Query 039599
Match_columns 293
No_of_seqs 177 out of 2544
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 11:13:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039599.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039599hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.6E-29 3.4E-34 245.0 17.2 286 4-292 70-385 (968)
2 PLN00113 leucine-rich repeat r 100.0 3E-29 6.4E-34 243.1 15.7 284 10-293 98-410 (968)
3 KOG4194 Membrane glycoprotein 99.9 1E-27 2.2E-32 206.1 5.3 284 9-293 82-422 (873)
4 KOG4194 Membrane glycoprotein 99.9 2.5E-27 5.4E-32 203.7 3.0 286 3-292 125-444 (873)
5 KOG0444 Cytoskeletal regulator 99.9 2.5E-27 5.4E-32 205.6 -4.3 268 11-293 61-368 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 7.7E-26 1.7E-30 196.4 -3.2 282 5-290 9-319 (1255)
7 PLN03210 Resistant to P. syrin 99.9 2.8E-22 6.1E-27 195.9 21.1 288 1-292 530-898 (1153)
8 PLN03210 Resistant to P. syrin 99.8 7.1E-20 1.5E-24 179.1 18.1 214 49-275 683-904 (1153)
9 KOG0472 Leucine-rich repeat pr 99.8 3.4E-23 7.3E-28 171.3 -5.5 239 49-292 47-302 (565)
10 PRK15387 E3 ubiquitin-protein 99.8 1.5E-19 3.3E-24 166.4 14.7 251 10-285 206-467 (788)
11 KOG0472 Leucine-rich repeat pr 99.8 9.1E-23 2E-27 168.7 -6.4 101 177-277 426-541 (565)
12 PRK15387 E3 ubiquitin-protein 99.8 5.4E-18 1.2E-22 156.3 13.5 239 30-293 202-451 (788)
13 PRK15370 E3 ubiquitin-protein 99.8 3.2E-18 6.9E-23 158.4 10.3 237 10-278 183-429 (754)
14 KOG0618 Serine/threonine phosp 99.7 4.3E-19 9.3E-24 160.5 0.1 210 49-275 243-487 (1081)
15 PRK15370 E3 ubiquitin-protein 99.7 4E-17 8.6E-22 151.2 10.8 225 30-285 179-409 (754)
16 KOG0618 Serine/threonine phosp 99.7 3.3E-18 7.1E-23 154.8 -0.6 252 25-293 195-482 (1081)
17 KOG0617 Ras suppressor protein 99.7 3.2E-18 7E-23 126.6 -2.6 157 92-261 34-193 (264)
18 KOG0617 Ras suppressor protein 99.6 9.1E-18 2E-22 124.2 -2.2 160 62-224 25-190 (264)
19 cd00116 LRR_RI Leucine-rich re 99.6 1.3E-17 2.7E-22 142.4 -2.5 235 23-278 17-292 (319)
20 KOG4237 Extracellular matrix p 99.6 1.3E-16 2.7E-21 132.3 -1.3 136 83-218 58-199 (498)
21 cd00116 LRR_RI Leucine-rich re 99.5 3.7E-16 8E-21 133.4 -1.1 215 71-293 24-284 (319)
22 KOG4237 Extracellular matrix p 99.5 1.8E-16 3.8E-21 131.5 -6.0 242 8-277 70-359 (498)
23 KOG0532 Leucine-rich repeat (L 99.4 2.2E-14 4.7E-19 124.3 -1.9 198 75-289 55-259 (722)
24 KOG1909 Ran GTPase-activating 99.3 1.5E-13 3.2E-18 112.6 -4.6 135 135-276 154-310 (382)
25 KOG1259 Nischarin, modulator o 99.2 3.2E-12 7E-17 103.1 2.2 195 70-281 214-416 (490)
26 KOG0532 Leucine-rich repeat (L 99.2 1E-12 2.2E-17 114.1 -2.4 181 96-292 55-239 (722)
27 COG4886 Leucine-rich repeat (L 99.2 3.4E-11 7.5E-16 105.9 6.7 192 74-280 97-293 (394)
28 PF14580 LRR_9: Leucine-rich r 99.1 3.7E-11 8E-16 92.1 2.3 107 136-255 17-127 (175)
29 KOG3207 Beta-tubulin folding c 99.1 2.9E-11 6.3E-16 102.1 1.0 201 71-277 122-339 (505)
30 COG4886 Leucine-rich repeat (L 99.1 1.5E-10 3.2E-15 101.9 5.2 184 95-293 97-283 (394)
31 KOG3207 Beta-tubulin folding c 99.1 3.5E-11 7.7E-16 101.6 1.0 180 90-278 120-315 (505)
32 PF14580 LRR_9: Leucine-rich r 99.0 3.1E-10 6.6E-15 87.0 5.2 122 70-193 19-147 (175)
33 KOG1259 Nischarin, modulator o 98.9 3.7E-10 8.1E-15 91.4 1.2 196 49-258 216-416 (490)
34 KOG4658 Apoptotic ATPase [Sign 98.9 1.7E-09 3.6E-14 102.6 4.6 192 29-222 523-732 (889)
35 PLN03150 hypothetical protein; 98.9 4E-09 8.6E-14 97.6 7.0 104 93-196 420-525 (623)
36 KOG1909 Ran GTPase-activating 98.9 2.1E-10 4.6E-15 94.3 -1.3 214 71-292 31-303 (382)
37 KOG0531 Protein phosphatase 1, 98.8 1.2E-09 2.7E-14 96.5 0.1 192 71-278 73-269 (414)
38 PLN03150 hypothetical protein; 98.7 1.6E-08 3.5E-13 93.6 6.2 83 140-222 420-505 (623)
39 PF13855 LRR_8: Leucine rich r 98.7 2.1E-08 4.6E-13 63.3 4.0 58 92-149 2-60 (61)
40 PF13855 LRR_8: Leucine rich r 98.6 2.8E-08 6.1E-13 62.7 3.4 61 114-174 1-61 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.6 5.7E-08 1.2E-12 92.4 5.7 199 92-291 546-774 (889)
42 KOG2120 SCF ubiquitin ligase, 98.6 1E-09 2.3E-14 88.7 -5.9 153 140-293 187-369 (419)
43 PF12799 LRR_4: Leucine Rich r 98.5 7E-08 1.5E-12 56.1 3.1 41 241-281 1-41 (44)
44 KOG0531 Protein phosphatase 1, 98.5 1.5E-08 3.2E-13 89.6 -0.1 185 90-292 71-260 (414)
45 KOG2120 SCF ubiquitin ligase, 98.4 8.8E-09 1.9E-13 83.4 -4.2 174 92-274 186-373 (419)
46 KOG4341 F-box protein containi 98.4 4.3E-09 9.2E-14 88.8 -6.4 275 11-290 144-455 (483)
47 KOG2982 Uncharacterized conser 98.4 9.4E-08 2E-12 77.6 1.1 197 72-277 47-262 (418)
48 PRK15386 type III secretion pr 98.2 3.1E-06 6.6E-11 73.1 6.6 133 25-172 48-187 (426)
49 KOG4579 Leucine-rich repeat (L 98.2 1.4E-07 3.1E-12 67.9 -1.6 103 164-278 29-137 (177)
50 COG5238 RNA1 Ran GTPase-activa 98.1 6.6E-08 1.4E-12 77.5 -4.6 238 23-278 24-317 (388)
51 KOG1859 Leucine-rich repeat pr 98.1 1.5E-07 3.2E-12 85.0 -4.0 87 132-222 181-269 (1096)
52 COG5238 RNA1 Ran GTPase-activa 98.1 8.3E-07 1.8E-11 71.3 0.6 199 71-278 31-286 (388)
53 KOG1859 Leucine-rich repeat pr 98.0 1E-07 2.2E-12 86.0 -6.5 101 164-277 166-267 (1096)
54 PRK15386 type III secretion pr 98.0 1.9E-05 4.1E-10 68.4 7.2 65 49-123 54-121 (426)
55 PF12799 LRR_4: Leucine Rich r 97.9 1.5E-05 3.2E-10 46.3 3.6 36 92-127 2-37 (44)
56 KOG4341 F-box protein containi 97.8 4.1E-07 9E-12 77.0 -6.2 236 49-292 140-431 (483)
57 KOG3665 ZYG-1-like serine/thre 97.8 9.1E-06 2E-10 75.7 1.8 81 92-174 123-207 (699)
58 KOG3665 ZYG-1-like serine/thre 97.8 8.1E-06 1.7E-10 76.1 0.9 107 114-222 122-235 (699)
59 KOG2982 Uncharacterized conser 97.7 1E-05 2.2E-10 66.0 1.2 188 95-290 49-252 (418)
60 KOG1644 U2-associated snRNP A' 97.7 4E-05 8.6E-10 59.1 3.4 20 203-222 60-79 (233)
61 KOG4579 Leucine-rich repeat (L 97.6 5.6E-06 1.2E-10 59.8 -1.8 100 72-174 29-135 (177)
62 KOG1644 U2-associated snRNP A' 97.5 0.00018 3.9E-09 55.6 5.2 83 112-195 62-149 (233)
63 KOG2739 Leucine-rich acidic nu 96.9 0.00046 1E-08 55.5 1.8 87 158-255 39-130 (260)
64 KOG2123 Uncharacterized conser 96.7 0.00018 3.9E-09 58.4 -1.9 98 91-192 19-123 (388)
65 PF00560 LRR_1: Leucine Rich R 96.7 0.00045 9.8E-09 33.4 0.0 18 266-283 2-19 (22)
66 KOG2123 Uncharacterized conser 96.7 0.00012 2.5E-09 59.5 -3.3 77 205-293 39-123 (388)
67 KOG1947 Leucine rich repeat pr 96.4 0.00034 7.3E-09 63.1 -2.4 35 113-147 187-223 (482)
68 PF00560 LRR_1: Leucine Rich R 96.4 0.0013 2.8E-08 31.8 0.7 21 242-262 1-21 (22)
69 KOG2739 Leucine-rich acidic nu 96.4 0.0023 5.1E-08 51.5 2.5 102 184-293 41-149 (260)
70 PF13306 LRR_5: Leucine rich r 96.4 0.011 2.5E-07 42.8 6.1 14 109-122 7-20 (129)
71 PF13306 LRR_5: Leucine rich r 96.2 0.013 2.7E-07 42.6 5.4 61 109-171 30-90 (129)
72 PF13504 LRR_7: Leucine rich r 96.1 0.0031 6.7E-08 28.3 1.2 16 265-280 2-17 (17)
73 KOG4308 LRR-containing protein 95.5 0.00012 2.6E-09 65.5 -9.5 178 93-278 89-304 (478)
74 smart00369 LRR_TYP Leucine-ric 94.4 0.045 9.8E-07 27.4 2.3 21 263-283 1-21 (26)
75 smart00370 LRR Leucine-rich re 94.4 0.045 9.8E-07 27.4 2.3 21 263-283 1-21 (26)
76 KOG1947 Leucine rich repeat pr 94.0 0.014 3.1E-07 52.5 -0.1 35 137-171 187-223 (482)
77 KOG4308 LRR-containing protein 92.8 0.00066 1.4E-08 60.8 -10.5 158 115-278 88-276 (478)
78 KOG3864 Uncharacterized conser 91.6 0.03 6.4E-07 43.7 -1.3 34 116-149 103-136 (221)
79 smart00364 LRR_BAC Leucine-ric 90.9 0.16 3.4E-06 25.4 1.3 18 264-281 2-19 (26)
80 PF13516 LRR_6: Leucine Rich r 87.3 0.16 3.4E-06 24.8 -0.2 14 264-277 2-15 (24)
81 KOG0473 Leucine-rich repeat pr 87.2 0.041 8.8E-07 44.0 -3.6 84 110-196 38-121 (326)
82 smart00365 LRR_SD22 Leucine-ri 83.5 0.98 2.1E-05 22.6 1.6 17 263-279 1-17 (26)
83 KOG0473 Leucine-rich repeat pr 82.8 0.064 1.4E-06 42.9 -4.3 67 156-223 36-104 (326)
84 KOG3864 Uncharacterized conser 78.7 0.8 1.7E-05 35.9 0.5 64 5-85 103-166 (221)
85 smart00368 LRR_RI Leucine rich 76.2 2.4 5.2E-05 21.5 1.7 15 264-278 2-16 (28)
86 smart00367 LRR_CC Leucine-rich 74.9 2 4.4E-05 21.2 1.3 15 70-84 2-16 (26)
87 KOG3763 mRNA export factor TAP 55.7 4.1 8.9E-05 37.0 0.2 13 243-255 272-284 (585)
88 KOG3763 mRNA export factor TAP 36.1 18 0.00039 33.1 1.0 33 92-124 219-254 (585)
89 smart00446 LRRcap occurring C- 23.4 42 0.00091 16.8 0.7 11 283-293 9-19 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.6e-29 Score=244.99 Aligned_cols=286 Identities=21% Similarity=0.245 Sum_probs=228.5
Q ss_pred ceEEEEeecCcccceeechhhccCCccccEEEEeccceee--ecc-----cceEEEeccCCcccccCCCCCCCcCceEEe
Q 039599 4 AIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISV--HMS-----IEEQLLDSKGCKILRSFPSNLHFVSPVTID 76 (293)
Q Consensus 4 ~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~-----~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~ 76 (293)
+|..+ |++++......+..|..+++|++|++++|.+.. +.. -.|++|++++|.+.+.+|.. ..++|++|+
T Consensus 70 ~v~~L--~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~l~~L~~L~ 146 (968)
T PLN00113 70 RVVSI--DLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG-SIPNLETLD 146 (968)
T ss_pred cEEEE--EecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc-ccCCCCEEE
Confidence 45555 888887666666789999999999999998752 221 12999999999887776653 345999999
Q ss_pred ecCCcCCcccCCC---CCCccEEeccccccc-ccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCC
Q 039599 77 FTSCINLTDFPHI---SGNITRLYLDETAIE-EVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLE 152 (293)
Q Consensus 77 l~~~~~~~~~~~~---~~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 152 (293)
+++|.+.+.+|.. +.+|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence 9999877677754 457889999999875 778888999999999999998888888888899999999999998888
Q ss_pred CCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC---ccccccccCccccceecccCCCccCC-CCcC--
Q 039599 153 RFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHGSAISQL-PSLS-- 226 (293)
Q Consensus 153 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~~~~~~~-~~l~-- 226 (293)
.+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++| +.+|..+..+++|++|++++|.+.+. |.+.
T Consensus 227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 306 (968)
T PLN00113 227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306 (968)
T ss_pred cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC
Confidence 88989999999999999999998888888999999999999988 56777888889999999999988765 5522
Q ss_pred -CCCccCccc----------ccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCCC-CchhHhhcccCCCC
Q 039599 227 -SGLVPLSAS----------LLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLEG-LPASIKQISRLESL 292 (293)
Q Consensus 227 -~~l~~l~~~----------~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~-~p~~l~~l~~L~~l 292 (293)
..++.|+++ .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++++ +|..++.+++|+.+
T Consensus 307 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L 385 (968)
T PLN00113 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385 (968)
T ss_pred CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEE
Confidence 445555543 15566778888888887775 77777778888888888888876 77777777666654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=3e-29 Score=243.08 Aligned_cols=284 Identities=20% Similarity=0.233 Sum_probs=236.0
Q ss_pred eecCcccce-eechhhccCCccccEEEEeccceeeecc----cceEEEeccCCcccccCCCCCCCc-CceEEeecCCcCC
Q 039599 10 LNLSTIKGI-NLNLRAFSNMSNLRVLKFYIPEISVHMS----IEEQLLDSKGCKILRSFPSNLHFV-SPVTIDFTSCINL 83 (293)
Q Consensus 10 l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~ 83 (293)
+|+++|... .++...+..+++|++|++++|.+..... ..|++|++++|.+.+.+|..++.. +|++|++++|.+.
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~ 177 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177 (968)
T ss_pred EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence 489988765 4555567799999999999998863322 229999999999888888777644 9999999999877
Q ss_pred cccCCCC---CCccEEeccccccc-ccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhh
Q 039599 84 TDFPHIS---GNITRLYLDETAIE-EVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLE 159 (293)
Q Consensus 84 ~~~~~~~---~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 159 (293)
+.+|..+ .+|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+.
T Consensus 178 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 257 (968)
T PLN00113 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257 (968)
T ss_pred ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence 7777654 47888899999875 6778888999999999999988888888888999999999999988888888899
Q ss_pred ccccCCceecCCCcccccCCCcccccccCceecCCCC---ccccccccCccccceecccCCCccCC-CC-cC--CCCccC
Q 039599 160 KMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHGSAISQL-PS-LS--SGLVPL 232 (293)
Q Consensus 160 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~~~~~~~-~~-l~--~~l~~l 232 (293)
.+++|++|++++|.+.+..|..+..+++|+.|++++| +.+|..+..+++|+.|++++|.+.+. |. +. ++++.|
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 337 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence 9999999999999988888888888899999999888 56777888889999999999888765 44 22 556665
Q ss_pred ccc----------ccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCCC-CchhHhhcccCCCCC
Q 039599 233 SAS----------LLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLEG-LPASIKQISRLESLD 293 (293)
Q Consensus 233 ~~~----------~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~-~p~~l~~l~~L~~ld 293 (293)
+++ .++.+++|+.|++++|.+++ +|.++..+++|+.|++++|++.+ +|..+..+++|+.|+
T Consensus 338 ~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ 410 (968)
T PLN00113 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVR 410 (968)
T ss_pred ECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEE
Confidence 553 25677899999999999987 88889999999999999999997 898899999988763
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=1e-27 Score=206.08 Aligned_cols=284 Identities=22% Similarity=0.248 Sum_probs=170.8
Q ss_pred EeecCcccceeechhhccCCccccEEEEeccceeeecccc-----eEEEeccCCcccccCCCCCCC-cCceEEeecCCcC
Q 039599 9 FLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIE-----EQLLDSKGCKILRSFPSNLHF-VSPVTIDFTSCIN 82 (293)
Q Consensus 9 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----l~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~ 82 (293)
.||+++|..-.+++..|.++++|+.+++..|.+...|.++ ++.|++.+|.+...-.+.+.. +.|+.||++.|.
