Query 039599
Match_columns 293
No_of_seqs 177 out of 2544
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 19:23:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039599.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039599hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.2E-31 4E-36 252.7 22.4 212 11-222 300-553 (768)
2 3rgz_A Protein brassinosteroid 100.0 5.8E-32 2E-36 254.7 20.0 234 49-293 396-710 (768)
3 3v47_A TOLL-like receptor 5B a 100.0 8E-31 2.7E-35 233.0 18.5 276 4-292 31-400 (455)
4 4eco_A Uncharacterized protein 100.0 2.2E-30 7.4E-35 239.1 17.2 242 49-292 208-541 (636)
5 3t6q_A CD180 antigen; protein- 100.0 3.5E-29 1.2E-33 230.1 21.3 273 9-293 258-553 (606)
6 2id5_A Lingo-1, leucine rich r 100.0 3.5E-29 1.2E-33 223.8 19.2 272 11-292 38-325 (477)
7 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.8E-29 3.3E-33 225.2 21.0 135 159-293 350-503 (562)
8 4fmz_A Internalin; leucine ric 100.0 2E-28 6.9E-33 210.1 21.5 275 5-293 46-339 (347)
9 2z7x_B TOLL-like receptor 1, v 100.0 6.6E-29 2.3E-33 224.3 18.7 135 159-293 321-474 (520)
10 1ogq_A PGIP-2, polygalacturona 100.0 1.2E-29 4.1E-34 214.7 12.9 232 48-292 51-296 (313)
11 4eco_A Uncharacterized protein 100.0 2.5E-29 8.4E-34 232.1 15.3 248 10-271 254-543 (636)
12 3vq2_A TLR4, TOLL-like recepto 100.0 2.7E-28 9.4E-33 224.1 20.4 255 24-292 280-550 (606)
13 3t6q_A CD180 antigen; protein- 100.0 2E-28 6.9E-33 225.0 19.4 285 5-292 35-430 (606)
14 4ecn_A Leucine-rich repeat pro 100.0 6.9E-29 2.4E-33 234.1 16.4 241 49-293 450-782 (876)
15 3vq2_A TLR4, TOLL-like recepto 100.0 7.9E-28 2.7E-32 221.1 21.2 124 4-129 33-168 (606)
16 4ecn_A Leucine-rich repeat pro 100.0 1.6E-28 5.5E-33 231.5 16.9 274 15-293 435-812 (876)
17 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-28 5.3E-33 223.2 15.6 134 159-293 331-503 (549)
18 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-28 3.6E-33 208.9 13.0 219 49-280 78-308 (313)
19 3v47_A TOLL-like receptor 5B a 100.0 4.6E-28 1.6E-32 215.2 17.5 259 11-280 60-412 (455)
20 4fmz_A Internalin; leucine ric 100.0 3.7E-27 1.3E-31 202.2 21.9 260 24-293 39-317 (347)
21 3o6n_A APL1; leucine-rich repe 100.0 9.2E-28 3.1E-32 209.3 18.3 252 11-279 51-333 (390)
22 2id5_A Lingo-1, leucine rich r 100.0 3E-27 1E-31 211.3 20.2 262 4-278 57-334 (477)
23 3j0a_A TOLL-like receptor 5; m 100.0 3.7E-27 1.3E-31 224.2 20.9 275 4-280 25-378 (844)
24 2z7x_B TOLL-like receptor 1, v 100.0 2.1E-27 7.2E-32 214.5 18.2 144 135-278 321-482 (520)
25 4fcg_A Uncharacterized protein 100.0 1.2E-27 4.2E-32 203.6 15.5 215 49-278 83-315 (328)
26 1o6v_A Internalin A; bacterial 100.0 1E-26 3.6E-31 207.2 21.2 190 93-292 179-380 (466)
27 3oja_B Anopheles plasmodium-re 99.9 4.3E-27 1.5E-31 215.7 18.5 252 11-279 57-339 (597)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.6E-27 2.3E-31 213.1 19.0 275 10-293 36-479 (562)
29 1xku_A Decorin; proteoglycan, 99.9 5E-26 1.7E-30 193.9 23.3 264 11-292 37-324 (330)
30 2ft3_A Biglycan; proteoglycan, 99.9 3.3E-26 1.1E-30 195.2 21.9 264 11-293 39-326 (332)
31 2z63_A TOLL-like receptor 4, v 99.9 3.3E-27 1.1E-31 215.4 16.0 284 4-292 29-426 (570)
