Query 039593
Match_columns 144
No_of_seqs 22 out of 24
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 19:16:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039593.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039593hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bww_A Protein of unknown func 47.5 5.3 0.00018 33.3 0.8 33 28-60 200-245 (307)
2 3mr7_A Adenylate/guanylate cyc 35.0 3.6 0.00012 28.9 -1.8 43 17-64 99-141 (189)
3 3r5g_A CYAB; adenylyl cyclase, 27.0 8 0.00027 27.0 -1.2 31 29-61 130-160 (198)
4 1nkz_B Light-harvesting protei 21.0 54 0.0019 20.3 2.0 22 82-103 9-37 (41)
5 2l34_A TYRO protein tyrosine k 20.9 72 0.0025 18.6 2.4 20 121-141 13-32 (33)
6 1bin_A Leghemoglobin A; heme, 17.6 92 0.0031 20.3 2.7 45 46-90 2-46 (143)
7 2wy4_A Single domain haemoglob 17.4 1.1E+02 0.0038 20.0 3.0 43 48-90 2-44 (140)
8 2vhb_A Hemoglobin; heme, respi 17.3 87 0.003 20.8 2.5 44 48-91 3-46 (146)
9 1lgh_B LH II, B800/850, light 17.1 74 0.0025 20.1 2.0 22 82-103 14-42 (45)
10 3c2g_A SYS-1 protein; beta-cat 17.1 55 0.0019 29.8 1.8 15 119-133 492-506 (619)
No 1
>3bww_A Protein of unknown function DUF692/COG3220; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.20A {Haemophilus somnus}
Probab=47.51 E-value=5.3 Score=33.26 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=6.6
Q ss_pred eeeeeeeecchhh------------hHhhhCCCccc-hhhhhhccc
Q 039593 28 LKEMYVIGHGVET------------AQKLTGSTPHD-QLLIQISNS 60 (144)
Q Consensus 28 ~kei~vfgHG~et------------A~KL~GSTPhD-qlLIqtSdS 60 (144)
-.||.+=||..|. -+|.+|-+||+ +++|+|-+.
T Consensus 200 V~eiHlAGh~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lliDTH~~ 245 (307)
T 3bww_A 200 VNYIHIAGHDDEHAATEVQIQTSESFNKIKGDLRHLPPLLVDTHGE 245 (307)
T ss_dssp EEEEEECC--------------------------------------
T ss_pred hEEEeccCCccccccccccccccccccccccccccCCCeeEECCCC
Confidence 3689999997554 37999999999 699999654
No 2
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.60A {Ruegeria pomeroyi}
Probab=34.95 E-value=3.6 Score=28.90 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=31.9
Q ss_pred HHhhcceeeeeeeeeeeeecchhhhHhhhCCCccchhhhhhccchhhH
Q 039593 17 SITCGSSIMFYLKEMYVIGHGVETAQKLTGSTPHDQLLIQISNSFAGL 64 (144)
Q Consensus 17 AlT~G~LmmFy~kei~vfgHG~etA~KL~GSTPhDqlLIqtSdSFsGl 64 (144)
++.+|-.+.- +-.++|....+|.+|...++..| |..|++..-+
T Consensus 99 Gi~~G~v~~g---~~~~~G~~Vn~AaRl~~~a~~~~--I~vs~~~~~~ 141 (189)
T 3mr7_A 99 GINIGDIVLE---DGDIFGDAVNVAARLEAISEPGA--ICVSDIVHQI 141 (189)
T ss_dssp EEEEEEEEEC---SSCEESHHHHHHHHHHHHSCTTC--EEEEHHHHHH
T ss_pred EEEEEEEEEE---CCeEEChHHHHHHHHHhhCCCCe--EEECHHHHHh
Confidence 3445554443 67899999999999999999998 5567665443
No 3
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa} SCOP: d.58.29.0
Probab=27.01 E-value=8 Score=27.02 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=25.1
Q ss_pred eeeeeeecchhhhHhhhCCCccchhhhhhccch
Q 039593 29 KEMYVIGHGVETAQKLTGSTPHDQLLIQISNSF 61 (144)
Q Consensus 29 kei~vfgHG~etA~KL~GSTPhDqlLIqtSdSF 61 (144)
.+..++|....+|.+|...++..|.+| |++.