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~- 160 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL- 160 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-
Confidence 4799999999999999999999999999999988555433 778888777654433333322 255666666555
Q ss_pred CcccCC-CC---CCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccc--------
Q 039599 83 LTDFPH-IS---GNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL-------- 149 (293)
Q Consensus 83 ~~~~~~-~~---~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------- 149 (293)
+.++|. ++ .++++|+|++|.|+.+.. .|..+.+|..|.++.|.++...+..+.++++|+.|++.+|+
T Consensus 161 is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt 240 (873)
T KOG4194|consen 161 ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT 240 (873)
T ss_pred hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh
Confidence 333321 12 145555555555554433 44555555555555555444333444445555555555553
Q ss_pred ----------------cCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC---ccccccccCccccc
Q 039599 150 ----------------NLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL---DNLSDNIGNFKSFE 210 (293)
Q Consensus 150 ----------------~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~~~~~~l~~L~ 210 (293)
+...-...|..+.++++|++..|.+...-...+..++.|+.|+++.| ..-++.|...++|+
T Consensus 241 FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~ 320 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLK 320 (873)
T ss_pred hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccce
Confidence 33222334555556666666666654433344556666777777766 22355666667777
Q ss_pred eecccCCCccCCCC--cC--CCCccCccc----------ccCCccccceeecCCccCCc-CC---cccCCCCCCcEEecc
Q 039599 211 YMGAHGSAISQLPS--LS--SGLVPLSAS----------LLSGLSLLYWLHLNNCALTS-IP---QEIGYLSSLEWLHLR 272 (293)
Q Consensus 211 ~L~l~~~~~~~~~~--l~--~~l~~l~~~----------~~~~~~~L~~L~l~~n~i~~-l~---~~~~~~~~L~~L~l~ 272 (293)
+|+++.|.+..++. +. ..++.|.++ .|.++.+|+.|||++|.+.. +. ..+.++++|++|++.
T Consensus 321 ~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~ 400 (873)
T KOG4194|consen 321 ELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLT 400 (873)
T ss_pred eEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeec
Confidence 77777777776632 21 333333332 26677777777777776554 22 235567777777777
Q ss_pred CCcCCCCc-hhHhhcccCCCCC
Q 039599 273 GNNLEGLP-ASIKQISRLESLD 293 (293)
Q Consensus 273 ~n~l~~~p-~~l~~l~~L~~ld 293 (293)
+|+++.+| ..+.+++.|+.||
T Consensus 401 gNqlk~I~krAfsgl~~LE~Ld 422 (873)
T KOG4194|consen 401 GNQLKSIPKRAFSGLEALEHLD 422 (873)
T ss_pred CceeeecchhhhccCcccceec
Confidence 77777766 3455677776664
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=2.5e-27 Score=203.74 Aligned_cols=286 Identities=21% Similarity=0.230 Sum_probs=205.9
Q ss_pred CceEEEEeecCcccceeechhhccCCccccEEEEeccceeeec------ccceEEEeccCCcccccCCCCCCCc-CceEE
Q 039599 3 DAIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM------SIEEQLLDSKGCKILRSFPSNLHFV-SPVTI 75 (293)
Q Consensus 3 ~~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~l~~L~l~~~~~~~~~~~~~~~~-~L~~L 75 (293)
++++.+ ++.+|-+..+....++.++.|+.|+++.|.+...+ ...+++|++++|.+.......|... +|.+|
T Consensus 125 ghl~~L--~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 125 GHLEKL--DLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred cceeEE--eeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence 344444 66666666666666666666666666666554211 1236677777766655444444433 66666
Q ss_pred eecCCcCCcccCCC----CCCccEEeccccccccc-CccccCCCCCCEEEeccCccccccccccccccccceeccccccc
Q 039599 76 DFTSCINLTDFPHI----SGNITRLYLDETAIEEV-PSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLN 150 (293)
Q Consensus 76 ~l~~~~~~~~~~~~----~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 150 (293)
.++.|+ ++.+|.. +++|+.|+|..|.|..+ --.|.++++|+.|.+..|.+..-..+.+..+.++++|++..|++
T Consensus 203 kLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 203 KLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred ecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence 777666 4444422 33566667777766544 23566777777777777666555556677788899999999988
Q ss_pred CCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--cccc-ccccCccccceecccCCCccCCCC--c
Q 039599 151 LERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLS-DNIGNFKSFEYMGAHGSAISQLPS--L 225 (293)
Q Consensus 151 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~-~~~~~l~~L~~L~l~~~~~~~~~~--l 225 (293)
...-..++..+++|+.|++++|.+..+.++.++.+++|++|+++.| .+++ ..+..+..|++|.+++|.+..+.. +
T Consensus 282 ~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af 361 (873)
T KOG4194|consen 282 QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF 361 (873)
T ss_pred hhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH
Confidence 8777778889999999999999998888889999999999999998 4443 356678889999999999888743 1
Q ss_pred --CCCCccCccc-------------ccCCccccceeecCCccCCcCCc-ccCCCCCCcEEeccCCcCCC-CchhHhhccc
Q 039599 226 --SSGLVPLSAS-------------LLSGLSLLYWLHLNNCALTSIPQ-EIGYLSSLEWLHLRGNNLEG-LPASIKQISR 288 (293)
Q Consensus 226 --~~~l~~l~~~-------------~~~~~~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~l~~-~p~~l~~l~~ 288 (293)
.++++.|+++ .|.++++|+.|++.||++..+|. ++.++++|+.|||.+|.+.+ -|..|..+ +
T Consensus 362 ~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~ 440 (873)
T KOG4194|consen 362 VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-E 440 (873)
T ss_pred HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-h
Confidence 1667777764 28899999999999999999885 78999999999999999987 56666665 5
Q ss_pred CCCC
Q 039599 289 LESL 292 (293)
Q Consensus 289 L~~l 292 (293)
|+.|
T Consensus 441 Lk~L 444 (873)
T KOG4194|consen 441 LKEL 444 (873)
T ss_pred hhhh
Confidence 5543
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=2.5e-27 Score=205.60 Aligned_cols=268 Identities=21% Similarity=0.327 Sum_probs=169.8
Q ss_pred ecCcccceeechhhccCCccccEEEEecccee---eecccc----eEEEeccCCcccccCCCCCCCc-CceEEeecCCcC
Q 039599 11 NLSTIKGINLNLRAFSNMSNLRVLKFYIPEIS---VHMSIE----EQLLDSKGCKILRSFPSNLHFV-SPVTIDFTSCIN 82 (293)
Q Consensus 11 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~----l~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~ 82 (293)
.+++|+...+. +.++.++.|+.+.+..|++. ++..+. |..|++++|+ ++..|..+... ++-+|++++|.
T Consensus 61 s~~HN~L~~vh-GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~- 137 (1255)
T KOG0444|consen 61 SMAHNQLISVH-GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN- 137 (1255)
T ss_pred hhhhhhhHhhh-hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-
Confidence 55666555554 36667777777777766654 222222 7778888876 45567666555 77788888887
Q ss_pred CcccCCCCC----CccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccC-CCCChh
Q 039599 83 LTDFPHISG----NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNL-ERFPES 157 (293)
Q Consensus 83 ~~~~~~~~~----~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~ 157 (293)
+..+|..+. .|-+|||++|.++.+|+.+.++..|++|.+++|.+....-.-+..++.|+.|++++.+.+ ..+|..
T Consensus 138 IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts 217 (1255)
T KOG0444|consen 138 IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS 217 (1255)
T ss_pred cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc
Confidence 666665432 455668888888888887777777777777776543222222333444444444444332 234444
Q ss_pred hhccccCCceecCCCcccccCCCccccc-----------------------ccCceecCCCC--ccccccccCcccccee
Q 039599 158 LEKMEHLNQINLGRTTITEQRPSSFENV-----------------------KGLETLGFSEL--DNLSDNIGNFKSFEYM 212 (293)
Q Consensus 158 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~-----------------------~~L~~L~l~~~--~~l~~~~~~l~~L~~L 212 (293)
+..+.+|..++++.|.+. .+|+.+.++ .+|++|+++.| ..+|+.+.+++.|+.|
T Consensus 218 ld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kL 296 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKL 296 (1255)
T ss_pred hhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHH
Confidence 444444444444444442 344444444 44555555544 4445555555555555
Q ss_pred cccCCCc--cCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCchhHhhcccCC
Q 039599 213 GAHGSAI--SQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLE 290 (293)
Q Consensus 213 ~l~~~~~--~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~ 290 (293)
.+++|++ .++|. .++.+.+|+.+..++|.+.-+|..++.|+.|+.|.|++|++.++|+.+.-++.|+
T Consensus 297 y~n~NkL~FeGiPS-----------GIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 297 YANNNKLTFEGIPS-----------GIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLK 365 (1255)
T ss_pred HhccCcccccCCcc-----------chhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcc
Confidence 5555543 22333 3677888999999999888899999999999999999999999999998888888
Q ss_pred CCC
Q 039599 291 SLD 293 (293)
Q Consensus 291 ~ld 293 (293)
+||
T Consensus 366 vLD 368 (1255)
T KOG0444|consen 366 VLD 368 (1255)
T ss_pred eee
Confidence 776
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=7.7e-26 Score=196.43 Aligned_cols=282 Identities=17% Similarity=0.240 Sum_probs=176.9
Q ss_pred eEEEEeecCcccce-eechhhccCCccccEEEEecccee-eecccc----eEEEeccCCcccccCCCCCCCcCceEEeec
Q 039599 5 IESIFLNLSTIKGI-NLNLRAFSNMSNLRVLKFYIPEIS-VHMSIE----EQLLDSKGCKILRSFPSNLHFVSPVTIDFT 78 (293)
Q Consensus 5 ~~~i~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~----l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 78 (293)
|++| |+++|+-. +.-+.....|+++++|.+....+. ++..++ |++|.+++|......-+.-..+.|+.++++
T Consensus 9 VrGv--DfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 9 VRGV--DFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred eecc--cccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh
Confidence 5677 99988554 222347788899999999876654 222332 788888888765544444445577777777
Q ss_pred CCcCC-cccCCCCC---CccEEecccccccccCccccCCCCCCEEEeccCccccccc-cccccccccceecccccccCCC
Q 039599 79 SCINL-TDFPHISG---NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVS-TSICKLKSLIALSAYGCLNLER 153 (293)
Q Consensus 79 ~~~~~-~~~~~~~~---~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~ 153 (293)
+|..- ..+|..+. .|+.|||++|++.++|..+....++-+|++++|++.. +| ..+.++..|-.|++++| ....
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~N-rLe~ 164 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNN-RLEM 164 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc-CCchHHHhhHhHhhhccccc-hhhh
Confidence 77632 24565544 4566688888888888877777777888888876544 44 33456777777888877 4456
Q ss_pred CChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC----ccccccccCccccceecccCCCccCCCC-cC--
Q 039599 154 FPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL----DNLSDNIGNFKSFEYMGAHGSAISQLPS-LS-- 226 (293)
Q Consensus 154 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~----~~l~~~~~~l~~L~~L~l~~~~~~~~~~-l~-- 226 (293)
+|+.+..+..|++|.+++|.+...-...+-.+++|++|.++++ ..+|..+..+.+|..++++.|.+..+|. +.
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l 244 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKL 244 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhh
Confidence 6777777888888888887764332233344556666666665 3455556666666666666666666555 11
Q ss_pred CCCccCcccc---------cCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCC--CCchhHhhcccCC
Q 039599 227 SGLVPLSASL---------LSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLE--GLPASIKQISRLE 290 (293)
Q Consensus 227 ~~l~~l~~~~---------~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~--~~p~~l~~l~~L~ 290 (293)
.+++.|+++. .+.+.+|++|+++.|+++.+|++++.+++|+.|.+.+|+++ ++|..++.+..|+
T Consensus 245 ~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred hhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 2222222221 23445566666666666666666666666666666666544 4666666655554
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.8e-22 Score=195.88 Aligned_cols=288 Identities=25% Similarity=0.380 Sum_probs=196.7
Q ss_pred CCCceEEEEeecCcccceeechhhccCCccccEEEEecccee--------eecc-----cceEEEeccCCcccccCCCCC
Q 039599 1 RTDAIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEIS--------VHMS-----IEEQLLDSKGCKILRSFPSNL 67 (293)
Q Consensus 1 ~~~~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--------~~~~-----~~l~~L~l~~~~~~~~~~~~~ 67 (293)
+|..|++|++|++......+...+|..|++|+.|.+..+... .+.. -.++.|.+.+++ ...+|..+
T Consensus 530 g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f 608 (1153)
T PLN03210 530 GTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNF 608 (1153)
T ss_pred ccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcC
Confidence 367899999999999888999999999999999999765321 1111 128888888876 46677777
Q ss_pred CCcCceEEeecCCcCCcccCCC---CCCccEEeccccc-ccccCccccCCCCCCEEEeccCcccccccccccccccccee
Q 039599 68 HFVSPVTIDFTSCINLTDFPHI---SGNITRLYLDETA-IEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIAL 143 (293)
Q Consensus 68 ~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~-~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 143 (293)
...+|+.|++.+|. +..++.+ +.+|+.|+++++. +..+|. ++.+++|++|++++|.....+|..+..+++|+.|
T Consensus 609 ~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 609 RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 66688888888776 4444432 3467777777654 455553 6667777777777776666677777777777777
Q ss_pred cccccccCCCCChhhhccccCCceecCCCcccc--------------------cCCCcc---------------------
Q 039599 144 SAYGCLNLERFPESLEKMEHLNQINLGRTTITE--------------------QRPSSF--------------------- 182 (293)
Q Consensus 144 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--------------------~~~~~~--------------------- 182 (293)
++++|...+.+|..+ .+++|+.|++++|.... .+|..+
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcccc
Confidence 777776666665543 45555555555543211 222211
Q ss_pred ---------cccccCceecCCCC---ccccccccCccccceecccCCC-ccCCCC-c-CCCCccCcccc---c----CCc
Q 039599 183 ---------ENVKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHGSA-ISQLPS-L-SSGLVPLSASL---L----SGL 240 (293)
Q Consensus 183 ---------~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~~~-~~~~~~-l-~~~l~~l~~~~---~----~~~ 240 (293)
...++|+.|++++| ..+|..++++++|+.|++++|. +..+|. + .+.|+.|+++. + ...
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~ 845 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIS 845 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccc
Confidence 01235677777766 4577778888899999998874 555555 2 24566665542 1 123
Q ss_pred cccceeecCCccCCcCCcccCCCCCCcEEeccCC-cCCCCchhHhhcccCCCC
Q 039599 241 SLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGN-NLEGLPASIKQISRLESL 292 (293)
Q Consensus 241 ~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n-~l~~~p~~l~~l~~L~~l 292 (293)
.+|++|++++|.|+.+|.++..+++|+.|++++| +++.+|..+..+++|+.+
T Consensus 846 ~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L 898 (1153)
T PLN03210 846 TNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETV 898 (1153)
T ss_pred cccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCee
Confidence 5788999999999999999999999999999985 677787777666666554
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=7.1e-20 Score=179.14 Aligned_cols=214 Identities=27% Similarity=0.383 Sum_probs=135.5
Q ss_pred eEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCCCCCccEEecccccccccCccccCCCCCCEEEeccCcccc
Q 039599 49 EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLK 128 (293)
Q Consensus 49 l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~ 128 (293)
|+.|++++|..+..+|..+.+.+|+.|++++|..+..+|....+|++|++++|.+..+|..+ .+++|++|.+.++....
T Consensus 683 L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 683 LEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEK 761 (1153)
T ss_pred CCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhh
Confidence 45555555544444554444445555555555545555544445555666655555555433 34555555554432110
Q ss_pred -------ccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCCccccc
Q 039599 129 -------RVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSD 201 (293)
Q Consensus 129 -------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 201 (293)
..+......++|+.|++++|.....+|..++.+++|+.|++++|...+.+|..+ .+++|+.|++++|..+..
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT 840 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc
Confidence 001111224577888888877777778788888888888888775445666554 677888888888733222
Q ss_pred cccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCc-cCCcCCcccCCCCCCcEEeccCCc
Q 039599 202 NIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNC-ALTSIPQEIGYLSSLEWLHLRGNN 275 (293)
Q Consensus 202 ~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n-~i~~l~~~~~~~~~L~~L~l~~n~ 275 (293)
......+++.|++++|.+..+|. .+..+++|+.|++++| .++.+|..+..+++|+.+++++|.
T Consensus 841 ~p~~~~nL~~L~Ls~n~i~~iP~-----------si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 841 FPDISTNISDLNLSRTGIEEVPW-----------WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccccccccCEeECCCCCCccChH-----------HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 22234577888888888877765 3567889999999987 677788888889999999999983
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=3.4e-23 Score=171.29 Aligned_cols=239 Identities=24% Similarity=0.316 Sum_probs=175.6
Q ss_pred eEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCCCC---CccEEecccccccccCccccCCCCCCEEEeccCc
Q 039599 49 EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISG---NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCT 125 (293)
Q Consensus 49 l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~ 125 (293)
+..+.+++|......++.....-+.++++.+|. ..+.|+.+. .++.+++++|++.++|+.++.+.++..++.+.|.
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~-l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNK-LSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE 125 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccch-hhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc
Confidence 666667766654444444444577788888887 556665554 5666688888888888888888888888888776
Q ss_pred cccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccc
Q 039599 126 RLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNI 203 (293)
Q Consensus 126 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~ 203 (293)
.. ..+++++.+-.++.++..+|++. .+|+.+..+.++..+++.+|.+. ..|+....|+.|+.++...| +.+|..+
T Consensus 126 ~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~tlP~~l 202 (565)
T KOG0472|consen 126 LK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLETLPPEL 202 (565)
T ss_pred ee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhhcCChhh
Confidence 44 46666777778888887777443 56677777778888888888874 44444445788888877777 7788888
Q ss_pred cCccccceecccCCCccCCCCcC--CCCccCccc----------ccCCccccceeecCCccCCcCCcccCCCCCCcEEec
Q 039599 204 GNFKSFEYMGAHGSAISQLPSLS--SGLVPLSAS----------LLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHL 271 (293)
Q Consensus 204 ~~l~~L~~L~l~~~~~~~~~~l~--~~l~~l~~~----------~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l 271 (293)
+.+.+|+.+++.+|++..+|.+. +.++.+++. ..+.++++..||+++|+++++|+.++-+.+|++||+
T Consensus 203 g~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDl 282 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDL 282 (565)
T ss_pred cchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcc
Confidence 88888888888888887777644 334444432 255778889999999999999999999999999999
Q ss_pred cCCcCCCCchhHhhcccCCCC
Q 039599 272 RGNNLEGLPASIKQISRLESL 292 (293)
Q Consensus 272 ~~n~l~~~p~~l~~l~~L~~l 292 (293)
|+|.++++|..++.+ .|++|
T Consensus 283 SNN~is~Lp~sLgnl-hL~~L 302 (565)
T KOG0472|consen 283 SNNDISSLPYSLGNL-HLKFL 302 (565)
T ss_pred cCCccccCCcccccc-eeeeh
Confidence 999999999888887 66654
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=1.5e-19 Score=166.40 Aligned_cols=251 Identities=20% Similarity=0.213 Sum_probs=171.5
Q ss_pred eecCcccceeechhhccCCccccEEEEeccceeeeccc--ceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccC
Q 039599 10 LNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSI--EEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFP 87 (293)
Q Consensus 10 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 87 (293)
+|++.+....++. .+. ++|+.|++.+|.+...+.. .|++|++++|.+. .+|.. ..+|+.|++++|. +..+|
T Consensus 206 LdLs~~~LtsLP~-~l~--~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N~-L~~Lp 278 (788)
T PRK15387 206 LNVGESGLTTLPD-CLP--AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSNP-LTHLP 278 (788)
T ss_pred EEcCCCCCCcCCc-chh--cCCCEEEccCCcCCCCCCCCCCCcEEEecCCccC-cccCc--ccccceeeccCCc-hhhhh
Confidence 4888887776665 443 3789999999888754433 3999999998754 45643 2488899998887 66777
Q ss_pred CCCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCce
Q 039599 88 HISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQI 167 (293)
Q Consensus 88 ~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 167 (293)
..+.+|+.|++++|++..+|.. .++|++|++++|.+.. +|.. ...|+.|++++|.+. .+|.. ..+|++|
T Consensus 279 ~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~L 347 (788)
T PRK15387 279 ALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL---PSGLQEL 347 (788)
T ss_pred hchhhcCEEECcCCcccccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc---ccccceE
Confidence 7777888899999988888763 4678899998887654 3432 234667777777554 34431 2367788
Q ss_pred ecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccc--cC----C
Q 039599 168 NLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASL--LS----G 239 (293)
Q Consensus 168 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~--~~----~ 239 (293)
++++|.+++ +|.. ..+|+.|++++| ..+|.. ..+|+.|++++|.+..+|.....++.|+++. +. .