32 1ziw_A TOLL-like receptor 3; i 99.9 3.6E-26 1.2E-30 212.8 23.1 176 116-291 383-588 (680)
33 3o6n_A APL1; leucine-rich repe 99.9 5.1E-26 1.7E-30 198.2 20.9 253 27-293 43-324 (390)
34 4fcg_A Uncharacterized protein 99.9 3.2E-26 1.1E-30 194.8 17.8 209 70-292 81-306 (328)
35 1ziw_A TOLL-like receptor 3; i 99.9 9.3E-26 3.2E-30 210.0 22.1 272 4-277 26-366 (680)
36 3bz5_A Internalin-J, INLJ; leu 99.9 2E-25 6.9E-30 198.0 22.4 200 4-223 43-249 (457)
37 1o6v_A Internalin A; bacterial 99.9 1.7E-25 5.8E-30 199.3 21.9 273 5-292 48-358 (466)
38 1xku_A Decorin; proteoglycan, 99.9 2.3E-25 8E-30 189.8 21.2 238 29-281 31-280 (330)
39 2ft3_A Biglycan; proteoglycan, 99.9 2.9E-25 9.8E-30 189.4 21.0 258 4-275 55-331 (332)
40 3oja_B Anopheles plasmodium-re 99.9 1.9E-25 6.5E-30 204.8 20.5 253 27-293 49-330 (597)
41 3j0a_A TOLL-like receptor 5; m 99.9 1.8E-25 6.2E-30 212.6 20.2 283 7-293 6-368 (844)
42 1jl5_A Outer protein YOPM; leu 99.9 6E-25 2.1E-29 194.8 22.0 253 11-286 97-382 (454)
43 2z66_A Variable lymphocyte rec 99.9 1.6E-25 5.6E-30 188.7 17.1 219 49-278 30-262 (306)
44 2z63_A TOLL-like receptor 4, v 99.9 5.4E-25 1.8E-29 200.7 20.8 254 11-278 263-532 (570)
45 1jl5_A Outer protein YOPM; leu 99.9 1.9E-24 6.6E-29 191.6 22.6 263 4-289 132-421 (454)
46 3bz5_A Internalin-J, INLJ; leu 99.9 3.8E-24 1.3E-28 189.8 23.2 249 11-280 70-355 (457)
47 1ozn_A Reticulon 4 receptor; N 99.9 1.1E-24 3.8E-29 181.8 18.1 216 50-278 14-239 (285)
48 1wwl_A Monocyte differentiatio 99.9 3.2E-27 1.1E-31 199.7 2.5 241 24-278 38-310 (312)
49 2z66_A Variable lymphocyte rec 99.9 9.6E-25 3.3E-29 184.0 16.7 228 51-293 11-254 (306)
50 2z81_A CD282 antigen, TOLL-lik 99.9 1.1E-24 3.6E-29 198.0 17.9 164 112-278 332-511 (549)
51 2z80_A TOLL-like receptor 2, v 99.9 2.5E-25 8.5E-30 191.3 12.3 253 29-281 31-318 (353)
52 4g8a_A TOLL-like receptor 4; l 99.9 7E-24 2.4E-28 195.4 21.1 121 5-128 54-187 (635)
53 3o53_A Protein LRIM1, AGAP0063 99.9 7.5E-26 2.6E-30 191.7 7.0 239 11-290 16-265 (317)
54 2z80_A TOLL-like receptor 2, v 99.9 8.1E-25 2.8E-29 188.1 13.5 214 30-255 53-315 (353)
55 3g06_A SSPH2 (leucine-rich rep 99.9 1.8E-23 6.3E-28 191.1 23.1 254 10-288 45-309 (622)
56 1ozn_A Reticulon 4 receptor; N 99.9 7.1E-24 2.4E-28 176.9 17.6 197 49-255 34-239 (285)
57 3zyi_A Leucine-rich repeat-con 99.9 1.7E-23 5.7E-28 185.8 20.3 233 32-277 57-303 (452)
58 3oja_A Leucine-rich immune mol 99.9 9.3E-25 3.2E-29 195.3 11.8 222 50-290 37-265 (487)
59 3zyj_A Leucine-rich repeat-con 99.9 1.3E-23 4.3E-28 185.9 18.9 230 49-292 45-284 (440)
60 3zyi_A Leucine-rich repeat-con 99.9 1.4E-23 4.8E-28 186.3 18.5 230 50-293 57-296 (452)
61 3zyj_A Leucine-rich repeat-con 99.9 2.3E-23 7.9E-28 184.3 19.0 234 32-277 46-292 (440)
62 3g06_A SSPH2 (leucine-rich rep 99.9 8.8E-23 3E-27 186.6 22.2 216 11-260 67-304 (622)
63 1wwl_A Monocyte differentiatio 99.9 7.5E-26 2.6E-30 191.3 1.3 229 49-293 45-302 (312)
64 3o53_A Protein LRIM1, AGAP0063 99.9 1.8E-24 6E-29 183.3 7.5 223 50-293 13-243 (317)
65 2o6q_A Variable lymphocyte rec 99.9 2E-22 6.7E-27 166.9 19.6 197 71-278 17-219 (270)
66 2z62_A TOLL-like receptor 4, v 99.9 2.9E-23 1E-27 172.4 14.0 206 61-278 20-238 (276)
67 3oja_A Leucine-rich immune mol 99.9 9.9E-24 3.4E-28 188.7 9.5 203 70-293 34-243 (487)
