BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039599
(293 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 60 LRSFPSNLHFVSPVT-IDFTSCINLTDFPH------ISG------NITRLYLDETAIEEV 106
LR+ P+++ ++ + + +C LT+ P SG N+ L L+ T I +
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198
Query: 107 PSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFP 155
P+SI L NLK L+I R + L + +I L L L GC L +P
Sbjct: 199 PASIANLQNLKSLKI-RNSPLSALGPAIHHLPKLEELDLRGCTALRNYP 246
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 27/140 (19%)
Query: 5 IESIFLNLSTIKGINLNLRAFSNMSNLRV----LKFYIPEISVHMSIEEQLLDSKGCKIL 60
++S+ L + I+ + ++ N+ +L++ L P I +EE LD +GC L
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE--LDLRGCTAL 242
Query: 61 RSFPSNLHFVSPVT-IDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLL 119
R++P +P+ + C NL P LD I LT L+ L
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLLTLP----------LD----------IHRLTQLEKL 282
Query: 120 RINRCTRLKRVSTSICKLKS 139
+ C L R+ + I +L +
Sbjct: 283 DLRGCVNLSRLPSLIAQLPA 302
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 101 TAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEK 160
TA+ P LK L + C+ L + I +L L L GC+NL R P + +
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299
Query: 161 M 161
+
Sbjct: 300 L 300
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 78/221 (35%), Gaps = 38/221 (17%)
Query: 74 TIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTS 133
TID L D + L L + +P+SI L L+ L I C L +
Sbjct: 110 TIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELP-- 167
Query: 134 ICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLG--RTTITEQR--PSSFENVKGLE 189
+ L + A G EH +NL R T R P+S N++ L+
Sbjct: 168 ----EPLASTDASG--------------EHQGLVNLQSLRLEWTGIRSLPASIANLQNLK 209
Query: 190 TLGF--SELDNLSDNIGNFKSFEYMGAHGSAIXXXXXXXXXXXXXXXXXXXXXXXXXXXX 247
+L S L L I + E + G
Sbjct: 210 SLKIRNSPLSALGPAIHHLPKLEELDLRGCT----------ALRNYPPIFGGRAPLKRLI 259
Query: 248 XNNCA-LTSIPQEIGYLSSLEWLHLRG-NNLEGLPASIKQI 286
+C+ L ++P +I L+ LE L LRG NL LP+ I Q+
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 249 NNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESL 292
+ L +P + LE L L N L LPASI ++RL L
Sbjct: 112 DAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLREL 155
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 8/58 (13%)
Query: 89 ISGNI------TRLYLDETAIEEVPSSIKCLTNLKLLRI--NRCTRLKRVSTSICKLK 138
IS NI TRLYL+ ++ E+P+ IK L+NL++L + NR T L S +LK
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 269 LHLRGNNLEGLPASIKQISRLESLD 293
L+L GN+L LPA IK +S L LD
Sbjct: 252 LYLNGNSLTELPAEIKNLSNLRVLD 276
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 249 NNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASI 283
N +LT +P EI LS+L L L N L LPA +
Sbjct: 255 NGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL 289
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 255 SIPQEIGYLSSLEWLHLRGNNLEG-LPASIKQISRLESLD 293
SIP E+G L L L L N L+G +P ++ ++ L +D
Sbjct: 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 255 SIPQEIGYLSSLEWLHLRGNNLEG-LPASIKQISRLESLD 293
SIP E+G L L L L N L+G +P ++ ++ L +D
Sbjct: 668 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 707
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 93 ITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICK-LKSLIALSAYGCLN 150
+ L+L IE +PS + + +L+ L + RL +S + L +L L+ C N
Sbjct: 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-N 196
Query: 151 LERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETL 191
L P +L + L++++L ++ RP SF+ + L+ L
Sbjct: 197 LREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 253 LTSIP-QEIGYLSSLEWLHLRGNNLEGLPA-SIKQISRLESLD 293
LT++P Q YLS L L LR N +E +P+ + ++ L LD
Sbjct: 95 LTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLD 137
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 253 LTSIP-QEIGYLSSLEWLHLRGNNLEGLPA-SIKQISRLESLD 293
LT++P Q YLS L L LR N +E +P+ + ++ L LD
Sbjct: 95 LTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLD 137
>pdb|3R2G|A Chain A, Crystal Structure Of Inosine 5' Monophosphate
Dehydrogenase From Legionella Pneumophila
Length = 361
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 2 TDAIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCK 58
TD + + LNL I N++ SNM+N K + + M+IEE + + K CK
Sbjct: 33 TDRLGKLTLNLPVISA-NMDTITESNMANFMHSKGAMGALHRFMTIEENIQEFKKCK 88
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 134 ICKLKSLIALSAYGC--LNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETL 191
+C + L C L LE+ P+ L L ++L ITE + F+N+K L TL
Sbjct: 24 VCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTL 81
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 134 ICKLKSLIALSAYGC--LNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETL 191
+C + L C L LE+ P+ L L ++L ITE + F+N+K L TL
Sbjct: 24 VCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTL 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,995,989
Number of Sequences: 62578
Number of extensions: 240167
Number of successful extensions: 673
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 638
Number of HSP's gapped (non-prelim): 45
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)