T Consensus 348 dLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP~l 420 (788)
T PRK15387 348 SVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPML 420 (788)
T ss_pred ecCCCccCC-CCCC---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCcccCCCEEEccCCcCCCCCcc
Confidence 888887753 4432 245666666666 334432 2356677777777766655444555555432 11 1
Q ss_pred ccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCC-CchhHhh
Q 039599 240 LSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEG-LPASIKQ 285 (293)
Q Consensus 240 ~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~-~p~~l~~ 285 (293)
+.+|+.|++++|.|+.+|..+..+++|+.|++++|++++ .|..+..
T Consensus 421 ~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 421 PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 246788999999999999989999999999999999997 5555543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=9.1e-23 Score=168.74 Aligned_cols=101 Identities=23% Similarity=0.353 Sum_probs=78.2
Q ss_pred cCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcC-------------CCCccCcccccCCcc
Q 039599 177 QRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLS-------------SGLVPLSASLLSGLS 241 (293)
Q Consensus 177 ~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~-------------~~l~~l~~~~~~~~~ 241 (293)
.+|..++.+++|..|+++.| ..+|..++.+-.|+.++++.|++...|... ..+...+.+.+.++.
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~ 505 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMR 505 (565)
T ss_pred cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhh
Confidence 34445566778888888888 778888888888888888888887776522 234444444477888
Q ss_pred ccceeecCCccCCcCCcccCCCCCCcEEeccCCcCC
Q 039599 242 LLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLE 277 (293)
Q Consensus 242 ~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~ 277 (293)
+|..||+.+|.+..+|..+++|.+|+.|++++|+|+
T Consensus 506 nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 506 NLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 888999999888888888899999999999999888
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=5.4e-18 Score=156.28 Aligned_cols=239 Identities=22% Similarity=0.186 Sum_probs=177.6
Q ss_pred cccEEEEeccceeeec-cc--ceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCCCCCccEEeccccccccc
Q 039599 30 NLRVLKFYIPEISVHM-SI--EEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEV 106 (293)
Q Consensus 30 ~L~~L~l~~~~~~~~~-~~--~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~l 106 (293)
+-..|+++++.+...+ .+ .++.|++.+|.+. .+|.. .++|++|++++|. ++.+|..+.+|++|++++|.+..+
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt-~LP~l--p~~Lk~LdLs~N~-LtsLP~lp~sL~~L~Ls~N~L~~L 277 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLT-SLPAL--PPELRTLEVSGNQ-LTSLPVLPPGLLELSIFSNPLTHL 277 (788)
T ss_pred CCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCC-CCCCC--CCCCcEEEecCCc-cCcccCcccccceeeccCCchhhh
Confidence 4567888888776333 22 3888999988754 45643 3589999999987 667887778999999999998887
Q ss_pred CccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccc
Q 039599 107 PSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVK 186 (293)
Q Consensus 107 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 186 (293)
|... .+|+.|++++|.+.. +|. ..++|+.|++++|.+.+ +|.. ..+|+.|++++|.+++ +|.. ..
T Consensus 278 p~lp---~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~ 342 (788)
T PRK15387 278 PALP---SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PS 342 (788)
T ss_pred hhch---hhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---cc
Confidence 7633 568889999987653 453 34689999999996654 4432 2357889999999853 5542 25
Q ss_pred cCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccc--cC----CccccceeecCCccCCcCCc
Q 039599 187 GLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASL--LS----GLSLLYWLHLNNCALTSIPQ 258 (293)
Q Consensus 187 ~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~--~~----~~~~L~~L~l~~n~i~~l~~ 258 (293)
+|+.|++++| ..+|.. ..+|+.|++++|.+..+|.+..+|+.|+++. +. ..++|+.|++++|.++.+|.
T Consensus 343 ~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP~ 419 (788)
T PRK15387 343 GLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPM 419 (788)
T ss_pred ccceEecCCCccCCCCCC---CcccceehhhccccccCcccccccceEEecCCcccCCCCcccCCCEEEccCCcCCCCCc
Confidence 7999999998 555543 3468889999999998887666777777643 22 22478899999999988885
Q ss_pred ccCCCCCCcEEeccCCcCCCCchhHhhcccCCCCC
Q 039599 259 EIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293 (293)
Q Consensus 259 ~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~ld 293 (293)
. ..+|+.|++++|+++.+|..+..+++|+.+|
T Consensus 420 l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 420 L---PSGLLSLSVYRNQLTRLPESLIHLSSETTVN 451 (788)
T ss_pred c---hhhhhhhhhccCcccccChHHhhccCCCeEE
Confidence 3 3578889999999999999999888887654
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=3.2e-18 Score=158.40 Aligned_cols=237 Identities=16% Similarity=0.232 Sum_probs=139.5
Q ss_pred eecCcccceeechhhccCCccccEEEEeccceeeecc-c--ceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCccc
Q 039599 10 LNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMS-I--EEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDF 86 (293)
Q Consensus 10 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~--~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 86 (293)
++++++....++. .+. ++++.|++++|.+...+. + .|+.|++++|.+. .+|..+. .+|+.|++++|. +..+
T Consensus 183 L~L~~~~LtsLP~-~Ip--~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~-~~L~~L~Ls~N~-L~~L 256 (754)
T PRK15370 183 LRLKILGLTTIPA-CIP--EQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP-DTIQEMELSINR-ITEL 256 (754)
T ss_pred EEeCCCCcCcCCc-ccc--cCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh-ccccEEECcCCc-cCcC
Confidence 3555554444442 221 357777777776653221 1 2677777776543 4454321 267777777776 4455
Q ss_pred CCCCC-CccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCC
Q 039599 87 PHISG-NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLN 165 (293)
Q Consensus 87 ~~~~~-~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 165 (293)
|..+. +|+.|++++|++..+|..+. ++|++|++++|.+.. +|..+. .+|+.|++++|.+.. +|..+ .++|+
T Consensus 257 P~~l~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~ 328 (754)
T PRK15370 257 PERLPSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLK 328 (754)
T ss_pred ChhHhCCCCEEECcCCccCccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc--cccce
Confidence 54433 57777777777776665443 467777777765443 443322 356677777765543 33322 24677
Q ss_pred ceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCcccc
Q 039599 166 QINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLL 243 (293)
Q Consensus 166 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L 243 (293)
.|++++|.+++ +|..+ .++|+.|++++| ..+|..+ .+.|+.|++++|.+..+|.- + ...|
T Consensus 329 ~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~-----------l--~~sL 390 (754)
T PRK15370 329 TLEAGENALTS-LPASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPEN-----------L--PAAL 390 (754)
T ss_pred eccccCCcccc-CChhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHh-----------H--HHHH
Confidence 77777777643 44433 256777777776 3444433 24677777777777766540 1 1357
Q ss_pred ceeecCCccCCcCCccc----CCCCCCcEEeccCCcCCC
Q 039599 244 YWLHLNNCALTSIPQEI----GYLSSLEWLHLRGNNLEG 278 (293)
Q Consensus 244 ~~L~l~~n~i~~l~~~~----~~~~~L~~L~l~~n~l~~ 278 (293)
+.|++++|+++.+|..+ ...+.+..+++.+|+++.
T Consensus 391 ~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 391 QIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 77888888887766543 345777888888888773
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.73 E-value=4.3e-19 Score=160.47 Aligned_cols=210 Identities=19% Similarity=0.282 Sum_probs=151.3
Q ss_pred eEEEeccCCcccccCCCCCC-CcCceEEeecCCcCCcccCCCC---CCccEEecccccccccCccccCCCCCCEEEeccC
Q 039599 49 EQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINLTDFPHIS---GNITRLYLDETAIEEVPSSIKCLTNLKLLRINRC 124 (293)
Q Consensus 49 l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~ 124 (293)
+++++++.+.+ ..+|++++ +.+|+.++..+|.+ ..+|..+ .+|++|....|.+..+|+...++.+|++|++..|
T Consensus 243 l~~~dis~n~l-~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 243 LQYLDISHNNL-SNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred ceeeecchhhh-hcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence 77777777763 34566654 44888888887773 5555332 3566667777777777776677777888887776
Q ss_pred cccccccccc--------------------------ccccccceecccccccCCCCChhhhccccCCceecCCCcccccC
Q 039599 125 TRLKRVSTSI--------------------------CKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQR 178 (293)
Q Consensus 125 ~~~~~~~~~l--------------------------~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 178 (293)
++.. +|+.+ ..++.|+.|.+.+|.+....-+.+..+++|+.|.+++|.+. .+
T Consensus 321 ~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~f 398 (1081)
T KOG0618|consen 321 NLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SF 398 (1081)
T ss_pred cccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cC
Confidence 5432 22210 12345677777787777776677788888888888888884 45
Q ss_pred CC-cccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCc
Q 039599 179 PS-SFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS 255 (293)
Q Consensus 179 ~~-~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~ 255 (293)
|+ .+.++..|+.|+++|| ..+|..+..++.|++|...+|.+..+|. +..++.|+.+|++.|+++.
T Consensus 399 pas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe------------~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPE------------LAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechh------------hhhcCcceEEecccchhhh
Confidence 54 4677888888888888 7888888888888888888888888887 5688889999999999887
Q ss_pred --CCcccCCCCCCcEEeccCCc
Q 039599 256 --IPQEIGYLSSLEWLHLRGNN 275 (293)
Q Consensus 256 --l~~~~~~~~~L~~L~l~~n~ 275 (293)
+|.... .++|++||+++|.
T Consensus 467 ~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 467 VTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhCC-CcccceeeccCCc
Confidence 443332 3899999999996
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=4e-17 Score=151.17 Aligned_cols=225 Identities=23% Similarity=0.311 Sum_probs=170.5
Q ss_pred cccEEEEeccceeeec-cc--ceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCCC-CCccEEecccccccc
Q 039599 30 NLRVLKFYIPEISVHM-SI--EEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHIS-GNITRLYLDETAIEE 105 (293)
Q Consensus 30 ~L~~L~l~~~~~~~~~-~~--~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~~~~ 105 (293)
+...|+++++.+...+ .+ .++.|++++|.+. .+|..+. .+|++|++++|. ++.+|..+ ..|+.|++++|.+..
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lt-sLP~~l~-~nL~~L~Ls~N~-LtsLP~~l~~~L~~L~Ls~N~L~~ 255 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIPEQITTLILDNNELK-SLPENLQ-GNIKTLYANSNQ-LTSIPATLPDTIQEMELSINRITE 255 (754)
T ss_pred CceEEEeCCCCcCcCCcccccCCcEEEecCCCCC-cCChhhc-cCCCEEECCCCc-cccCChhhhccccEEECcCCccCc
Confidence 4677888887766333 23 3899999998754 5676543 589999999998 56777654 479999999999999
Q ss_pred cCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCccccc
Q 039599 106 VPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENV 185 (293)
Q Consensus 106 l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 185 (293)
+|..+. .+|++|++++|.+. .+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.++. +|..+ .
T Consensus 256 LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~ 324 (754)
T PRK15370 256 LPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETL--P 324 (754)
T ss_pred CChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCccc--c
Confidence 987664 58999999988765 4666543 58999999999665 4554332 468999999999864 55433 3
Q ss_pred ccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCC
Q 039599 186 KGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYL 263 (293)
Q Consensus 186 ~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~ 263 (293)
++|+.|++++| ..+|..+. ++|+.|++++|.+..+|.. + .++|+.|++++|.++.+|..+.
T Consensus 325 ~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~-----------l--p~~L~~LdLs~N~Lt~LP~~l~-- 387 (754)
T PRK15370 325 PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPET-----------L--PPTITTLDVSRNALTNLPENLP-- 387 (754)
T ss_pred ccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChh-----------h--cCCcCEEECCCCcCCCCCHhHH--
Confidence 68999999988 55665543 6899999999998877651 1 2578999999999999887653
Q ss_pred CCCcEEeccCCcCCCCchhHhh
Q 039599 264 SSLEWLHLRGNNLEGLPASIKQ 285 (293)
Q Consensus 264 ~~L~~L~l~~n~l~~~p~~l~~ 285 (293)
+.|+.|++++|+++++|..+..
T Consensus 388 ~sL~~LdLs~N~L~~LP~sl~~ 409 (754)
T PRK15370 388 AALQIMQASRNNLVRLPESLPH 409 (754)
T ss_pred HHHHHHhhccCCcccCchhHHH
Confidence 4799999999999988876544
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=3.3e-18 Score=154.83 Aligned_cols=252 Identities=22% Similarity=0.275 Sum_probs=159.9
Q ss_pred ccCCccccEEEEeccceeee--cccceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCC---CCCccEEecc
Q 039599 25 FSNMSNLRVLKFYIPEISVH--MSIEEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHI---SGNITRLYLD 99 (293)
Q Consensus 25 ~~~~~~L~~L~l~~~~~~~~--~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~ 99 (293)
+.++.+|+.+....|.+... ....++.|+...|+.... -..+.-.+|++++++++. ...+|.+ ..+++.++..
T Consensus 195 ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~-~~~p~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n 272 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTL-DVHPVPLNLQYLDISHNN-LSNLPEWIGACANLEALNAN 272 (1081)
T ss_pred hhhccchhhhhhhhcccceEEecCcchheeeeccCcceee-ccccccccceeeecchhh-hhcchHHHHhcccceEeccc
Confidence 44444444444444433311 112255666666654411 111111266677776666 4445533 2356666666
Q ss_pred cccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhh---------------------
Q 039599 100 ETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESL--------------------- 158 (293)
Q Consensus 100 ~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--------------------- 158 (293)
.|.+..+|..+....+|++|.+..|.. ..+|+....++.|++|++..|.+.. +|+.+
T Consensus 273 ~N~l~~lp~ri~~~~~L~~l~~~~nel-~yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~l 350 (1081)
T KOG0618|consen 273 HNRLVALPLRISRITSLVSLSAAYNEL-EYIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTL 350 (1081)
T ss_pred chhHHhhHHHHhhhhhHHHHHhhhhhh-hhCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhcccccc
Confidence 666766666666666777776666553 3355556667777788877775532 11110
Q ss_pred -----hccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccc-cccCccccceecccCCCccCCCCcCCCCc
Q 039599 159 -----EKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSD-NIGNFKSFEYMGAHGSAISQLPSLSSGLV 230 (293)
Q Consensus 159 -----~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~-~~~~l~~L~~L~l~~~~~~~~~~l~~~l~ 230 (293)
..++.|+.|++.+|.+++..-+.+...++|+.|+++.| +.+|+ .+.++..|++|+++||++..+|.
T Consensus 351 p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~------ 424 (1081)
T KOG0618|consen 351 PSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPD------ 424 (1081)
T ss_pred ccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhH------
Confidence 12345677777777777766667777788888888888 66665 45677888888888888887765
Q ss_pred cCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCC--CchhHhhcccCCCCC
Q 039599 231 PLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEG--LPASIKQISRLESLD 293 (293)
Q Consensus 231 ~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~--~p~~l~~l~~L~~ld 293 (293)
.+..++.|++|..-+|++..+| .+..++.|+.+|++.|+++. +|.... -++|++||
T Consensus 425 -----tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLd 482 (1081)
T KOG0618|consen 425 -----TVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLD 482 (1081)
T ss_pred -----HHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCC-Ccccceee
Confidence 3557788899998888888888 68889999999999999985 443332 27788776
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=3.2e-18 Score=126.63 Aligned_cols=157 Identities=25% Similarity=0.399 Sum_probs=89.9
Q ss_pred CccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCC
Q 039599 92 NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR 171 (293)
Q Consensus 92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 171 (293)
+++.|.+++|+++.+|+.++.+.+|+.|++.+|++ ..+|..++++++|+.|+++-|. ...+|..|+.++.|+.||+.+
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhccc
Confidence 56666777777777777777777777777776653 3456666666666666666553 235566666666666666666
Q ss_pred Ccccc-cCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeec
Q 039599 172 TTITE-QRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHL 248 (293)
Q Consensus 172 n~~~~-~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l 248 (293)
|.+.+ .+|..|.-++.|+.|.+++| +.+|..++++++|+.+.+..|.+.++|. -++.+..|++|++
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpk-----------eig~lt~lrelhi 180 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPK-----------EIGDLTRLRELHI 180 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcH-----------HHHHHHHHHHHhc
Confidence 65543 33444545555555555555 4455555555555555555555444443 1334444555555
Q ss_pred CCccCCcCCcccC
Q 039599 249 NNCALTSIPQEIG 261 (293)
Q Consensus 249 ~~n~i~~l~~~~~ 261 (293)
.+|+++.+|..++
T Consensus 181 qgnrl~vlppel~ 193 (264)
T KOG0617|consen 181 QGNRLTVLPPELA 193 (264)
T ss_pred ccceeeecChhhh
Confidence 5555555544443
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=9.1e-18 Score=124.25 Aligned_cols=160 Identities=22% Similarity=0.343 Sum_probs=140.2
Q ss_pred cCCCCCCCcCceEEeecCCcCCcccCCCCC---CccEEecccccccccCccccCCCCCCEEEeccCcccccccccccccc
Q 039599 62 SFPSNLHFVSPVTIDFTSCINLTDFPHISG---NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLK 138 (293)
Q Consensus 62 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 138 (293)
.+|..+.+.+++.|.+++|+ ++.+|+.+. +|+.|++.+|+++++|..++.+++|+.|++..|. ....|..++.++
T Consensus 25 ~~~gLf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p 102 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFP 102 (264)
T ss_pred hcccccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCc
Confidence 34556666688899999999 777777665 6777799999999999999999999999999875 456899999999
Q ss_pred ccceecccccccCC-CCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceeccc
Q 039599 139 SLIALSAYGCLNLE-RFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAH 215 (293)
Q Consensus 139 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~ 215 (293)
.|+.|++.+|.+.+ .+|..|-.++.|+.|+++.|.+ +.+|..++++++||.|.+.+| -.+|..++.+..|+++++.