68 1p9a_G Platelet glycoprotein I 99.9 6.4E-22 2.2E-26 165.4 18.9 195 70-278 10-209 (290)
69 2z62_A TOLL-like receptor 4, v 99.9 7E-22 2.4E-26 164.0 18.4 198 48-255 29-238 (276)
70 2o6q_A Variable lymphocyte rec 99.9 9.4E-22 3.2E-26 162.8 16.9 191 91-293 16-211 (270)
71 1z7x_W Ribonuclease inhibitor; 99.9 5.5E-25 1.9E-29 195.7 -2.8 244 49-292 87-403 (461)
72 3rfs_A Internalin B, repeat mo 99.9 5.1E-22 1.8E-26 164.5 13.5 176 92-284 64-243 (272)
73 1h6u_A Internalin H; cell adhe 99.9 2.4E-21 8.2E-26 163.3 16.0 190 70-281 41-234 (308)
74 1z7x_W Ribonuclease inhibitor; 99.9 5.5E-25 1.9E-29 195.7 -7.4 264 5-278 87-412 (461)
75 2xwt_C Thyrotropin receptor; s 99.9 2.8E-21 9.5E-26 157.0 15.0 188 71-273 32-235 (239)
76 2xwt_C Thyrotropin receptor; s 99.9 8E-22 2.7E-26 160.2 11.6 194 83-291 23-230 (239)
77 1p9a_G Platelet glycoprotein I 99.9 3.5E-21 1.2E-25 160.9 15.7 188 90-292 9-200 (290)
78 1h6u_A Internalin H; cell adhe 99.9 4.6E-21 1.6E-25 161.6 15.6 182 90-293 40-223 (308)
79 3m19_A Variable lymphocyte rec 99.9 1.3E-20 4.5E-25 154.2 16.7 176 71-278 15-193 (251)
80 4glp_A Monocyte differentiatio 99.9 7.1E-21 2.4E-25 160.6 15.0 193 71-278 92-308 (310)
81 3rfs_A Internalin B, repeat mo 99.9 2.9E-20 9.8E-25 154.0 17.8 176 90-278 40-219 (272)
82 4glp_A Monocyte differentiatio 99.8 6.4E-21 2.2E-25 160.9 11.2 212 70-293 64-300 (310)
83 4g8a_A TOLL-like receptor 4; l 99.8 1.4E-19 4.9E-24 166.6 21.0 242 25-277 324-580 (635)
84 3cvr_A Invasion plasmid antige 99.8 4.1E-20 1.4E-24 167.2 16.3 192 71-288 60-255 (571)
85 2ca6_A RAN GTPase-activating p 99.8 4.3E-22 1.5E-26 173.1 2.3 236 23-280 26-319 (386)
86 3m19_A Variable lymphocyte rec 99.8 1.7E-19 5.9E-24 147.5 16.6 172 49-222 16-194 (251)
87 2ast_B S-phase kinase-associat 99.8 2E-21 6.7E-26 165.8 3.4 242 30-284 48-314 (336)
88 1h6t_A Internalin B; cell adhe 99.8 3.1E-19 1E-23 149.2 14.7 144 70-222 46-193 (291)
89 2ca6_A RAN GTPase-activating p 99.8 1.7E-21 5.9E-26 169.4 -0.2 214 69-293 31-309 (386)
90 3goz_A Leucine-rich repeat-con 99.8 2.1E-21 7.3E-26 167.3 -0.2 248 9-278 2-298 (362)
91 2ast_B S-phase kinase-associat 99.8 3.4E-21 1.2E-25 164.3 1.0 218 49-278 49-285 (336)
92 4ay9_X Follicle-stimulating ho 99.8 2.6E-19 9E-24 153.5 12.8 226 51-292 13-251 (350)
93 2o6s_A Variable lymphocyte rec 99.8 1.1E-18 3.6E-23 138.7 14.2 174 74-265 11-190 (208)
94 3goz_A Leucine-rich repeat-con 99.8 2.6E-21 8.9E-26 166.8 -1.1 220 52-279 3-268 (362)
95 3cvr_A Invasion plasmid antige 99.8 3.5E-19 1.2E-23 161.1 12.1 182 49-262 61-252 (571)
96 2o6s_A Variable lymphocyte rec 99.8 5.7E-19 1.9E-23 140.3 11.9 178 93-288 9-190 (208)
97 4ay9_X Follicle-stimulating ho 99.8 7.3E-18 2.5E-22 144.6 16.2 228 32-274 12-256 (350)
98 4ezg_A Putative uncharacterize 99.8 1.3E-18 4.5E-23 137.0 10.4 151 111-278 41-195 (197)
99 1m9s_A Internalin B; cell inva 99.8 4.5E-18 1.5E-22 155.3 14.5 143 71-222 44-190 (605)
100 1h6t_A Internalin B; cell adhe 99.8 2.9E-18 9.9E-23 143.3 11.5 170 90-280 45-216 (291)
101 4ezg_A Putative uncharacterize 99.8 2.8E-18 9.5E-23 135.1 10.6 148 92-255 45-195 (197)
102 1dce_A Protein (RAB geranylger 99.7 1.9E-20 6.3E-25 170.0 -4.0 189 90-293 348-566 (567)
