~~~~~~~~~~~~~~~~~~ 264 (393)
T cd08246 192 KPGDNVLIWGASGGLGSMAIQLAR--AAGANPVAVVSSEEKAEYCRALGAE-----GVINRRDFDHWGVLPDVNSEAYTA 264 (393)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHH--HcCCeEEEEeCCHHHHHHHHHcCCC-----EEEcccccccccccccccchhhhh
Confidence 67889999997 889999999998 4678888999999999998774211 0011100 0
Q ss_pred ------chhhhhccC---C-CccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 192 ------DILQVKEKL---G-EYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 192 ------D~~~~~~~l---~-~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+..+....+ . .+|+|+..... ..+....+.++++|+++..+
T Consensus 265 ~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~--------~~~~~~~~~l~~~G~~v~~g 315 (393)
T cd08246 265 WTKEARRFGKAIWDILGGREDPDIVFEHPGR--------ATFPTSVFVCDRGGMVVICA 315 (393)
T ss_pred hhhccchHHHHHHHHhCCCCCCeEEEECCch--------HhHHHHHHHhccCCEEEEEc
Confidence 011111111 2 69999976431 24667788999999998764
No 401
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=95.42 E-value=0.1 Score=47.20 Aligned_cols=94 Identities=22% Similarity=0.168 Sum_probs=62.5
Q ss_pred CeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcCc
Q 039591 132 KKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAAL 211 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~~ 211 (284)
.+|..+|.|-+|-+-....+.......|++.|.+....+.|.++ | +.+. ...+.. .......|+|+++.+
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----g-v~d~---~~~~~~--~~~~~~aD~VivavP 73 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----G-VIDE---LTVAGL--AEAAAEADLVIVAVP 73 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----C-cccc---cccchh--hhhcccCCEEEEecc
Confidence 58999999977766444444233444578888888888777654 3 1111 112221 122367999999988
Q ss_pred CCCCHHHHHHHHHHHHhccccCcEEEEE
Q 039591 212 VGMSKEEKMKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 212 ~~~~~~~k~~~l~~~~~~L~pGG~lv~~ 239 (284)
+ ..-.++++++...|++|.+|.=.
T Consensus 74 i----~~~~~~l~~l~~~l~~g~iv~Dv 97 (279)
T COG0287 74 I----EATEEVLKELAPHLKKGAIVTDV 97 (279)
T ss_pred H----HHHHHHHHHhcccCCCCCEEEec
Confidence 7 44488999999999999988743
No 402
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.39 E-value=0.11 Score=51.63 Aligned_cols=95 Identities=11% Similarity=0.057 Sum_probs=66.1
Q ss_pred CeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh----ccCCCccEEE
Q 039591 132 KKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK----EKLGEYDCIF 207 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~----~~l~~fD~V~ 207 (284)
++|+.+|+|+.|.......+ ..+..|+.+|.|++.++.+++. ....+.||+.+.. ...+++|.++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~--~~g~~vvvId~d~~~~~~~~~~---------g~~~i~GD~~~~~~L~~a~i~~a~~vi 486 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLL--AAGIPLVVIETSRTRVDELRER---------GIRAVLGNAANEEIMQLAHLDCARWLL 486 (558)
T ss_pred CCEEEECCChHHHHHHHHHH--HCCCCEEEEECCHHHHHHHHHC---------CCeEEEcCCCCHHHHHhcCccccCEEE
Confidence 68999999999987655433 2578899999999998887642 2567889988632 1237899888
Q ss_pred EcCcCCCCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 208 LAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
.+... +.+...+... .+...|...++.|..
T Consensus 487 v~~~~---~~~~~~iv~~-~~~~~~~~~iiar~~ 516 (558)
T PRK10669 487 LTIPN---GYEAGEIVAS-AREKRPDIEIIARAH 516 (558)
T ss_pred EEcCC---hHHHHHHHHH-HHHHCCCCeEEEEEC
Confidence 76543 1222234444 456688889988763
No 403
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.39 E-value=0.088 Score=43.25 Aligned_cols=100 Identities=19% Similarity=0.287 Sum_probs=63.2
Q ss_pred eEEEecCCCChHHHHH-HHhhcCCCcEEEEEeCCHHHHHHHHHHHhh---ccC--CCCCeEEEEcchhhhhccCCCccEE
Q 039591 133 KVAFVGSGPMPLTSIV-MAKNHLKATHFDNFDIDEAANNVARRIVAT---DFE--FEKRMKFLTGDILQVKEKLGEYDCI 206 (284)
Q Consensus 133 ~VL~iGsGp~G~~ai~-la~~~~~~~~V~~vDis~~~~~~A~~~~~~---~~~--l~~~v~~~~~D~~~~~~~l~~fD~V 206 (284)
+|..+|+|..|..... ++. .|.+|+-+..+++.++.-++.-.. +++ +..++.+ ..|..+.. +..|+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~---~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~---~~ad~I 73 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD---NGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL---EDADII 73 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH---CTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH---TT-SEE
T ss_pred CEEEECcCHHHHHHHHHHHH---cCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh---CcccEE
Confidence 6899999976655333 443 678999999999887766654321 111 2235544 56665432 578999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEeccch
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSAKGA 244 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~~g~ 244 (284)
+++.+.. ....+++++.++++++-.++.-. +|+
T Consensus 74 iiavPs~----~~~~~~~~l~~~l~~~~~ii~~~-KG~ 106 (157)
T PF01210_consen 74 IIAVPSQ----AHREVLEQLAPYLKKGQIIISAT-KGF 106 (157)
T ss_dssp EE-S-GG----GHHHHHHHHTTTSHTT-EEEETS--SE
T ss_pred EecccHH----HHHHHHHHHhhccCCCCEEEEec-CCc
Confidence 9987652 23789999999998777776533 444
No 404
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.37 E-value=0.66 Score=40.34 Aligned_cols=113 Identities=17% Similarity=0.147 Sum_probs=65.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCC-cEEEEEeCCHHHHHHHHHHHhhcc---------------------------
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKA-THFDNFDIDEAANNVARRIVATDF--------------------------- 180 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~-~~V~~vDis~~~~~~A~~~~~~~~--------------------------- 180 (284)
..|-++-|-.|| .|+..-.+.-.+... ..|.+-|+|+++++.|++|+.-+.
T Consensus 50 ~~p~tLyDPCCG-~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl 128 (246)
T PF11599_consen 50 KGPYTLYDPCCG-SGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEAL 128 (246)
T ss_dssp -S-EEEEETT-T-TSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred CCCeeeeccCCC-ccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 566789999999 787666655422222 369999999999999998864221
Q ss_pred -------------CCCCCeEEEEcchhhhh-----ccCCCccEEEEcCcCC----C----CHHHHHHHHHHHHhccccCc
Q 039591 181 -------------EFEKRMKFLTGDILQVK-----EKLGEYDCIFLAALVG----M----SKEEKMKIIRHIRKYMKDGG 234 (284)
Q Consensus 181 -------------~l~~~v~~~~~D~~~~~-----~~l~~fD~V~~~~~~~----~----~~~~k~~~l~~~~~~L~pGG 234 (284)
+-.....+.++|+++.. ......|+|+.+-+.| | ....-..+++.+...|.+++
T Consensus 129 ~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~s 208 (246)
T PF11599_consen 129 ESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERS 208 (246)
T ss_dssp HHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-
T ss_pred HHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCc
Confidence 01123567788887632 1124579999986553 1 23456889999999997777
Q ss_pred EEEEEeccc
Q 039591 235 ILLVRSAKG 243 (284)
Q Consensus 235 ~lv~~~~~g 243 (284)
++++ +.++
T Consensus 209 VV~v-~~k~ 216 (246)
T PF11599_consen 209 VVAV-SDKG 216 (246)
T ss_dssp EEEE-EESS
T ss_pred EEEE-ecCC
Confidence 7777 5443
No 405
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.32 E-value=0.094 Score=39.96 Aligned_cols=87 Identities=17% Similarity=0.222 Sum_probs=53.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
..+++||.||+|+.|..-+.... ..|++|+.+..+. +..+ ..+++...... .++..+|+|+.
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll--~~gA~v~vis~~~---~~~~----------~~i~~~~~~~~---~~l~~~~lV~~ 66 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLL--EAGAKVTVISPEI---EFSE----------GLIQLIRREFE---EDLDGADLVFA 66 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHC--CCTBEEEEEESSE---HHHH----------TSCEEEESS-G---GGCTTESEEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHHH--hCCCEEEEECCch---hhhh----------hHHHHHhhhHH---HHHhhheEEEe
Confidence 36789999999987776555443 4779999998876 1111 24566555542 34678999998
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+... .++-+.+.+..+.-|+++...
T Consensus 67 at~d-------~~~n~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 67 ATDD-------PELNEAIYADARARGILVNVV 91 (103)
T ss_dssp -SS--------HHHHHHHHHHHHHTTSEEEET
T ss_pred cCCC-------HHHHHHHHHHHhhCCEEEEEC
Confidence 8754 334455555556566666544
No 406
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.31 E-value=0.12 Score=51.73 Aligned_cols=96 Identities=18% Similarity=0.130 Sum_probs=68.2
Q ss_pred CCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh--c--cCCCccEE
Q 039591 131 PKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK--E--KLGEYDCI 206 (284)
Q Consensus 131 ~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~--~--~l~~fD~V 206 (284)
..+|+.+|.|+.|.......+ ..+..++.+|.|++.++.+++. | ..++.||+.+.. . ..++.|.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~--~~g~~vvvID~d~~~v~~~~~~----g-----~~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLM--ANKMRITVLERDISAVNLMRKY----G-----YKVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred cCCEEEecCchHHHHHHHHHH--hCCCCEEEEECCHHHHHHHHhC----C-----CeEEEeeCCCHHHHHhcCCccCCEE
Confidence 368999999999987655433 2578899999999999987652 3 457789987632 1 23789988
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
+..... ++....+-...+.+.|...++.|..
T Consensus 469 v~~~~d----~~~n~~i~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 469 VITCNE----PEDTMKIVELCQQHFPHLHILARAR 499 (601)
T ss_pred EEEeCC----HHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 877653 2223334445667889999998873
No 407
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=95.29 E-value=0.12 Score=46.74 Aligned_cols=97 Identities=5% Similarity=-0.016 Sum_probs=65.2
Q ss_pred CCCCeEEEec-CCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcc-hhhhhc---cCCCc
Q 039591 129 VQPKKVAFVG-SGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGD-ILQVKE---KLGEY 203 (284)
Q Consensus 129 ~~~~~VL~iG-sGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D-~~~~~~---~l~~f 203 (284)
.++.+|+..| +|++|..++.+|+ ..|.+++.++.+++..+.+++. | ...-+.....| ..+... .-..+
T Consensus 139 ~~~~~vlI~ga~g~~g~~~~~~a~--~~g~~v~~~~~~~~~~~~~~~~----g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (334)
T PTZ00354 139 KKGQSVLIHAGASGVGTAAAQLAE--KYGAATIITTSSEEKVDFCKKL----A-AIILIRYPDEEGFAPKVKKLTGEKGV 211 (334)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHHc----C-CcEEEecCChhHHHHHHHHHhCCCCc
Confidence 6778999998 6889999999998 3678878899999988887653 3 11112221222 222111 11469
Q ss_pred cEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 204 DCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 204 D~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+++.+.. ...+..+.+.|+++|.++..+
T Consensus 212 d~~i~~~~--------~~~~~~~~~~l~~~g~~i~~~ 240 (334)
T PTZ00354 212 NLVLDCVG--------GSYLSETAEVLAVDGKWIVYG 240 (334)
T ss_pred eEEEECCc--------hHHHHHHHHHhccCCeEEEEe
Confidence 99997643 246677888999999998754
No 408
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=95.27 E-value=0.15 Score=46.49 Aligned_cols=89 Identities=13% Similarity=0.266 Sum_probs=58.9
Q ss_pred eEEEecCCCChHHH-HHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcCc
Q 039591 133 KVAFVGSGPMPLTS-IVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAAL 211 (284)
Q Consensus 133 ~VL~iGsGp~G~~a-i~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~~ 211 (284)
+|.+||+|.+|..- ..|++ .|.+|+++|.+++.++..++. +. .. ..+..+....+...|+|+++..
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~---~g~~V~~~dr~~~~~~~l~~~----g~--~~----~~s~~~~~~~~~~~dvIi~~vp 68 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAK---RGHDCVGYDHDQDAVKAMKED----RT--TG----VANLRELSQRLSAPRVVWVMVP 68 (298)
T ss_pred EEEEEcchHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHc----CC--cc----cCCHHHHHhhcCCCCEEEEEcC
Confidence 68999999777632 33444 678999999999987766542 21 11 1333333333456899998865
Q ss_pred CCCCHHHHHHHHHHHHhccccCcEEEE
Q 039591 212 VGMSKEEKMKIIRHIRKYMKDGGILLV 238 (284)
Q Consensus 212 ~~~~~~~k~~~l~~~~~~L~pGG~lv~ 238 (284)
.+ .-..+++.+...+++|.+++-
T Consensus 69 ~~----~~~~v~~~l~~~l~~g~ivid 91 (298)
T TIGR00872 69 HG----IVDAVLEELAPTLEKGDIVID 91 (298)
T ss_pred ch----HHHHHHHHHHhhCCCCCEEEE
Confidence 42 346778888889998865543
No 409
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=95.26 E-value=0.13 Score=45.83 Aligned_cols=97 Identities=16% Similarity=0.161 Sum_probs=64.9
Q ss_pred CCCCeEEEecC-CCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc---cCCCcc
Q 039591 129 VQPKKVAFVGS-GPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE---KLGEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGs-Gp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~---~l~~fD 204 (284)
.++.+|+..|+ |++|..++.+++ ..|.+|++++.+++..+.+++. + ...-+.....+..+... .-..+|
T Consensus 138 ~~~~~vli~g~~~~~g~~~~~~a~--~~g~~v~~~~~~~~~~~~~~~~----g-~~~~~~~~~~~~~~~i~~~~~~~~~d 210 (323)
T cd08241 138 QPGETVLVLGAAGGVGLAAVQLAK--ALGARVIAAASSEEKLALARAL----G-ADHVIDYRDPDLRERVKALTGGRGVD 210 (323)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHH--HhCCEEEEEeCCHHHHHHHHHc----C-CceeeecCCccHHHHHHHHcCCCCcE
Confidence 67889999998 889998888888 4678899999999888877543 3 11112222222222111 114699
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+++.+... .....+.+.++++|.++..+
T Consensus 211 ~v~~~~g~--------~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 211 VVYDPVGG--------DVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred EEEECccH--------HHHHHHHHhhccCCEEEEEc
Confidence 99865432 24556778899999988765
No 410
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=95.26 E-value=0.093 Score=49.60 Aligned_cols=73 Identities=15% Similarity=0.156 Sum_probs=55.4
Q ss_pred CeEEEecCCCChHHHHHH-HhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh---ccCCCccEEE
Q 039591 132 KKVAFVGSGPMPLTSIVM-AKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK---EKLGEYDCIF 207 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~l-a~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~---~~l~~fD~V~ 207 (284)
++||.||||-.|-.+... |+ ....+|+..|.+.+.++.+..... .++++++-|+.+.. .-+.++|+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~--~~d~~V~iAdRs~~~~~~i~~~~~------~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQ--NGDGEVTIADRSKEKCARIAELIG------GKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CcEEEECCchhHHHHHHHHHh--CCCceEEEEeCCHHHHHHHHhhcc------ccceeEEecccChHHHHHHHhcCCEEE
Confidence 589999999888877764 54 344899999999999988876632 37888888887642 1237789999
Q ss_pred EcCcC
Q 039591 208 LAALV 212 (284)
Q Consensus 208 ~~~~~ 212 (284)
.+++.
T Consensus 74 n~~p~ 78 (389)
T COG1748 74 NAAPP 78 (389)
T ss_pred EeCCc
Confidence 88765
No 411
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.23 E-value=0.078 Score=45.65 Aligned_cols=72 Identities=13% Similarity=0.189 Sum_probs=43.6
Q ss_pred CCCCeEEEecCCCChHHHHH-HHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIV-MAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~-la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
-.+++||.||+|..|...+. |.+ .|++|+.++.+ ..+...+.... ..+.+...+.. ..++..+|+|+
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~---~ga~V~VIs~~--~~~~l~~l~~~-----~~i~~~~~~~~--~~~l~~adlVi 75 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLK---YGAHIVVISPE--LTENLVKLVEE-----GKIRWKQKEFE--PSDIVDAFLVI 75 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH---CCCeEEEEcCC--CCHHHHHHHhC-----CCEEEEecCCC--hhhcCCceEEE
Confidence 46789999999988876543 443 56888888643 22222233222 24666544333 23457899999
Q ss_pred EcCcC
Q 039591 208 LAALV 212 (284)
Q Consensus 208 ~~~~~ 212 (284)
.+...
T Consensus 76 aaT~d 80 (202)
T PRK06718 76 AATND 80 (202)
T ss_pred EcCCC
Confidence 87654
No 412
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=95.23 E-value=0.011 Score=50.95 Aligned_cols=94 Identities=15% Similarity=0.180 Sum_probs=62.1
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
+.+.++||+|+| -|-.+..++- .=.+|.+.|.|..|..+-++. + .+++.. .+.....-+||+|.+
T Consensus 111 ~~~~~lLDlGAG-dGeit~~m~p---~feevyATElS~tMr~rL~kk----~-----ynVl~~--~ew~~t~~k~dli~c 175 (288)
T KOG3987|consen 111 QEPVTLLDLGAG-DGEITLRMAP---TFEEVYATELSWTMRDRLKKK----N-----YNVLTE--IEWLQTDVKLDLILC 175 (288)
T ss_pred CCCeeEEeccCC-Ccchhhhhcc---hHHHHHHHHhhHHHHHHHhhc----C-----Cceeee--hhhhhcCceeehHHH
Confidence 567899999999 8887777775 224689999999998876653 2 122111 111111135898876
Q ss_pred cCcCCCCHHHHHHHHHHHHhcccc-CcEEEE
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKD-GGILLV 238 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~p-GG~lv~ 238 (284)
-.+.... .+.-++++.++.+++| .|++++
T Consensus 176 lNlLDRc-~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 176 LNLLDRC-FDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred HHHHHhh-cChHHHHHHHHHHhccCCCcEEE
Confidence 5543211 2447899999999999 888775
No 413
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=95.22 E-value=0.15 Score=46.78 Aligned_cols=94 Identities=11% Similarity=0.043 Sum_probs=61.7
Q ss_pred cCCCCeEEEecC-CCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEc---chhhh-hccCCC
Q 039591 128 VVQPKKVAFVGS-GPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTG---DILQV-KEKLGE 202 (284)
Q Consensus 128 ~~~~~~VL~iGs-Gp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~---D~~~~-~~~l~~ 202 (284)
..++.+||..|+ |++|..++.+|+ ..|+++++++.++ ..+.+++ +| . + .+... +..+. ...-+.