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcc
Confidence 99999999987774 6788888899999999999999 789999999999999999998 6789999999999999999
Q ss_pred CCCccCCCC
Q 039599 216 GSAISQLPS 224 (293)
Q Consensus 216 ~~~~~~~~~ 224 (293)
+|+++-+|.
T Consensus 182 gnrl~vlpp 190 (264)
T KOG0617|consen 182 GNRLTVLPP 190 (264)
T ss_pred cceeeecCh
Confidence 999998843
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.63 E-value=1.3e-17 Score=142.42 Aligned_cols=235 Identities=19% Similarity=0.210 Sum_probs=133.7
Q ss_pred hhccCCccccEEEEeccceeeecccceEEEeccCCcccccCCCCC-CCcCceEEeecCCcCCc------ccCCC---CCC
Q 039599 23 RAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNL-HFVSPVTIDFTSCINLT------DFPHI---SGN 92 (293)
Q Consensus 23 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~------~~~~~---~~~ 92 (293)
..|..+.+|++++++++.+.... ...++..+ ..++++.++++++.... .++.. ..+
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~--------------~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEA--------------AKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHH--------------HHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 35566677888888877653210 00111111 12245555555554321 01111 236
Q ss_pred ccEEeccccccc-ccCccccCCC---CCCEEEeccCccccc----cccccccc-cccceecccccccCC----CCChhhh
Q 039599 93 ITRLYLDETAIE-EVPSSIKCLT---NLKLLRINRCTRLKR----VSTSICKL-KSLIALSAYGCLNLE----RFPESLE 159 (293)
Q Consensus 93 L~~L~l~~~~~~-~l~~~~~~l~---~L~~L~l~~~~~~~~----~~~~l~~l-~~L~~L~l~~~~~~~----~~~~~~~ 159 (293)
|++|++++|.+. ..+..+..+. +|++|++++|..... +...+..+ ++|++|++++|.+.+ .++..+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 666666666664 2222333333 377777777665421 12234445 677777777776653 2333455
Q ss_pred ccccCCceecCCCccccc----CCCcccccccCceecCCCC-------ccccccccCccccceecccCCCccCC-C-CcC
Q 039599 160 KMEHLNQINLGRTTITEQ----RPSSFENVKGLETLGFSEL-------DNLSDNIGNFKSFEYMGAHGSAISQL-P-SLS 226 (293)
Q Consensus 160 ~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~~-------~~l~~~~~~l~~L~~L~l~~~~~~~~-~-~l~ 226 (293)
.+++|++|++++|.+.+. ++..+...++|+.|++++| ..+...+..+++|++|++++|.+.+. . .+.
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 242 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA 242 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence 666777788777777532 1222334457778887776 12344566778888888888877653 1 111
Q ss_pred CCCccCcccccCCccccceeecCCccCCc-----CCcccCCCCCCcEEeccCCcCCC
Q 039599 227 SGLVPLSASLLSGLSLLYWLHLNNCALTS-----IPQEIGYLSSLEWLHLRGNNLEG 278 (293)
Q Consensus 227 ~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-----l~~~~~~~~~L~~L~l~~n~l~~ 278 (293)
.. .....+.|++|++++|.+++ +...+..+++|+.+++++|++++
T Consensus 243 ~~-------~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 243 SA-------LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HH-------HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 00 01124678899999988873 34455667889999999998884
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.58 E-value=1.3e-16 Score=132.31 Aligned_cols=136 Identities=18% Similarity=0.312 Sum_probs=99.2
Q ss_pred CcccCCCCC-CccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCC-hhhh
Q 039599 83 LTDFPHISG-NITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFP-ESLE 159 (293)
Q Consensus 83 ~~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~ 159 (293)
++++|..++ ...+++|..|+|..+|+ +|+.+++|+.|+++.|++....|..+..++++..|-+.++..+..+| ..|.
T Consensus 58 L~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 58 LTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred cccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 566776654 67788888888888887 77888888888888888887778888888888888777743444444 5677
Q ss_pred ccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccc-cccCccccceecccCCC
Q 039599 160 KMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSD-NIGNFKSFEYMGAHGSA 218 (293)
Q Consensus 160 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~-~~~~l~~L~~L~l~~~~ 218 (293)
.+..++.|.+.-|.+.....+.|..++++..|.+.+| +.++. .+..+.+++++++..|.
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 8888888888877776655566777777777777777 44444 45566666666666555
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.55 E-value=3.7e-16 Score=133.37 Aligned_cols=215 Identities=16% Similarity=0.155 Sum_probs=150.7
Q ss_pred CceEEeecCCcCCcc----cCC---CCCCccEEecccccccc-------cCccccCCCCCCEEEeccCcccccccccccc
Q 039599 71 SPVTIDFTSCINLTD----FPH---ISGNITRLYLDETAIEE-------VPSSIKCLTNLKLLRINRCTRLKRVSTSICK 136 (293)
Q Consensus 71 ~L~~L~l~~~~~~~~----~~~---~~~~L~~L~l~~~~~~~-------l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 136 (293)
+|+.+++++|.+... ++. ....+++++++++.+.. ++..+..+++|++|++++|......+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 699999999985332 222 23468999998887653 2345677889999999999876555555555
Q ss_pred ccc---cceecccccccCC----CCChhhhcc-ccCCceecCCCccccc----CCCcccccccCceecCCCC--c-----
Q 039599 137 LKS---LIALSAYGCLNLE----RFPESLEKM-EHLNQINLGRTTITEQ----RPSSFENVKGLETLGFSEL--D----- 197 (293)
Q Consensus 137 l~~---L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~~--~----- 197 (293)
+.+ |++|++++|.+.. .+...+..+ ++|++|++++|.+++. ++..+..+++|+.|++++| .
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 555 9999999997663 233445666 8999999999998742 2334556778999999998 1
Q ss_pred cccccccCccccceecccCCCccCC-CC-cCCCCccCcccccCCccccceeecCCccCCc-CCccc-----CCCCCCcEE
Q 039599 198 NLSDNIGNFKSFEYMGAHGSAISQL-PS-LSSGLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEI-----GYLSSLEWL 269 (293)
Q Consensus 198 ~l~~~~~~l~~L~~L~l~~~~~~~~-~~-l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~-----~~~~~L~~L 269 (293)
.++..+...+.|++|++++|.+.+. .. +.. .+..+++|++|++++|.+++ ....+ ...+.|+.|
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~--------~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L 255 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAE--------TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL 255 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHHHHHHH--------HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEE
Confidence 2333455667999999999988754 11 111 24567899999999999886 11112 124899999
Q ss_pred eccCCcCCC-----CchhHhhcccCCCCC
Q 039599 270 HLRGNNLEG-----LPASIKQISRLESLD 293 (293)
Q Consensus 270 ~l~~n~l~~-----~p~~l~~l~~L~~ld 293 (293)
++++|.+++ ++..+..+++|+.+|
T Consensus 256 ~l~~n~i~~~~~~~l~~~~~~~~~L~~l~ 284 (319)
T cd00116 256 SLSCNDITDDGAKDLAEVLAEKESLLELD 284 (319)
T ss_pred EccCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 999999973 344455556666553
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.51 E-value=1.8e-16 Score=131.45 Aligned_cols=242 Identities=19% Similarity=0.206 Sum_probs=130.6
Q ss_pred EEeecCcccceeechhhccCCccccEEEEeccceeeecccceEEEeccCCcccccCCCCC-CCcCceEEeecCCcCCccc
Q 039599 8 IFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNL-HFVSPVTIDFTSCINLTDF 86 (293)
Q Consensus 8 i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~ 86 (293)
+.+++..|++..+++++|+.+++||.|++++|.+. ..-|..| +...+..|-+.++..++++
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is------------------~I~p~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS------------------FIAPDAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchh------------------hcChHhhhhhHhhhHHHhhcCCchhhh
Confidence 34467777777777777777777777777776553 2334333 2334444444443335555
Q ss_pred CCCC----CCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccccCC---------
Q 039599 87 PHIS----GNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLE--------- 152 (293)
Q Consensus 87 ~~~~----~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--------- 152 (293)
|... ..++.|.+..|++..++. .+..++++..|.+.+|.+-...-..+..+..++.+++..|.+..
T Consensus 132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~ 211 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD 211 (498)
T ss_pred hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence 5432 234455666666665544 55666666666666654333222345566666666666554221
Q ss_pred ---CCChhhhccccCCceecCCCcc-------------------------cccCCC-cccccccCceecCCCC---cccc
Q 039599 153 ---RFPESLEKMEHLNQINLGRTTI-------------------------TEQRPS-SFENVKGLETLGFSEL---DNLS 200 (293)
Q Consensus 153 ---~~~~~~~~l~~L~~L~l~~n~~-------------------------~~~~~~-~~~~~~~L~~L~l~~~---~~l~ 200 (293)
..+-.++..+...-..+.+..+ ....|. .|..+++|++|++++| ..-.
T Consensus 212 ~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 212 DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence 1111112222222222222111 112221 2445556666666655 2223
Q ss_pred ccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCC
Q 039599 201 DNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLE 277 (293)
Q Consensus 201 ~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~ 277 (293)
.+|.....+++|.++.|++..+.. ..|.++..|+.|++.+|+|+. -|.+|....+|..|++-.|.+.
T Consensus 292 ~aFe~~a~l~eL~L~~N~l~~v~~----------~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 292 GAFEGAAELQELYLTRNKLEFVSS----------GMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhcchhhhhhhhcCcchHHHHHH----------HhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 345555556666666665555421 025677778888888888877 5667777788888888777665
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.39 E-value=2.2e-14 Score=124.30 Aligned_cols=198 Identities=19% Similarity=0.321 Sum_probs=162.6
Q ss_pred EeecCCcCCcccCCCCC-----CccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccc
Q 039599 75 IDFTSCINLTDFPHISG-----NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL 149 (293)
Q Consensus 75 L~l~~~~~~~~~~~~~~-----~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 149 (293)
|.|++-. ++.+|..-. .-...+++.|.+.++|..+..+..|+.+.+..|. ...+|..++++..|+.++++.|+
T Consensus 55 l~Ls~rr-lk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRR-LKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccch-hhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch
Confidence 3444433 556664432 4456699999999999998888999999998876 45678889999999999999986
Q ss_pred cCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCC
Q 039599 150 NLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSS 227 (293)
Q Consensus 150 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~ 227 (293)
+. .+|..+..++ |+.|-+++|++ ..+|..++....|..|+.+.| ..++..++.+.+|+.+.+..|.+..+|.
T Consensus 133 lS-~lp~~lC~lp-Lkvli~sNNkl-~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~--- 206 (722)
T KOG0532|consen 133 LS-HLPDGLCDLP-LKVLIVSNNKL-TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPE--- 206 (722)
T ss_pred hh-cCChhhhcCc-ceeEEEecCcc-ccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCH---
Confidence 54 6677777776 89999999999 578888888889999999999 7889999999999999999999999865
Q ss_pred CCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCchhHhhcccC
Q 039599 228 GLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRL 289 (293)
Q Consensus 228 ~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L 289 (293)
-+.. -.|..||+++|+|..+|..|..|+.|++|-|.+|.++.-|..++-.-++
T Consensus 207 --------El~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkV 259 (722)
T KOG0532|consen 207 --------ELCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKV 259 (722)
T ss_pred --------HHhC-CceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccce
Confidence 1222 2478899999999999999999999999999999999988888765444
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.25 E-value=1.5e-13 Score=112.63 Aligned_cols=135 Identities=16% Similarity=0.203 Sum_probs=97.2
Q ss_pred ccccccceecccccccCC----CCChhhhccccCCceecCCCcccccC----CCcccccccCceecCCCC-------ccc
Q 039599 135 CKLKSLIALSAYGCLNLE----RFPESLEKMEHLNQINLGRTTITEQR----PSSFENVKGLETLGFSEL-------DNL 199 (293)
Q Consensus 135 ~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~~-------~~l 199 (293)
.+-+.|++++..+|.... .+...++..+.|+.+.++.|.+.... ...+..+++|+.|++.+| ..+
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 345678888888876542 23455677788888888888773222 234678899999999888 345
Q ss_pred cccccCccccceecccCCCccCCC--CcCCCCccCcccccCCccccceeecCCccCCc-----CCcccCCCCCCcEEecc
Q 039599 200 SDNIGNFKSFEYMGAHGSAISQLP--SLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-----IPQEIGYLSSLEWLHLR 272 (293)
Q Consensus 200 ~~~~~~l~~L~~L~l~~~~~~~~~--~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-----l~~~~~~~~~L~~L~l~ 272 (293)
...+..++.|+.++++.|.+..-- .+...+ -...|+|+.+.+.+|.|+. +...+...+.|..|+|+
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al-------~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDAL-------KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLN 306 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHH-------hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCC
Confidence 567778889999999999887651 122111 1246789999999999886 33345668999999999
Q ss_pred CCcC
Q 039599 273 GNNL 276 (293)
Q Consensus 273 ~n~l 276 (293)
+|.+
T Consensus 307 gN~l 310 (382)
T KOG1909|consen 307 GNRL 310 (382)
T ss_pred cccc
Confidence 9999
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.23 E-value=3.2e-12 Score=103.13 Aligned_cols=195 Identities=21% Similarity=0.214 Sum_probs=123.7
Q ss_pred cCceEEeecCCcCCcccC---CCCCCccEEecccccccccCccccCCCCCCEEEecc-Cccccccccccccccccceecc
Q 039599 70 VSPVTIDFTSCINLTDFP---HISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINR-CTRLKRVSTSICKLKSLIALSA 145 (293)
Q Consensus 70 ~~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l 145 (293)
.+|.++.+++|. ...+. ..-+.|+.+.+.+..+...|.-+ -...+....... ....+.....+...+.|+++++
T Consensus 214 ~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~-pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDL 291 (490)
T KOG1259|consen 214 RNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTTIQDVPSLL-PETILADPSGSEPSTSNGSALVSADTWQELTELDL 291 (490)
T ss_pred hhhheeeeeccc-hhheeceeecCchhheeeeeccccccccccc-chhhhcCccCCCCCccCCceEEecchHhhhhhccc
Confidence 377777787776 33222 22345666665555443222111 001111111110 0011111223334567888888
Q ss_pred cccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCC
Q 039599 146 YGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLP 223 (293)
Q Consensus 146 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~ 223 (293)
++| .+..+.+...-.++++.|+++.|.+... ..+..+++|+.|++++| ..+..+-.++.++++|.+++|.+.++.
T Consensus 292 S~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS 368 (490)
T KOG1259|consen 292 SGN-LITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS 368 (490)
T ss_pred ccc-chhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh
Confidence 887 4456677777778888888888888533 34777888888888888 555556667888889999988887764
Q ss_pred CcCCCCccCcccccCCccccceeecCCccCCcC--CcccCCCCCCcEEeccCCcCCCCch
Q 039599 224 SLSSGLVPLSASLLSGLSLLYWLHLNNCALTSI--PQEIGYLSSLEWLHLRGNNLEGLPA 281 (293)
Q Consensus 224 ~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l--~~~~~~~~~L~~L~l~~n~l~~~p~ 281 (293)
. ++.+-+|..||+++|+|..+ -..++.+|.|+.+.+.+|.+..+|+
T Consensus 369 G------------L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 369 G------------LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred h------------hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 3 45667788899999988763 2357888999999999998887664
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=1e-12 Score=114.12 Aligned_cols=181 Identities=24% Similarity=0.376 Sum_probs=151.1
Q ss_pred EecccccccccCccc--cCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCc
Q 039599 96 LYLDETAIEEVPSSI--KCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTT 173 (293)
Q Consensus 96 L~l~~~~~~~l~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 173 (293)
|.|++..+...|..- ..+..-...+++.|.. ..+|..++.+..|+.+.++.| ....+|+.+..+..|..++++.|.
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRF-SELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhcccccc-ccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch
Confidence 455666666666422 3445556788888764 568888889999999999997 556889999999999999999999
Q ss_pred ccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCc
Q 039599 174 ITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNC 251 (293)
Q Consensus 174 ~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n 251 (293)
+ ..+|..++.++ |+.|-++.| ..+|+.++....|..++.+.|.+..+|. -++++.+|+.|.++.|
T Consensus 133 l-S~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slps-----------ql~~l~slr~l~vrRn 199 (722)
T KOG0532|consen 133 L-SHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPS-----------QLGYLTSLRDLNVRRN 199 (722)
T ss_pred h-hcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchH-----------HhhhHHHHHHHHHhhh
Confidence 9 56787787777 899988888 7889999989999999999999999955 2568889999999999
Q ss_pred cCCcCCcccCCCCCCcEEeccCCcCCCCchhHhhcccCCCC
Q 039599 252 ALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESL 292 (293)
Q Consensus 252 ~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~l 292 (293)
++.++|..+..++ |..||+|.|++..+|..|..|..|++|
T Consensus 200 ~l~~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l 239 (722)
T KOG0532|consen 200 HLEDLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVL 239 (722)
T ss_pred hhhhCCHHHhCCc-eeeeecccCceeecchhhhhhhhheee
Confidence 9999999888665 899999999999999999999999876
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=3.4e-11 Score=105.86 Aligned_cols=192 Identities=26% Similarity=0.357 Sum_probs=137.5
Q ss_pred EEeecCCcCCcccCCC--CCCccEEecccccccccCccccCCC-CCCEEEeccCccccccccccccccccceeccccccc
Q 039599 74 TIDFTSCINLTDFPHI--SGNITRLYLDETAIEEVPSSIKCLT-NLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLN 150 (293)
Q Consensus 74 ~L~l~~~~~~~~~~~~--~~~L~~L~l~~~~~~~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 150 (293)
.++...+......... ...++.|++.++.+..+++...... +|+.|++++|.+.. ++..+..+++|+.|+++.|.+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhh-hhhhhhccccccccccCCchh
Confidence 3556655532332222 2357888888888888888776664 88888888876543 444567888888888888855
Q ss_pred CCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCC
Q 039599 151 LERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSG 228 (293)
Q Consensus 151 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~ 228 (293)
. .++......+.|+.|++++|.+. .+|........|+++.++.| ...+..+.+++.+..+.+.+|++...+.