103 1xeu_A Internalin C; cellular 99.7 5.1E-18 1.7E-22 139.7 9.3 142 71-222 20-165 (263)
104 3ogk_B Coronatine-insensitive 99.7 3.6E-19 1.2E-23 163.0 2.4 285 5-292 140-518 (592)
105 2v70_A SLIT-2, SLIT homolog 2 99.7 4.1E-17 1.4E-21 130.6 13.4 149 73-222 14-168 (220)
106 2xot_A Amphoterin-induced prot 99.7 1.5E-17 5.1E-22 143.2 11.1 175 73-277 21-202 (361)
107 3ogk_B Coronatine-insensitive 99.7 1.2E-19 4E-24 166.2 -2.7 265 27-292 110-468 (592)
108 3e6j_A Variable lymphocyte rec 99.7 8.2E-17 2.8E-21 129.7 13.9 123 72-196 21-145 (229)
109 2v9t_B SLIT homolog 2 protein 99.7 8.4E-17 2.9E-21 128.8 13.4 148 73-221 14-166 (220)
110 2xot_A Amphoterin-induced prot 99.7 2.3E-17 8E-22 142.0 10.5 171 50-222 21-204 (361)
111 2v9t_B SLIT homolog 2 protein 99.7 7.4E-17 2.5E-21 129.1 12.5 128 93-222 13-143 (220)
112 1m9s_A Internalin B; cell inva 99.7 1.3E-16 4.4E-21 145.7 13.9 166 49-223 45-213 (605)
113 2v70_A SLIT-2, SLIT homolog 2 99.7 1.6E-16 5.6E-21 127.1 12.3 129 92-222 12-144 (220)
114 2p1m_B Transport inhibitor res 99.7 2.3E-19 8E-24 164.2 -6.3 54 240-293 455-512 (594)
115 3e6j_A Variable lymphocyte rec 99.7 6.2E-16 2.1E-20 124.6 14.6 151 92-254 20-172 (229)
116 1xeu_A Internalin C; cellular 99.7 2.6E-17 8.9E-22 135.4 5.8 169 91-281 19-189 (263)
117 2ell_A Acidic leucine-rich nuc 99.7 2.1E-16 7.1E-21 121.1 7.9 137 114-282 24-165 (168)
118 2ell_A Acidic leucine-rich nuc 99.6 1.7E-15 5.8E-20 116.0 10.6 104 91-196 24-130 (168)
119 2p1m_B Transport inhibitor res 99.6 2.4E-18 8.2E-23 157.5 -6.5 40 238-277 478-519 (594)
120 4b8c_D Glucose-repressible alc 99.6 2.7E-16 9.2E-21 146.8 6.2 129 91-222 224-356 (727)
121 1w8a_A SLIT protein; signaling 99.6 3.6E-15 1.2E-19 116.7 10.8 123 73-196 11-136 (192)
122 2wfh_A SLIT homolog 2 protein 99.6 8.1E-15 2.8E-19 114.8 12.3 123 73-196 13-136 (193)
123 2je0_A Acidic leucine-rich nuc 99.6 9.3E-16 3.2E-20 115.0 6.3 123 137-293 16-146 (149)
124 1dce_A Protein (RAB geranylger 99.6 3.1E-17 1E-21 148.9 -3.9 168 111-293 346-539 (567)
125 1w8a_A SLIT protein; signaling 99.6 1.5E-14 5.1E-19 113.2 11.3 129 92-222 9-141 (192)
126 4b8c_D Glucose-repressible alc 99.6 5.1E-16 1.8E-20 144.9 3.2 184 70-274 173-369 (727)
127 1ds9_A Outer arm dynein; leuci 99.6 3.4E-17 1.2E-21 129.0 -4.8 84 133-220 43-128 (198)
128 2je0_A Acidic leucine-rich nuc 99.6 7.4E-15 2.5E-19 110.0 7.8 122 71-193 18-147 (149)
129 1a9n_A U2A', U2A'; complex (nu 99.5 1.9E-14 6.5E-19 111.0 7.2 133 133-278 14-154 (176)
130 2o6r_A Variable lymphocyte rec 99.5 2.2E-13 7.5E-18 105.0 12.3 123 73-196 10-134 (177)
131 2wfh_A SLIT homolog 2 protein 99.5 1.7E-13 5.8E-18 107.2 11.6 127 93-222 12-141 (193)
132 2o6r_A Variable lymphocyte rec 99.5 3.9E-13 1.3E-17 103.6 11.9 128 92-221 8-138 (177)
133 1a9n_A U2A', U2A'; complex (nu 99.5 1.7E-13 5.7E-18 105.6 8.4 125 68-196 17-150 (176)
134 3sb4_A Hypothetical leucine ri 99.4 5.4E-13 1.8E-17 113.2 10.8 96 185-292 225-326 (329)
135 3sb4_A Hypothetical leucine ri 99.4 5.1E-13 1.7E-17 113.4 8.8 230 28-271 24-328 (329)
136 1ds9_A Outer arm dynein; leuci 99.4 1.3E-15 4.3E-20 119.9 -7.4 88 104-196 38-125 (198)
137 3g39_A Variable lymphocyte rec 99.3 4E-12 1.4E-16 97.3 9.7 103 72-175 11-115 (170)