T Consensus 175 ~~~g~~vlI~g~~g~ig~~~~~~a~--~~g~~vi~~~~~~-~~~~~~~----~g-~-~--~~~~~~~~~~~~~~~~~~~~ 243 (350)
T cd08274 175 VGAGETVLVTGASGGVGSALVQLAK--RRGAIVIAVAGAA-KEEAVRA----LG-A-D--TVILRDAPLLADAKALGGEP 243 (350)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHH--hcCCEEEEEeCch-hhHHHHh----cC-C-e--EEEeCCCccHHHHHhhCCCC
Confidence 367899999998 889999999998 3578888888654 5555543 23 1 1 11111 11110 111256
Q ss_pred ccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 203 YDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 203 fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+|+|+..... ..+..+.+.|+++|.++..+
T Consensus 244 ~d~vi~~~g~--------~~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 244 VDVVADVVGG--------PLFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred CcEEEecCCH--------HHHHHHHHHhccCCEEEEec
Confidence 9999976542 35677889999999998654
No 414
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.22 E-value=0.3 Score=46.53 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=63.1
Q ss_pred eEEEecCCCChHHHHH-HHhhcCCCcEEEEEeCCHHHHHHHHHHHhhc--cC--------C-CCCeEEEEcchhhhhccC
Q 039591 133 KVAFVGSGPMPLTSIV-MAKNHLKATHFDNFDIDEAANNVARRIVATD--FE--------F-EKRMKFLTGDILQVKEKL 200 (284)
Q Consensus 133 ~VL~iGsGp~G~~ai~-la~~~~~~~~V~~vDis~~~~~~A~~~~~~~--~~--------l-~~~v~~~~~D~~~~~~~l 200 (284)
+|.+||+|-+|..... |++ .|.+|+++|++++.++..++..... .+ . ..++++ ..|..+ ..
T Consensus 2 kI~vIGlG~~G~~lA~~La~---~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~-~~~~~~---~~ 74 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLAD---LGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRA-TTDYED---AI 74 (411)
T ss_pred EEEEECCCchhHHHHHHHHh---cCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE-ECCHHH---HH
Confidence 6899999988876443 444 6789999999999887654310000 00 0 012443 233332 13
Q ss_pred CCccEEEEcCcCCCC------HHHHHHHHHHHHhccccCcEEEEEe
Q 039591 201 GEYDCIFLAALVGMS------KEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 201 ~~fD~V~~~~~~~~~------~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
...|+||++...... ...-....+.+.+.+++|.+++..+
T Consensus 75 ~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 75 RDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred hhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 579999988654211 1234666778888999998888766
No 415
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=95.21 E-value=0.27 Score=43.87 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=75.0
Q ss_pred CCCCeEE-EecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC---CCcc
Q 039591 129 VQPKKVA-FVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL---GEYD 204 (284)
Q Consensus 129 ~~~~~VL-~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l---~~fD 204 (284)
+++..|| .--+|-.|+....|++ ..+.++++.--+.+..+.|+++ | ..+.|.+...|..+...+. ++.|
T Consensus 145 kpGhtVlvhaAAGGVGlll~Ql~r--a~~a~tI~~asTaeK~~~aken----G-~~h~I~y~~eD~v~~V~kiTngKGVd 217 (336)
T KOG1197|consen 145 KPGHTVLVHAAAGGVGLLLCQLLR--AVGAHTIATASTAEKHEIAKEN----G-AEHPIDYSTEDYVDEVKKITNGKGVD 217 (336)
T ss_pred CCCCEEEEEeccccHHHHHHHHHH--hcCcEEEEEeccHHHHHHHHhc----C-CcceeeccchhHHHHHHhccCCCCce
Confidence 7888886 4455547888888887 4788999999999999999987 3 3467899999988766554 6799
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+++..... +.++.-...|||+|.++-.+
T Consensus 218 ~vyDsvG~--------dt~~~sl~~Lk~~G~mVSfG 245 (336)
T KOG1197|consen 218 AVYDSVGK--------DTFAKSLAALKPMGKMVSFG 245 (336)
T ss_pred eeeccccc--------hhhHHHHHHhccCceEEEec
Confidence 99976543 45666777999999998655
No 416
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=95.19 E-value=0.064 Score=54.75 Aligned_cols=100 Identities=17% Similarity=0.099 Sum_probs=71.4
Q ss_pred CeEEEecCCCChHHHHH-HHhhcCCCcEEEEEeCCHHHHHHHHHHHhhc-------cCC--------CCCeEEEEcchhh
Q 039591 132 KKVAFVGSGPMPLTSIV-MAKNHLKATHFDNFDIDEAANNVARRIVATD-------FEF--------EKRMKFLTGDILQ 195 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~-la~~~~~~~~V~~vDis~~~~~~A~~~~~~~-------~~l--------~~~v~~~~~D~~~ 195 (284)
++|..||+|.+|..-.. +|. ..|..|+.+|.+++.++.+.+.+.+. +.+ -.++++. .|.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~--~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~-- 379 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTAT--KAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDY-- 379 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHH--HcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CCh--
Confidence 58999999998876444 332 26899999999999998887654321 111 1234432 332
Q ss_pred hhccCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 196 VKEKLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 196 ~~~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
..+...|+|+.+..- ..+-|.++|.++-++++|+.+|.-.+
T Consensus 380 --~~~~~adlViEav~E--~l~~K~~v~~~l~~~~~~~~ilasnT 420 (699)
T TIGR02440 380 --RGFKDVDIVIEAVFE--DLALKHQMVKDIEQECAAHTIFASNT 420 (699)
T ss_pred --HHhccCCEEEEeccc--cHHHHHHHHHHHHhhCCCCcEEEeCC
Confidence 234789999998654 35789999999999999999888655
No 417
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=95.18 E-value=0.13 Score=47.21 Aligned_cols=105 Identities=20% Similarity=0.177 Sum_probs=71.2
Q ss_pred CeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhc-cCCCCCeEEEEcchhhhh---------ccCC
Q 039591 132 KKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATD-FEFEKRMKFLTGDILQVK---------EKLG 201 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~-~~l~~~v~~~~~D~~~~~---------~~l~ 201 (284)
++|..||+|-+|-.-...+. ..|..|+..|+++++++.++..+.+. ..+..+-..-..+..... ..+.
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A--~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~ 81 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFA--LAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK 81 (307)
T ss_pred cEEEEEcccchhHHHHHHHh--hcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence 58999999988865444443 36689999999999999988766542 100011011111111110 1346
Q ss_pred CccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 202 EYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 202 ~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
..|+|+.+..- ..+-|.++|+++-++++|+.+|.-.+
T Consensus 82 ~~DlVIEAv~E--~levK~~vf~~l~~~~~~~aIlASNT 118 (307)
T COG1250 82 DADLVIEAVVE--DLELKKQVFAELEALAKPDAILASNT 118 (307)
T ss_pred cCCEEEEeccc--cHHHHHHHHHHHHhhcCCCcEEeecc
Confidence 78999998654 45789999999999999999998765
No 418
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=95.17 E-value=0.15 Score=46.26 Aligned_cols=97 Identities=14% Similarity=0.151 Sum_probs=64.7
Q ss_pred CCCCeEEEec-CCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCccE
Q 039591 129 VQPKKVAFVG-SGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEYDC 205 (284)
Q Consensus 129 ~~~~~VL~iG-sGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~fD~ 205 (284)
.++++|+..| +|++|..++.+|+ ..|.+|++++.+++..+.+++. | ...-+.....+..+....+ +.+|+
T Consensus 138 ~~~~~vlI~ga~g~ig~~~~~~a~--~~g~~v~~~~~~~~~~~~~~~~----g-~~~v~~~~~~~~~~~~~~~~~~~vd~ 210 (329)
T cd08250 138 KSGETVLVTAAAGGTGQFAVQLAK--LAGCHVIGTCSSDEKAEFLKSL----G-CDRPINYKTEDLGEVLKKEYPKGVDV 210 (329)
T ss_pred CCCCEEEEEeCccHHHHHHHHHHH--HcCCeEEEEeCcHHHHHHHHHc----C-CceEEeCCCccHHHHHHHhcCCCCeE
Confidence 6788999999 6889999999998 3578899999998887777543 3 1111111111221111111 56899
Q ss_pred EEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+.+.. ...+..+.+.++++|.++..+
T Consensus 211 v~~~~g--------~~~~~~~~~~l~~~g~~v~~g 237 (329)
T cd08250 211 VYESVG--------GEMFDTCVDNLALKGRLIVIG 237 (329)
T ss_pred EEECCc--------HHHHHHHHHHhccCCeEEEEe
Confidence 997543 245677888999999988655
No 419
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=95.16 E-value=0.13 Score=42.50 Aligned_cols=90 Identities=16% Similarity=0.191 Sum_probs=56.9
Q ss_pred CeEEEecCCCChHHHH-HHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcC
Q 039591 132 KKVAFVGSGPMPLTSI-VMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAA 210 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai-~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~ 210 (284)
.+|-+||.|-+|..-. .|++ .|..|+++|++++..+...+. + ++ ...+..+.. +..|+|+++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~---~g~~v~~~d~~~~~~~~~~~~----g-----~~-~~~s~~e~~---~~~dvvi~~v 65 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAK---AGYEVTVYDRSPEKAEALAEA----G-----AE-VADSPAEAA---EQADVVILCV 65 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHH---TTTEEEEEESSHHHHHHHHHT----T-----EE-EESSHHHHH---HHBSEEEE-S
T ss_pred CEEEEEchHHHHHHHHHHHHh---cCCeEEeeccchhhhhhhHHh----h-----hh-hhhhhhhHh---hcccceEeec
Confidence 4799999997765322 2333 688999999999877665543 2 23 244554443 3569999886
Q ss_pred cCCCCHHHHHHHHHH--HHhccccCcEEEEEe
Q 039591 211 LVGMSKEEKMKIIRH--IRKYMKDGGILLVRS 240 (284)
Q Consensus 211 ~~~~~~~~k~~~l~~--~~~~L~pGG~lv~~~ 240 (284)
.. ...-.+++.. +...|++|.+++-.+
T Consensus 66 ~~---~~~v~~v~~~~~i~~~l~~g~iiid~s 94 (163)
T PF03446_consen 66 PD---DDAVEAVLFGENILAGLRPGKIIIDMS 94 (163)
T ss_dssp SS---HHHHHHHHHCTTHGGGS-TTEEEEE-S
T ss_pred cc---chhhhhhhhhhHHhhccccceEEEecC
Confidence 54 3455677777 888999888888655
No 420
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=95.16 E-value=0.1 Score=47.33 Aligned_cols=97 Identities=8% Similarity=0.044 Sum_probs=64.9
Q ss_pred CCCCeEEEec-CCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc---CCCcc
Q 039591 129 VQPKKVAFVG-SGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK---LGEYD 204 (284)
Q Consensus 129 ~~~~~VL~iG-sGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~---l~~fD 204 (284)
.++.+|+..| +|++|..++.+|+ ..|.+|++++.+++..+.+++. | ....+.....+..+.... -..+|
T Consensus 139 ~~g~~vlI~g~~g~ig~~~~~lak--~~G~~v~~~~~~~~~~~~~~~~----g-~~~~~~~~~~~~~~~~~~~~~~~~~d 211 (327)
T PRK10754 139 KPDEQFLFHAAAGGVGLIACQWAK--ALGAKLIGTVGSAQKAQRAKKA----G-AWQVINYREENIVERVKEITGGKKVR 211 (327)
T ss_pred CCCCEEEEEeCCcHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHHC----C-CCEEEcCCCCcHHHHHHHHcCCCCeE
Confidence 6778999885 7889999999998 3678999999999988877543 3 111122212222221111 14689
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+|+.+.. ...+.+..+.++++|+++..+
T Consensus 212 ~vl~~~~--------~~~~~~~~~~l~~~g~~v~~g 239 (327)
T PRK10754 212 VVYDSVG--------KDTWEASLDCLQRRGLMVSFG 239 (327)
T ss_pred EEEECCc--------HHHHHHHHHHhccCCEEEEEc
Confidence 8886543 235566788999999999765
No 421
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=95.16 E-value=0.2 Score=48.74 Aligned_cols=96 Identities=13% Similarity=0.180 Sum_probs=63.9
Q ss_pred eEEEecCCCChHH-HHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcCc
Q 039591 133 KVAFVGSGPMPLT-SIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAAL 211 (284)
Q Consensus 133 ~VL~iGsGp~G~~-ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~~ 211 (284)
+|.+||.|-+|.. +..|++ .|.+|+++|.+++.++...+.....+ ..++ ...+..+....+.+.|+|++...
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~---~G~~V~v~dr~~~~~~~l~~~~~~~g---~~i~-~~~s~~e~v~~l~~~d~Iil~v~ 75 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIAS---RGFKISVYNRTYEKTEEFVKKAKEGN---TRVK-GYHTLEELVNSLKKPRKVILLIK 75 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHhhhhcC---Ccce-ecCCHHHHHhcCCCCCEEEEEeC
Confidence 6899999977754 223443 67899999999999887765432212 1222 34566665555557898887754
Q ss_pred CCCCHHHHHHHHHHHHhccccCcEEEE
Q 039591 212 VGMSKEEKMKIIRHIRKYMKDGGILLV 238 (284)
Q Consensus 212 ~~~~~~~k~~~l~~~~~~L~pGG~lv~ 238 (284)
.+ ..-..+++.+...|++|-+++-
T Consensus 76 ~~---~~v~~vi~~l~~~L~~g~iIID 99 (470)
T PTZ00142 76 AG---EAVDETIDNLLPLLEKGDIIID 99 (470)
T ss_pred Ch---HHHHHHHHHHHhhCCCCCEEEE
Confidence 32 3446788889999998876653
No 422
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=95.14 E-value=0.13 Score=46.55 Aligned_cols=97 Identities=15% Similarity=0.124 Sum_probs=66.6
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEE-cchhhhhccC---CCcc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLT-GDILQVKEKL---GEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~-~D~~~~~~~l---~~fD 204 (284)
.++.+|+..|+|++|..++.+|+ ..|.+|++++.+++..+.+++. + ....+.... .+..+..... ..+|
T Consensus 159 ~~g~~vli~g~g~~g~~~~~~a~--~~G~~v~~~~~~~~~~~~~~~~----g-~~~~~~~~~~~~~~~~~~~~~~~~~~d 231 (336)
T cd08276 159 KPGDTVLVQGTGGVSLFALQFAK--AAGARVIATSSSDEKLERAKAL----G-ADHVINYRTTPDWGEEVLKLTGGRGVD 231 (336)
T ss_pred CCCCEEEEECCcHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHHc----C-CCEEEcCCcccCHHHHHHHHcCCCCCc
Confidence 67789998999999999999998 3678899999999988887763 2 111122211 2222211111 4699
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+++.... ...+..+.+.++++|.++..+
T Consensus 232 ~~i~~~~--------~~~~~~~~~~l~~~G~~v~~g 259 (336)
T cd08276 232 HVVEVGG--------PGTLAQSIKAVAPGGVISLIG 259 (336)
T ss_pred EEEECCC--------hHHHHHHHHhhcCCCEEEEEc
Confidence 9997643 235677889999999998755
No 423
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.12 E-value=0.1 Score=42.61 Aligned_cols=100 Identities=12% Similarity=0.082 Sum_probs=69.2
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.+..+.+|+||| -|-..+..++ . .-..-+++|++|-.+..+|-..-+.| +++...|..-|+.. .++..|..|++
T Consensus 71 n~~GklvDlGSG-DGRiVlaaar-~-g~~~a~GvELNpwLVaysrl~a~R~g-~~k~trf~RkdlwK--~dl~dy~~vvi 144 (199)
T KOG4058|consen 71 NPKGKLVDLGSG-DGRIVLAAAR-C-GLRPAVGVELNPWLVAYSRLHAWRAG-CAKSTRFRRKDLWK--VDLRDYRNVVI 144 (199)
T ss_pred CCCCcEEeccCC-Cceeehhhhh-h-CCCcCCceeccHHHHHHHHHHHHHHh-cccchhhhhhhhhh--ccccccceEEE
Confidence 444799999999 8976666665 2 22468999999999999997765545 67889999999864 35555654433
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEE
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLV 238 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~ 238 (284)
...- .-...+-..+..-|+.|..++.
T Consensus 145 Fgae----s~m~dLe~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 145 FGAE----SVMPDLEDKLRTELPANTRVVA 170 (199)
T ss_pred eehH----HHHhhhHHHHHhhCcCCCeEEE
Confidence 3211 1114455566668888888875
No 424
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.08 E-value=0.15 Score=45.95 Aligned_cols=96 Identities=13% Similarity=0.037 Sum_probs=57.8
Q ss_pred eEEEecCCCChHHHH-HHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcCc
Q 039591 133 KVAFVGSGPMPLTSI-VMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAAL 211 (284)
Q Consensus 133 ~VL~iGsGp~G~~ai-~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~~ 211 (284)
+|+.+|+|.+|.... .|++ .|.+|+.++.+++.++..++.--... ....... ........+.+.+|+|+++..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~---~g~~V~~~~r~~~~~~~~~~~g~~~~--~~~~~~~-~~~~~~~~~~~~~d~vila~k 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQ---AGHDVTLVARRGAHLDALNENGLRLE--DGEITVP-VLAADDPAELGPQDLVILAVK 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHh---CCCeEEEEECChHHHHHHHHcCCccc--CCceeec-ccCCCChhHcCCCCEEEEecc
Confidence 799999998886433 3444 57899999998887766554211000 0111110 000110112368999999865
Q ss_pred CCCCHHHHHHHHHHHHhccccCcEEEE
Q 039591 212 VGMSKEEKMKIIRHIRKYMKDGGILLV 238 (284)
Q Consensus 212 ~~~~~~~k~~~l~~~~~~L~pGG~lv~ 238 (284)
.. +...+++.+.+.+.++..++.