T Consensus 130 ~~~~v~G~~Vn~Aarl~~~a~~~~I~v--s~~~ 160 (198)
T 3r5g_A 130 MDYTIIGREVNLASRLESASEAGEILI--SHET 160 (198)
T ss_dssp EEEEEESHHHHHHHHHHHHCCTTCEEE--EHHH
T ss_pred eEEEEECcHHHHHHHHHhhCCCCcEEE--CHHH
Confidence 477899999999999999888887665 4443
No 4
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=21.02 E-value=54 Score=20.33 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=14.2
Q ss_pred hhhhhhhhhh-------hHhHHHHHHHHH
Q 039593 82 AEFQSFFAKG-------CMLVHVSMALWR 103 (144)
Q Consensus 82 refqsFfakg-------c~~lhv~ma~WR 103 (144)
+||++.|-+| +++-|++.-.||
T Consensus 9 ~EfH~~~~~~~~~F~~iA~vAH~l~w~wr 37 (41)
T 1nkz_B 9 EELHKYVIDGTRVFLGLALVAHFLAFSAT 37 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566555555 456688877776
No 5
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=20.94 E-value=72 Score=18.65 Aligned_cols=20 Identities=40% Similarity=0.610 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHhhhhccc
Q 039593 121 VVGDLALALSWVFFLVYSWRE 141 (144)
Q Consensus 121 ~vGDi~lalSWvffLvyswre 141 (144)
++||++..+ =+-.+||-|++
T Consensus 13 Vvgdi~~t~-~i~~~vy~~~r 32 (33)
T 2l34_A 13 VVGDLVLTV-LIALAVYFLGR 32 (33)
T ss_dssp HHHHHHHHH-HHHHHHHHHCC
T ss_pred eHHHHHHHH-HHHHHHhheec
Confidence 578887554 56667888875
No 6
>1bin_A Leghemoglobin A; heme, nitrogen fixation, multigene family, oxygen transport; HET: HEM; 2.20A {Glycine max} SCOP: a.1.1.2 PDB: 1fsl_A*
Probab=17.64 E-value=92 Score=20.33 Aligned_cols=45 Identities=11% Similarity=0.069 Sum_probs=30.9
Q ss_pred CCCccchhhhhhccchhhHHHHHHHHHHHHHHHhcchhhhhhhhh
Q 039593 46 GSTPHDQLLIQISNSFAGLLLFVVGFLLFMVAFVKDAEFQSFFAK 90 (144)
Q Consensus 46 GSTPhDqlLIqtSdSFsGlLLF~iGfllfMVafVkdrefqsFfak 90 (144)
|=||.|.-+||.|=.--.=-.=.+|--.|---|.+++|.+.+|..
T Consensus 2 ~lt~~~~~~v~~sw~~v~~~~~~~~~~fy~rlf~~~P~~~~~F~~ 46 (143)
T 1bin_A 2 AFTEKQDALVSSSFEAFKANIPQYSVVFYTSILEKAPAAKDLFSF 46 (143)
T ss_dssp CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCTTHHHHSGG
T ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHChHHHHHhHh
Confidence 446777777775533221124567877777778899999999986
No 7
>2wy4_A Single domain haemoglobin; heme, transport, oxygen transport; HET: HEM; 1.35A {Campylobacter jejuni}
Probab=17.38 E-value=1.1e+02 Score=20.02 Aligned_cols=43 Identities=12% Similarity=0.027 Sum_probs=28.4
Q ss_pred CccchhhhhhccchhhHHHHHHHHHHHHHHHhcchhhhhhhhh
Q 039593 48 TPHDQLLIQISNSFAGLLLFVVGFLLFMVAFVKDAEFQSFFAK 90 (144)
Q Consensus 48 TPhDqlLIqtSdSFsGlLLF~iGfllfMVafVkdrefqsFfak 90 (144)
||.|.-+|+.|=.--.--.=.+|-..|---|.+++|.+.+|.+
T Consensus 2 t~~~~~~v~~sw~~v~~~~~~~~~~fy~rlf~~~P~~~~~F~~ 44 (140)
T 2wy4_A 2 TKEQIQIIKDCVPILQKNGEDLTNEFYKIMFNDYPEVKPMFNM 44 (140)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGSCH
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHChHHHHhcCc
Confidence 4555556665432221134567877787788899999999973
No 8
>2vhb_A Hemoglobin; heme, respiratory protein, oxygen transport; HET: HEM; 1.76A {Vitreoscilla stercoraria} SCOP: a.1.1.2 PDB: 1vhb_A* 3vhb_A* 4vhb_A*
Probab=17.26 E-value=87 Score=20.83 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=26.6
Q ss_pred CccchhhhhhccchhhHHHHHHHHHHHHHHHhcchhhhhhhhhh
Q 039593 48 TPHDQLLIQISNSFAGLLLFVVGFLLFMVAFVKDAEFQSFFAKG 91 (144)
Q Consensus 48 TPhDqlLIqtSdSFsGlLLF~iGfllfMVafVkdrefqsFfakg 91 (144)
||.|.-+|+.|=.--.=-.=.+|--.|---|..++|.+.+|.++
T Consensus 3 t~~~~~~v~~sw~~v~~~~~~~~~~fy~rlf~~~P~~~~~F~~~ 46 (146)
T 2vhb_A 3 DQQTINIIKATVPVLKEHGVTITTTFYKNLFAKHPEVRPLFDMG 46 (146)
T ss_dssp CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCGGGGGGC---
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHChHHHHhcCcc
Confidence 45555566544221111245677777877888999999999863
No 9
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=17.11 E-value=74 Score=20.10 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=13.3
Q ss_pred hhhhhhhhhh-------hHhHHHHHHHHH
Q 039593 82 AEFQSFFAKG-------CMLVHVSMALWR 103 (144)
Q Consensus 82 refqsFfakg-------c~~lhv~ma~WR 103 (144)
+||++.|-+| +++-|++.-.||
T Consensus 14 ~EfH~~~~~~~~~F~~iA~vAH~L~~~wr 42 (45)
T 1lgh_B 14 IAVHDQFKTTFSAFIILAAVAHVLVWVWK 42 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3555555554 456677777776
No 10
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=17.08 E-value=55 Score=29.82 Aligned_cols=15 Identities=40% Similarity=0.984 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHHHH
Q 039593 119 RQVVGDLALALSWVF 133 (144)
Q Consensus 119 rq~vGDi~lalSWvf 133 (144)
|..||-|+.|+||++
T Consensus 492 ~NLvGHIciA~sWa~ 506 (619)
T 3c2g_A 492 ENLIGHICAAYSWVF 506 (619)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhh
Confidence 678999999999987
Done!