138 3g39_A Variable lymphocyte rec 99.3 8.4E-12 2.9E-16 95.5 10.2 103 92-196 10-112 (170)
139 2r9u_A Variable lymphocyte rec 99.3 7.6E-12 2.6E-16 96.1 9.8 101 73-174 15-117 (174)
140 2r9u_A Variable lymphocyte rec 99.3 2E-11 6.9E-16 93.7 10.3 103 92-196 13-115 (174)
141 4fdw_A Leucine rich hypothetic 99.3 2.1E-10 7.3E-15 99.6 17.8 140 70-214 180-330 (401)
142 3un9_A NLR family member X1; l 99.3 2.6E-13 8.8E-18 116.9 -2.1 157 91-255 72-253 (372)
143 4fdw_A Leucine rich hypothetic 99.2 1.2E-09 4E-14 95.0 16.1 171 92-279 181-360 (401)
144 3un9_A NLR family member X1; l 99.1 1.1E-11 3.7E-16 106.8 -0.0 132 91-222 101-254 (372)
145 2ifg_A High affinity nerve gro 99.1 4E-10 1.4E-14 96.1 9.0 100 74-175 12-116 (347)
146 2ifg_A High affinity nerve gro 98.9 5.1E-09 1.8E-13 89.2 8.1 101 94-196 11-113 (347)
147 4fs7_A Uncharacterized protein 98.7 5.8E-07 2E-11 77.9 17.1 41 16-57 58-104 (394)
148 2ra8_A Uncharacterized protein 98.7 1.9E-09 6.4E-14 92.2 0.5 38 240-277 278-320 (362)
149 2ra8_A Uncharacterized protein 98.6 1.5E-08 5.1E-13 86.6 3.3 81 185-275 251-341 (362)
150 4fs7_A Uncharacterized protein 98.6 1.5E-06 5E-11 75.3 15.0 162 112-291 228-392 (394)
151 4gt6_A Cell surface protein; l 98.5 1.7E-05 5.7E-10 68.6 19.4 106 157-275 260-368 (394)
152 4gt6_A Cell surface protein; l 98.4 9.6E-06 3.3E-10 70.1 16.2 129 133-276 260-390 (394)
153 1io0_A Tropomodulin; LRR prote 98.4 4.9E-08 1.7E-12 75.4 1.1 66 110-175 32-106 (185)
154 4h09_A Hypothetical leucine ri 98.4 0.00011 3.6E-09 63.1 21.7 105 157-273 235-342 (379)
155 1io0_A Tropomodulin; LRR prote 98.3 1.3E-07 4.6E-12 72.9 1.8 88 109-196 60-161 (185)
156 3rw6_A Nuclear RNA export fact 98.2 5.9E-07 2E-11 73.1 2.8 81 204-293 167-257 (267)
157 3e4g_A ATP synthase subunit S, 98.2 3.8E-07 1.3E-11 69.1 1.6 81 92-172 62-149 (176)
158 3rw6_A Nuclear RNA export fact 98.0 5.2E-06 1.8E-10 67.5 5.5 67 111-179 167-237 (267)
159 4h09_A Hypothetical leucine ri 98.0 0.001 3.4E-08 57.0 19.3 267 4-292 47-338 (379)
160 3e4g_A ATP synthase subunit S, 97.9 2.7E-06 9.1E-11 64.5 1.0 35 115-149 62-96 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00021 7.3E-09 55.1 1.6 14 113-126 69-82 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00035 1.2E-08 53.8 2.7 86 110-195 37-135 (197)
163 3rfe_A Platelet glycoprotein I 96.7 0.0034 1.2E-07 45.0 6.1 53 74-127 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.2 0.0092 3.1E-07 42.7 5.7 37 241-277 31-68 (130)
165 2lz0_A Uncharacterized protein 57.8 24 0.00084 23.2 5.3 44 103-147 8-52 (100)
166 2lz0_A Uncharacterized protein 54.1 19 0.00066 23.7 4.3 37 236-273 15-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-31 Score=252.66 Aligned_cols=212 Identities=17% Similarity=0.168 Sum_probs=138.0
Q ss_pred ecCcccceeechhhccCCccccEEEEeccceeee-c-c-c----ceEEEeccCCcccccCCCC-----------------
Q 039599 11 NLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVH-M-S-I----EEQLLDSKGCKILRSFPSN----------------- 66 (293)
Q Consensus 11 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~-~-~----~l~~L~l~~~~~~~~~~~~----------------- 66 (293)
++++|......+..|..+++|++|++++|.+... + . + .|++|++++|.+.+.+|..