T Consensus 176 ~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~---- 249 (394)
T COG4886 176 S-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPE---- 249 (394)
T ss_pred h-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccc----
Confidence 4 44444557778888888888884 45554445566888888887 4566677788888888888887766433
Q ss_pred CccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCc
Q 039599 229 LVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLP 280 (293)
Q Consensus 229 l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p 280 (293)
.++.+++++.|++++|.+++++. ++...+++.|++++|.+..++
T Consensus 250 -------~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 250 -------SIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred -------hhccccccceecccccccccccc-ccccCccCEEeccCccccccc
Confidence 24577778999999998888776 788889999999998887643
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=3.7e-11 Score=92.07 Aligned_cols=107 Identities=23% Similarity=0.302 Sum_probs=26.5
Q ss_pred cccccceecccccccCCCCChhhh-ccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccc-cCccccce
Q 039599 136 KLKSLIALSAYGCLNLERFPESLE-KMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNI-GNFKSFEY 211 (293)
Q Consensus 136 ~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~-~~l~~L~~ 211 (293)
+..++++|++.+|.+.. + +.++ .+.+|+.|++++|.++.. +.+..+++|++|++++| ..+.+.+ ..+++|++
T Consensus 17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 44456666666664432 2 2233 355666666666666432 23445556666666555 3332222 23455555
Q ss_pred ecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCc
Q 039599 212 MGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS 255 (293)
Q Consensus 212 L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~ 255 (293)
|++++|.+..+..+. .++.+++|+.|++.+|+++.
T Consensus 93 L~L~~N~I~~l~~l~---------~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 93 LYLSNNKISDLNELE---------PLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp EE-TTS---SCCCCG---------GGGG-TT--EEE-TT-GGGG
T ss_pred EECcCCcCCChHHhH---------HHHcCCCcceeeccCCcccc
Confidence 555555554442210 13344555555555555544
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.9e-11 Score=102.07 Aligned_cols=201 Identities=16% Similarity=0.183 Sum_probs=115.7
Q ss_pred CceEEeecCCcCCcc----cCCCCCCccEEeccccccccc---CccccCCCCCCEEEeccCcccccccc-ccccccccce
Q 039599 71 SPVTIDFTSCINLTD----FPHISGNITRLYLDETAIEEV---PSSIKCLTNLKLLRINRCTRLKRVST-SICKLKSLIA 142 (293)
Q Consensus 71 ~L~~L~l~~~~~~~~----~~~~~~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~ 142 (293)
+|+++.+.++..... ....+.+++.|||++|-+..+ ..-...+|+|+.|+++.|...-.... .-..++.++.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 677777776662211 123355777777777765433 23346677777777777654322111 1124667777
Q ss_pred ecccccccCC-CCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--cccc--ccccCccccceecccCC
Q 039599 143 LSAYGCLNLE-RFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLS--DNIGNFKSFEYMGAHGS 217 (293)
Q Consensus 143 L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~--~~~~~l~~L~~L~l~~~ 217 (293)
|.++.|.+.. .+......+|+|+.|++.+|............+..|+.|++++| ..++ ...+.++.|+.++++.+
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence 7777776663 22333456677777777777422222223344566777777777 2222 34556777777777777
Q ss_pred CccCC--CCcCCCCccCcccccCCccccceeecCCccCCcCC--cccCCCCCCcEEeccCCcCC
Q 039599 218 AISQL--PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIP--QEIGYLSSLEWLHLRGNNLE 277 (293)
Q Consensus 218 ~~~~~--~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~--~~~~~~~~L~~L~l~~n~l~ 277 (293)
.+.++ |.. ..++. ....++|++|++..|+|.+.+ ..+..+++|+.|.+..|++.
T Consensus 282 gi~si~~~d~----~s~~k--t~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 282 GIASIAEPDV----ESLDK--THTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred CcchhcCCCc----cchhh--hcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 77666 221 11110 224567777777777776543 23555667777777777665
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=1.5e-10 Score=101.87 Aligned_cols=184 Identities=27% Similarity=0.361 Sum_probs=139.9
Q ss_pred EEecccccccccCccccCCCCCCEEEeccCcccccccccccccc-ccceecccccccCCCCChhhhccccCCceecCCCc
Q 039599 95 RLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLK-SLIALSAYGCLNLERFPESLEKMEHLNQINLGRTT 173 (293)
Q Consensus 95 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 173 (293)
.+.+..+.+..-...+...+.++.|++.++.+.. ++....... +|+.|++++|.+. .++..+..++.|+.|+++.|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 4677777764444445566788999999877554 555555664 8999999998554 455678889999999999999
Q ss_pred ccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCc
Q 039599 174 ITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNC 251 (293)
Q Consensus 174 ~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n 251 (293)
+. .++...+..++|+.|+++++ ..++........|+++.+++|.....+. .++.+.++..+.+.+|
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~-----------~~~~~~~l~~l~l~~n 242 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLS-----------SLSNLKNLSGLELSNN 242 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecch-----------hhhhcccccccccCCc
Confidence 95 45555557889999999998 6677666667779999999996444422 2456777888888999
Q ss_pred cCCcCCcccCCCCCCcEEeccCCcCCCCchhHhhcccCCCCC
Q 039599 252 ALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293 (293)
Q Consensus 252 ~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~ld 293 (293)
.+..++..++.+++++.|++++|.++.++. +..+.+++.+|
T Consensus 243 ~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~ 283 (394)
T COG4886 243 KLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELD 283 (394)
T ss_pred eeeeccchhccccccceecccccccccccc-ccccCccCEEe
Confidence 888878888999999999999999999876 66667776654
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.5e-11 Score=101.55 Aligned_cols=180 Identities=17% Similarity=0.166 Sum_probs=108.1
Q ss_pred CCCccEEecccccccccC--ccccCCCCCCEEEeccCccccccc--cccccccccceecccccccCCCCChh-hhccccC
Q 039599 90 SGNITRLYLDETAIEEVP--SSIKCLTNLKLLRINRCTRLKRVS--TSICKLKSLIALSAYGCLNLERFPES-LEKMEHL 164 (293)
Q Consensus 90 ~~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L 164 (293)
+.+|++..|.++.++..+ .....|++++.||++.|-+....+ .....+++|+.|+++.|.+.--.... -..++.|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 345666677777665444 245667777888887764433222 33346777888888777654221111 1245667
Q ss_pred CceecCCCcccccCCC-cccccccCceecCCCC-ccc--cccccCccccceecccCCCccCCCCcCCCCccCcccccCCc
Q 039599 165 NQINLGRTTITEQRPS-SFENVKGLETLGFSEL-DNL--SDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGL 240 (293)
Q Consensus 165 ~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~~-~~l--~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~ 240 (293)
+.|.+++|+++..-.. ....+++|+.|.+.+| ..+ ......++.|++|++++|.+..++... -.+.+
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~---------~~~~l 270 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY---------KVGTL 270 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccc---------ccccc
Confidence 7777877777532211 1234677777777777 222 112334567777888877776664311 14566
Q ss_pred cccceeecCCccCCc--CCcc-----cCCCCCCcEEeccCCcCCC
Q 039599 241 SLLYWLHLNNCALTS--IPQE-----IGYLSSLEWLHLRGNNLEG 278 (293)
Q Consensus 241 ~~L~~L~l~~n~i~~--l~~~-----~~~~~~L~~L~l~~n~l~~ 278 (293)
+.|..|+++.|.|.+ .|+. ...+++|+.|+++.|++.+
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence 777777777777776 4443 2357778888888887765
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=3.1e-10 Score=87.04 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=41.5
Q ss_pred cCceEEeecCCcCCc--ccCCCCCCccEEecccccccccCccccCCCCCCEEEeccCcccccccccc-ccccccceeccc
Q 039599 70 VSPVTIDFTSCINLT--DFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSI-CKLKSLIALSAY 146 (293)
Q Consensus 70 ~~L~~L~l~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~ 146 (293)
.++++|++.+|.+.. .+...+.+++.|++++|.+..+. .+..+++|++|++++|.+.. +.+.+ ..+++|++|+++
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECc
Confidence 356777777776332 11223456777777777777665 36667778888888776654 32223 356777788877
Q ss_pred ccccCCCC-ChhhhccccCCceecCCCcccccCC---CcccccccCceecC
Q 039599 147 GCLNLERF-PESLEKMEHLNQINLGRTTITEQRP---SSFENVKGLETLGF 193 (293)
Q Consensus 147 ~~~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l 193 (293)
+|.+...- -..++.+++|+.|++.+|+++..-- ..+..+|+|+.||-
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 77654311 1446677778888888887754311 12445667777654
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=3.7e-10 Score=91.41 Aligned_cols=196 Identities=13% Similarity=0.080 Sum_probs=90.7
Q ss_pred eEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCCCCCccEEeccccc--c--cccCccccCCCCCCEEEeccC
Q 039599 49 EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETA--I--EEVPSSIKCLTNLKLLRINRC 124 (293)
Q Consensus 49 l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~--~--~~l~~~~~~l~~L~~L~l~~~ 124 (293)
+..+.++.|..-....-...-+.|+++.+.+.. ....|...+.-..-|..+.. . +.+...+.-.+.|+.+|+++|
T Consensus 216 l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~-~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N 294 (490)
T KOG1259|consen 216 LKTLKFSALSTENIVDIELLKPTLQTICVHNTT-IQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGN 294 (490)
T ss_pred hheeeeeccchhheeceeecCchhheeeeeccc-ccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcccccc
Confidence 666777776532211111223477777776554 33333222211111111111 0 011112223345555566655
Q ss_pred ccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC-ccccccc
Q 039599 125 TRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL-DNLSDNI 203 (293)
Q Consensus 125 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~ 203 (293)
.+. .+.+++.-.|.++.|++++|.+.. + ..++.+++|+.||+++|.++.. ...=.++.++++|.+++| .+-.+.+
T Consensus 295 ~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N~iE~LSGL 370 (490)
T KOG1259|consen 295 LIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLAQNKIETLSGL 370 (490)
T ss_pred chh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhHhh-hhhHhhhcCEeeeehhhhhHhhhhhh
Confidence 432 234444445555666666554332 1 1245555666666666655322 111123455556666655 2222345
Q ss_pred cCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCc
Q 039599 204 GNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQ 258 (293)
Q Consensus 204 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~ 258 (293)
.++.+|..|++.+|++...... ..++.+|.|+.+.+.+|.+..+++
T Consensus 371 ~KLYSLvnLDl~~N~Ie~ldeV---------~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 371 RKLYSLVNLDLSSNQIEELDEV---------NHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred HhhhhheeccccccchhhHHHh---------cccccccHHHHHhhcCCCccccch
Confidence 5566666666666666554210 025566666777777766655443
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.87 E-value=1.7e-09 Score=102.63 Aligned_cols=192 Identities=19% Similarity=0.252 Sum_probs=117.6
Q ss_pred ccccEEEEeccceeeec-c---cceEEEeccCCcc-cccCCC--CCCCcCceEEeecCCcCCcccCCCCC---CccEEec
Q 039599 29 SNLRVLKFYIPEISVHM-S---IEEQLLDSKGCKI-LRSFPS--NLHFVSPVTIDFTSCINLTDFPHISG---NITRLYL 98 (293)
Q Consensus 29 ~~L~~L~l~~~~~~~~~-~---~~l~~L~l~~~~~-~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l 98 (293)
...+...+-++.+...+ + ..++.|-+.++.. ...++. ...++.|++||+++|.....+|..++ +|++|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 44555555555543111 1 1277777777652 344444 23466999999999888888887655 7888899
Q ss_pred ccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccC--CCCChhhhccccCCceecCCCcccc
Q 039599 99 DETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNL--ERFPESLEKMEHLNQINLGRTTITE 176 (293)
Q Consensus 99 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~n~~~~ 176 (293)
+++.+..+|..+.++..|.+|++..+......+.....+.+|++|.+..-... ......+..+..|+.+.......
T Consensus 603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-- 680 (889)
T KOG4658|consen 603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-- 680 (889)
T ss_pred cCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--
Confidence 99999999999999999999999887666555666666888998888664311 11223334444555554432221
Q ss_pred cCCCcccccccCc----eecCCCC--ccccccccCccccceecccCCCccCC
Q 039599 177 QRPSSFENVKGLE----TLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQL 222 (293)
Q Consensus 177 ~~~~~~~~~~~L~----~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~ 222 (293)
.+...+..+..|. .+.+.++ ......+..+.+|+.|.+.++.+...
T Consensus 681 ~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 681 LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEI 732 (889)
T ss_pred HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchh
Confidence 0111112222222 2222222 44555677788888888888877654
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.87 E-value=4e-09 Score=97.59 Aligned_cols=104 Identities=20% Similarity=0.286 Sum_probs=62.6
Q ss_pred ccEEeccccccc-ccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCC
Q 039599 93 ITRLYLDETAIE-EVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR 171 (293)
Q Consensus 93 L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 171 (293)
++.|+|++|.+. .+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|+.+..+++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 455566666653 5555666666666666666666656666666666666666666666666666666666666666666
Q ss_pred CcccccCCCccccc-ccCceecCCCC
Q 039599 172 TTITEQRPSSFENV-KGLETLGFSEL 196 (293)
Q Consensus 172 n~~~~~~~~~~~~~-~~L~~L~l~~~ 196 (293)
|.+.+.+|..+... .++..+++.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChHHhhccccCceEEecCC
Confidence 66666666554432 23444555444
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.87 E-value=2.1e-10 Score=94.34 Aligned_cols=214 Identities=19% Similarity=0.227 Sum_probs=139.1
Q ss_pred CceEEeecCCcCCccc-------CCCCCCccEEeccccc----ccccCc-------cccCCCCCCEEEeccCcccccccc
Q 039599 71 SPVTIDFTSCINLTDF-------PHISGNITRLYLDETA----IEEVPS-------SIKCLTNLKLLRINRCTRLKRVST 132 (293)
Q Consensus 71 ~L~~L~l~~~~~~~~~-------~~~~~~L~~L~l~~~~----~~~l~~-------~~~~l~~L~~L~l~~~~~~~~~~~ 132 (293)
.++.+++++|.+...- -....+|+..++++-. ..++|+ ++..++.|+++++++|.+....++
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~ 110 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR 110 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence 5667777776644321 1122355555555421 234443 445677889999998876654443
Q ss_pred ----ccccccccceecccccccCCCC-------------ChhhhccccCCceecCCCcccccCC----CcccccccCcee
Q 039599 133 ----SICKLKSLIALSAYGCLNLERF-------------PESLEKMEHLNQINLGRTTITEQRP----SSFENVKGLETL 191 (293)
Q Consensus 133 ----~l~~l~~L~~L~l~~~~~~~~~-------------~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L 191 (293)
.+.++..|++|.+.+|.+...- ......-++|+++...+|.+..... ..|...+.|+.+
T Consensus 111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leev 190 (382)
T KOG1909|consen 111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEV 190 (382)
T ss_pred HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceE
Confidence 3456788999999888665211 1122344689999999998843221 235556889999
Q ss_pred cCCCCc-------cccccccCccccceecccCCCccCCCC--cCCCCccCcccccCCccccceeecCCccCCc-----CC
Q 039599 192 GFSELD-------NLSDNIGNFKSFEYMGAHGSAISQLPS--LSSGLVPLSASLLSGLSLLYWLHLNNCALTS-----IP 257 (293)
Q Consensus 192 ~l~~~~-------~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-----l~ 257 (293)
.+..|+ .+...+.++++|+.|++..|.++..-. +.. .++.+++|+++++++|.+.. +.
T Consensus 191 r~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak--------aL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 191 RLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK--------ALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred EEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH--------HhcccchheeecccccccccccHHHHH
Confidence 998882 234467899999999999998876511 111 15567889999999998876 22
Q ss_pred ccc-CCCCCCcEEeccCCcCCC-----CchhHhhcccCCCC
Q 039599 258 QEI-GYLSSLEWLHLRGNNLEG-----LPASIKQISRLESL 292 (293)
Q Consensus 258 ~~~-~~~~~L~~L~l~~n~l~~-----~p~~l~~l~~L~~l 292 (293)
.++ ...|+|+.+++.+|.++. +...+...+.|.+|
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kL 303 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKL 303 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHh
Confidence 333 358999999999999983 33344455666554
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=1.2e-09 Score=96.46 Aligned_cols=192 Identities=20% Similarity=0.243 Sum_probs=106.3
Q ss_pred CceEEeecCCcCCccc--CCCCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceeccccc
Q 039599 71 SPVTIDFTSCINLTDF--PHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGC 148 (293)
Q Consensus 71 ~L~~L~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 148 (293)
.++.+++..+.+.... ...+.++..+++.+|.+..+...+..+++|++|++++|.+....+ +..++.|+.|++.+|
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN 150 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccC
Confidence 4445555555533211 234456666677777776665555666777777777766544322 345555777777776
Q ss_pred ccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC-ccccccccCccccceecccCCCccCCCCcCC
Q 039599 149 LNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL-DNLSDNIGNFKSFEYMGAHGSAISQLPSLSS 227 (293)
Q Consensus 149 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~ 227 (293)
.+.. + +.+..++.|+.+++++|.+...-+.....+.+++.+.+.++ ......+..+..+..+.+..|.+..+..
T Consensus 151 ~i~~-~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~--- 225 (414)
T KOG0531|consen 151 LISD-I-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEG--- 225 (414)
T ss_pred cchh-c-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccC---
Confidence 4432 1 22344666777777777664433200345566666666666 2223333344444444555555544411
Q ss_pred CCccCcccccCCcc--ccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCC
Q 039599 228 GLVPLSASLLSGLS--LLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEG 278 (293)
Q Consensus 228 ~l~~l~~~~~~~~~--~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~ 278 (293)
+..+. +|+.+++++|++..++..+..++.+..+++..|++..
T Consensus 226 ---------l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 226 ---------LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred ---------cccchhHHHHHHhcccCccccccccccccccccccchhhccccc
Confidence 11112 2677777777777665556667777777777776653
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.73 E-value=1.6e-08 Score=93.60 Aligned_cols=83 Identities=23% Similarity=0.374 Sum_probs=47.8
Q ss_pred cceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC---ccccccccCccccceecccC
Q 039599 140 LIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHG 216 (293)
Q Consensus 140 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~ 216 (293)
++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++| +.+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 455555555555555555555556666666666555555555555556666666555 34555555556666666666
Q ss_pred CCccCC
Q 039599 217 SAISQL 222 (293)
Q Consensus 217 ~~~~~~ 222 (293)
|.+.+.