T Consensus 76 ~~----~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 76 AY----QLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred cc----cHHHHHHHHhhhcCCCCEEEE
Confidence 42 336788888888888876654
No 425
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=95.07 E-value=0.13 Score=46.89 Aligned_cols=95 Identities=12% Similarity=0.125 Sum_probs=62.9
Q ss_pred CCeEEEec-CCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCccEEE
Q 039591 131 PKKVAFVG-SGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEYDCIF 207 (284)
Q Consensus 131 ~~~VL~iG-sGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~fD~V~ 207 (284)
+.+||..| +|++|..++.+|+ ...|.+|+++..+++..+.+++. | ....+.. ..+.......+ +.+|+|+
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak-~~~G~~vi~~~~~~~~~~~l~~~----g-~~~~~~~-~~~~~~~i~~~~~~~vd~vl 221 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLAR-QLTGLTVIATASRPESQEWVLEL----G-AHHVIDH-SKPLKAQLEKLGLEAVSYVF 221 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHH-HhCCCEEEEEcCcHHHHHHHHHc----C-CCEEEEC-CCCHHHHHHHhcCCCCCEEE
Confidence 78999998 4779999999998 33388999999998887777543 3 1111111 11222211112 4699999
Q ss_pred EcCcCCCCHHHHHHHHHHHHhccccCcEEEEE
Q 039591 208 LAALVGMSKEEKMKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~ 239 (284)
..... ...+....+.|+++|+++..
T Consensus 222 ~~~~~-------~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 222 SLTHT-------DQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred EcCCc-------HHHHHHHHHHhccCCEEEEE
Confidence 64322 34577888899999999864
No 426
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=95.05 E-value=0.068 Score=50.51 Aligned_cols=58 Identities=24% Similarity=0.326 Sum_probs=49.5
Q ss_pred CCeEEEEcchhhhhccC--CCccEEE-EcCcCCCCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 184 KRMKFLTGDILQVKEKL--GEYDCIF-LAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 184 ~~v~~~~~D~~~~~~~l--~~fD~V~-~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
++++++++++.+..... +++|.++ +|..-.+++++-.+.++.+.+.++|||++++|++
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa 335 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSA 335 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeC
Confidence 89999999999987644 7899665 5666667778889999999999999999999995
No 427
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.02 E-value=0.33 Score=44.35 Aligned_cols=99 Identities=20% Similarity=0.234 Sum_probs=61.9
Q ss_pred CeEEEecCCCChHHHH-HHHhhcCCCcEEEEEeCCHHHHHHHHHHHh-------hccCCC--------CCeEEEEcchhh
Q 039591 132 KKVAFVGSGPMPLTSI-VMAKNHLKATHFDNFDIDEAANNVARRIVA-------TDFEFE--------KRMKFLTGDILQ 195 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai-~la~~~~~~~~V~~vDis~~~~~~A~~~~~-------~~~~l~--------~~v~~~~~D~~~ 195 (284)
.+|.+||+|.+|..-. .+++ .|.+|+.+|.+++.++.+++..+ ..|.++ .++++ ..|..+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~---~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~-~~~~~~ 78 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFAR---AGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV-TDSLAD 78 (308)
T ss_pred cEEEEECccHHHHHHHHHHHH---CCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE-ECcHHH
Confidence 4799999998886533 3444 57899999999998888765322 112110 12333 234332
Q ss_pred hhccCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 196 VKEKLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 196 ~~~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.+...|+|+.+.... ..-|..++..+.+..+++. ++..+
T Consensus 79 ---a~~~ad~Vi~avpe~--~~~k~~~~~~l~~~~~~~~-ii~ss 117 (308)
T PRK06129 79 ---AVADADYVQESAPEN--LELKRALFAELDALAPPHA-ILASS 117 (308)
T ss_pred ---hhCCCCEEEECCcCC--HHHHHHHHHHHHHhCCCcc-eEEEe
Confidence 235799999987542 2457788888877665554 44444
No 428
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.98 E-value=0.1 Score=50.88 Aligned_cols=73 Identities=11% Similarity=0.021 Sum_probs=50.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.++++|+.+|.|++|+++..+++ ..|+.|++.|..+...+.+ ++.| +.+..++.. ...+..+|+|+.
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~--~~G~~v~~~D~~~~~~~~l----~~~g-----~~~~~~~~~--~~~l~~~D~VV~ 76 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALT--RFGARPTVCDDDPDALRPH----AERG-----VATVSTSDA--VQQIADYALVVT 76 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHH--HCCCEEEEEcCCHHHHHHH----HhCC-----CEEEcCcch--HhHhhcCCEEEE
Confidence 46789999999999999997776 4678999999887654322 2222 455544322 122357899999
Q ss_pred cCcCCC
Q 039591 209 AALVGM 214 (284)
Q Consensus 209 ~~~~~~ 214 (284)
++.+..
T Consensus 77 SpGi~~ 82 (488)
T PRK03369 77 SPGFRP 82 (488)
T ss_pred CCCCCC
Confidence 887743
No 429
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=94.98 E-value=0.88 Score=40.45 Aligned_cols=109 Identities=15% Similarity=0.188 Sum_probs=74.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhh--cCCCcEEEEEeCCHHHHHHHHHHH-hhccCCCCCeEEEEcchhhhhccCCCc-c
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKN--HLKATHFDNFDIDEAANNVARRIV-ATDFEFEKRMKFLTGDILQVKEKLGEY-D 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~--~~~~~~V~~vDis~~~~~~A~~~~-~~~~~l~~~v~~~~~D~~~~~~~l~~f-D 204 (284)
..+...+|+|||..--+.+.+-.. .....+.+.+|+|...++-..+.+ .... +-.|.-+++|.......+.+. -
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~--~l~v~~l~~~~~~~La~~~~~~~ 154 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP--GLEVNALCGDYELALAELPRGGR 154 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC--CCeEeehhhhHHHHHhcccCCCe
Confidence 568899999999666666554331 112368999999999987655544 3333 345788889977654444222 2
Q ss_pred --EEEEcCcC-CCCHHHHHHHHHHHHhccccCcEEEEE
Q 039591 205 --CIFLAALV-GMSKEEKMKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 205 --~V~~~~~~-~~~~~~k~~~l~~~~~~L~pGG~lv~~ 239 (284)
.+|.-+.. ...+.+...++.++...|+||-.+++-
T Consensus 155 Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 155 RLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 33444433 456788899999999999999998863
No 430
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=94.97 E-value=0.47 Score=45.58 Aligned_cols=104 Identities=19% Similarity=0.278 Sum_probs=64.8
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhcc--CC-----CCCeEEEEcchhhhhccCC
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDF--EF-----EKRMKFLTGDILQVKEKLG 201 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~--~l-----~~~v~~~~~D~~~~~~~l~ 201 (284)
.++.+|.+||.|=+|+....... .+.+|+++|++++.++..++-..-.. ++ ..+..+ ..+.. ...
T Consensus 4 ~~~mkI~vIGlGyvGlpmA~~la---~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~-t~~~~----~~~ 75 (425)
T PRK15182 4 IDEVKIAIIGLGYVGLPLAVEFG---KSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKF-TSEIE----KIK 75 (425)
T ss_pred CCCCeEEEECcCcchHHHHHHHh---cCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeE-EeCHH----HHc
Confidence 35679999999988876544332 35899999999999988762211000 00 011222 22221 136
Q ss_pred CccEEEEcCcCCC------CHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 202 EYDCIFLAALVGM------SKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 202 ~fD~V~~~~~~~~------~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
..|++|++-+... .-..-....+.+.+.+++|.+++..+
T Consensus 76 ~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~S 120 (425)
T PRK15182 76 ECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYES 120 (425)
T ss_pred CCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEec
Confidence 7999998765421 11233444568889999999999877
No 431
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=94.95 E-value=0.15 Score=46.38 Aligned_cols=95 Identities=14% Similarity=0.115 Sum_probs=64.7
Q ss_pred CCeEEEec-CCCChHHHHHHHhhcCCC-cEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCccEE
Q 039591 131 PKKVAFVG-SGPMPLTSIVMAKNHLKA-THFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEYDCI 206 (284)
Q Consensus 131 ~~~VL~iG-sGp~G~~ai~la~~~~~~-~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~fD~V 206 (284)
+.+|+..| +|++|..++.+|+ . .| .+|++++.+++..+.+++. | ...-+... .+..+..... +.+|++
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~-~-~G~~~v~~~~~~~~~~~~~~~~----g-~~~~~~~~-~~~~~~i~~~~~~~~d~v 221 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAK-Q-LTGLTVIATASRPESIAWVKEL----G-ADHVINHH-QDLAEQLEALGIEPVDYI 221 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHH-H-cCCcEEEEEcCChhhHHHHHhc----C-CcEEEeCC-ccHHHHHHhhCCCCCCEE
Confidence 78999998 5779999999998 3 46 8999999999988887553 3 11111111 1222211111 469999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+.+... ...++.+.+.++++|.++..+
T Consensus 222 l~~~~~-------~~~~~~~~~~l~~~g~~v~~g 248 (336)
T cd08252 222 FCLTDT-------DQHWDAMAELIAPQGHICLIV 248 (336)
T ss_pred EEccCc-------HHHHHHHHHHhcCCCEEEEec
Confidence 866442 356778889999999998754
No 432
>PRK07340 ornithine cyclodeaminase; Validated
Probab=94.90 E-value=0.29 Score=44.82 Aligned_cols=95 Identities=9% Similarity=0.005 Sum_probs=62.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
..+.+|+.+|||..|...+.......+-.+|..++.+++..+...+.++.. .+.+...|..+. +...|+|+.
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~-----~~~~~~~~~~~a---v~~aDiVit 194 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL-----GPTAEPLDGEAI---PEAVDLVVT 194 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-----CCeeEECCHHHH---hhcCCEEEE
Confidence 567899999999888776665432345568999999988766554444331 233334455432 368999998
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+.... ..++.. .+|||..+...+
T Consensus 195 aT~s~------~Pl~~~---~~~~g~hi~~iG 217 (304)
T PRK07340 195 ATTSR------TPVYPE---AARAGRLVVAVG 217 (304)
T ss_pred ccCCC------CceeCc---cCCCCCEEEecC
Confidence 87653 234443 378998888765
No 433
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.89 E-value=0.16 Score=49.22 Aligned_cols=74 Identities=11% Similarity=-0.018 Sum_probs=49.1
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHH-HHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEA-ANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~-~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
..+++|+.+|+|+.|+.+..+.+ ..|.+|+.+|.++. ......+.+++ ..+++..++... ....+|+|+
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~--~~G~~V~~~d~~~~~~~~~~~~~l~~-----~gv~~~~~~~~~---~~~~~D~Vv 83 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALL--ELGARVTVVDDGDDERHRALAAILEA-----LGATVRLGPGPT---LPEDTDLVV 83 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCchhhhHHHHHHHHH-----cCCEEEECCCcc---ccCCCCEEE
Confidence 34679999999999998766554 36789999996653 32222233333 246777665432 124699999
Q ss_pred EcCcC
Q 039591 208 LAALV 212 (284)
Q Consensus 208 ~~~~~ 212 (284)
.+..+
T Consensus 84 ~s~Gi 88 (480)
T PRK01438 84 TSPGW 88 (480)
T ss_pred ECCCc
Confidence 88766
No 434
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=94.88 E-value=0.078 Score=48.71 Aligned_cols=97 Identities=12% Similarity=0.110 Sum_probs=63.1
Q ss_pred CCCCeEEEecC-CCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCccE
Q 039591 129 VQPKKVAFVGS-GPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEYDC 205 (284)
Q Consensus 129 ~~~~~VL~iGs-Gp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~fD~ 205 (284)
.++++||..|+ |++|..++.+|+ ..|.+|+++. +++..+.+++. | ...-+.....+..+....+ +.+|+
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~--~~G~~v~~~~-~~~~~~~~~~~----g-~~~v~~~~~~~~~~~l~~~~~~~~d~ 224 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAK--LAGYKVITTA-SPKNFDLVKSL----G-ADAVFDYHDPDVVEDIRAATGGKLRY 224 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHH--HcCCeEEEEE-CcccHHHHHhc----C-CCEEEECCCchHHHHHHHhcCCCeeE
Confidence 46789999995 789999999998 3678888877 66777666543 3 2122222222222211111 56999
Q ss_pred EEEcCcCCCCHHHHHHHHHHHHhcccc--CcEEEEEe
Q 039591 206 IFLAALVGMSKEEKMKIIRHIRKYMKD--GGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~~~~~k~~~l~~~~~~L~p--GG~lv~~~ 240 (284)
|+..... ...+....+.+++ ||+++..+
T Consensus 225 vl~~~g~-------~~~~~~~~~~l~~~~~g~~v~~g 254 (339)
T cd08249 225 ALDCIST-------PESAQLCAEALGRSGGGKLVSLL 254 (339)
T ss_pred EEEeecc-------chHHHHHHHHHhccCCCEEEEec
Confidence 9865432 2456788889999 99988754
No 435
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=94.86 E-value=1.1 Score=41.20 Aligned_cols=106 Identities=16% Similarity=0.224 Sum_probs=66.2
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHH---hhcc--------------------------
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIV---ATDF-------------------------- 180 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~---~~~~-------------------------- 180 (284)
..-+||.-||| +|-.+.-||. .|..+-|=|.|--|+=...=.+ +.-+
T Consensus 150 ~ki~iLvPGaG-lGRLa~dla~---~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~ 225 (369)
T KOG2798|consen 150 TKIRILVPGAG-LGRLAYDLAC---LGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISI 225 (369)
T ss_pred cCceEEecCCC-chhHHHHHHH---hcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccC
Confidence 35589999999 9999999997 3444444455555543332211 0000
Q ss_pred ---------CCCCCeEEEEcchhhhhccC---CCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 181 ---------EFEKRMKFLTGDILQVKEKL---GEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 181 ---------~l~~~v~~~~~D~~~~~~~l---~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.....+.+-.||..+..... +.||+|+.+-... .+.+-.+.++.+.+.|+|||+-+-.+
T Consensus 226 PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID-Ta~NileYi~tI~~iLk~GGvWiNlG 296 (369)
T KOG2798|consen 226 PDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID-TAHNILEYIDTIYKILKPGGVWINLG 296 (369)
T ss_pred ccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee-chHHHHHHHHHHHHhccCCcEEEecc
Confidence 00122333447766653322 4799998875442 34677899999999999999988544
No 436
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=94.86 E-value=0.32 Score=44.08 Aligned_cols=92 Identities=10% Similarity=0.081 Sum_probs=59.1
Q ss_pred cCCCCeEEEecC-CCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC-CCccE
Q 039591 128 VVQPKKVAFVGS-GPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL-GEYDC 205 (284)
Q Consensus 128 ~~~~~~VL~iGs-Gp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l-~~fD~ 205 (284)
..++++|+..|+ |++|..++.+|+ ..|.+|++++.+ +.++ .+| ...-+. ..+..+....+ +.+|+
T Consensus 160 ~~~g~~vlI~g~~g~vg~~~~~~a~--~~G~~v~~~~~~----~~~~----~~g-~~~~~~--~~~~~~~l~~~~~~~d~ 226 (325)
T cd08264 160 LGPGETVVVFGASGNTGIFAVQLAK--MMGAEVIAVSRK----DWLK----EFG-ADEVVD--YDEVEEKVKEITKMADV 226 (325)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHH--HcCCeEEEEeHH----HHHH----HhC-CCeeec--chHHHHHHHHHhCCCCE
Confidence 467899999997 999999999998 367888888632 3332 223 111111 11111111111 57999
Q ss_pred EEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+.... ...+....+.|+++|.++..+
T Consensus 227 vl~~~g--------~~~~~~~~~~l~~~g~~v~~g 253 (325)
T cd08264 227 VINSLG--------SSFWDLSLSVLGRGGRLVTFG 253 (325)
T ss_pred EEECCC--------HHHHHHHHHhhccCCEEEEEe
Confidence 986543 246778899999999999765
No 437
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=94.86 E-value=0.16 Score=46.49 Aligned_cols=95 Identities=18% Similarity=0.201 Sum_probs=60.3
Q ss_pred CCCeEEEec-CCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 130 QPKKVAFVG-SGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 130 ~~~~VL~iG-sGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
++++|+..| +|++|..++.+|+ ..|.+|+++..+ ...+.+++. + ....+.....+..+.....+.+|+++.
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~--~~G~~v~~~~~~-~~~~~~~~~----g-~~~~~~~~~~~~~~~l~~~~~vd~vi~ 233 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLK--AWGAHVTTTCST-DAIPLVKSL----G-ADDVIDYNNEDFEEELTERGKFDVILD 233 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHH--HCCCeEEEEeCc-chHHHHHHh----C-CceEEECCChhHHHHHHhcCCCCEEEE
Confidence 489999999 6889999999998 357788887744 444444432 3 111122111122222222357999997
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.... ..+..+.+.++++|+++..+
T Consensus 234 ~~g~--------~~~~~~~~~l~~~G~~v~~g 257 (350)
T cd08248 234 TVGG--------DTEKWALKLLKKGGTYVTLV 257 (350)
T ss_pred CCCh--------HHHHHHHHHhccCCEEEEec
Confidence 6442 25777889999999998754
No 438
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=94.84 E-value=0.2 Score=45.18 Aligned_cols=98 Identities=10% Similarity=0.025 Sum_probs=62.7
Q ss_pred cCCCCeEEEecC-CCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC---CCc
Q 039591 128 VVQPKKVAFVGS-GPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL---GEY 203 (284)
Q Consensus 128 ~~~~~~VL~iGs-Gp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l---~~f 203 (284)
..++.+||..|+ |.+|..++.+|+ ..|++++++.-+++..+.+++. | ...-+.....+..+....+ .++
T Consensus 137 ~~~g~~vlI~g~~g~ig~~~~~~a~--~~G~~v~~~~~~~~~~~~~~~~----g-~~~~~~~~~~~~~~~i~~~~~~~~~ 209 (324)
T cd08292 137 VKPGQWLIQNAAGGAVGKLVAMLAA--ARGINVINLVRRDAGVAELRAL----G-IGPVVSTEQPGWQDKVREAAGGAPI 209 (324)
T ss_pred CCCCCEEEEcccccHHHHHHHHHHH--HCCCeEEEEecCHHHHHHHHhc----C-CCEEEcCCCchHHHHHHHHhCCCCC
Confidence 367889999875 779999999998 3678888887777766665542 3 2111121111222111111 469
Q ss_pred cEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 204 DCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 204 D~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+|+..... ..+..+.+.|+++|+++..+
T Consensus 210 d~v~d~~g~--------~~~~~~~~~l~~~g~~v~~g 238 (324)
T cd08292 210 SVALDSVGG--------KLAGELLSLLGEGGTLVSFG 238 (324)
T ss_pred cEEEECCCC--------hhHHHHHHhhcCCcEEEEEe
Confidence 999976442 23467788999999998765
No 439
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.82 E-value=0.46 Score=43.77 Aligned_cols=106 Identities=23% Similarity=0.260 Sum_probs=66.1
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCC-cEEEEEeCCHHHH-HHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKA-THFDNFDIDEAAN-NVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCI 206 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~-~~V~~vDis~~~~-~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V 206 (284)
+.+.+|..||+|..|.+...+.. ..+- .++.-+|++++.+ ..+..+..... +..++.+..+|.. ++...|+|
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~-~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~-~~~~~~i~~~~~~----~~~~adiv 77 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALV-NQGIADELVIIDINKEKAEGDAMDLSHAVP-FTSPTKIYAGDYS----DCKDADLV 77 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCCCchhHHHHHHHHhhcc-ccCCeEEEeCCHH----HhCCCCEE
Confidence 56789999999988988766443 2222 3799999987754 55555544322 1134566555533 35789999
Q ss_pred EEcCcC----CCCHHH----HHHHHHHHHhccc---cCcEEEEEe
Q 039591 207 FLAALV----GMSKEE----KMKIIRHIRKYMK---DGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~----~~~~~~----k~~~l~~~~~~L~---pGG~lv~~~ 240 (284)
++.+.. ++...+ ...+++++.+.++ |.|++++.+
T Consensus 78 Iitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 78 VITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 998765 333322 2455555554443 688877655
No 440
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.81 E-value=0.13 Score=46.72 Aligned_cols=89 Identities=10% Similarity=0.069 Sum_probs=56.1
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
-.+++|+.+|.|.+|......++ ..|.+|+.++.+++..+.+.+. + ...+. ..+....+.++|+|+.