T Consensus 300 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379 (768)
T ss_dssp ECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSE
T ss_pred ECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCC
Confidence 6666655555555566666666666666555411 1 1 1 1555555555544444433
Q ss_pred --------CC---CcCceEEeecCCcCCcccCCCC---CCccEEeccccccc-ccCccccCCCCCCEEEeccCccccccc
Q 039599 67 --------LH---FVSPVTIDFTSCINLTDFPHIS---GNITRLYLDETAIE-EVPSSIKCLTNLKLLRINRCTRLKRVS 131 (293)
Q Consensus 67 --------~~---~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~ 131 (293)
+. ..+|++|++++|.+.+.+|..+ .+|++|++++|.+. .+|..+..+++|++|++++|.+.+..|
T Consensus 380 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 459 (768)
T 3rgz_A 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459 (768)
T ss_dssp EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC
Confidence 32 2255666666665444444432 35666677777664 556666777777777777777666667
Q ss_pred cccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC---ccccccccCccc
Q 039599 132 TSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL---DNLSDNIGNFKS 208 (293)
Q Consensus 132 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~~~~~~l~~ 208 (293)
..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++| +.+|..+..+++
T Consensus 460 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 539 (768)
T 3rgz_A 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTT
T ss_pred HHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence 77777777777777777777777777777888888888888887777777777888888888877 467777778888
Q ss_pred cceecccCCCccCC
Q 039599 209 FEYMGAHGSAISQL 222 (293)
Q Consensus 209 L~~L~l~~~~~~~~ 222 (293)
|+.+++++|.+.+.
T Consensus 540 L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 540 LIWLDLNTNLFNGT 553 (768)
T ss_dssp CCEEECCSSEEESB
T ss_pred CCEEECCCCccCCc
Confidence 88888888877643
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.8e-32 Score=254.74 Aligned_cols=234 Identities=18% Similarity=0.304 Sum_probs=189.0
Q ss_pred eEEEeccCCcccccCCCCCCC-cCceEEeecCCcCCcccCCCC---CCccEEeccccccc-ccCccccCCCCCCEEEecc
Q 039599 49 EQLLDSKGCKILRSFPSNLHF-VSPVTIDFTSCINLTDFPHIS---GNITRLYLDETAIE-EVPSSIKCLTNLKLLRINR 123 (293)
Q Consensus 49 l~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~ 123 (293)
+++|++++|.+.+.+|..+.. ++|++|++++|.+.+.+|..+ .+|++|++++|.+. .+|..+..+++|++|++++
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 677777777777677776654 499999999998766777543 57889999999986 7788888999999999999
Q ss_pred CccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC---cccc
Q 039599 124 CTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL---DNLS 200 (293)
Q Consensus 124 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~ 200 (293)
|.+.+..|..+..+++|++|++++|.+.+.+|.++..+++|++|++++|.+++.+|..+..+++|+.|++++| +.+|
T Consensus 476 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 9988888888899999999999999888899999999999999999999998889989999999999999988 3444
Q ss_pred ccc----------------------------------------------------------------------cCccccc
Q 039599 201 DNI----------------------------------------------------------------------GNFKSFE 210 (293)
Q Consensus 201 ~~~----------------------------------------------------------------------~~l~~L~ 210 (293)
..+ ..++.|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 433 2345677
Q ss_pred eecccCCCccCC-CCcCCCCccCcccccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCCC-CchhHhhcc
Q 039599 211 YMGAHGSAISQL-PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLEG-LPASIKQIS 287 (293)
Q Consensus 211 ~L~l~~~~~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~-~p~~l~~l~ 287 (293)
.|++++|.+++. |. .++.++.|+.|++++|.+++ +|..++.+++|+.||+++|++++ +|..+..++
T Consensus 636 ~LdLs~N~l~g~ip~-----------~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPK-----------EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704 (768)
T ss_dssp EEECCSSCCBSCCCG-----------GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred EEECcCCcccccCCH-----------HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence 788888877765 54 35677778888888888875 78778888888888888888885 777787777