T Consensus 500 N~l~g~ 505 (623)
T PLN03150 500 NSLSGR 505 (623)
T ss_pred Cccccc
Confidence 555543
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.69 E-value=2.1e-08 Score=63.28 Aligned_cols=58 Identities=22% Similarity=0.269 Sum_probs=36.7
Q ss_pred CccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccc
Q 039599 92 NITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL 149 (293)
Q Consensus 92 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 149 (293)
+|++|++++|.+..+|+ .|.++++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666666664 55666777777777666655445556666666666666653
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.64 E-value=2.8e-08 Score=62.70 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=37.9
Q ss_pred CCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcc
Q 039599 114 TNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTI 174 (293)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 174 (293)
++|++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566777777655543345566666777777776665544455666666666666666653
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.60 E-value=5.7e-08 Score=92.39 Aligned_cols=199 Identities=21% Similarity=0.252 Sum_probs=95.3
Q ss_pred CccEEeccccc--ccccCcc-ccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCcee
Q 039599 92 NITRLYLDETA--IEEVPSS-IKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQIN 168 (293)
Q Consensus 92 ~L~~L~l~~~~--~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 168 (293)
+|+.|-+.+|. +..++.. |..++.|++||+++|.....+|..++.+-+|++|+++++. ...+|..++++++|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheec
Confidence 45555555543 3444432 4556666666666655555566666666666666666653 235566666666666666
Q ss_pred cCCCcccccCCCcccccccCceecCCCC-----ccccccccCccccceecccCCCc---cCC---CCcCCCCccCc----
Q 039599 169 LGRTTITEQRPSSFENVKGLETLGFSEL-----DNLSDNIGNFKSFEYMGAHGSAI---SQL---PSLSSGLVPLS---- 233 (293)
Q Consensus 169 l~~n~~~~~~~~~~~~~~~L~~L~l~~~-----~~l~~~~~~l~~L~~L~l~~~~~---~~~---~~l~~~l~~l~---- 233 (293)
+..+.....++.....+.+|++|.+... ......+..+.+|+.+....... ..+ +.+....+.+.
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~ 704 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC 704 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc
Confidence 6655443333333444566666655443 11122333444444444332222 000 00000000000
Q ss_pred -----ccccCCccccceeecCCccCCcCCc-cc-----CC-CCCCcEEeccCCcCCCCchhHhhcccCCC
Q 039599 234 -----ASLLSGLSLLYWLHLNNCALTSIPQ-EI-----GY-LSSLEWLHLRGNNLEGLPASIKQISRLES 291 (293)
Q Consensus 234 -----~~~~~~~~~L~~L~l~~n~i~~l~~-~~-----~~-~~~L~~L~l~~n~l~~~p~~l~~l~~L~~ 291 (293)
...++.+.+|+.|.+.+|.+.++.. +. .. ++++..+...++..-..+.+..-.++|+.
T Consensus 705 ~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~ 774 (889)
T KOG4658|consen 705 SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTS 774 (889)
T ss_pred ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccE
Confidence 0125567778888888887765221 11 11 33455555555544444444444555554
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1e-09 Score=88.68 Aligned_cols=153 Identities=16% Similarity=0.136 Sum_probs=85.5
Q ss_pred cceecccccccCC-CCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCCcccc-----ccccCccccceec
Q 039599 140 LIALSAYGCLNLE-RFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLS-----DNIGNFKSFEYMG 213 (293)
Q Consensus 140 L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~~~~~l~~L~~L~ 213 (293)
++++|++...+.. .+...++.+.+|+.|.+.|+.+.+.+...+.+..+|+.++++.+..+. -.+..++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 5555555543331 122234555566666666666655544455555566666666552221 1334555666666
Q ss_pred ccCCCccCC------CCcCCCCccCcccc-------------cCCccccceeecCCc-cCCc-CCcccCCCCCCcEEecc
Q 039599 214 AHGSAISQL------PSLSSGLVPLSASL-------------LSGLSLLYWLHLNNC-ALTS-IPQEIGYLSSLEWLHLR 272 (293)
Q Consensus 214 l~~~~~~~~------~~l~~~l~~l~~~~-------------~~~~~~L~~L~l~~n-~i~~-l~~~~~~~~~L~~L~l~ 272 (293)
++.|..... ..+.+.++.|+++. .+.+++|.+||+++| .++. ....+..++.|+.|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 665554332 11335555555432 457889999999988 4555 44456678889999999
Q ss_pred CCcCCCCch---hHhhcccCCCCC
Q 039599 273 GNNLEGLPA---SIKQISRLESLD 293 (293)
Q Consensus 273 ~n~l~~~p~---~l~~l~~L~~ld 293 (293)
.|+.- +|. .+.+.|+|.+||
T Consensus 347 RCY~i-~p~~~~~l~s~psl~yLd 369 (419)
T KOG2120|consen 347 RCYDI-IPETLLELNSKPSLVYLD 369 (419)
T ss_pred hhcCC-ChHHeeeeccCcceEEEE
Confidence 88643 121 244556665553
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.55 E-value=7e-08 Score=56.11 Aligned_cols=41 Identities=32% Similarity=0.447 Sum_probs=35.1
Q ss_pred cccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCch
Q 039599 241 SLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPA 281 (293)
Q Consensus 241 ~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~ 281 (293)
++|++|++++|.|+++|..++.+++|+.|++++|+++++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 46899999999999998889999999999999999997654
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.53 E-value=1.5e-08 Score=89.64 Aligned_cols=185 Identities=22% Similarity=0.293 Sum_probs=131.0
Q ss_pred CCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceec
Q 039599 90 SGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINL 169 (293)
Q Consensus 90 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 169 (293)
+..++.+.+..|.+++....+..+++|..|++.+|.+... ...+..+++|++|++++|.+.. + ..+..++.|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~-i-~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITK-L-EGLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccc-c-cchhhccchhhhee
Confidence 4466677788888887656678889999999999876553 3226789999999999996654 3 34667778999999
Q ss_pred CCCcccccCCCcccccccCceecCCCC--cccccc-ccCccccceecccCCCccCCCCcCCCCccCcccccCCcccccee
Q 039599 170 GRTTITEQRPSSFENVKGLETLGFSEL--DNLSDN-IGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWL 246 (293)
Q Consensus 170 ~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~-~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L 246 (293)
++|.+... ..+..++.|+.+++++| ..+... ...+..++.+.+.+|.+..+.. +..+..+..+
T Consensus 148 ~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~------------~~~~~~l~~~ 213 (414)
T KOG0531|consen 148 SGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG------------LDLLKKLVLL 213 (414)
T ss_pred ccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc------------hHHHHHHHHh
Confidence 99999543 34556889999999998 223221 4788899999999998877632 2233445556
Q ss_pred ecCCccCCcCCcccCCCCC--CcEEeccCCcCCCCchhHhhcccCCCC
Q 039599 247 HLNNCALTSIPQEIGYLSS--LEWLHLRGNNLEGLPASIKQISRLESL 292 (293)
Q Consensus 247 ~l~~n~i~~l~~~~~~~~~--L~~L~l~~n~l~~~p~~l~~l~~L~~l 292 (293)
++..|.++.+-+ +..++. |+.+++++|.+..++..+..+..+..+
T Consensus 214 ~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l 260 (414)
T KOG0531|consen 214 SLLDNKISKLEG-LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVL 260 (414)
T ss_pred hcccccceeccC-cccchhHHHHHHhcccCcccccccccccccccccc
Confidence 788887776432 223333 899999999998765444444444443
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=8.8e-09 Score=83.43 Aligned_cols=174 Identities=18% Similarity=0.219 Sum_probs=100.8
Q ss_pred CccEEeccccccc--ccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCC--hhhhccccCCce
Q 039599 92 NITRLYLDETAIE--EVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFP--ESLEKMEHLNQI 167 (293)
Q Consensus 92 ~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L 167 (293)
.+++|||+...++ .+...++.|.+|+.|.+.++.....+...+....+|+.++++.|.-..... -.+..++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4777777777664 333345667777777777777666665666677777777777765443322 235667777788
Q ss_pred ecCCCcccccCCCc-ccc-cccCceecCCCC-cc-----ccccccCccccceecccCCCccCCCCcCCCCccCcccccCC
Q 039599 168 NLGRTTITEQRPSS-FEN-VKGLETLGFSEL-DN-----LSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSG 239 (293)
Q Consensus 168 ~l~~n~~~~~~~~~-~~~-~~~L~~L~l~~~-~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~ 239 (293)
++++|......... +.+ -++|..|+++|+ .. +.--..+++++.+|++++|..-.- ... ..+-.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~--------~~~~k 336 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCF--------QEFFK 336 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHH--------HHHHh
Confidence 88777664322211 222 256777777776 11 122234677777777776642211 100 01335
Q ss_pred ccccceeecCCcc-CCc-CCcccCCCCCCcEEeccCC
Q 039599 240 LSLLYWLHLNNCA-LTS-IPQEIGYLSSLEWLHLRGN 274 (293)
Q Consensus 240 ~~~L~~L~l~~n~-i~~-l~~~~~~~~~L~~L~l~~n 274 (293)
++.|++|.++.|. |.. ---.+...|+|.+||+-++
T Consensus 337 f~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 5667777777773 211 1112456777777777765
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.40 E-value=4.3e-09 Score=88.76 Aligned_cols=275 Identities=15% Similarity=0.198 Sum_probs=161.1
Q ss_pred ecCcccceeech--hhccCCccccEEEEeccceeeecccc--------eEEEeccCCcccccCC---CCCCCcCceEEee
Q 039599 11 NLSTIKGINLNL--RAFSNMSNLRVLKFYIPEISVHMSIE--------EQLLDSKGCKILRSFP---SNLHFVSPVTIDF 77 (293)
Q Consensus 11 ~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~--------l~~L~l~~~~~~~~~~---~~~~~~~L~~L~l 77 (293)
.+.++..+...+ ..-.+++++++|++.+|....+.... ++++++.+|....... -.-++++|++|++
T Consensus 144 SlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNl 223 (483)
T KOG4341|consen 144 SLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNL 223 (483)
T ss_pred cccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhh
Confidence 445554443332 24457778888888888755443222 7888888876433211 1235778999999
Q ss_pred cCCcCCcc-----cCCCCCCccEEeccccccc---ccCccccCCCCCCEEEeccCccccccc--cccccccccceecccc
Q 039599 78 TSCINLTD-----FPHISGNITRLYLDETAIE---EVPSSIKCLTNLKLLRINRCTRLKRVS--TSICKLKSLIALSAYG 147 (293)
Q Consensus 78 ~~~~~~~~-----~~~~~~~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~ 147 (293)
++|+..+. +..+...++.+.+.||.-. .+...-..+..+..+++..|....... ..-..+..|+.++.+.
T Consensus 224 Swc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~ 303 (483)
T KOG4341|consen 224 SWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSS 303 (483)
T ss_pred ccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccC
Confidence 99886554 1223334555555554321 111222445566777776765443322 1123467888898888
Q ss_pred cccCCCCC--hhhhccccCCceecCCCc-ccccCCCcc-cccccCceecCCCC-----ccccccccCccccceecccCCC
Q 039599 148 CLNLERFP--ESLEKMEHLNQINLGRTT-ITEQRPSSF-ENVKGLETLGFSEL-----DNLSDNIGNFKSFEYMGAHGSA 218 (293)
Q Consensus 148 ~~~~~~~~--~~~~~l~~L~~L~l~~n~-~~~~~~~~~-~~~~~L~~L~l~~~-----~~l~~~~~~l~~L~~L~l~~~~ 218 (293)
|...+..+ ....+..+|+.+.++++. +++.....+ .+++.|+.+++.++ ..+.....+++.|+.+.+++|.
T Consensus 304 ~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce 383 (483)
T KOG4341|consen 304 CTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCE 383 (483)
T ss_pred CCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhh
Confidence 76654322 234567889999998875 322222222 36788999998887 2344455678889999998876
Q ss_pred ccCCCCcCCCCccCcccccCCccccceeecCCcc-CCc-CCcccCCCCCCcEEeccCCc-CCC--CchhHhhcccCC
Q 039599 219 ISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCA-LTS-IPQEIGYLSSLEWLHLRGNN-LEG--LPASIKQISRLE 290 (293)
Q Consensus 219 ~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~-i~~-l~~~~~~~~~L~~L~l~~n~-l~~--~p~~l~~l~~L~ 290 (293)
..... +++.+.. .-.+...++.+.++++. +++ .-..+..+++|+.+++-+++ ++. +...-.++|+++
T Consensus 384 ~itD~----gi~~l~~-~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~ 455 (483)
T KOG4341|consen 384 LITDE----GIRHLSS-SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIK 455 (483)
T ss_pred hhhhh----hhhhhhh-ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccce
Confidence 43331 1111111 01245667888888885 444 44456778899999988874 332 444445566654
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=9.4e-08 Score=77.57 Aligned_cols=197 Identities=15% Similarity=0.098 Sum_probs=102.9
Q ss_pred ceEEeecCCcCCcc-----cCCCCCCccEEecccccccccC---ccccCCCCCCEEEeccCcccccccccccccccccee
Q 039599 72 PVTIDFTSCINLTD-----FPHISGNITRLYLDETAIEEVP---SSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIAL 143 (293)
Q Consensus 72 L~~L~l~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 143 (293)
++.+.+.+|.+-.. +......++++||.+|.+..+. ..+.++|.|++|+++.|.....+...-....+|+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 44555666653321 2233457888888888876443 344778888888888877654332111245577888
Q ss_pred cccccccCC-CCChhhhccccCCceecCCCcccccCC--Ccccc-cccCceecCCCC-----ccccccccCccccceecc
Q 039599 144 SAYGCLNLE-RFPESLEKMEHLNQINLGRTTITEQRP--SSFEN-VKGLETLGFSEL-----DNLSDNIGNFKSFEYMGA 214 (293)
Q Consensus 144 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~-~~~L~~L~l~~~-----~~l~~~~~~l~~L~~L~l 214 (293)
.+.+..+.. .....+..++++++|.++-|.+..... ..... -+.+.+++...| ...-......+++..+.+
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v 206 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV 206 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence 777764442 233445667777777777764311000 01111 124555555555 011111122345555555
Q ss_pred cCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCc--CCcccCCCCCCcEEeccCCcCC
Q 039599 215 HGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS--IPQEIGYLSSLEWLHLRGNNLE 277 (293)
Q Consensus 215 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~--l~~~~~~~~~L~~L~l~~n~l~ 277 (293)
-.|++.+...- . .+...+.+..|+++.++|.+ --+++..++.|..|.++++.+.
T Consensus 207 ~e~PlK~~s~e-k--------~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 207 CEGPLKTESSE-K--------GSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred ecCcccchhhc-c--------cCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 55555443110 0 12233444556666666655 2244566666666777666654
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.22 E-value=3.1e-06 Score=73.13 Aligned_cols=133 Identities=23% Similarity=0.339 Sum_probs=79.9
Q ss_pred ccCCccccEEEEeccceeeecccc--eEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCCCCCccEEeccccc
Q 039599 25 FSNMSNLRVLKFYIPEISVHMSIE--EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETA 102 (293)
Q Consensus 25 ~~~~~~L~~L~l~~~~~~~~~~~~--l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~ 102 (293)
+..+.++++|++++|.+...+.+. |+.|.+++|..+..+|..+ ..+|+.|++++|..+..+|. .|+.|++..+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~---sLe~L~L~~n~ 123 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPVLPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPE---SVRSLEIKGSA 123 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCCCCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccc---ccceEEeCCCC
Confidence 445688999999999777555443 9999999988877777644 24899999999965666665 46677776654
Q ss_pred ---ccccCccccCCCCCCEEEeccCcccc--ccccccccccccceecccccccCCCCChhhhccccCCceecCCC
Q 039599 103 ---IEEVPSSIKCLTNLKLLRINRCTRLK--RVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRT 172 (293)
Q Consensus 103 ---~~~l~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 172 (293)
+..+|+. |+.|.+.+++... ..+.. -.++|++|++++|.... +|+.+- .+|+.|.++.+
T Consensus 124 ~~~L~~LPss------Lk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 124 TDSIKNVPNG------LTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccccCcch------Hhheeccccccccccccccc--cCCcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence 3455553 4455553322110 01100 11356777776665431 222111 35666666554
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.20 E-value=1.4e-07 Score=67.92 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=45.3
Q ss_pred CCceecCCCcccccCCCccc---ccccCceecCCCC--cccccccc-CccccceecccCCCccCCCCcCCCCccCccccc
Q 039599 164 LNQINLGRTTITEQRPSSFE---NVKGLETLGFSEL--DNLSDNIG-NFKSFEYMGAHGSAISQLPSLSSGLVPLSASLL 237 (293)
Q Consensus 164 L~~L~l~~n~~~~~~~~~~~---~~~~L~~L~l~~~--~~l~~~~~-~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~ 237 (293)
+..++++.|.+ ..+++... ....|...++++| ..+|..+. +.+.++.+++.+|.++++|. -+
T Consensus 29 ~h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPe-----------E~ 96 (177)
T KOG4579|consen 29 LHFLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPE-----------EL 96 (177)
T ss_pred hhhcccccchh-hHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchH-----------HH
Confidence 45566666655 23333322 2334444455555 33443332 22344444444444444443 12
Q ss_pred CCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCC
Q 039599 238 SGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEG 278 (293)
Q Consensus 238 ~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~ 278 (293)
+.++.|+.++++.|.+...|..+..+.++..|+..+|.+..
T Consensus 97 Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 97 AAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAE 137 (177)
T ss_pred hhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcccc
Confidence 34444444444444444444333334444444444444443
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.14 E-value=6.6e-08 Score=77.47 Aligned_cols=238 Identities=14% Similarity=0.097 Sum_probs=115.0
Q ss_pred hhccCCccccEEEEeccceeeecccc----------eEEEeccCCccccc------------CCCCCCCcCceEEeecCC
Q 039599 23 RAFSNMSNLRVLKFYIPEISVHMSIE----------EQLLDSKGCKILRS------------FPSNLHFVSPVTIDFTSC 80 (293)
Q Consensus 23 ~~~~~~~~L~~L~l~~~~~~~~~~~~----------l~~L~l~~~~~~~~------------~~~~~~~~~L~~L~l~~~ 80 (293)
..+..|..++.+++++|.+.....-. |+...++.- +++. ++....|++|+..++++|
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 34455677778888887776432100 343333332 1111 123346778888888888
Q ss_pred cCCcccCCCC-------CCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccccCC
Q 039599 81 INLTDFPHIS-------GNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLE 152 (293)
Q Consensus 81 ~~~~~~~~~~-------~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 152 (293)
.+...+|..+ ..|.+|.+++|+++.+.. .++. .|.+| ..| ....+-|.|+++++.+|++..