T Consensus 149 l~gk~v~IiG~G~iG~avA~~L~--~~G~~V~v~~R~~~~~~~~~~~----g-----~~~~~--~~~l~~~l~~aDiVin 215 (287)
T TIGR02853 149 IHGSNVMVLGFGRTGMTIARTFS--ALGARVFVGARSSADLARITEM----G-----LIPFP--LNKLEEKVAEIDIVIN 215 (287)
T ss_pred CCCCEEEEEcChHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHC----C-----Ceeec--HHHHHHHhccCCEEEE
Confidence 46789999999988877666555 2467999999999865554321 2 11111 1221223368999999
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEE
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILL 237 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv 237 (284)
..+.++ +-+...+.|+++++++
T Consensus 216 t~P~~i-------i~~~~l~~~k~~aliI 237 (287)
T TIGR02853 216 TIPALV-------LTADVLSKLPKHAVII 237 (287)
T ss_pred CCChHH-------hCHHHHhcCCCCeEEE
Confidence 865432 1133556788876555
No 441
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.78 E-value=0.24 Score=42.54 Aligned_cols=94 Identities=12% Similarity=0.054 Sum_probs=53.0
Q ss_pred CCCeEEEecCCCChHHHHH-HHhhcCCCcEEEEEeCC-------------------HHHHHHHHHHHhhccCCCCCeEEE
Q 039591 130 QPKKVAFVGSGPMPLTSIV-MAKNHLKATHFDNFDID-------------------EAANNVARRIVATDFEFEKRMKFL 189 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~-la~~~~~~~~V~~vDis-------------------~~~~~~A~~~~~~~~~l~~~v~~~ 189 (284)
...+|+.+|+|.+|..... |++ .+-.+++.+|.| ...++.+.+.+++++ ..-+++.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~--~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~v~i~~~ 96 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAG--AGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN-SDIQVTAL 96 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH--cCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC-CCCEEEEe
Confidence 4679999999977765444 444 233589999988 234445555555543 12334444
Q ss_pred Ecchhh--hhccCCCccEEEEcCcCCCCHHHHHHHHHHHHhc
Q 039591 190 TGDILQ--VKEKLGEYDCIFLAALVGMSKEEKMKIIRHIRKY 229 (284)
Q Consensus 190 ~~D~~~--~~~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~ 229 (284)
...+.. ....+..||+|+.+... .+.+..+-+.+.+.
T Consensus 97 ~~~i~~~~~~~~~~~~D~Vi~~~d~---~~~r~~l~~~~~~~ 135 (202)
T TIGR02356 97 KERVTAENLELLINNVDLVLDCTDN---FATRYLINDACVAL 135 (202)
T ss_pred hhcCCHHHHHHHHhCCCEEEECCCC---HHHHHHHHHHHHHc
Confidence 444322 11123789999987644 23334344444444
No 442
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.77 E-value=0.092 Score=42.37 Aligned_cols=98 Identities=10% Similarity=0.116 Sum_probs=55.6
Q ss_pred EEEecCCCChHHHHH-HHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcc-hhhhhccCCCccEEEEcCc
Q 039591 134 VAFVGSGPMPLTSIV-MAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGD-ILQVKEKLGEYDCIFLAAL 211 (284)
Q Consensus 134 VL~iGsGp~G~~ai~-la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D-~~~~~~~l~~fD~V~~~~~ 211 (284)
|+.+|+|.+|..-.. |++ .+.+|+.+...+ .++.-++.--..........+.... ........+.||+||++.-
T Consensus 1 I~I~G~GaiG~~~a~~L~~---~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ---AGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH---TTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHHH---CCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 688999977765433 333 788999999988 5554333211100000011111111 1110112378999999863
Q ss_pred CCCCHHHHHHHHHHHHhccccCcEEEEE
Q 039591 212 VGMSKEEKMKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 212 ~~~~~~~k~~~l~~~~~~L~pGG~lv~~ 239 (284)
. .+-..+++.+.+.++|++.+++-
T Consensus 77 a----~~~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 77 A----YQLEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp G----GGHHHHHHHHCTGEETTEEEEEE
T ss_pred c----cchHHHHHHHhhccCCCcEEEEE
Confidence 3 23367888999999999766543
No 443
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=94.74 E-value=0.23 Score=43.34 Aligned_cols=97 Identities=8% Similarity=0.029 Sum_probs=64.4
Q ss_pred CCCCeEEEec-CCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCC--CCCeEEEEcchhhhhccC---CC
Q 039591 129 VQPKKVAFVG-SGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEF--EKRMKFLTGDILQVKEKL---GE 202 (284)
Q Consensus 129 ~~~~~VL~iG-sGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l--~~~v~~~~~D~~~~~~~l---~~ 202 (284)
.++++|+..| +|++|..+..+++ ..|.+|++++.+++..+.+++. | . ...+.....+..+....+ ..
T Consensus 103 ~~g~~vlv~g~~~~~g~~~~~~a~--~~g~~v~~~~~~~~~~~~~~~~----g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (288)
T smart00829 103 RPGESVLIHAAAGGVGQAAIQLAQ--HLGAEVFATAGSPEKRDFLREL----G-IPDDHIFSSRDLSFADEILRATGGRG 175 (288)
T ss_pred CCCCEEEEecCCcHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHHc----C-CChhheeeCCCccHHHHHHHHhCCCC
Confidence 6788999998 6878988888888 3678999999999998887543 2 1 111222222322211111 46
Q ss_pred ccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 203 YDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 203 fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+|+++.... ...+....+.++++|.++..+
T Consensus 176 ~d~vi~~~~--------~~~~~~~~~~l~~~g~~v~~g 205 (288)
T smart00829 176 VDVVLNSLA--------GEFLDASLRCLAPGGRFVEIG 205 (288)
T ss_pred cEEEEeCCC--------HHHHHHHHHhccCCcEEEEEc
Confidence 898886543 124566778899999988655
No 444
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=94.73 E-value=0.19 Score=44.64 Aligned_cols=107 Identities=15% Similarity=0.113 Sum_probs=63.3
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH---HHhhccCCCCCeEEEEcchhhh---hccCCC-
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARR---IVATDFEFEKRMKFLTGDILQV---KEKLGE- 202 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~---~~~~~~~l~~~v~~~~~D~~~~---~~~l~~- 202 (284)
.+.+||++|+| +|+-.+..|. ..++.|+.-|.-.....+... +...++.++..+.+..-+..+. ......
T Consensus 86 ~~~~vlELGsG-tglvG~~aa~--~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~ 162 (248)
T KOG2793|consen 86 KYINVLELGSG-TGLVGILAAL--LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNP 162 (248)
T ss_pred cceeEEEecCC-ccHHHHHHHH--HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCc
Confidence 46689999999 9999988887 477888888875544444332 1111121223444443333321 112244
Q ss_pred ccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 203 YDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 203 fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
||+|+.+-.+.. ++.-..+...++..|..++.+.+..
T Consensus 163 ~DlilasDvvy~-~~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 163 FDLILASDVVYE-EESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred ccEEEEeeeeec-CCcchhHHHHHHHHHhcCCeEEEEE
Confidence 899886543311 1223677888888999999555433
No 445
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.68 E-value=0.36 Score=46.31 Aligned_cols=74 Identities=19% Similarity=0.147 Sum_probs=47.9
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCH-HHHHH-HHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDE-AANNV-ARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~-~~~~~-A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
.+++|+.+|+|+.|+....... ..|.+|+++|.++ +.+.. ..++ .+ ..++++.+|..+. ..+.+|+|+
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~--~~G~~V~~~d~~~~~~~~~~~~~l-~~-----~~~~~~~~~~~~~--~~~~~d~vv 73 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLK--KLGAKVILTDEKEEDQLKEALEEL-GE-----LGIELVLGEYPEE--FLEGVDLVV 73 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCchHHHHHHHHHH-Hh-----cCCEEEeCCcchh--HhhcCCEEE
Confidence 4689999999988875443322 3789999999985 32222 2222 22 2366777776642 236799999
Q ss_pred EcCcCC
Q 039591 208 LAALVG 213 (284)
Q Consensus 208 ~~~~~~ 213 (284)
.++...
T Consensus 74 ~~~g~~ 79 (450)
T PRK14106 74 VSPGVP 79 (450)
T ss_pred ECCCCC
Confidence 887653
No 446
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=94.68 E-value=0.32 Score=43.05 Aligned_cols=96 Identities=15% Similarity=0.188 Sum_probs=62.1
Q ss_pred cCCCCeEEEecC-CCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEE
Q 039591 128 VVQPKKVAFVGS-GPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCI 206 (284)
Q Consensus 128 ~~~~~~VL~iGs-Gp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V 206 (284)
..++.+|+..|+ |++|..++.+++ ..|.+|++++.++ ..+.+++. + ...-+.....+..+ ...-+.+|++
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~--~~g~~v~~~~~~~-~~~~~~~~----g-~~~~~~~~~~~~~~-~~~~~~~d~v 212 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAK--ARGARVIATASAA-NADFLRSL----G-ADEVIDYTKGDFER-AAAPGGVDAV 212 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHH--HcCCEEEEEecch-hHHHHHHc----C-CCEEEeCCCCchhh-ccCCCCceEE
Confidence 367889999996 889999988888 3678898888776 66655432 3 11111111112211 1112569999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+..... .....+.+.++++|.++..+
T Consensus 213 ~~~~~~--------~~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 213 LDTVGG--------ETLARSLALVKPGGRLVSIA 238 (309)
T ss_pred EECCch--------HHHHHHHHHHhcCcEEEEEc
Confidence 976442 25677788999999998654
No 447
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.63 E-value=0.13 Score=47.07 Aligned_cols=106 Identities=16% Similarity=0.081 Sum_probs=68.7
Q ss_pred HHHhhccCCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEE-EcchhhhhccC
Q 039591 122 ILKENGVVQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFL-TGDILQVKEKL 200 (284)
Q Consensus 122 ~l~~~~~~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~-~~D~~~~~~~l 200 (284)
.|.++...++++|-.+|.|-+|-.++.+|+ .-|.+|+++|-++..-+.|-+. +|. +.-+.+. ..|..+...
T Consensus 173 pLk~~g~~pG~~vgI~GlGGLGh~aVq~AK--AMG~rV~vis~~~~kkeea~~~---LGA-d~fv~~~~d~d~~~~~~-- 244 (360)
T KOG0023|consen 173 PLKRSGLGPGKWVGIVGLGGLGHMAVQYAK--AMGMRVTVISTSSKKKEEAIKS---LGA-DVFVDSTEDPDIMKAIM-- 244 (360)
T ss_pred hhHHcCCCCCcEEEEecCcccchHHHHHHH--HhCcEEEEEeCCchhHHHHHHh---cCc-ceeEEecCCHHHHHHHH--
Confidence 455555679999999999978888899998 3789999999998555554443 341 1223333 344433222
Q ss_pred CCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 201 GEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 201 ~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+..|.++.....- . ..-++.+.++||++|.+++.+
T Consensus 245 ~~~dg~~~~v~~~-a----~~~~~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 245 KTTDGGIDTVSNL-A----EHALEPLLGLLKVNGTLVLVG 279 (360)
T ss_pred HhhcCcceeeeec-c----ccchHHHHHHhhcCCEEEEEe
Confidence 3445444322210 0 344677889999999999887
No 448
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.61 E-value=0.64 Score=43.92 Aligned_cols=101 Identities=18% Similarity=0.284 Sum_probs=69.4
Q ss_pred CeEEEecCCCChHH-HHHHHhhcCCCcEEEEEeCCHHHHHHHHHHH------------hhccCCCCCeEEEEcchhhhhc
Q 039591 132 KKVAFVGSGPMPLT-SIVMAKNHLKATHFDNFDIDEAANNVARRIV------------ATDFEFEKRMKFLTGDILQVKE 198 (284)
Q Consensus 132 ~~VL~iGsGp~G~~-ai~la~~~~~~~~V~~vDis~~~~~~A~~~~------------~~~~~l~~~v~~~~~D~~~~~~ 198 (284)
++|-.+|+|=.|++ +.+||. -|..|+++|+|+..++.-++.. ++ +....|++| +.|..+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~---~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~-~~~~gRl~f-Ttd~~~--- 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAE---LGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKE-NLASGRLRF-TTDYEE--- 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHH---cCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHh-ccccCcEEE-EcCHHH---
Confidence 47889999988987 456776 6799999999999998866532 11 111234555 344432
Q ss_pred cCCCccEEEEcCcCCC------CHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 199 KLGEYDCIFLAALVGM------SKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 199 ~l~~fD~V~~~~~~~~------~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.....|++|++.+-.. +-..-..+.+.+.++++...++++.+
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KS 120 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKS 120 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcC
Confidence 2357899999854321 12334788899999999888888877
No 449
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.60 E-value=0.17 Score=41.76 Aligned_cols=69 Identities=9% Similarity=0.145 Sum_probs=42.6
Q ss_pred CCCCeEEEecCCCChHHHHH-HHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIV-MAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~-la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
-.+++|+.+|+|..|..-+. |.+ .|+.|+.++ |+..+..++ ++ .+++......+ .++..+|+|+
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~---~ga~V~VIs--p~~~~~l~~----l~----~i~~~~~~~~~--~dl~~a~lVi 75 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKD---TGAFVTVVS--PEICKEMKE----LP----YITWKQKTFSN--DDIKDAHLIY 75 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHh---CCCEEEEEc--CccCHHHHh----cc----CcEEEecccCh--hcCCCceEEE
Confidence 46789999999988876443 433 678888884 443322222 12 34554444332 3457899999
Q ss_pred EcCcC
Q 039591 208 LAALV 212 (284)
Q Consensus 208 ~~~~~ 212 (284)
.+...
T Consensus 76 aaT~d 80 (157)
T PRK06719 76 AATNQ 80 (157)
T ss_pred ECCCC
Confidence 87643
No 450
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=94.57 E-value=0.26 Score=44.65 Aligned_cols=98 Identities=16% Similarity=0.215 Sum_probs=64.0
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEE--eCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc---CCCc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNF--DIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK---LGEY 203 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~v--Dis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~---l~~f 203 (284)
.++.+||.-|+|.+|..++.+|+ ..|.+|+.+ +-+++..+.+++. | . +.+.....|..+.... -+.+
T Consensus 163 ~~g~~vlI~g~g~~g~~~~~la~--~~G~~v~~~~~~~~~~~~~~~~~~----g-~-~~~~~~~~~~~~~l~~~~~~~~v 234 (306)
T cd08258 163 RPGDTVVVFGPGPIGLLAAQVAK--LQGATVVVVGTEKDEVRLDVAKEL----G-A-DAVNGGEEDLAELVNEITDGDGA 234 (306)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--HcCCEEEEECCCCCHHHHHHHHHh----C-C-cccCCCcCCHHHHHHHHcCCCCC
Confidence 57789999899889999999998 356777766 4455566555553 3 1 1112223333222211 1469
Q ss_pred cEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEec
Q 039591 204 DCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSA 241 (284)
Q Consensus 204 D~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~ 241 (284)
|+++..... ...+....+.|+++|.++..+.