Q ss_pred cCCCCC
Q 039599 288 RLESLD 293 (293)
Q Consensus 288 ~L~~ld 293 (293)
+|+.||
T Consensus 705 ~L~~L~ 710 (768)
T 3rgz_A 705 MLTEID 710 (768)
T ss_dssp CCSEEE
T ss_pred CCCEEE
Confidence 777654
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=8e-31 Score=233.02 Aligned_cols=276 Identities=16% Similarity=0.183 Sum_probs=181.8
Q ss_pred ceEEEEeecCcccceeechhhccCCccccEEEEecccee--eec-ccc----eEEEeccCCcccccCCCCCCC-cCceEE
Q 039599 4 AIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEIS--VHM-SIE----EQLLDSKGCKILRSFPSNLHF-VSPVTI 75 (293)
Q Consensus 4 ~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~-~~~----l~~L~l~~~~~~~~~~~~~~~-~~L~~L 75 (293)
+++.+ |+++|....+.+..|..+++|++|++++|.+. .++ .+. |++|++++|.+.+..|..+.. .+|++|
T Consensus 31 ~l~~L--~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 31 HVNYV--DLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TCCEE--ECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred ccCEE--EecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 45555 99999998888889999999999999999774 222 222 999999999988777877764 499999
Q ss_pred eecCCcCCcccC-----CCCCCccEEeccccccccc-Ccc-ccCCCCCCEEEeccCccccccccccccc-----------
Q 039599 76 DFTSCINLTDFP-----HISGNITRLYLDETAIEEV-PSS-IKCLTNLKLLRINRCTRLKRVSTSICKL----------- 137 (293)
Q Consensus 76 ~l~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~l-~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l----------- 137 (293)
++++|.+.+.+| ..+.+|++|++++|.+..+ |.. +..+++|++|++++|.+.+..+..+..+
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 999999655333 2356899999999999877 444 7899999999999998776655544433
Q ss_pred -----------------------cccceecccccccCCCCChhhhc----------------------------------
Q 039599 138 -----------------------KSLIALSAYGCLNLERFPESLEK---------------------------------- 160 (293)
Q Consensus 138 -----------------------~~L~~L~l~~~~~~~~~~~~~~~---------------------------------- 160 (293)
++|++|++++|.+.+..+..+..
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 45677777766554333222211
Q ss_pred -----cccCCceecCCCcccccCCCcccccccCceecCCCC---ccccccccCccccceecccCCCccCC-CCcCCCCcc
Q 039599 161 -----MEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHGSAISQL-PSLSSGLVP 231 (293)
Q Consensus 161 -----l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~ 231 (293)
.++|++|++++|.+.+..+..+..+++|+.|++++| +..+..+..+++|++|++++|.+.++ |.
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------- 341 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR------- 341 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-------
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh-------
Confidence 135666666666665555556666666666666666 22344556666666666666666555 22
Q ss_pred CcccccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCCCCch-hHhhcccCCCC
Q 039599 232 LSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLEGLPA-SIKQISRLESL 292 (293)
Q Consensus 232 l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~~p~-~l~~l~~L~~l 292 (293)
.+..+++|++|++++|.+++ .|.++..+++|+.|++++|+++++|+ .+..+++|+.|
T Consensus 342 ----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 400 (455)
T 3v47_A 342 ----MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKI 400 (455)
T ss_dssp ----GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred ----HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEE
Confidence 13445555555555555555 24445555555555555555555443 23445555443
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=2.2e-30 Score=239.10 Aligned_cols=242 Identities=16% Similarity=0.205 Sum_probs=138.5
Q ss_pred eEEEeccCCccccc-----------------CCCCCC---CcCceEEeecCCcCCcccCCCCC---CccEEeccccc-cc
Q 039599 49 EQLLDSKGCKILRS-----------------FPSNLH---FVSPVTIDFTSCINLTDFPHISG---NITRLYLDETA-IE 104 (293)
Q Consensus 49 l~~L~l~~~~~~~~-----------------~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~-~~ 104 (293)
|++|++++|.+.+. +|..++ +.+|++|++++|.+.+.+|..+. +|++|++++|. +.