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~l--a~n-------KKaa~kp~Le~vicgrNRlen 171 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHL--AYN-------KKAADKPKLEVVICGRNRLEN 171 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHH--HHH-------hhhccCCCceEEEeccchhcc
Confidence 7766665432 356667777776653321 0100 00000 000 011233455555555554331
Q ss_pred C----CChhhhccccCCceecCCCcccccCCC-----cccccccCceecCCCC-------ccccccccCccccceecccC
Q 039599 153 R----FPESLEKMEHLNQINLGRTTITEQRPS-----SFENVKGLETLGFSEL-------DNLSDNIGNFKSFEYMGAHG 216 (293)
Q Consensus 153 ~----~~~~~~~l~~L~~L~l~~n~~~~~~~~-----~~~~~~~L~~L~l~~~-------~~l~~~~~~l~~L~~L~l~~ 216 (293)
- ....+.....|+++.+..|.+.-.... .+.-+++|+.|++.+| ..+...+..|+.|+.|.++.
T Consensus 172 gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnD 251 (388)
T COG5238 172 GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND 251 (388)
T ss_pred CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccc
Confidence 0 011122334566666666655221110 1223456666666666 22334455666677777777
Q ss_pred CCccCC-C-CcCCCCccCcccccCCccccceeecCCccCCc--C-----Cccc-CCCCCCcEEeccCCcCCC
Q 039599 217 SAISQL-P-SLSSGLVPLSASLLSGLSLLYWLHLNNCALTS--I-----PQEI-GYLSSLEWLHLRGNNLEG 278 (293)
Q Consensus 217 ~~~~~~-~-~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~--l-----~~~~-~~~~~L~~L~l~~n~l~~ 278 (293)
|.++.. . ....... =...++|+.|...+|.+.. + +... ..+|-|..|.+.+|.+..
T Consensus 252 Clls~~G~~~v~~~f~------e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 252 CLLSNEGVKSVLRRFN------EKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hhhccccHHHHHHHhh------hhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 766543 1 1100000 0123556667777764432 1 1111 346777777777777764
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.10 E-value=1.5e-07 Score=85.00 Aligned_cols=87 Identities=20% Similarity=0.210 Sum_probs=38.6
Q ss_pred cccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCC-cccccccCceecCCCC-ccccccccCcccc
Q 039599 132 TSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPS-SFENVKGLETLGFSEL-DNLSDNIGNFKSF 209 (293)
Q Consensus 132 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~~-~~l~~~~~~l~~L 209 (293)
.++.-++.++.|++++|++... ..+..+++|++||+++|.+. .+|. ....++ |+.|.+.+| -+-...+.++++|
T Consensus 181 ~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL 256 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTLRGIENLKSL 256 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhhhhHHhhhhh
Confidence 3344445555555555544321 14445555555555555552 2222 112222 555555554 1112234445555
Q ss_pred ceecccCCCccCC
Q 039599 210 EYMGAHGSAISQL 222 (293)
Q Consensus 210 ~~L~l~~~~~~~~ 222 (293)
+.|+++.|-+.+.
T Consensus 257 ~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEH 269 (1096)
T ss_pred hccchhHhhhhcc
Confidence 5555555544443
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.09 E-value=8.3e-07 Score=71.31 Aligned_cols=199 Identities=16% Similarity=0.181 Sum_probs=122.9
Q ss_pred CceEEeecCCcCCcccCC----C---CCCccEEeccccccc----ccC-------ccccCCCCCCEEEeccCcccccccc
Q 039599 71 SPVTIDFTSCINLTDFPH----I---SGNITRLYLDETAIE----EVP-------SSIKCLTNLKLLRINRCTRLKRVST 132 (293)
Q Consensus 71 ~L~~L~l~~~~~~~~~~~----~---~~~L~~L~l~~~~~~----~l~-------~~~~~l~~L~~L~l~~~~~~~~~~~ 132 (293)
.+..+++++|.+.++-.. . ..+|+..++++-..+ +++ +++..||+|+..++++|.+....|+
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 788899999986654221 1 235555555553221 332 4566788899999998877666654
Q ss_pred c----cccccccceecccccccCC----CCChhh---------hccccCCceecCCCcccccCCCc-----ccccccCce
Q 039599 133 S----ICKLKSLIALSAYGCLNLE----RFPESL---------EKMEHLNQINLGRTTITEQRPSS-----FENVKGLET 190 (293)
Q Consensus 133 ~----l~~l~~L~~L~l~~~~~~~----~~~~~~---------~~l~~L~~L~l~~n~~~~~~~~~-----~~~~~~L~~ 190 (293)
. +++-..|++|.+++|.+.. .+..++ ..-|.|++.....|.+ ...+.. +..-.+|++
T Consensus 111 ~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl-engs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL-ENGSKELSAALLESHENLKE 189 (388)
T ss_pred HHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh-ccCcHHHHHHHHHhhcCcee
Confidence 3 4456788888888886542 122111 2346788888888877 334432 111246777
Q ss_pred ecCCCCccccc--------cccCccccceecccCCCccCC-CC-cCCCCccCcccccCCccccceeecCCccCCc--CCc
Q 039599 191 LGFSELDNLSD--------NIGNFKSFEYMGAHGSAISQL-PS-LSSGLVPLSASLLSGLSLLYWLHLNNCALTS--IPQ 258 (293)
Q Consensus 191 L~l~~~~~l~~--------~~~~l~~L~~L~l~~~~~~~~-~~-l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~--l~~ 258 (293)
+.+..|+.-|. .+..+++|+.|++..|.++.. .. +.. .+..++.|++|.+..|-++. ...
T Consensus 190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~--------al~~W~~lrEL~lnDClls~~G~~~ 261 (388)
T COG5238 190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD--------ALCEWNLLRELRLNDCLLSNEGVKS 261 (388)
T ss_pred EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH--------HhcccchhhhccccchhhccccHHH
Confidence 87777733333 345677888888888877655 11 110 13456678888888887654 211
Q ss_pred ---cc--CCCCCCcEEeccCCcCCC
Q 039599 259 ---EI--GYLSSLEWLHLRGNNLEG 278 (293)
Q Consensus 259 ---~~--~~~~~L~~L~l~~n~l~~ 278 (293)
.+ ...|+|+.|...+|...+
T Consensus 262 v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 262 VLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred HHHHhhhhcCCCccccccchhhhcC
Confidence 12 247888888888887653
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.01 E-value=1e-07 Score=85.96 Aligned_cols=101 Identities=27% Similarity=0.321 Sum_probs=52.1
Q ss_pred CCceecCCCcccccCCCcccccccCceecCCCCc-cccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccc
Q 039599 164 LNQINLGRTTITEQRPSSFENVKGLETLGFSELD-NLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSL 242 (293)
Q Consensus 164 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 242 (293)
|.+.+.+.|.+. .+-.++.-++.++.|++++|+ .-...+..++.|++|+++.|.+..+|.+. -.++ .
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~----------~~gc-~ 233 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLS----------MVGC-K 233 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccc----------hhhh-h
Confidence 455555555552 222344445566666666661 11224555666666666666666665532 1122 2
Q ss_pred cceeecCCccCCcCCcccCCCCCCcEEeccCCcCC
Q 039599 243 LYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLE 277 (293)
Q Consensus 243 L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~ 277 (293)
|+.|.+++|.++.+.+ +.++++|+.||+++|-+.
T Consensus 234 L~~L~lrnN~l~tL~g-ie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTLRG-IENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred heeeeecccHHHhhhh-HHhhhhhhccchhHhhhh
Confidence 5555555555554432 445555555555555444
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.00 E-value=1.9e-05 Score=68.35 Aligned_cols=65 Identities=25% Similarity=0.423 Sum_probs=37.2
Q ss_pred eEEEeccCCcccccCCCCCCCc-CceEEeecCCcCCcccCCCC-CCccEEecccc-cccccCccccCCCCCCEEEecc
Q 039599 49 EQLLDSKGCKILRSFPSNLHFV-SPVTIDFTSCINLTDFPHIS-GNITRLYLDET-AIEEVPSSIKCLTNLKLLRINR 123 (293)
Q Consensus 49 l~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~-~~~~l~~~~~~l~~L~~L~l~~ 123 (293)
++.|++++|. +..+| ..+ +|+.|++++|..++.+|..+ .+|++|++++| .+..+|+ +|+.|++..
T Consensus 54 l~~L~Is~c~-L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~ 121 (426)
T PRK15386 54 SGRLYIKDCD-IESLP---VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPE------SVRSLEIKG 121 (426)
T ss_pred CCEEEeCCCC-CcccC---CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccccc------ccceEEeCC
Confidence 5666776663 44445 234 66777777666666666443 36666666665 4555543 345555544
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=1.5e-05 Score=46.30 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=27.1
Q ss_pred CccEEecccccccccCccccCCCCCCEEEeccCccc
Q 039599 92 NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRL 127 (293)
Q Consensus 92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~ 127 (293)
+|++|++++|+++.+|+.++++++|++|++++|.+.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 577888888888888777888888888888887654
No 56
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.80 E-value=4.1e-07 Score=77.04 Aligned_cols=236 Identities=19% Similarity=0.204 Sum_probs=122.0
Q ss_pred eEEEeccCCcccccCCC---CCCCcCceEEeecCCcCCccc-----CCCCCCccEEecccc-cccccC-c-cccCCCCCC
Q 039599 49 EQLLDSKGCKILRSFPS---NLHFVSPVTIDFTSCINLTDF-----PHISGNITRLYLDET-AIEEVP-S-SIKCLTNLK 117 (293)
Q Consensus 49 l~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~-----~~~~~~L~~L~l~~~-~~~~l~-~-~~~~l~~L~ 117 (293)
++.|.+.||...+.-+. .-.+++++.|++.+|..+++. .....+++++++..+ .++... . -..++++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 56666666654332221 113557777777777655432 223346666666663 233111 1 224566677
Q ss_pred EEEeccCccccc--ccccccccccccee--------------------------cccccccCCCCC--hhhhccccCCce
Q 039599 118 LLRINRCTRLKR--VSTSICKLKSLIAL--------------------------SAYGCLNLERFP--ESLEKMEHLNQI 167 (293)
Q Consensus 118 ~L~l~~~~~~~~--~~~~l~~l~~L~~L--------------------------~l~~~~~~~~~~--~~~~~l~~L~~L 167 (293)
+++++.|.-... +-....++..++++ ++..|...+.-. ..-..+..|+.+
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l 299 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL 299 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence 777666542221 00111123333333 333332221110 011234566777
Q ss_pred ecCCCcc-cccCCCcc-cccccCceecCCCCccccc-----cccCccccceecccCCCccCCCCcCCCCccCcccccCCc
Q 039599 168 NLGRTTI-TEQRPSSF-ENVKGLETLGFSELDNLSD-----NIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGL 240 (293)
Q Consensus 168 ~l~~n~~-~~~~~~~~-~~~~~L~~L~l~~~~~l~~-----~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~ 240 (293)
..+++.. ++.....+ .+..+|+.+.+.+++.+.+ --.+++.|+.+++.++....... +.+ .-.++
T Consensus 300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t----L~s----ls~~C 371 (483)
T KOG4341|consen 300 CYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT----LAS----LSRNC 371 (483)
T ss_pred cccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh----Hhh----hccCC
Confidence 7766543 11111122 3567788888877733322 22356677777777665433211 111 13478
Q ss_pred cccceeecCCc-cCCcC-----CcccCCCCCCcEEeccCCcCCC--CchhHhhcccCCCC
Q 039599 241 SLLYWLHLNNC-ALTSI-----PQEIGYLSSLEWLHLRGNNLEG--LPASIKQISRLESL 292 (293)
Q Consensus 241 ~~L~~L~l~~n-~i~~l-----~~~~~~~~~L~~L~l~~n~l~~--~p~~l~~l~~L~~l 292 (293)
+.|+.+.++.| .|++- ...-..+..|+.+.+++++... .-..+..+++|+.+
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri 431 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERI 431 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccccee
Confidence 88999999988 45552 2233567889999999997764 33446667777654
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.79 E-value=9.1e-06 Score=75.72 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=33.0
Q ss_pred CccEEecccccc--cccCccc-cCCCCCCEEEeccCcccc-ccccccccccccceecccccccCCCCChhhhccccCCce
Q 039599 92 NITRLYLDETAI--EEVPSSI-KCLTNLKLLRINRCTRLK-RVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQI 167 (293)
Q Consensus 92 ~L~~L~l~~~~~--~~l~~~~-~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 167 (293)
+|++|+++|... ...|..+ .-+|+|+.|.+.+-.... ++.....++++|..||++++.+.. + .+++.+++|++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHH
Confidence 455555544332 1223333 224555555555422211 111222244555555555543321 1 344455555555
Q ss_pred ecCCCcc
Q 039599 168 NLGRTTI 174 (293)
Q Consensus 168 ~l~~n~~ 174 (293)
.+.+-.+
T Consensus 201 ~mrnLe~ 207 (699)
T KOG3665|consen 201 SMRNLEF 207 (699)
T ss_pred hccCCCC
Confidence 4444333
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.76 E-value=8.1e-06 Score=76.06 Aligned_cols=107 Identities=20% Similarity=0.231 Sum_probs=57.3
Q ss_pred CCCCEEEeccCccccc-cccccc-cccccceecccccccC-CCCChhhhccccCCceecCCCcccccCCCcccccccCce
Q 039599 114 TNLKLLRINRCTRLKR-VSTSIC-KLKSLIALSAYGCLNL-ERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLET 190 (293)
Q Consensus 114 ~~L~~L~l~~~~~~~~-~~~~l~-~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 190 (293)
.+|++|+++|...... -+..++ .+|.|+.|.+.+-.+. +.+-.....+++|..||++++.++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4677777776443221 122222 4677777777664332 22233345667777777777766432 44566677777
Q ss_pred ecCCCC--c--cccccccCccccceecccCCCccCC
Q 039599 191 LGFSEL--D--NLSDNIGNFKSFEYMGAHGSAISQL 222 (293)
Q Consensus 191 L~l~~~--~--~l~~~~~~l~~L~~L~l~~~~~~~~ 222 (293)
|.+.+- . .--..+..+++|+.|+++.......
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~ 235 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDD 235 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccc
Confidence 666543 1 1112445566666666665554433
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=1e-05 Score=66.01 Aligned_cols=188 Identities=14% Similarity=0.104 Sum_probs=96.0
Q ss_pred EEecccccccccCc--cc-cCCCCCCEEEeccCcccc--ccccccccccccceecccccccCCCCChhhhccccCCceec
Q 039599 95 RLYLDETAIEEVPS--SI-KCLTNLKLLRINRCTRLK--RVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINL 169 (293)
Q Consensus 95 ~L~l~~~~~~~l~~--~~-~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 169 (293)
-+.+.++.|...-. .| ..++.++.+++.+|.+.. ++...+.++|.|+.|+++.|.+...+...-....+|++|-+
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL 128 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence 34455555543322 12 345566777777776544 23333456777777777777655433221134456667766
Q ss_pred CCCcccccCC-CcccccccCceecCCCC---ccc--cccccC-ccccceecccCCCccCCCCcCCCCccCcccccCCccc
Q 039599 170 GRTTITEQRP-SSFENVKGLETLGFSEL---DNL--SDNIGN-FKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSL 242 (293)
Q Consensus 170 ~~n~~~~~~~-~~~~~~~~L~~L~l~~~---~~l--~~~~~~-l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 242 (293)
.|..+.=... ..+..++.+++++++.| +.. .++... -+.+++++..+|....+... ...-+-.|+
T Consensus 129 NgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~--------~~l~r~Fpn 200 (418)
T KOG2982|consen 129 NGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNK--------NKLSRIFPN 200 (418)
T ss_pred cCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHH--------HhHHhhccc
Confidence 6655521111 12334555556655554 000 001111 12334444444432222000 001234577
Q ss_pred cceeecCCccCCcC--CcccCCCCCCcEEeccCCcCCC--CchhHhhcccCC
Q 039599 243 LYWLHLNNCALTSI--PQEIGYLSSLEWLHLRGNNLEG--LPASIKQISRLE 290 (293)
Q Consensus 243 L~~L~l~~n~i~~l--~~~~~~~~~L~~L~l~~n~l~~--~p~~l~~l~~L~ 290 (293)
+..+.+-.|.+.+. ......+|.+..|+|+.|++.+ --+.+..++.|+
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~ 252 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLV 252 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhh
Confidence 88888888888773 3346678888899999998875 223455555443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.67 E-value=4e-05 Score=59.15 Aligned_cols=20 Identities=5% Similarity=0.218 Sum_probs=9.5
Q ss_pred ccCccccceecccCCCccCC
Q 039599 203 IGNFKSFEYMGAHGSAISQL 222 (293)
Q Consensus 203 ~~~l~~L~~L~l~~~~~~~~ 222 (293)
+..++.|.+|.++.|.+..+
T Consensus 60 lp~l~rL~tLll~nNrIt~I 79 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRI 79 (233)
T ss_pred CCCccccceEEecCCcceee
Confidence 33444444445555554444
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.61 E-value=5.6e-06 Score=59.84 Aligned_cols=100 Identities=12% Similarity=0.150 Sum_probs=55.1
Q ss_pred ceEEeecCCcCCcccCC------CCCCccEEecccccccccCcccc-CCCCCCEEEeccCccccccccccccccccceec
Q 039599 72 PVTIDFTSCINLTDFPH------ISGNITRLYLDETAIEEVPSSIK-CLTNLKLLRINRCTRLKRVSTSICKLKSLIALS 144 (293)
Q Consensus 72 L~~L~l~~~~~~~~~~~------~~~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 144 (293)
+-.++++.|++ ..+++ ....|+..++++|.+..+|+.|. .++.++.|++++|.+. .+|.++..++.|+.|+
T Consensus 29 ~h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchh-hHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 33556666652 22221 12245555777777776666553 3446666666665533 3555566666666666
Q ss_pred ccccccCCCCChhhhccccCCceecCCCcc
Q 039599 145 AYGCLNLERFPESLEKMEHLNQINLGRTTI 174 (293)
Q Consensus 145 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 174 (293)
++.|.+. ..|+.+..+.++-.|+..+|..
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence 6666443 3344444455555665555554
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.53 E-value=0.00018 Score=55.62 Aligned_cols=83 Identities=18% Similarity=0.154 Sum_probs=34.5
Q ss_pred CCCCCCEEEeccCccccccccccccccccceecccccccCC--CCChhhhccccCCceecCCCcccccCC---Ccccccc
Q 039599 112 CLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLE--RFPESLEKMEHLNQINLGRTTITEQRP---SSFENVK 186 (293)
Q Consensus 112 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~ 186 (293)
.++.|.+|.+.+|.++...|.--..+++|+.|.+.+|.+.. .+ +-+..+++|++|.+-+|.++..-- ..+..++
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp 140 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP 140 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccceeeecCCchhcccCceeEEEEecC
Confidence 34444444444444433333222233444444444443321 11 123444555555555554432111 1234555
Q ss_pred cCceecCCC
Q 039599 187 GLETLGFSE 195 (293)
Q Consensus 187 ~L~~L~l~~ 195 (293)
+|++|+...