T Consensus 235 d~vld~~g~-------~~~~~~~~~~l~~~G~~v~~g~ 265 (306)
T cd08258 235 DVVIECSGA-------VPALEQALELLRKGGRIVQVGI 265 (306)
T ss_pred CEEEECCCC-------hHHHHHHHHHhhcCCEEEEEcc
Confidence 999987543 3567788899999999997653
No 451
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=94.57 E-value=0.24 Score=44.59 Aligned_cols=93 Identities=11% Similarity=0.090 Sum_probs=62.8
Q ss_pred CCeEEEecC-CCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcch-hhhhcc--CCCccEE
Q 039591 131 PKKVAFVGS-GPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDI-LQVKEK--LGEYDCI 206 (284)
Q Consensus 131 ~~~VL~iGs-Gp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~-~~~~~~--l~~fD~V 206 (284)
+.+|+..|+ |++|..++.+|+ ..|.+|++++.+++..+.+++. | . +.+ +...+. .+.... -+.+|+|
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~--~~g~~v~~~~~~~~~~~~~~~~----g-~-~~~-~~~~~~~~~~~~~~~~~~~d~v 217 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILA--KLGYTVVALTGKEEQADYLKSL----G-A-SEV-LDREDLLDESKKPLLKARWAGA 217 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHhc----C-C-cEE-EcchhHHHHHHHHhcCCCccEE
Confidence 468999997 889999999998 4678899999999988877643 3 1 111 111111 011111 1468999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+.... ...++...+.++++|+++..+
T Consensus 218 i~~~~--------~~~~~~~~~~l~~~g~~v~~g 243 (325)
T cd05280 218 IDTVG--------GDVLANLLKQTKYGGVVASCG 243 (325)
T ss_pred EECCc--------hHHHHHHHHhhcCCCEEEEEe
Confidence 86533 235778889999999998765
No 452
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=94.57 E-value=0.23 Score=46.89 Aligned_cols=97 Identities=10% Similarity=0.001 Sum_probs=64.6
Q ss_pred CCCCeEEEecC-CCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcc---------------
Q 039591 129 VQPKKVAFVGS-GPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGD--------------- 192 (284)
Q Consensus 129 ~~~~~VL~iGs-Gp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D--------------- 192 (284)
.++.+|+..|+ |++|..++.+|+ ..|+++++++.+++..+.+++. | ....+.....|
T Consensus 188 ~~g~~vlV~Ga~g~vG~~ai~~ak--~~G~~vi~~~~~~~~~~~~~~~----g-~~~~v~~~~~~~~~~~~~~~~~~~~~ 260 (398)
T TIGR01751 188 KPGDNVLIWGAAGGLGSYATQLAR--AGGGNPVAVVSSPEKAEYCREL----G-AEAVIDRNDFGHWGRLPDLNTQAPKE 260 (398)
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHH--HcCCeEEEEcCCHHHHHHHHHc----C-CCEEecCCCcchhhccccccccccch
Confidence 56789999997 889999999998 4678889999999888877763 2 11111110000
Q ss_pred -------hhhhhc---cCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 193 -------ILQVKE---KLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 193 -------~~~~~~---~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
..+... .-+.+|+|+.+.. ...+....+.++++|.++..+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~g~d~vld~~g--------~~~~~~~~~~l~~~G~~v~~g 310 (398)
T TIGR01751 261 WTKSFKRFGKRIRELTGGEDPDIVFEHPG--------RATFPTSVFVCRRGGMVVICG 310 (398)
T ss_pred hhhcchhHHHHHHHHcCCCCceEEEECCc--------HHHHHHHHHhhccCCEEEEEc
Confidence 000000 1146999998753 235677888999999998765
No 453
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=94.56 E-value=0.39 Score=43.38 Aligned_cols=96 Identities=8% Similarity=0.062 Sum_probs=63.0
Q ss_pred cCCCC-eEEEecC-CCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC--CCc
Q 039591 128 VVQPK-KVAFVGS-GPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL--GEY 203 (284)
Q Consensus 128 ~~~~~-~VL~iGs-Gp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l--~~f 203 (284)
..++. +|+..|+ |++|..++.+|+ ..|.++++++-+++..+.+++. | ...-+. ..+.......+ +++
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~--~~G~~vi~~~~~~~~~~~~~~~----g-~~~~~~--~~~~~~~~~~~~~~~~ 212 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILS--KLGYEVVASTGKAEEEDYLKEL----G-ASEVID--REDLSPPGKPLEKERW 212 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHH--HcCCeEEEEeCCHHHHHHHHhc----C-CcEEEc--cccHHHHHHHhcCCCc
Confidence 35677 9999997 989999999998 3578888888877776666543 3 111111 11111011111 359
Q ss_pred cEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 204 DCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 204 D~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+|+.+... ..+..+.+.++++|+++..+
T Consensus 213 d~vld~~g~--------~~~~~~~~~l~~~G~~v~~g 241 (323)
T TIGR02823 213 AGAVDTVGG--------HTLANVLAQLKYGGAVAACG 241 (323)
T ss_pred eEEEECccH--------HHHHHHHHHhCCCCEEEEEc
Confidence 998876542 24567888999999998765
No 454
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.55 E-value=0.4 Score=45.91 Aligned_cols=95 Identities=15% Similarity=0.114 Sum_probs=62.4
Q ss_pred CeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh--c--cCCCccEEE
Q 039591 132 KKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK--E--KLGEYDCIF 207 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~--~--~l~~fD~V~ 207 (284)
++|+.+|+|+.|........ ..|..|+.+|.+++.++.+++. ..+.++.+|..+.. . ..+.+|.|+
T Consensus 1 m~viIiG~G~ig~~~a~~L~--~~g~~v~vid~~~~~~~~~~~~--------~~~~~~~gd~~~~~~l~~~~~~~a~~vi 70 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLS--GENNDVTVIDTDEERLRRLQDR--------LDVRTVVGNGSSPDVLREAGAEDADLLI 70 (453)
T ss_pred CEEEEECCCHHHHHHHHHHH--hCCCcEEEEECCHHHHHHHHhh--------cCEEEEEeCCCCHHHHHHcCCCcCCEEE
Confidence 37999999988877655443 2578999999999987766542 13677788876421 1 236899988
Q ss_pred EcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+...- .+....+....+.+.|.-.++++.
T Consensus 71 ~~~~~----~~~n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 71 AVTDS----DETNMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred EecCC----hHHHHHHHHHHHHhcCCCeEEEEE
Confidence 87543 223344445556665665565553
No 455
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=94.54 E-value=0.28 Score=44.85 Aligned_cols=99 Identities=15% Similarity=0.144 Sum_probs=65.5
Q ss_pred cCCCCeEEEecCCCChHHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhh----h--hccC
Q 039591 128 VVQPKKVAFVGSGPMPLTSIVMAKNHLKAT-HFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQ----V--KEKL 200 (284)
Q Consensus 128 ~~~~~~VL~iGsGp~G~~ai~la~~~~~~~-~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~----~--~~~l 200 (284)
..++++||..|+|++|..++.+|+ . .|. .+++++.+++..+.+++. + ...-+.....+..+ . ...-
T Consensus 159 ~~~g~~VlI~g~g~vg~~~~~la~-~-~G~~~v~~~~~~~~~~~~~~~~----g-~~~~i~~~~~~~~~~~~~~~~~~~~ 231 (341)
T cd08262 159 LTPGEVALVIGCGPIGLAVIAALK-A-RGVGPIVASDFSPERRALALAM----G-ADIVVDPAADSPFAAWAAELARAGG 231 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH-H-cCCcEEEEECCCHHHHHHHHHc----C-CcEEEcCCCcCHHHHHHHHHHHhCC
Confidence 367889999999999999999998 3 455 488899999999888764 2 11111111111110 0 1111
Q ss_pred CCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 201 GEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 201 ~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+.+|+|+..... ...+..+.+.++++|+++..+
T Consensus 232 ~~~d~vid~~g~-------~~~~~~~~~~l~~~g~~v~~g 264 (341)
T cd08262 232 PKPAVIFECVGA-------PGLIQQIIEGAPPGGRIVVVG 264 (341)
T ss_pred CCCCEEEECCCC-------HHHHHHHHHHhccCCEEEEEC
Confidence 469999965432 235677788999999998765
No 456
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=94.54 E-value=0.64 Score=45.30 Aligned_cols=104 Identities=17% Similarity=0.151 Sum_probs=66.4
Q ss_pred CeEEEecCCCChHHHH-HHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhc--cCC--------CCCeEEEEcchhhhhccC
Q 039591 132 KKVAFVGSGPMPLTSI-VMAKNHLKATHFDNFDIDEAANNVARRIVATD--FEF--------EKRMKFLTGDILQVKEKL 200 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai-~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~--~~l--------~~~v~~~~~D~~~~~~~l 200 (284)
.+|..+|+|-.|+... .||. ...+.+|+++|++++.++.-++-.... .++ ..+.+| +.|..+ .+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~-~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~-t~~~~~---~i 76 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIAL-KCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF-STDVEK---HV 76 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHh-cCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE-EcCHHH---HH
Confidence 4799999998887754 4554 234688999999999998865432110 000 112333 233321 23
Q ss_pred CCccEEEEcCcCCC-----------CHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 201 GEYDCIFLAALVGM-----------SKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 201 ~~fD~V~~~~~~~~-----------~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
...|+||++-.... +...-..+.+.+.+++++|.++++++
T Consensus 77 ~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~S 127 (473)
T PLN02353 77 AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (473)
T ss_pred hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeC
Confidence 57899988743211 11245788899999999999988887
No 457
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.54 E-value=0.072 Score=52.90 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=29.6
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCC
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDID 165 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis 165 (284)
..+++|+.||+||.|+++...++ ..|.+|+.+|..
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~--~~G~~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLR--RMGHAVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--HCCCeEEEEecC
Confidence 56789999999999999988776 357889999954
No 458
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.52 E-value=0.25 Score=45.19 Aligned_cols=97 Identities=9% Similarity=0.044 Sum_probs=58.7
Q ss_pred CeEEEecCCCChHH-HHHHHhhcCCCcEEEEEeCCHHHHHHHHHH--HhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 132 KKVAFVGSGPMPLT-SIVMAKNHLKATHFDNFDIDEAANNVARRI--VATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 132 ~~VL~iGsGp~G~~-ai~la~~~~~~~~V~~vDis~~~~~~A~~~--~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.+|+.+|+|.+|.. +..|++ .|..|+.++.+++.++.-++. +.-.. -+....+. .... .....+.||+|++
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~---~G~~V~lv~r~~~~~~~i~~~~Gl~i~~-~g~~~~~~-~~~~-~~~~~~~~D~viv 76 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLAR---AGLPVRLILRDRQRLAAYQQAGGLTLVE-QGQASLYA-IPAE-TADAAEPIHRLLL 76 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHh---CCCCeEEEEechHHHHHHhhcCCeEEee-CCcceeec-cCCC-CcccccccCEEEE
Confidence 58999999988864 445555 567899999987666655432 11000 01111111 1111 0122368999998
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEE
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLV 238 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~ 238 (284)
+.=. .+-.++++.+..++.+++.++.
T Consensus 77 ~vK~----~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 77 ACKA----YDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred ECCH----HhHHHHHHHHHhhCCCCCEEEE
Confidence 8522 2336788899999999986653
No 459
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.49 E-value=0.44 Score=43.99 Aligned_cols=102 Identities=16% Similarity=0.240 Sum_probs=59.2
Q ss_pred CCeEEEecCCCChHHHHHHHhhcCCC-cEEEEEeCCHHHHHHHHHH--HhhccCCCCCeEEEE-cchhhhhccCCCccEE
Q 039591 131 PKKVAFVGSGPMPLTSIVMAKNHLKA-THFDNFDIDEAANNVARRI--VATDFEFEKRMKFLT-GDILQVKEKLGEYDCI 206 (284)
Q Consensus 131 ~~~VL~iGsGp~G~~ai~la~~~~~~-~~V~~vDis~~~~~~A~~~--~~~~~~l~~~v~~~~-~D~~~~~~~l~~fD~V 206 (284)
..+|..||+|..|.+....+. ..+ ..++-+|++++.. .++.+ ...........++.. +|.. ++...|+|
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la--~~gl~~i~LvDi~~~~~-~~~~ld~~~~~~~~~~~~~I~~~~d~~----~l~~aDiV 78 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIV--LKNLGDVVLFDIVKNIP-QGKALDISHSNVIAGSNSKVIGTNNYE----DIAGSDVV 78 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHH--hCCCCeEEEEeCCCchh-hHHHHHHHhhhhccCCCeEEEECCCHH----HhCCCCEE
Confidence 369999999988877655443 245 4799999999853 22221 111111112345543 5543 34789999
Q ss_pred EEcCcCC----C-----CH--------HHHHHHHHHHHhccccCcEEEEEe
Q 039591 207 FLAALVG----M-----SK--------EEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 207 ~~~~~~~----~-----~~--------~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+..+..+ + .. +-+.++.+.+.+.. |.|.+++.+
T Consensus 79 I~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~s 128 (321)
T PTZ00082 79 IVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVIT 128 (321)
T ss_pred EECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 9976542 2 11 12456666666555 566555543
No 460
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.48 E-value=0.3 Score=46.99 Aligned_cols=74 Identities=11% Similarity=0.131 Sum_probs=46.7
Q ss_pred eEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHH-HHHHHHhhccCCCCCeEEEEcchhhh---hccCCCccEEEE
Q 039591 133 KVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANN-VARRIVATDFEFEKRMKFLTGDILQV---KEKLGEYDCIFL 208 (284)
Q Consensus 133 ~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~-~A~~~~~~~~~l~~~v~~~~~D~~~~---~~~l~~fD~V~~ 208 (284)
+|+++|.|+.|+++..++. ..|..|++.|..+..-. .....+.. ..+++..+.-.+. ...+..+|+|+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~--~~G~~V~~~D~~~~~~~~~~~~~l~~-----~gi~~~~g~~~~~~~~~~~~~~~d~vv~ 74 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLK--AQGWEVVVSDRNDSPELLERQQELEQ-----EGITVKLGKPLELESFQPWLDQPDLVVV 74 (459)
T ss_pred eEEEEccCHHHHHHHHHHH--HCCCEEEEECCCCchhhHHHHHHHHH-----cCCEEEECCccchhhhhHHhhcCCEEEE
Confidence 6999999999999877665 47899999998765321 11122232 2356655542220 012357999998
Q ss_pred cCcCC
Q 039591 209 AALVG 213 (284)
Q Consensus 209 ~~~~~ 213 (284)
.+.+.
T Consensus 75 s~gi~ 79 (459)
T PRK02705 75 SPGIP 79 (459)
T ss_pred CCCCC
Confidence 77664
No 461
>PRK08324 short chain dehydrogenase; Validated
Probab=94.48 E-value=0.44 Score=48.50 Aligned_cols=105 Identities=19% Similarity=0.209 Sum_probs=66.5
Q ss_pred CCCeEEEecC-CCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh----------c
Q 039591 130 QPKKVAFVGS-GPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK----------E 198 (284)
Q Consensus 130 ~~~~VL~iGs-Gp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~----------~ 198 (284)
.+++||..|+ |.+|........ ..|.+|+.+|.++...+.+.+.+.. . .++.++..|+.+.. .
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~--~~Ga~Vvl~~r~~~~~~~~~~~l~~---~-~~v~~v~~Dvtd~~~v~~~~~~~~~ 494 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLA--AEGACVVLADLDEEAAEAAAAELGG---P-DRALGVACDVTDEAAVQAAFEEAAL 494 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHH--HCcCEEEEEeCCHHHHHHHHHHHhc---c-CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 5689999995 546654443322 2578999999999887666554332 1 46788888876521 1
Q ss_pred cCCCccEEEEcCcCCCC-------HHH-----------HHHHHHHHHhcccc---CcEEEEEe
Q 039591 199 KLGEYDCIFLAALVGMS-------KEE-----------KMKIIRHIRKYMKD---GGILLVRS 240 (284)
Q Consensus 199 ~l~~fD~V~~~~~~~~~-------~~~-----------k~~~l~~~~~~L~p---GG~lv~~~ 240 (284)
..+++|+||.++..... .++ ...+++.+.+.|++ ||.+++.+
T Consensus 495 ~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 495 AFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 12578999988764211 111 24556667777776 67777765
No 462
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=94.45 E-value=0.23 Score=44.74 Aligned_cols=97 Identities=12% Similarity=-0.010 Sum_probs=62.9
Q ss_pred CCCCeEEEecC-CCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc---cCCCcc
Q 039591 129 VQPKKVAFVGS-GPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE---KLGEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGs-Gp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~---~l~~fD 204 (284)
.++.+||..|+ |++|..++.+|+ ..|.+++++..+++..+.+++. | ....+.....+..+... .-..+|
T Consensus 137 ~~~~~vlI~g~~~~vg~~~~~~a~--~~g~~v~~~~~~~~~~~~~~~~----g-~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (323)
T cd05282 137 PPGDWVIQNAANSAVGRMLIQLAK--LLGFKTINVVRRDEQVEELKAL----G-ADEVIDSSPEDLAQRVKEATGGAGAR 209 (323)
T ss_pred CCCCEEEEcccccHHHHHHHHHHH--HCCCeEEEEecChHHHHHHHhc----C-CCEEecccchhHHHHHHHHhcCCCce
Confidence 67789999986 678988888998 3678999999888887777543 3 21112222222221111 114699
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+|+..... .. .....+.++++|+++..+
T Consensus 210 ~vl~~~g~-------~~-~~~~~~~l~~~g~~v~~g 237 (323)
T cd05282 210 LALDAVGG-------ES-ATRLARSLRPGGTLVNYG 237 (323)
T ss_pred EEEECCCC-------HH-HHHHHHhhCCCCEEEEEc
Confidence 99966542 12 345678999999998654
No 463
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.43 E-value=0.39 Score=41.26 Aligned_cols=101 Identities=15% Similarity=0.125 Sum_probs=60.7
Q ss_pred CCCeEEEecCCCChHHHH-HHHhhcCCCc-EEEEEeCC---HHHHH---------------HHHHHHhhccCCCCCeEEE
Q 039591 130 QPKKVAFVGSGPMPLTSI-VMAKNHLKAT-HFDNFDID---EAANN---------------VARRIVATDFEFEKRMKFL 189 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai-~la~~~~~~~-~V~~vDis---~~~~~---------------~A~~~~~~~~~l~~~v~~~ 189 (284)
...+|+.+|||-+|.... .|++ .|. +++.+|.| ++-+. .+++.++++. ...+++.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~---~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~in-p~~~i~~~ 95 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLAR---AGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEIN-PYTEIEAY 95 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHH---cCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHC-CCCEEEEe
Confidence 457999999997776544 3555 454 79999988 33222 2333334333 12344444
Q ss_pred Ecchhhhh-c-cCCCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEE
Q 039591 190 TGDILQVK-E-KLGEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILL 237 (284)
Q Consensus 190 ~~D~~~~~-~-~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv 237 (284)
..++.+.. . .++.+|+|+.+... .+.|..+++.+.+.+++.-++.