T Consensus 141 ~l~~LDF~k 149 (233)
T KOG1644|consen 141 SLRTLDFQK 149 (233)
T ss_pred cceEeehhh
Confidence 555555544
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.91 E-value=0.00046 Score=55.46 Aligned_cols=87 Identities=22% Similarity=0.313 Sum_probs=39.9
Q ss_pred hhccccCCceecCCCcccccCCCcccccccCceecCCCC-----ccccccccCccccceecccCCCccCCCCcCCCCccC
Q 039599 158 LEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL-----DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPL 232 (293)
Q Consensus 158 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-----~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l 232 (293)
...+..|+.+++.+..++.. ..+-.+++|++|.+++| ..+.....++++|+++++++|++..+..+.
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~------ 110 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR------ 110 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc------
Confidence 33444455555555444221 12334455666666555 122222334456666666666554331111
Q ss_pred cccccCCccccceeecCCccCCc
Q 039599 233 SASLLSGLSLLYWLHLNNCALTS 255 (293)
Q Consensus 233 ~~~~~~~~~~L~~L~l~~n~i~~ 255 (293)
.+..+++|..|++.+|..+.
T Consensus 111 ---pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 111 ---PLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred ---hhhhhcchhhhhcccCCccc
Confidence 13344555566666664443
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.00018 Score=58.43 Aligned_cols=98 Identities=12% Similarity=0.122 Sum_probs=70.1
Q ss_pred CCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCC--hhhhccccCCcee
Q 039599 91 GNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFP--ESLEKMEHLNQIN 168 (293)
Q Consensus 91 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~ 168 (293)
.+.++|+.-+++++.+. ....|+.|++|.++-|.+....| +..+++|++|++..|.+. .+. ..+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHh
Confidence 35667777777776553 24578899999999887765433 668889999999998554 332 3467888999999
Q ss_pred cCCCcccccCCC-----cccccccCceec
Q 039599 169 LGRTTITEQRPS-----SFENVKGLETLG 192 (293)
Q Consensus 169 l~~n~~~~~~~~-----~~~~~~~L~~L~ 192 (293)
+..|.-.+..+. .+.-+++|+.|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 998887665553 244567887775
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.67 E-value=0.00045 Score=33.41 Aligned_cols=18 Identities=56% Similarity=0.983 Sum_probs=8.8
Q ss_pred CcEEeccCCcCCCCchhH
Q 039599 266 LEWLHLRGNNLEGLPASI 283 (293)
Q Consensus 266 L~~L~l~~n~l~~~p~~l 283 (293)
|++||+++|+++.+|+.+
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 445555555555444443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.00012 Score=59.49 Aligned_cols=77 Identities=25% Similarity=0.267 Sum_probs=46.4
Q ss_pred CccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCC--cccCCCCCCcEEeccCCcCCC-C--
Q 039599 205 NFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIP--QEIGYLSSLEWLHLRGNNLEG-L-- 279 (293)
Q Consensus 205 ~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~--~~~~~~~~L~~L~l~~n~l~~-~-- 279 (293)
+++.|+.|.++-|.++++.. +..|..|++|+|.-|.|.++. ..+.++|+|+.|.|..|.-.+ -
T Consensus 39 kMp~lEVLsLSvNkIssL~p------------l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAP------------LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQ 106 (388)
T ss_pred hcccceeEEeeccccccchh------------HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccch
Confidence 34445555555566555522 346677777777777776643 235677777777777776543 1
Q ss_pred ---chhHhhcccCCCCC
Q 039599 280 ---PASIKQISRLESLD 293 (293)
Q Consensus 280 ---p~~l~~l~~L~~ld 293 (293)
-..+.-+|+|++||
T Consensus 107 nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 107 NYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHHHHHHHHcccchhcc
Confidence 12355577777765
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.43 E-value=0.00034 Score=63.13 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=14.6
Q ss_pred CCCCCEEEeccCccccc--cccccccccccceecccc
Q 039599 113 LTNLKLLRINRCTRLKR--VSTSICKLKSLIALSAYG 147 (293)
Q Consensus 113 l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~ 147 (293)
++.|+.+.+.++..... .......+++|++|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 34444454444432222 112233444555555544
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.42 E-value=0.0013 Score=31.79 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=16.1
Q ss_pred ccceeecCCccCCcCCcccCC
Q 039599 242 LLYWLHLNNCALTSIPQEIGY 262 (293)
Q Consensus 242 ~L~~L~l~~n~i~~l~~~~~~ 262 (293)
+|++|++++|.++.+|.+++.
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 478888888888888876554
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.39 E-value=0.0023 Score=51.50 Aligned_cols=102 Identities=17% Similarity=0.155 Sum_probs=65.3
Q ss_pred ccccCceecCCCCc-cccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCC--ccc
Q 039599 184 NVKGLETLGFSELD-NLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIP--QEI 260 (293)
Q Consensus 184 ~~~~L~~L~l~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~--~~~ 260 (293)
....|+.+++...+ .-...+..+++|++|.++.|....... +.. ....+|+|+++++++|+|..+. ..+
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~----l~v----l~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGG----LEV----LAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCccccccc----cee----hhhhCCceeEEeecCCccccccccchh
Confidence 34556666655541 122245678899999999984332211 000 1335599999999999887622 125
Q ss_pred CCCCCCcEEeccCCcCCCC----chhHhhcccCCCCC
Q 039599 261 GYLSSLEWLHLRGNNLEGL----PASIKQISRLESLD 293 (293)
Q Consensus 261 ~~~~~L~~L~l~~n~l~~~----p~~l~~l~~L~~ld 293 (293)
..+++|..|++.+|..+.+ ...+.-+++|+++|
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 6688899999999987752 23355578888775
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.39 E-value=0.011 Score=42.85 Aligned_cols=14 Identities=14% Similarity=0.188 Sum_probs=5.4
Q ss_pred cccCCCCCCEEEec
Q 039599 109 SIKCLTNLKLLRIN 122 (293)
Q Consensus 109 ~~~~l~~L~~L~l~ 122 (293)
+|.++.+|+.+.+.
T Consensus 7 ~F~~~~~l~~i~~~ 20 (129)
T PF13306_consen 7 AFYNCSNLESITFP 20 (129)
T ss_dssp TTTT-TT--EEEET
T ss_pred HHhCCCCCCEEEEC
Confidence 34445555555554
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.21 E-value=0.013 Score=42.62 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=21.8
Q ss_pred cccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCC
Q 039599 109 SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR 171 (293)
Q Consensus 109 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 171 (293)
.|.++++++.+.+..+ ........+.+++.++.+.+..+ ....-...+..+++++.+.+..
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN-LKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST-T-EE-TTTTTT-TTECEEEETT
T ss_pred hccccccccccccccc-ccccceeeeeccccccccccccc-ccccccccccccccccccccCc
Confidence 3444555555555442 22211223344444555555331 1111122344455555555543
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.14 E-value=0.0031 Score=28.28 Aligned_cols=16 Identities=44% Similarity=0.634 Sum_probs=6.6
Q ss_pred CCcEEeccCCcCCCCc
Q 039599 265 SLEWLHLRGNNLEGLP 280 (293)
Q Consensus 265 ~L~~L~l~~n~l~~~p 280 (293)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.46 E-value=0.00012 Score=65.51 Aligned_cols=178 Identities=22% Similarity=0.238 Sum_probs=88.8
Q ss_pred ccEEeccccccc-----ccCccccCCCCCCEEEeccCcccccccc----ccccc-cccceecccccccCC----CCChhh
Q 039599 93 ITRLYLDETAIE-----EVPSSIKCLTNLKLLRINRCTRLKRVST----SICKL-KSLIALSAYGCLNLE----RFPESL 158 (293)
Q Consensus 93 L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l-~~L~~L~l~~~~~~~----~~~~~~ 158 (293)
+..+.+.+|.+. .+-..+...++|..|++++|.+...-.. .+... +.+++|.+..|.... .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 444455555443 2223344555666666666655432111 11122 445556666654442 233444
Q ss_pred hccccCCceecCCCcccc----cCCCc----ccccccCceecCCCC-------ccccccccCccc-cceecccCCCccCC
Q 039599 159 EKMEHLNQINLGRTTITE----QRPSS----FENVKGLETLGFSEL-------DNLSDNIGNFKS-FEYMGAHGSAISQL 222 (293)
Q Consensus 159 ~~l~~L~~L~l~~n~~~~----~~~~~----~~~~~~L~~L~l~~~-------~~l~~~~~~l~~-L~~L~l~~~~~~~~ 222 (293)
.....++.++++.|.+.. .++.. +....++++|.+.++ ..+...+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 455566666666665521 11111 223455666666655 122223334444 55566666666543
Q ss_pred -C-CcCCCCccCcccccCCc-cccceeecCCccCCc-----CCcccCCCCCCcEEeccCCcCCC
Q 039599 223 -P-SLSSGLVPLSASLLSGL-SLLYWLHLNNCALTS-----IPQEIGYLSSLEWLHLRGNNLEG 278 (293)
Q Consensus 223 -~-~l~~~l~~l~~~~~~~~-~~L~~L~l~~n~i~~-----l~~~~~~~~~L~~L~l~~n~l~~ 278 (293)
- .+.+ .+..+ +.+++++++.|.|++ +...+..++.++.+.++.|++..
T Consensus 249 g~~~L~~--------~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLP--------CLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHH--------HhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 0 0111 12333 566777777777765 33445566777777777777663
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.43 E-value=0.045 Score=27.38 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=15.3
Q ss_pred CCCCcEEeccCCcCCCCchhH
Q 039599 263 LSSLEWLHLRGNNLEGLPASI 283 (293)
Q Consensus 263 ~~~L~~L~l~~n~l~~~p~~l 283 (293)
+++|+.|++++|+++.+|+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356788888888888777653
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.43 E-value=0.045 Score=27.38 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=15.3
Q ss_pred CCCCcEEeccCCcCCCCchhH
Q 039599 263 LSSLEWLHLRGNNLEGLPASI 283 (293)
Q Consensus 263 ~~~L~~L~l~~n~l~~~p~~l 283 (293)
+++|+.|++++|+++.+|+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356788888888888777653
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.99 E-value=0.014 Score=52.52 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=17.5
Q ss_pred ccccceecccccccCCC--CChhhhccccCCceecCC
Q 039599 137 LKSLIALSAYGCLNLER--FPESLEKMEHLNQINLGR 171 (293)
Q Consensus 137 l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~ 171 (293)
.+.|+.+.+.++..... +......++.|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 45555555555543332 223344555566666554
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.77 E-value=0.00066 Score=60.80 Aligned_cols=158 Identities=19% Similarity=0.146 Sum_probs=101.3
Q ss_pred CCCEEEeccCccccccc----cccccccccceecccccccCCCC----Chhhhcc-ccCCceecCCCcccccCC----Cc
Q 039599 115 NLKLLRINRCTRLKRVS----TSICKLKSLIALSAYGCLNLERF----PESLEKM-EHLNQINLGRTTITEQRP----SS 181 (293)
Q Consensus 115 ~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~----~~~~~~l-~~L~~L~l~~n~~~~~~~----~~ 181 (293)
.+..+.+.+|.+..... ..+...+.|+.|++++|.+...- .+.+... ..+++|++..|.++.... +.
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 37778888887665433 34556788999999998776321 2222332 467888888888865433 33
Q ss_pred ccccccCceecCCCCc-----------cccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccc-cceeecC
Q 039599 182 FENVKGLETLGFSELD-----------NLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSL-LYWLHLN 249 (293)
Q Consensus 182 ~~~~~~L~~L~l~~~~-----------~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~-L~~L~l~ 249 (293)
+.....++.+++..|. .++..+....+++++++++|.++... ...++. .+...+. +.++++.
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~-----c~~l~~-~l~~~~~~~~el~l~ 241 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSS-----CALLDE-VLASGESLLRELDLA 241 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHH-----HHHHHH-HHhccchhhHHHHHH
Confidence 4557788888888871 11222335778899999988876431 111111 1223333 6679999
Q ss_pred CccCCc-----CCcccCCC-CCCcEEeccCCcCCC
Q 039599 250 NCALTS-----IPQEIGYL-SSLEWLHLRGNNLEG 278 (293)
Q Consensus 250 ~n~i~~-----l~~~~~~~-~~L~~L~l~~n~l~~ 278 (293)
.|.+.+ +...+..+ +.++.++++.|.+++
T Consensus 242 ~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~ 276 (478)
T KOG4308|consen 242 SNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITE 276 (478)
T ss_pred hcCcchHHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence 998875 33345556 778999999999985
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.62 E-value=0.03 Score=43.66 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=15.2
Q ss_pred CCEEEeccCccccccccccccccccceecccccc
Q 039599 116 LKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL 149 (293)
Q Consensus 116 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 149 (293)
++.++.+++.+..+--+.+.+++.++.|.+.+|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 3444444444433333334444455555555543
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=90.85 E-value=0.16 Score=25.42 Aligned_cols=18 Identities=39% Similarity=0.577 Sum_probs=14.2
Q ss_pred CCCcEEeccCCcCCCCch
Q 039599 264 SSLEWLHLRGNNLEGLPA 281 (293)
Q Consensus 264 ~~L~~L~l~~n~l~~~p~ 281 (293)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467888888888888876
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.35 E-value=0.16 Score=24.79 Aligned_cols=14 Identities=36% Similarity=0.506 Sum_probs=6.9
Q ss_pred CCCcEEeccCCcCC
Q 039599 264 SSLEWLHLRGNNLE 277 (293)
Q Consensus 264 ~~L~~L~l~~n~l~ 277 (293)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45566666666554
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.19 E-value=0.041 Score=43.98 Aligned_cols=84 Identities=11% Similarity=0.124 Sum_probs=46.4
Q ss_pred ccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCc
Q 039599 110 IKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLE 189 (293)
Q Consensus 110 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 189 (293)
+..+...+.||++.|.. ......++.++.+..++++.|+ ...+|+.+.+...+..++...|.. +..|.++.+.++++
T Consensus 38 i~~~kr~tvld~~s~r~-vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRL-VNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNNH-SQQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHH-HhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccch-hhCCccccccCCcc
Confidence 44445555666665442 2233444555566666666552 234555566666666666665555 45566666666666
Q ss_pred eecCCCC
Q 039599 190 TLGFSEL 196 (293)
Q Consensus 190 ~L~l~~~ 196 (293)
+++.-++
T Consensus 115 ~~e~k~~ 121 (326)
T KOG0473|consen 115 KNEQKKT 121 (326)
T ss_pred hhhhccC
Confidence 6666555
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.51 E-value=0.98 Score=22.64 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=12.6
Q ss_pred CCCCcEEeccCCcCCCC
Q 039599 263 LSSLEWLHLRGNNLEGL 279 (293)
Q Consensus 263 ~~~L~~L~l~~n~l~~~ 279 (293)
+.+|+.|++++|+|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35788888888888753
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.81 E-value=0.064 Score=42.91 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=35.1
Q ss_pred hhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCC
Q 039599 156 ESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLP 223 (293)
Q Consensus 156 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~ 223 (293)
..+....+.+.||++.|.+ -.+...|+.++.+..|+++.+ ..+|..+.....++.+....|..+..|
T Consensus 36 ~ei~~~kr~tvld~~s~r~-vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p 104 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRL-VNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQP 104 (326)
T ss_pred hhhhccceeeeehhhhhHH-HhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCC
Confidence 3455556666777776665 234445555566666666555 334444444444444444444444443
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.71 E-value=0.8 Score=35.94 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=40.4
Q ss_pred eEEEEeecCcccceeechhhccCCccccEEEEeccceeeecccceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCc
Q 039599 5 IESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLT 84 (293)
Q Consensus 5 ~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 84 (293)
|+.| |-++..+...+...+..++.++.|.+.+|.-..+.. +..+.. ..++|+.|++++|+.++
T Consensus 103 IeaV--DAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~-------------L~~l~~--~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 103 IEAV--DASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC-------------LERLGG--LAPSLQDLDLSGCPRIT 165 (221)
T ss_pred EEEE--ecCCchHHHHHHHHHhccchhhhheeccccchhhHH-------------HHHhcc--cccchheeeccCCCeec
Confidence 4555 777777777777777777777777777665433221 111111 23589999999998776
Q ss_pred c
Q 039599 85 D 85 (293)
Q Consensus 85 ~ 85 (293)
+
T Consensus 166 ~ 166 (221)
T KOG3864|consen 166 D 166 (221)
T ss_pred h
Confidence 5
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=76.22 E-value=2.4 Score=21.51 Aligned_cols=15 Identities=40% Similarity=0.428 Sum_probs=12.5
Q ss_pred CCCcEEeccCCcCCC
Q 039599 264 SSLEWLHLRGNNLEG 278 (293)
Q Consensus 264 ~~L~~L~l~~n~l~~ 278 (293)
++|+.|||++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 578999999999874
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=74.91 E-value=2 Score=21.23 Aligned_cols=15 Identities=27% Similarity=0.581 Sum_probs=10.4
Q ss_pred cCceEEeecCCcCCc
Q 039599 70 VSPVTIDFTSCINLT 84 (293)
Q Consensus 70 ~~L~~L~l~~~~~~~ 84 (293)
++|+.|++++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 567788888877444
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.68 E-value=4.1 Score=37.01 Aligned_cols=13 Identities=31% Similarity=0.202 Sum_probs=7.6
Q ss_pred cceeecCCccCCc
Q 039599 243 LYWLHLNNCALTS 255 (293)
Q Consensus 243 L~~L~l~~n~i~~ 255 (293)
|++|-+.||.+.+
T Consensus 272 Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 272 LEELVLEGNPLCT 284 (585)
T ss_pred HHHeeecCCcccc
Confidence 5666666665543
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.06 E-value=18 Score=33.13 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=14.8
Q ss_pred CccEEeccccccccc---CccccCCCCCCEEEeccC
Q 039599 92 NITRLYLDETAIEEV---PSSIKCLTNLKLLRINRC 124 (293)
Q Consensus 92 ~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~ 124 (293)
.+..+.+++|++-.+ ..--...|+|..|++++|
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 344455555544322 111233455555555555
No 89
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=23.44 E-value=42 Score=16.79 Aligned_cols=11 Identities=36% Similarity=0.697 Sum_probs=6.0
Q ss_pred HhhcccCCCCC
Q 039599 283 IKQISRLESLD 293 (293)
Q Consensus 283 l~~l~~L~~ld 293 (293)
+..+|+|+.||
T Consensus 9 i~~LPqL~~LD 19 (26)
T smart00446 9 IRLLPQLRKLD 19 (26)
T ss_pred HHHCCccceec
Confidence 44455666554
Done!