T Consensus 96 ~~~i~~~~~~~~~~~~DlVi~a~Dn---~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 96 DEKITEENIDKFFKDADIVCEAFDN---AEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred eeeCCHhHHHHHhcCCCEEEECCCC---HHHHHHHHHHHHHHcCCCcEEE
Confidence 44443211 1 23689999988432 4677888899888887644444
No 464
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=94.32 E-value=0.097 Score=50.21 Aligned_cols=77 Identities=25% Similarity=0.318 Sum_probs=49.2
Q ss_pred eEEEecCCCChHHHHH---HHhh-cCCCcEEEEEeCCHHHHHHHHHHHhhc-cCCCCCeEEE-EcchhhhhccCCCccEE
Q 039591 133 KVAFVGSGPMPLTSIV---MAKN-HLKATHFDNFDIDEAANNVARRIVATD-FEFEKRMKFL-TGDILQVKEKLGEYDCI 206 (284)
Q Consensus 133 ~VL~iGsGp~G~~ai~---la~~-~~~~~~V~~vDis~~~~~~A~~~~~~~-~~l~~~v~~~-~~D~~~~~~~l~~fD~V 206 (284)
+|..||+|..|.+... ++.. ...+.+|+.+|++++.++......... .......++. +.|..+ .+...|+|
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~e---al~~AD~V 78 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRRE---ALDGADFV 78 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHH---HhcCCCEE
Confidence 6899999966876333 3321 246679999999999988876654332 1111223333 556443 34679999
Q ss_pred EEcCcC
Q 039591 207 FLAALV 212 (284)
Q Consensus 207 ~~~~~~ 212 (284)
+.+..+
T Consensus 79 i~ai~~ 84 (423)
T cd05297 79 INTIQV 84 (423)
T ss_pred EEeeEe
Confidence 988764
No 465
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=94.30 E-value=0.32 Score=42.44 Aligned_cols=100 Identities=9% Similarity=0.016 Sum_probs=65.4
Q ss_pred cCCCCeEEEec-CCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhcc---CCCc
Q 039591 128 VVQPKKVAFVG-SGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEK---LGEY 203 (284)
Q Consensus 128 ~~~~~~VL~iG-sGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~---l~~f 203 (284)
..++++|+..| +|++|..+..+++ ..|.++++++.+++..+.+++.... ....+.....+..+.... -..+
T Consensus 106 ~~~g~~vlv~g~~g~~g~~~~~~a~--~~g~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (293)
T cd05195 106 LQKGESVLIHAAAGGVGQAAIQLAQ--HLGAEVFATVGSEEKREFLRELGGP---VDHIFSSRDLSFADGILRATGGRGV 180 (293)
T ss_pred cCCCCEEEEecCCCHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHHhCCC---cceEeecCchhHHHHHHHHhCCCCc
Confidence 36788999996 6889988888998 4678999999998888777664210 001111111122211111 1469
Q ss_pred cEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 204 DCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 204 D~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
|+++..... ..+..+.+.++++|.++..+
T Consensus 181 d~vi~~~~~--------~~~~~~~~~l~~~g~~v~~g 209 (293)
T cd05195 181 DVVLNSLSG--------ELLRASWRCLAPFGRFVEIG 209 (293)
T ss_pred eEEEeCCCc--------hHHHHHHHhcccCceEEEee
Confidence 999865442 25677888999999998655
No 466
>PRK08507 prephenate dehydrogenase; Validated
Probab=94.23 E-value=0.27 Score=44.15 Aligned_cols=86 Identities=19% Similarity=0.276 Sum_probs=54.8
Q ss_pred eEEEecCCCChHHH-HHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcCc
Q 039591 133 KVAFVGSGPMPLTS-IVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAAL 211 (284)
Q Consensus 133 ~VL~iGsGp~G~~a-i~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~~ 211 (284)
+|..||+|-+|.+- ..|.+ .....+|+++|.+++..+.+++. | ..+. ..+..+ ....|+||++..
T Consensus 2 ~I~iIG~G~mG~sla~~l~~-~g~~~~v~~~d~~~~~~~~~~~~----g-~~~~----~~~~~~----~~~aD~Vilavp 67 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKE-KGLISKVYGYDHNELHLKKALEL----G-LVDE----IVSFEE----LKKCDVIFLAIP 67 (275)
T ss_pred EEEEEccCHHHHHHHHHHHh-cCCCCEEEEEcCCHHHHHHHHHC----C-CCcc----cCCHHH----HhcCCEEEEeCc
Confidence 68999999777643 33443 11124799999999988776532 3 1111 123222 224899999976
Q ss_pred CCCCHHHHHHHHHHHHhccccCcEEE
Q 039591 212 VGMSKEEKMKIIRHIRKYMKDGGILL 237 (284)
Q Consensus 212 ~~~~~~~k~~~l~~~~~~L~pGG~lv 237 (284)
. ....++++++.. +++|.+++
T Consensus 68 ~----~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 68 V----DAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred H----HHHHHHHHHHhc-cCCCCEEE
Confidence 5 344677888888 88887665
No 467
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=94.21 E-value=0.4 Score=44.35 Aligned_cols=97 Identities=6% Similarity=0.068 Sum_probs=63.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
+...++..||||..|..-+.......+..+|..+|.+++..+.-.+.+++.+ ..+.. ..|..+.. ...|+|+.
T Consensus 126 ~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g---~~v~~-~~~~~eav---~~aDiVit 198 (325)
T TIGR02371 126 KDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYE---VPVRA-ATDPREAV---EGCDILVT 198 (325)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhC---CcEEE-eCCHHHHh---ccCCEEEE
Confidence 5678999999998887654433324566789999999999876555444432 22332 45555432 57999998
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+.... ..++. .+++|||..+...+
T Consensus 199 aT~s~------~P~~~--~~~l~~g~~v~~vG 222 (325)
T TIGR02371 199 TTPSR------KPVVK--ADWVSEGTHINAIG 222 (325)
T ss_pred ecCCC------CcEec--HHHcCCCCEEEecC
Confidence 76542 22332 35679998887655
No 468
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=94.20 E-value=0.43 Score=36.67 Aligned_cols=90 Identities=13% Similarity=0.193 Sum_probs=55.6
Q ss_pred eEEEecCCCChHHHHH-HHhhcCCCcEEE-EEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcC
Q 039591 133 KVAFVGSGPMPLTSIV-MAKNHLKATHFD-NFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAA 210 (284)
Q Consensus 133 ~VL~iGsGp~G~~ai~-la~~~~~~~~V~-~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~ 210 (284)
+|+.||+|..|..-+. +.+ ..++.+++ .+|.+++..+.+.+.. + +. ...|..++... ...|+|+++.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~-~~~~~~v~~v~d~~~~~~~~~~~~~---~-----~~-~~~~~~~ll~~-~~~D~V~I~t 70 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLR-SSPDFEVVAVCDPDPERAEAFAEKY---G-----IP-VYTDLEELLAD-EDVDAVIIAT 70 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHH-TTTTEEEEEEECSSHHHHHHHHHHT---T-----SE-EESSHHHHHHH-TTESEEEEES
T ss_pred EEEEECCcHHHHHHHHHHHh-cCCCcEEEEEEeCCHHHHHHHHHHh---c-----cc-chhHHHHHHHh-hcCCEEEEec
Confidence 7899999955554442 333 34677776 5699998877764432 2 23 55777665443 4799999988
Q ss_pred cCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 211 LVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 211 ~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
... ...+ .+.+.++.|-.+++.-
T Consensus 71 p~~----~h~~---~~~~~l~~g~~v~~EK 93 (120)
T PF01408_consen 71 PPS----SHAE---IAKKALEAGKHVLVEK 93 (120)
T ss_dssp SGG----GHHH---HHHHHHHTTSEEEEES
T ss_pred CCc----chHH---HHHHHHHcCCEEEEEc
Confidence 762 2233 3444555566666643
No 469
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.19 E-value=0.41 Score=37.34 Aligned_cols=89 Identities=20% Similarity=0.198 Sum_probs=60.8
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccC-CCccEEEE
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKL-GEYDCIFL 208 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l-~~fD~V~~ 208 (284)
...+|+++|-|-...-+-.|++ .|..|+++|+++. . + ...++|+..|+++-...+ +..|+|++
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e---~g~dv~atDI~~~-------~----a--~~g~~~v~DDitnP~~~iY~~A~lIYS 76 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAE---RGFDVLATDINEK-------T----A--PEGLRFVVDDITNPNISIYEGADLIYS 76 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHH---cCCcEEEEecccc-------c----C--cccceEEEccCCCccHHHhhCccceee
Confidence 4459999999966666777777 6799999999887 1 1 145889999998643333 78899997
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
--+- ++.+..+-.+++.++ .-+++.-
T Consensus 77 iRpp----pEl~~~ildva~aVg--a~l~I~p 102 (129)
T COG1255 77 IRPP----PELQSAILDVAKAVG--APLYIKP 102 (129)
T ss_pred cCCC----HHHHHHHHHHHHhhC--CCEEEEe
Confidence 6543 444555555665554 4444444
No 470
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=94.19 E-value=0.61 Score=41.64 Aligned_cols=91 Identities=13% Similarity=0.141 Sum_probs=64.0
Q ss_pred CCCCeEEEecC-CCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 129 VQPKKVAFVGS-GPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~iGs-Gp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
.++.+|+..|+ |+.|..++.+|+ ..|.+|++++.+++..+.+++. | . .. .+...+ +.. . +.+|+++
T Consensus 131 ~~~~~vli~g~~~~~g~~~~~~a~--~~g~~v~~~~~~~~~~~~~~~~----g-~-~~-~~~~~~--~~~-~-~~~d~vl 197 (305)
T cd08270 131 LLGRRVLVTGASGGVGRFAVQLAA--LAGAHVVAVVGSPARAEGLREL----G-A-AE-VVVGGS--ELS-G-APVDLVV 197 (305)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHHc----C-C-cE-EEeccc--ccc-C-CCceEEE
Confidence 45889999998 778988888988 3678999999999888887663 3 1 11 111111 111 1 4699999
Q ss_pred EcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
..... ..+....+.|+++|+++..+
T Consensus 198 ~~~g~--------~~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 198 DSVGG--------PQLARALELLAPGGTVVSVG 222 (305)
T ss_pred ECCCc--------HHHHHHHHHhcCCCEEEEEe
Confidence 76432 24677889999999998765
No 471
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=94.18 E-value=0.33 Score=46.57 Aligned_cols=97 Identities=16% Similarity=0.109 Sum_probs=56.2
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCC-cEEEEEeCCHHHHH-HHHHHHhhccCCCCCeEEEE-cchhhhhccCCCccE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKA-THFDNFDIDEAANN-VARRIVATDFEFEKRMKFLT-GDILQVKEKLGEYDC 205 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~-~~V~~vDis~~~~~-~A~~~~~~~~~l~~~v~~~~-~D~~~~~~~l~~fD~ 205 (284)
.++++|+.+|+|++|......+. . .| .+|+.++.+++... .+++ ++ .. ++. .|.. ..+..+|+
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~-~-~G~~~V~v~~r~~~ra~~la~~----~g---~~--~~~~~~~~---~~l~~aDv 245 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLA-E-KGVRKITVANRTLERAEELAEE----FG---GE--AIPLDELP---EALAEADI 245 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHH-H-CCCCeEEEEeCCHHHHHHHHHH----cC---Cc--EeeHHHHH---HHhccCCE
Confidence 56789999999999988776655 2 35 48999999987654 3333 23 11 211 2322 22367999
Q ss_pred EEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 206 IFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 206 V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
||.+.....+.- ..+.++...+.=+.++.+++.-
T Consensus 246 VI~aT~s~~~~i-~~~~l~~~~~~~~~~~~vviDl 279 (423)
T PRK00045 246 VISSTGAPHPII-GKGMVERALKARRHRPLLLVDL 279 (423)
T ss_pred EEECCCCCCcEE-cHHHHHHHHhhccCCCeEEEEe
Confidence 999875532211 1333333321111345666655
No 472
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.17 E-value=0.55 Score=42.78 Aligned_cols=96 Identities=14% Similarity=0.213 Sum_probs=60.8
Q ss_pred eEEEecCCCChHHHH-HHHhhcCCCcEEEEEeCCHHHHHHHHHHHhh---ccC--CCCCeEEEEcchhhhhccCCCccEE
Q 039591 133 KVAFVGSGPMPLTSI-VMAKNHLKATHFDNFDIDEAANNVARRIVAT---DFE--FEKRMKFLTGDILQVKEKLGEYDCI 206 (284)
Q Consensus 133 ~VL~iGsGp~G~~ai-~la~~~~~~~~V~~vDis~~~~~~A~~~~~~---~~~--l~~~v~~~~~D~~~~~~~l~~fD~V 206 (284)
+|.+||+|.+|..-. .|++ .|..|+.+|.+++.++..++.... .++ +..++.+ ..|..+ ..+..|+|
T Consensus 3 kI~iiG~G~mG~~~a~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~D~v 75 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLAR---NGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAE---ALADADLI 75 (325)
T ss_pred EEEEECCCHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHH---HHhCCCEE
Confidence 799999998886533 3444 577899999999887766553111 000 0012222 233322 12578999
Q ss_pred EEcCcCCCCHHHHHHHHHHHHhccccCcEEEEE
Q 039591 207 FLAALVGMSKEEKMKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 207 ~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~ 239 (284)
+++... .....+++.+.+.++++.+++..
T Consensus 76 i~~v~~----~~~~~v~~~l~~~~~~~~~vi~~ 104 (325)
T PRK00094 76 LVAVPS----QALREVLKQLKPLLPPDAPIVWA 104 (325)
T ss_pred EEeCCH----HHHHHHHHHHHhhcCCCCEEEEE
Confidence 988654 35578888888888888776644
No 473
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=94.17 E-value=0.18 Score=46.11 Aligned_cols=97 Identities=11% Similarity=-0.003 Sum_probs=58.8
Q ss_pred CCCCeEEEecC-CCChHHHHHHHhhcCCCcEEEEEeCCH----HHHHHHHHHHhhccCCCCCeEEEEc---chhhhhccC
Q 039591 129 VQPKKVAFVGS-GPMPLTSIVMAKNHLKATHFDNFDIDE----AANNVARRIVATDFEFEKRMKFLTG---DILQVKEKL 200 (284)
Q Consensus 129 ~~~~~VL~iGs-Gp~G~~ai~la~~~~~~~~V~~vDis~----~~~~~A~~~~~~~~~l~~~v~~~~~---D~~~~~~~l 200 (284)
.++++||..|+ |++|..++.+|+ ..|.+++++.-++ +..+.+++ +| ....+..... +..+....+
T Consensus 145 ~~g~~vlI~g~~g~vg~~~~~~a~--~~g~~v~~~~~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~i~~~ 217 (341)
T cd08290 145 QPGDWVIQNGANSAVGQAVIQLAK--LLGIKTINVVRDRPDLEELKERLKA----LG-ADHVLTEEELRSLLATELLKSA 217 (341)
T ss_pred CCCCEEEEccchhHHHHHHHHHHH--HcCCeEEEEEcCCCcchhHHHHHHh----cC-CCEEEeCcccccccHHHHHHHH
Confidence 67889999985 889999999998 3467776665554 44555543 23 1111221111 222211112
Q ss_pred --CCccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 201 --GEYDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 201 --~~fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+.+|+|+.+... . .+..+.+.++++|.++..+
T Consensus 218 ~~~~~d~vld~~g~-------~-~~~~~~~~l~~~G~~v~~g 251 (341)
T cd08290 218 PGGRPKLALNCVGG-------K-SATELARLLSPGGTMVTYG 251 (341)
T ss_pred cCCCceEEEECcCc-------H-hHHHHHHHhCCCCEEEEEe
Confidence 269999976542 1 2345678899999998765
No 474
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.14 E-value=0.35 Score=44.06 Aligned_cols=91 Identities=14% Similarity=0.176 Sum_probs=57.5
Q ss_pred eEEEecCCCChHH-HHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcCc
Q 039591 133 KVAFVGSGPMPLT-SIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAAL 211 (284)
Q Consensus 133 ~VL~iGsGp~G~~-ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~~ 211 (284)
+|.+||+|.+|.. +..|++ .|.+|+.+|.+++..+.+.+. | +. ...+..+........|+|++...
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~---~g~~v~v~dr~~~~~~~~~~~----g-----~~-~~~~~~e~~~~~~~~dvvi~~v~ 68 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLR---GGHEVVGYDRNPEAVEALAEE----G-----AT-GADSLEELVAKLPAPRVVWLMVP 68 (301)
T ss_pred EEEEEcccHHHHHHHHHHHH---CCCeEEEEECCHHHHHHHHHC----C-----Ce-ecCCHHHHHhhcCCCCEEEEEec
Confidence 6899999987764 333444 678999999999887765331 2 22 12344433322234688888765
Q ss_pred CCCCHHHHHHHHHHHHhccccCcEEEEE
Q 039591 212 VGMSKEEKMKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 212 ~~~~~~~k~~~l~~~~~~L~pGG~lv~~ 239 (284)
.. +.-..+++.+...+++|.+++-.
T Consensus 69 ~~---~~~~~v~~~l~~~l~~g~ivid~ 93 (301)
T PRK09599 69 AG---EITDATIDELAPLLSPGDIVIDG 93 (301)
T ss_pred CC---cHHHHHHHHHHhhCCCCCEEEeC
Confidence 42 23356667788888888766543
No 475
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.09 E-value=1.6 Score=35.20 Aligned_cols=104 Identities=25% Similarity=0.337 Sum_probs=60.0
Q ss_pred CeEEEecC-CCChHHHHHHHhhcCCCcEEEEEeCCHHH-HHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEc
Q 039591 132 KKVAFVGS-GPMPLTSIVMAKNHLKATHFDNFDIDEAA-NNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLA 209 (284)
Q Consensus 132 ~~VL~iGs-Gp~G~~ai~la~~~~~~~~V~~vDis~~~-~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~ 209 (284)
.+|..||+ |..|.+...+.....-..++.-+|+++.. -..+..+-.........+.+..++. .++...|+|++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~----~~~~~aDivvit 76 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDY----EALKDADIVVIT 76 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSG----GGGTTESEEEET
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccc----cccccccEEEEe
Confidence 37999999 99998876655423445679999999753 3334343322121223344444333 344789999998
Q ss_pred CcCC----CCHH----HH----HHHHHHHHhccccCcEEEEEe
Q 039591 210 ALVG----MSKE----EK----MKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 210 ~~~~----~~~~----~k----~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+... +... .- .++.+.+.+. .|.|++++.+
T Consensus 77 ag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~-~p~~~vivvt 118 (141)
T PF00056_consen 77 AGVPRKPGMSRLDLLEANAKIVKEIAKKIAKY-APDAIVIVVT 118 (141)
T ss_dssp TSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHH-STTSEEEE-S
T ss_pred ccccccccccHHHHHHHhHhHHHHHHHHHHHh-CCccEEEEeC
Confidence 7652 2221 12 3344444444 3778877765
No 476
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.03 E-value=0.37 Score=43.85 Aligned_cols=91 Identities=18% Similarity=0.275 Sum_probs=57.9
Q ss_pred eEEEecCCCChHHH-HHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcCc
Q 039591 133 KVAFVGSGPMPLTS-IVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAAL 211 (284)
Q Consensus 133 ~VL~iGsGp~G~~a-i~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~~ 211 (284)
+|.+||.|-+|..- ..+++ .+.+|+.+|.+++..+.+++ .| +. ...+..+........|+|+++..
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~---~g~~v~v~dr~~~~~~~~~~----~g-----~~-~~~s~~~~~~~~~~advVi~~vp 68 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRE---DGHEVVGYDVNQEAVDVAGK----LG-----IT-ARHSLEELVSKLEAPRTIWVMVP 68 (299)
T ss_pred EEEEEcccHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHH----CC-----Ce-ecCCHHHHHHhCCCCCEEEEEec
Confidence 68999999877632 33443 57889999999987766532 12 12 22344433322234689988765
Q ss_pred CCCCHHHHHHHHHHHHhccccCcEEEEE
Q 039591 212 VGMSKEEKMKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 212 ~~~~~~~k~~~l~~~~~~L~pGG~lv~~ 239 (284)
.. +.-..+++.+...+++|.+++-.
T Consensus 69 ~~---~~~~~v~~~i~~~l~~g~ivid~ 93 (299)
T PRK12490 69 AG---EVTESVIKDLYPLLSPGDIVVDG 93 (299)
T ss_pred Cc---hHHHHHHHHHhccCCCCCEEEEC
Confidence 42 34466777888888888776654
No 477
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=94.01 E-value=0.8 Score=40.98 Aligned_cols=108 Identities=15% Similarity=0.137 Sum_probs=69.5
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccC-CCCCeEEEEcchhhh-hccC--CCcc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFE-FEKRMKFLTGDILQV-KEKL--GEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~-l~~~v~~~~~D~~~~-~~~l--~~fD 204 (284)
.....|+.+||| +-.-+..+.. .++.++.-+|. |+.++.-++.+...+. ...+.+++..|+.+. ...+ .+||
T Consensus 80 ~g~~qvV~LGaG-lDTr~~Rl~~--~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd 155 (260)
T TIGR00027 80 AGIRQVVILGAG-LDTRAYRLPW--PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFD 155 (260)
T ss_pred cCCcEEEEeCCc-cccHHHhcCC--CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCC
Confidence 445689999999 7665655542 23566777776 5566665666654321 246789999998621 1122 2343
Q ss_pred ----EEEEcCcC--CCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 205 ----CIFLAALV--GMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 205 ----~V~~~~~~--~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.+|+.-.+ ....++-..+++.+.+...||+.+++..
T Consensus 156 ~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~ 197 (260)
T TIGR00027 156 PTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDY 197 (260)
T ss_pred CCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 34444333 4456677889999999988999999875
No 478
>PTZ00117 malate dehydrogenase; Provisional
Probab=94.00 E-value=0.45 Score=43.86 Aligned_cols=102 Identities=13% Similarity=0.247 Sum_probs=60.1
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCC-cEEEEEeCCHHHHHHHHHH-Hhh-ccCCCCCeEEEE-cchhhhhccCCCccE
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKA-THFDNFDIDEAANNVARRI-VAT-DFEFEKRMKFLT-GDILQVKEKLGEYDC 205 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~-~~V~~vDis~~~~~~A~~~-~~~-~~~l~~~v~~~~-~D~~~~~~~l~~fD~ 205 (284)
...+|..||+|..|.+...++. ..+ ..+.-+|++++..+ +..+ ... ........++.. +|.. ++...|+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~--~~~~~~l~L~Di~~~~~~-g~~lDl~~~~~~~~~~~~i~~~~d~~----~l~~ADi 76 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLIL--QKNLGDVVLYDVIKGVPQ-GKALDLKHFSTLVGSNINILGTNNYE----DIKDSDV 76 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHH--HCCCCeEEEEECCCccch-hHHHHHhhhccccCCCeEEEeCCCHH----HhCCCCE
Confidence 3469999999977988666544 234 67999999987644 3322 111 010112334432 3432 3468999
Q ss_pred EEEcCcCCCCH------------HHHHHHHHHHHhccccCcEEEEE
Q 039591 206 IFLAALVGMSK------------EEKMKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 206 V~~~~~~~~~~------------~~k~~~l~~~~~~L~pGG~lv~~ 239 (284)
|+..+..+..+ +-..++.+.+.++ .|.+.+++.
T Consensus 77 VVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivv 121 (319)
T PTZ00117 77 VVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICV 121 (319)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEe
Confidence 99987553221 2245667777665 577755543
No 479
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.98 E-value=1.5 Score=40.40 Aligned_cols=105 Identities=23% Similarity=0.194 Sum_probs=62.3
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHH-HHHHHHHhhccCCCCCeEEEE-cchhhhhccCCCccEEE
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAAN-NVARRIVATDFEFEKRMKFLT-GDILQVKEKLGEYDCIF 207 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~-~~A~~~~~~~~~l~~~v~~~~-~D~~~~~~~l~~fD~V~ 207 (284)
+..+|..||+|-.|.+............++.-+|++++.+ ..+..+....... ....+.. +|.. ++...|+|+
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~-~~~~v~~~~dy~----~~~~adivv 76 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFL-KNPKIEADKDYS----VTANSKVVI 76 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccC-CCCEEEECCCHH----HhCCCCEEE
Confidence 4469999999999988666444123345799999987633 4444443332111 1124443 5543 347899999
Q ss_pred EcCcC----CCCHHH--------HHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALV----GMSKEE--------KMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~----~~~~~~--------k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+.+.. +++..+ -.++.+.+.++ .|.|++++.+
T Consensus 77 itaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvs 120 (312)
T cd05293 77 VTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVS 120 (312)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEcc
Confidence 87654 333322 13445555555 6788877755
No 480
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.98 E-value=0.24 Score=45.70 Aligned_cols=95 Identities=9% Similarity=0.157 Sum_probs=54.6
Q ss_pred CeEEEecCCCChHHH-HHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCC-CCCeE-----E-EEcchhhhhccCCCc
Q 039591 132 KKVAFVGSGPMPLTS-IVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEF-EKRMK-----F-LTGDILQVKEKLGEY 203 (284)
Q Consensus 132 ~~VL~iGsGp~G~~a-i~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l-~~~v~-----~-~~~D~~~~~~~l~~f 203 (284)
.+|.+||+|.+|..- ..|++ .|.+|+.+|.++.. +..++.-...... ..... + ...|. .....+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~---~G~~V~~~~r~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 74 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAA---AGADVTLIGRARIG-DELRAHGLTLTDYRGRDVRVPPSAIAFSTDP----AALATA 74 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHh---cCCcEEEEecHHHH-HHHHhcCceeecCCCcceecccceeEeccCh----hhccCC
Confidence 479999999888553 33444 57889999987642 3322210000000 00111 0 11121 223679
Q ss_pred cEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEE
Q 039591 204 DCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLV 238 (284)
Q Consensus 204 D~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~ 238 (284)
|+|+++... .+..++++.+.+.++++.+++.
T Consensus 75 D~vil~vk~----~~~~~~~~~l~~~~~~~~iii~ 105 (341)
T PRK08229 75 DLVLVTVKS----AATADAAAALAGHARPGAVVVS 105 (341)
T ss_pred CEEEEEecC----cchHHHHHHHHhhCCCCCEEEE
Confidence 999988643 2346788888888888876553
No 481
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.92 E-value=0.7 Score=44.25 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=62.7
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh----ccCCCcc
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK----EKLGEYD 204 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~----~~l~~fD 204 (284)
...++|+.+|+|..|........ ..+..|+.+|.|++.++..++.. ..+.++.||..+.. .....+|
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~--~~~~~v~vid~~~~~~~~~~~~~-------~~~~~i~gd~~~~~~L~~~~~~~a~ 299 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLE--KEGYSVKLIERDPERAEELAEEL-------PNTLVLHGDGTDQELLEEEGIDEAD 299 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--hCCCeEEEEECCHHHHHHHHHHC-------CCCeEEECCCCCHHHHHhcCCccCC
Confidence 34678999999988877554333 25789999999999988766542 24677889986531 1236899
Q ss_pred EEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEE
Q 039591 205 CIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 205 ~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~ 239 (284)
.|+..... ....-....+.+.+.+. .++.+
T Consensus 300 ~vi~~~~~----~~~n~~~~~~~~~~~~~-~ii~~ 329 (453)
T PRK09496 300 AFIALTND----DEANILSSLLAKRLGAK-KVIAL 329 (453)
T ss_pred EEEECCCC----cHHHHHHHHHHHHhCCC-eEEEE
Confidence 98876543 12223333444556554 44443
No 482
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=93.92 E-value=0.45 Score=44.10 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=59.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
-.+++|..||+|-+|......++ ..|.+|+++|.++.... + .+.+ ..+..+. +...|+|++
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~--~~G~~V~~~d~~~~~~~---------~----~~~~-~~~l~el---l~~aDiVil 204 (330)
T PRK12480 144 VKNMTVAIIGTGRIGAATAKIYA--GFGATITAYDAYPNKDL---------D----FLTY-KDSVKEA---IKDADIISL 204 (330)
T ss_pred cCCCEEEEECCCHHHHHHHHHHH--hCCCEEEEEeCChhHhh---------h----hhhc-cCCHHHH---HhcCCEEEE
Confidence 35679999999988876544444 36789999999875321 0 0111 2233322 367899998
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEE
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVR 239 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~ 239 (284)
+.+.. ++-+..+-+.....|++|.+|+-.
T Consensus 205 ~lP~t--~~t~~li~~~~l~~mk~gavlIN~ 233 (330)
T PRK12480 205 HVPAN--KESYHLFDKAMFDHVKKGAILVNA 233 (330)
T ss_pred eCCCc--HHHHHHHhHHHHhcCCCCcEEEEc
Confidence 87652 233455667888999999877653
No 483
>PRK06141 ornithine cyclodeaminase; Validated
Probab=93.91 E-value=0.5 Score=43.44 Aligned_cols=97 Identities=14% Similarity=0.144 Sum_probs=59.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
..+++|+.||+|..|...........+..+|+.++.+++..+.-.+.+++.+ ..+.. ..+..+. ....|+|+.
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g---~~~~~-~~~~~~a---v~~aDIVi~ 195 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQG---FDAEV-VTDLEAA---VRQADIISC 195 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcC---CceEE-eCCHHHH---HhcCCEEEE
Confidence 5678999999998887765422213466789999999887665444443322 12332 3444332 367999987
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+.... ..++.. +.++||..+...+
T Consensus 196 aT~s~------~pvl~~--~~l~~g~~i~~ig 219 (314)
T PRK06141 196 ATLST------EPLVRG--EWLKPGTHLDLVG 219 (314)
T ss_pred eeCCC------CCEecH--HHcCCCCEEEeeC
Confidence 66542 122322 5789998666544
No 484
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.91 E-value=0.95 Score=41.22 Aligned_cols=102 Identities=22% Similarity=0.224 Sum_probs=57.9
Q ss_pred CeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH--HHhhccCCCCCeEEE-EcchhhhhccCCCccEEEE
Q 039591 132 KKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARR--IVATDFEFEKRMKFL-TGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~--~~~~~~~l~~~v~~~-~~D~~~~~~~l~~fD~V~~ 208 (284)
.+|..||+|..|.+..........+ +|+.+|++++.++ ++. +...........++. .+|.. ++...|+|++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~-~~~~dl~~~~~~~~~~~~i~~~~d~~----~~~~aDiVii 76 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQ-GKALDIAEAAPVEGFDTKITGTNDYE----DIAGSDVVVI 76 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhH-HHHHHHHhhhhhcCCCcEEEeCCCHH----HHCCCCEEEE
Confidence 5899999998788766544311113 9999999998753 322 211111011123333 24432 3467999998
Q ss_pred cCcCCC----C--------HHHHHHHHHHHHhccccCcEEEEEe
Q 039591 209 AALVGM----S--------KEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 209 ~~~~~~----~--------~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+..... . .+-+.++++.+.+.. |.+.+++.+
T Consensus 77 ~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~t 119 (307)
T PRK06223 77 TAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVT 119 (307)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 865421 1 123566777777665 566555443
No 485
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.89 E-value=0.68 Score=40.48 Aligned_cols=72 Identities=15% Similarity=0.111 Sum_probs=51.4
Q ss_pred CeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhh--hcc--CCCccEEE
Q 039591 132 KKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQV--KEK--LGEYDCIF 207 (284)
Q Consensus 132 ~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~--~~~--l~~fD~V~ 207 (284)
++++.+|+|..|.+...... ..|..|+.+|.|++.++..... . .....+++|..+. +.+ ...+|+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~--~~g~~Vv~Id~d~~~~~~~~~~--~-----~~~~~v~gd~t~~~~L~~agi~~aD~vv 71 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELS--EEGHNVVLIDRDEERVEEFLAD--E-----LDTHVVIGDATDEDVLEEAGIDDADAVV 71 (225)
T ss_pred CEEEEECCcHHHHHHHHHHH--hCCCceEEEEcCHHHHHHHhhh--h-----cceEEEEecCCCHHHHHhcCCCcCCEEE
Confidence 47899999999988655333 2678999999999998874331 1 2356778887763 222 37899999
Q ss_pred EcCcC
Q 039591 208 LAALV 212 (284)
Q Consensus 208 ~~~~~ 212 (284)
.+...
T Consensus 72 a~t~~ 76 (225)
T COG0569 72 AATGN 76 (225)
T ss_pred EeeCC
Confidence 87654
No 486
>PTZ00357 methyltransferase; Provisional
Probab=93.89 E-value=0.24 Score=49.76 Aligned_cols=102 Identities=18% Similarity=0.202 Sum_probs=65.9
Q ss_pred eEEEecCCCChHHHHHHHhh--cCCCcEEEEEeCCHHHHHHHHHHHh---hccC----CCCCeEEEEcchhhhhcc----
Q 039591 133 KVAFVGSGPMPLTSIVMAKN--HLKATHFDNFDIDEAANNVARRIVA---TDFE----FEKRMKFLTGDILQVKEK---- 199 (284)
Q Consensus 133 ~VL~iGsGp~G~~ai~la~~--~~~~~~V~~vDis~~~~~~A~~~~~---~~~~----l~~~v~~~~~D~~~~~~~---- 199 (284)
.|+.+|+|-.|+-...|... ..-..+|++||.++.++...+.... .+.. .+++|+++..|..++..+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 58999999777776655431 2234689999999776555544422 2211 135799999999886321
Q ss_pred -------CCCccEEEEcCc--CCCCHHHHHHHHHHHHhcccc----CcE
Q 039591 200 -------LGEYDCIFLAAL--VGMSKEEKMKIIRHIRKYMKD----GGI 235 (284)
Q Consensus 200 -------l~~fD~V~~~~~--~~~~~~~k~~~l~~~~~~L~p----GG~ 235 (284)
.+++|+|++--+ .|.. |--++.++-+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDN-ELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDN-ELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccc-cCCHHHHHHHHHhhhhhcccccc
Confidence 147999997532 2322 3336778888888876 675
No 487
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=93.89 E-value=0.18 Score=43.81 Aligned_cols=88 Identities=15% Similarity=0.224 Sum_probs=60.9
Q ss_pred CCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhc---cCCCccEEE
Q 039591 131 PKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKE---KLGEYDCIF 207 (284)
Q Consensus 131 ~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~---~l~~fD~V~ 207 (284)
.-++|||||= .....+.-. +-..|+.||+++. . -.+.+.|.++.+. +-+.||+|.
T Consensus 52 ~lrlLEVGal-s~~N~~s~~----~~fdvt~IDLns~----------~-------~~I~qqDFm~rplp~~~~e~FdvIs 109 (219)
T PF11968_consen 52 KLRLLEVGAL-STDNACSTS----GWFDVTRIDLNSQ----------H-------PGILQQDFMERPLPKNESEKFDVIS 109 (219)
T ss_pred cceEEeeccc-CCCCccccc----CceeeEEeecCCC----------C-------CCceeeccccCCCCCCcccceeEEE
Confidence 3699999998 555554433 3346999999651 1 1345677776532 237899998
Q ss_pred EcCcC--CCCHHHHHHHHHHHHhccccCcE-----EEEEe
Q 039591 208 LAALV--GMSKEEKMKIIRHIRKYMKDGGI-----LLVRS 240 (284)
Q Consensus 208 ~~~~~--~~~~~~k~~~l~~~~~~L~pGG~-----lv~~~ 240 (284)
++-.. -..+.++-+.++.+.+.|+|+|. |.+..
T Consensus 110 ~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 110 LSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEe
Confidence 76432 12357889999999999999999 76654
No 488
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=93.88 E-value=0.97 Score=40.72 Aligned_cols=95 Identities=15% Similarity=0.143 Sum_probs=62.9
Q ss_pred CCCCeEEEecC-CCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 129 VQPKKVAFVGS-GPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~iGs-Gp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
.++.+||..|+ |++|..++.+++ ..|.+|+++..+++..+.+++. + . .. .+...+..+.......+|+|+
T Consensus 161 ~~~~~vlI~ga~g~vG~~~~~~a~--~~g~~v~~~~~~~~~~~~~~~~----~-~-~~-~~~~~~~~~~~~~~~~~d~v~ 231 (332)
T cd08259 161 KKGDTVLVTGAGGGVGIHAIQLAK--ALGARVIAVTRSPEKLKILKEL----G-A-DY-VIDGSKFSEDVKKLGGADVVI 231 (332)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHH--HcCCeEEEEeCCHHHHHHHHHc----C-C-cE-EEecHHHHHHHHhccCCCEEE
Confidence 66789999985 789998888887 3678999999888877665432 2 1 11 111111222122234799999
Q ss_pred EcCcCCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 208 LAALVGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
.+... .....+.+.++++|.++..+
T Consensus 232 ~~~g~--------~~~~~~~~~~~~~g~~v~~g 256 (332)
T cd08259 232 ELVGS--------PTIEESLRSLNKGGRLVLIG 256 (332)
T ss_pred ECCCh--------HHHHHHHHHhhcCCEEEEEc
Confidence 76543 22667788999999998764
No 489
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=93.87 E-value=0.4 Score=42.75 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=50.3
Q ss_pred HHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcCcCCCCHHHHHHHHHHH
Q 039591 147 IVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAALVGMSKEEKMKIIRHI 226 (284)
Q Consensus 147 i~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~~~~~~~~~k~~~l~~~ 226 (284)
..|.+ ..+..+|+++|.+++.++.|++. | ..+. ...+ .+ ....+|+|+++.++ ..-.++++++
T Consensus 3 ~aL~~-~g~~~~v~g~d~~~~~~~~a~~~----g-~~~~---~~~~-~~---~~~~~DlvvlavP~----~~~~~~l~~~ 65 (258)
T PF02153_consen 3 LALRK-AGPDVEVYGYDRDPETLEAALEL----G-IIDE---ASTD-IE---AVEDADLVVLAVPV----SAIEDVLEEI 65 (258)
T ss_dssp HHHHH-TTTTSEEEEE-SSHHHHHHHHHT----T-SSSE---EESH-HH---HGGCCSEEEE-S-H----HHHHHHHHHH
T ss_pred HHHHh-CCCCeEEEEEeCCHHHHHHHHHC----C-Ceee---ccCC-Hh---HhcCCCEEEEcCCH----HHHHHHHHHh
Confidence 44555 34568999999999999988765 3 1121 2222 22 23578999999876 4558999999
Q ss_pred HhccccCcEEEEEe
Q 039591 227 RKYMKDGGILLVRS 240 (284)
Q Consensus 227 ~~~L~pGG~lv~~~ 240 (284)
.+.+++|++++=.+
T Consensus 66 ~~~~~~~~iv~Dv~ 79 (258)
T PF02153_consen 66 APYLKPGAIVTDVG 79 (258)
T ss_dssp HCGS-TTSEEEE--
T ss_pred hhhcCCCcEEEEeC
Confidence 99999998887544
No 490
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=93.86 E-value=0.18 Score=48.55 Aligned_cols=96 Identities=18% Similarity=0.208 Sum_probs=63.3
Q ss_pred CCCCeEEEecCCCChHHHHHHHhhcCCCcEEE------EEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCC
Q 039591 129 VQPKKVAFVGSGPMPLTSIVMAKNHLKATHFD------NFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGE 202 (284)
Q Consensus 129 ~~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~------~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~ 202 (284)
..+++|+.||+|..|- +..+.. .-.|..|+ ++|.+...-+.|.+. | + . .++..+. +..
T Consensus 34 LkgKtIaIIGyGSqG~-AqAlNL-rdSGvnVvvglr~~~id~~~~s~~kA~~d----G-F----~--v~~~~Ea---~~~ 97 (487)
T PRK05225 34 LKGKKIVIVGCGAQGL-NQGLNM-RDSGLDISYALRKEAIAEKRASWRKATEN----G-F----K--VGTYEEL---IPQ 97 (487)
T ss_pred hCCCEEEEEccCHHHH-HHhCCC-ccccceeEEeccccccccccchHHHHHhc----C-C----c--cCCHHHH---HHh
Confidence 4679999999998776 222221 12466666 666666666655442 3 2 1 2344433 367
Q ss_pred ccEEEEcCcCCCCHHHHHHHHHHHHhccccCcEEEEEeccch
Q 039591 203 YDCIFLAALVGMSKEEKMKIIRHIRKYMKDGGILLVRSAKGA 244 (284)
Q Consensus 203 fD~V~~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~~g~ 244 (284)
.|+|++..+- .....+.+++...||||..|.+..+..+
T Consensus 98 ADvVviLlPD----t~q~~v~~~i~p~LK~Ga~L~fsHGFni 135 (487)
T PRK05225 98 ADLVINLTPD----KQHSDVVRAVQPLMKQGAALGYSHGFNI 135 (487)
T ss_pred CCEEEEcCCh----HHHHHHHHHHHhhCCCCCEEEecCCcee
Confidence 9999987654 3467788999999999999998764443
No 491
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.83 E-value=0.86 Score=41.75 Aligned_cols=100 Identities=26% Similarity=0.312 Sum_probs=60.4
Q ss_pred eEEEecCCCChHHHHHHHhhcCCC--cEEEEEeCCHHHHH-HHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEc
Q 039591 133 KVAFVGSGPMPLTSIVMAKNHLKA--THFDNFDIDEAANN-VARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLA 209 (284)
Q Consensus 133 ~VL~iGsGp~G~~ai~la~~~~~~--~~V~~vDis~~~~~-~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~ 209 (284)
+|..||+|-.|.+...... ..+ .++..+|++++..+ .|..+..... ......+..+|.. ++...|+|+++
T Consensus 2 kI~IIGaG~VG~~~a~~l~--~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~-~~~~~~i~~~d~~----~l~~aDiViit 74 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALL--LRGLASEIVLVDINKAKAEGEAMDLAHGTP-FVKPVRIYAGDYA----DCKGADVVVIT 74 (308)
T ss_pred EEEEECCCHHHHHHHHHHH--HcCCCCEEEEEECCchhhhhHHHHHHcccc-ccCCeEEeeCCHH----HhCCCCEEEEc
Confidence 6899999988887665443 234 58999999988765 4554433211 1123344455543 35789999998
Q ss_pred CcCCC----CHHH----H----HHHHHHHHhccccCcEEEEEe
Q 039591 210 ALVGM----SKEE----K----MKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 210 ~~~~~----~~~~----k----~~~l~~~~~~L~pGG~lv~~~ 240 (284)
+.... ...+ - .++.+.+.+ ..|.|++++.+
T Consensus 75 a~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~-~~~~giiiv~t 116 (308)
T cd05292 75 AGANQKPGETRLDLLKRNVAIFKEIIPQILK-YAPDAILLVVT 116 (308)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEec
Confidence 76532 2111 1 344444444 44778877764
No 492
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=93.81 E-value=1 Score=38.93 Aligned_cols=101 Identities=17% Similarity=0.111 Sum_probs=57.9
Q ss_pred CeEEEec-CCCChHHHH-HHHhhcCCCcEEEEEeCCHHHHHHHHHHH-hhccCCCCCeEEEEcchhhhhccCCCccEEEE
Q 039591 132 KKVAFVG-SGPMPLTSI-VMAKNHLKATHFDNFDIDEAANNVARRIV-ATDFEFEKRMKFLTGDILQVKEKLGEYDCIFL 208 (284)
Q Consensus 132 ~~VL~iG-sGp~G~~ai-~la~~~~~~~~V~~vDis~~~~~~A~~~~-~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~ 208 (284)
.+|.+|| +|.+|.... .|++ .|.+|+.++.+++.++...+.. ...+.....+++...+..+ .....|+|++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~---~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~e---a~~~aDvVil 74 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAK---AGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAE---AAKRADVVIL 74 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHh---CCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHH---HHhcCCEEEE
Confidence 3789997 897776433 3444 5688999999998876554422 1111001112222223322 2357899999
Q ss_pred cCcCCCCHHHHHHHHHHHHhccccCcEEEEEeccch
Q 039591 209 AALVGMSKEEKMKIIRHIRKYMKDGGILLVRSAKGA 244 (284)
Q Consensus 209 ~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~~~~~g~ 244 (284)
+... ..-..+++.+...++ + .+++...+|.
T Consensus 75 avp~----~~~~~~l~~l~~~l~-~-~vvI~~~ngi 104 (219)
T TIGR01915 75 AVPW----DHVLKTLESLRDELS-G-KLVISPVVPL 104 (219)
T ss_pred ECCH----HHHHHHHHHHHHhcc-C-CEEEEeccCc
Confidence 8764 333566666666554 3 5666655554
No 493
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=93.78 E-value=0.36 Score=41.36 Aligned_cols=79 Identities=10% Similarity=0.114 Sum_probs=47.3
Q ss_pred CCCeEEEecCCCChHHHHH-HHhhcCCCcEEEEEeCCH-------------------HHHHHHHHHHhhccCCCCCeEEE
Q 039591 130 QPKKVAFVGSGPMPLTSIV-MAKNHLKATHFDNFDIDE-------------------AANNVARRIVATDFEFEKRMKFL 189 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~-la~~~~~~~~V~~vDis~-------------------~~~~~A~~~~~~~~~l~~~v~~~ 189 (284)
...+|+.+|+|.+|..... |++ .+-.+++.+|.+. ..++.+++.+++++ ..-+++.+
T Consensus 20 ~~s~VlIiG~gglG~evak~La~--~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lN-p~v~i~~~ 96 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVL--SGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALN-PRVKVSVD 96 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHH--cCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHC-CCCEEEEE
Confidence 3579999999977776554 444 2334688888662 13445555555544 12345555
Q ss_pred Ecchhhhhcc-CCCccEEEEcCc
Q 039591 190 TGDILQVKEK-LGEYDCIFLAAL 211 (284)
Q Consensus 190 ~~D~~~~~~~-l~~fD~V~~~~~ 211 (284)
...+.+...+ +.+||+|+.+..
T Consensus 97 ~~~~~~~~~~~~~~~dvVi~~~~ 119 (197)
T cd01492 97 TDDISEKPEEFFSQFDVVVATEL 119 (197)
T ss_pred ecCccccHHHHHhCCCEEEECCC
Confidence 5544322222 378999998754
No 494
>PRK08655 prephenate dehydrogenase; Provisional
Probab=93.75 E-value=0.52 Score=45.42 Aligned_cols=90 Identities=13% Similarity=0.210 Sum_probs=57.0
Q ss_pred eEEEec-CCCChHHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcCc
Q 039591 133 KVAFVG-SGPMPLTSIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAAL 211 (284)
Q Consensus 133 ~VL~iG-sGp~G~~ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~~ 211 (284)
+|..|| +|-+|.+.....+ ..|.+|+++|.+++.... .....| +.+ ..|..+ .....|+|+++.+
T Consensus 2 kI~IIGG~G~mG~slA~~L~--~~G~~V~v~~r~~~~~~~---~a~~~g-----v~~-~~~~~e---~~~~aDvVIlavp 67 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLK--EKGFEVIVTGRDPKKGKE---VAKELG-----VEY-ANDNID---AAKDADIVIISVP 67 (437)
T ss_pred EEEEEecCCHHHHHHHHHHH--HCCCEEEEEECChHHHHH---HHHHcC-----Cee-ccCHHH---HhccCCEEEEecC
Confidence 789997 6766654333332 256789999999876522 222222 222 233322 2357899999876
Q ss_pred CCCCHHHHHHHHHHHHhccccCcEEEEEe
Q 039591 212 VGMSKEEKMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 212 ~~~~~~~k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
. .....+++.+...+++|.+++-.+
T Consensus 68 ~----~~~~~vl~~l~~~l~~~~iViDvs 92 (437)
T PRK08655 68 I----NVTEDVIKEVAPHVKEGSLLMDVT 92 (437)
T ss_pred H----HHHHHHHHHHHhhCCCCCEEEEcc
Confidence 5 333678889999999998766544
No 495
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.74 E-value=1.3 Score=38.00 Aligned_cols=105 Identities=16% Similarity=0.222 Sum_probs=63.2
Q ss_pred CCCeEEEecCCCChHHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh---------c-
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNH-LKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK---------E- 198 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~-~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~---------~- 198 (284)
.+++|+..|++ .|+.. .+++.. ..|.+|++++.+++......+..... .++.++.+|+.+.. .
T Consensus 4 ~~~~vlItGa~-g~iG~-~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~ 77 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGY-AVAYFALKEGAQVCINSRNENKLKRMKKTLSKY----GNIHYVVGDVSSTESARNVIEKAAK 77 (238)
T ss_pred CCcEEEEECCC-chHHH-HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEECCCCCHHHHHHHHHHHHH
Confidence 46799999986 44332 333211 26889999999998776554333321 35788888877521 0
Q ss_pred cCCCccEEEEcCcCCC--CHHH--------------HHHHHHHHHhccccCcEEEEEe
Q 039591 199 KLGEYDCIFLAALVGM--SKEE--------------KMKIIRHIRKYMKDGGILLVRS 240 (284)
Q Consensus 199 ~l~~fD~V~~~~~~~~--~~~~--------------k~~~l~~~~~~L~pGG~lv~~~ 240 (284)
..+..|.++.++.... ...+ ...+++.+.+.++++|.+++.+
T Consensus 78 ~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 78 VLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 1245798887764321 0011 1234566667778888877766
No 496
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.73 E-value=0.66 Score=38.87 Aligned_cols=90 Identities=14% Similarity=0.128 Sum_probs=53.8
Q ss_pred eEEEecCCCChHHHH-HHHhhcCCCc-EEEEEeCCH------------------HHHHHHHHHHhhccCCCCCeEEEEcc
Q 039591 133 KVAFVGSGPMPLTSI-VMAKNHLKAT-HFDNFDIDE------------------AANNVARRIVATDFEFEKRMKFLTGD 192 (284)
Q Consensus 133 ~VL~iGsGp~G~~ai-~la~~~~~~~-~V~~vDis~------------------~~~~~A~~~~~~~~~l~~~v~~~~~D 192 (284)
+|+.+|||.+|.... .|++ .|. +++.+|.|. ...+.+++.+++++ ..-+++.+...
T Consensus 1 ~VlViG~GglGs~ia~~La~---~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~ln-p~v~i~~~~~~ 76 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLAR---SGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREIN-PFVKIEAINIK 76 (174)
T ss_pred CEEEECcCHHHHHHHHHHHH---cCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHC-CCCEEEEEEee
Confidence 589999997776544 3555 344 699999885 34555555555544 12345555544
Q ss_pred hhhhh--ccCCCccEEEEcCcCCCCHHHHHHHHHHHHhc
Q 039591 193 ILQVK--EKLGEYDCIFLAALVGMSKEEKMKIIRHIRKY 229 (284)
Q Consensus 193 ~~~~~--~~l~~fD~V~~~~~~~~~~~~k~~~l~~~~~~ 229 (284)
+.... .-++.+|+|+.+... .+.|..+.+.+.+.
T Consensus 77 ~~~~~~~~~l~~~DlVi~~~d~---~~~r~~i~~~~~~~ 112 (174)
T cd01487 77 IDENNLEGLFGDCDIVVEAFDN---AETKAMLAESLLGN 112 (174)
T ss_pred cChhhHHHHhcCCCEEEECCCC---HHHHHHHHHHHHHH
Confidence 43211 123789999988433 34555566666654
No 497
>PRK07109 short chain dehydrogenase; Provisional
Probab=93.73 E-value=1.1 Score=41.43 Aligned_cols=76 Identities=14% Similarity=0.153 Sum_probs=51.9
Q ss_pred CCCeEEEecCCCChHHHHH---HHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhh---------
Q 039591 130 QPKKVAFVGSGPMPLTSIV---MAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVK--------- 197 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~---la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~--------- 197 (284)
.+++|+..|++ .|+-... +++ .|.+|+.++.+++.++...+.+...+ .++.++.+|+.+..
T Consensus 7 ~~k~vlITGas-~gIG~~la~~la~---~G~~Vvl~~R~~~~l~~~~~~l~~~g---~~~~~v~~Dv~d~~~v~~~~~~~ 79 (334)
T PRK07109 7 GRQVVVITGAS-AGVGRATARAFAR---RGAKVVLLARGEEGLEALAAEIRAAG---GEALAVVADVADAEAVQAAADRA 79 (334)
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHcC---CcEEEEEecCCCHHHHHHHHHHH
Confidence 45689999976 5544322 333 67899999999988876665555433 56888888876531
Q ss_pred -ccCCCccEEEEcCcC
Q 039591 198 -EKLGEYDCIFLAALV 212 (284)
Q Consensus 198 -~~l~~fD~V~~~~~~ 212 (284)
..+++.|+++.++..
T Consensus 80 ~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 80 EEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHCCCCCEEEECCCc
Confidence 123679999988754
No 498
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=93.71 E-value=0.59 Score=34.49 Aligned_cols=87 Identities=13% Similarity=0.154 Sum_probs=54.5
Q ss_pred eEEEecCCCChHHHHH-HHhhcCCC---cEEE-EEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEE
Q 039591 133 KVAFVGSGPMPLTSIV-MAKNHLKA---THFD-NFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIF 207 (284)
Q Consensus 133 ~VL~iGsGp~G~~ai~-la~~~~~~---~~V~-~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~ 207 (284)
+|.+||+|-+|..-.. +.+ .+ .+|+ +.+.+++..+...+... +.+...+..+.. +..|+||
T Consensus 1 kI~iIG~G~mg~al~~~l~~---~g~~~~~v~~~~~r~~~~~~~~~~~~~--------~~~~~~~~~~~~---~~advvi 66 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLA---SGIKPHEVIIVSSRSPEKAAELAKEYG--------VQATADDNEEAA---QEADVVI 66 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHH---TTS-GGEEEEEEESSHHHHHHHHHHCT--------TEEESEEHHHHH---HHTSEEE
T ss_pred CEEEECCCHHHHHHHHHHHH---CCCCceeEEeeccCcHHHHHHHHHhhc--------cccccCChHHhh---ccCCEEE
Confidence 6889999966643322 333 44 7888 44999998877665421 344443444433 3689999
Q ss_pred EcCcCCCCHHHHHHHHHHHHhccccCcEEEE
Q 039591 208 LAALVGMSKEEKMKIIRHIRKYMKDGGILLV 238 (284)
Q Consensus 208 ~~~~~~~~~~~k~~~l~~~~~~L~pGG~lv~ 238 (284)
++... ..-.++++++ ....++..++-
T Consensus 67 lav~p----~~~~~v~~~i-~~~~~~~~vis 92 (96)
T PF03807_consen 67 LAVKP----QQLPEVLSEI-PHLLKGKLVIS 92 (96)
T ss_dssp E-S-G----GGHHHHHHHH-HHHHTTSEEEE
T ss_pred EEECH----HHHHHHHHHH-hhccCCCEEEE
Confidence 98654 3446788888 67777777663
No 499
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.70 E-value=0.086 Score=53.36 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=29.0
Q ss_pred CCCeEEEecCCCChHHHHHHHhhcCCCcEEEEEeCCH
Q 039591 130 QPKKVAFVGSGPMPLTSIVMAKNHLKATHFDNFDIDE 166 (284)
Q Consensus 130 ~~~~VL~iGsGp~G~~ai~la~~~~~~~~V~~vDis~ 166 (284)
.+++|+.||+||.|+++...++ ..|.+|+.+|.++
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~--~~G~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLA--RNGVAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHH--HCCCeEEEEecCC
Confidence 4689999999999999887655 2688999999764
No 500
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=93.70 E-value=0.45 Score=46.54 Aligned_cols=98 Identities=10% Similarity=0.154 Sum_probs=64.3
Q ss_pred CeEEEecCCCChHH-HHHHHhhcCCCcEEEEEeCCHHHHHHHHHHHhhccCCCCCeEEEEcchhhhhccCCCccEEEEcC
Q 039591 132 KKVAFVGSGPMPLT-SIVMAKNHLKATHFDNFDIDEAANNVARRIVATDFEFEKRMKFLTGDILQVKEKLGEYDCIFLAA 210 (284)
Q Consensus 132 ~~VL~iGsGp~G~~-ai~la~~~~~~~~V~~vDis~~~~~~A~~~~~~~~~l~~~v~~~~~D~~~~~~~l~~fD~V~~~~ 210 (284)
.+|-+||.|-+|.. +.-|++ .|.+|+++|.+++..+...+.....| . ..+ ....+..++...+++.|+|++.-
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~---~G~~V~V~NRt~~k~~~l~~~~~~~G-a-~~~-~~a~s~~e~v~~l~~~dvIi~~v 80 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAE---KGFPISVYNRTTSKVDETVERAKKEG-N-LPL-YGFKDPEDFVLSIQKPRSVIILV 80 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHh---CCCeEEEECCCHHHHHHHHHhhhhcC-C-ccc-ccCCCHHHHHhcCCCCCEEEEEC
Confidence 47999999977743 333444 68899999999998876554322112 1 111 23455666555566799999875
Q ss_pred cCCCCHHHHHHHHHHHHhccccCcEEEE
Q 039591 211 LVGMSKEEKMKIIRHIRKYMKDGGILLV 238 (284)
Q Consensus 211 ~~~~~~~~k~~~l~~~~~~L~pGG~lv~ 238 (284)
..+ +.-..++..+...|+||-+++-
T Consensus 81 ~~~---~aV~~Vi~gl~~~l~~G~iiID 105 (493)
T PLN02350 81 KAG---APVDQTIKALSEYMEPGDCIID 105 (493)
T ss_pred CCc---HHHHHHHHHHHhhcCCCCEEEE
Confidence 542 3445677888888998876654
Done!