T Consensus 208 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~ 287 (636)
T 4eco_A 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287 (636)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC
T ss_pred CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc
Confidence 67777777765553 666655 33677777777766666665432 45555666665 43
Q ss_pred --ccCccccCC------CCCCEEEeccCcccccccc--ccccccccceecccccccCC----------------------
Q 039599 105 --EVPSSIKCL------TNLKLLRINRCTRLKRVST--SICKLKSLIALSAYGCLNLE---------------------- 152 (293)
Q Consensus 105 --~l~~~~~~l------~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~---------------------- 152 (293)
.+|..++.+ ++|++|++++|.+. .+|. .+..+++|++|++++|.+.+
T Consensus 288 ~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~ 366 (636)
T 4eco_A 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT 366 (636)
T ss_dssp HHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE
T ss_pred cccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc
Confidence 244444333 45555555554443 3444 44444444544444444443
Q ss_pred CCChhhhcccc-CCceecCCCcccccCCCcccccc--cCceecCCCC---cccccccc-------CccccceecccCCCc
Q 039599 153 RFPESLEKMEH-LNQINLGRTTITEQRPSSFENVK--GLETLGFSEL---DNLSDNIG-------NFKSFEYMGAHGSAI 219 (293)
Q Consensus 153 ~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~~---~~l~~~~~-------~l~~L~~L~l~~~~~ 219 (293)
.+|..+..+++ |++|++++|.++ .+|..+.... +|+.|++++| +..|..+. .+++|++|++++|.+
T Consensus 367 ~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l 445 (636)
T 4eco_A 367 EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445 (636)
T ss_dssp ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC
T ss_pred cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc
Confidence 44444555555 555555555554 4444443332 5556665555 22333444 455667777777766
Q ss_pred cCCCC-cC---CCCccCcccc----------cC-------CccccceeecCCccCCcCCcccC--CCCCCcEEeccCCcC
Q 039599 220 SQLPS-LS---SGLVPLSASL----------LS-------GLSLLYWLHLNNCALTSIPQEIG--YLSSLEWLHLRGNNL 276 (293)
Q Consensus 220 ~~~~~-l~---~~l~~l~~~~----------~~-------~~~~L~~L~l~~n~i~~l~~~~~--~~~~L~~L~l~~n~l 276 (293)
..+|. +. +.++.|+++. +. .+++|++|++++|.++.+|..+. .+++|+.|++++|++
T Consensus 446 ~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l 525 (636)
T 4eco_A 446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF 525 (636)
T ss_dssp CSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCC
T ss_pred CcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCC
Confidence 66654 21 4455555431 11 12277888888887777777765 778888888888888
Q ss_pred CCCchhHhhcccCCCC
Q 039599 277 EGLPASIKQISRLESL 292 (293)
Q Consensus 277 ~~~p~~l~~l~~L~~l 292 (293)
+++|..+..+++|+.|
T Consensus 526 ~~ip~~~~~l~~L~~L 541 (636)
T 4eco_A 526 SKFPTQPLNSSTLKGF 541 (636)
T ss_dssp SSCCCGGGGCSSCCEE
T ss_pred CCcChhhhcCCCCCEE
Confidence 7777777777777665
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=3.5e-29 Score=230.13 Aligned_cols=273 Identities=16% Similarity=0.202 Sum_probs=229.6
Q ss_pred EeecCcccceeechhhccCCccccEEEEeccceeeec-cc----ceEEEeccCCcccccCCCCCC-CcCceEEeecCCcC
Q 039599 9 FLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM-SI----EEQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCIN 82 (293)
Q Consensus 9 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~----~l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~ 82 (293)
.+++++|....+++..|..+++|++|++++|.+...+ .+ .|++|++++|.+.+..|..+. +++|++|++++|.+
T Consensus 258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp EEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred EEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence 3499999888898888999999999999999887332 22 299999999988776666654 45999999999987
Q ss_pred CcccCCC----CCCccEEeccccccccc---CccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCC
Q 039599 83 LTDFPHI----SGNITRLYLDETAIEEV---PSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFP 155 (293)
Q Consensus 83 ~~~~~~~----~~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 155 (293)
...+|.. +.+|++|++++|.+... +..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+
T Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 417 (606)
T 3t6q_A 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417 (606)
T ss_dssp CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence 7666543 45899999999998765 5678999999999999998887778888899999999999998877655
Q ss_pred h-hhhccccCCceecCCCcccccCCCcccccccCceecCCCC---c-cc--cccccCccccceecccCCCccCC-CCcCC
Q 039599 156 E-SLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL---D-NL--SDNIGNFKSFEYMGAHGSAISQL-PSLSS 227 (293)
Q Consensus 156 ~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---~-~l--~~~~~~l~~L~~L~l~~~~~~~~-~~l~~ 227 (293)
. .+..+++|++|++++|.+.+..+..+..+++|++|++++| + .+ +..+..+++|++|++++|.+.+. |.
T Consensus 418 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--- 494 (606)
T 3t6q_A 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH--- 494 (606)
T ss_dssp CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT---
T ss_pred chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh---
Confidence 4 4889999999999999998888888999999999999999 2 12 24678899999999999999887 44
Q ss_pred CCccCcccccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCCC-CchhHhhcccCCCCC
Q 039599 228 GLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLEG-LPASIKQISRLESLD 293 (293)
Q Consensus 228 ~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~-~p~~l~~l~~L~~ld 293 (293)
.++.+++|++|++++|.+++ .|.++..++.| .|++++|++++ .|..+..+++|+.+|
T Consensus 495 --------~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~ 553 (606)
T 3t6q_A 495 --------AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN 553 (606)
T ss_dssp --------TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE
T ss_pred --------hhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEe
Confidence 36788999999999999988 67789999999 99999999998 556678888887653
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=3.5e-29 Score=223.84 Aligned_cols=272 Identities=15% Similarity=0.178 Sum_probs=142.4
Q ss_pred ecCcccceeechhhccCCccccEEEEeccceeeec--ccc----eEEEeccCCcccccCCCCCC-CcCceEEeecCCcCC
Q 039599 11 NLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM--SIE----EQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINL 83 (293)
Q Consensus 11 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~----l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~ 83 (293)
|+++|....+.+..|..+++|++|++++|.+.... .+. |++|++++|.+....+..+. +.+|++|++++|.+.
T Consensus 38 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~ 117 (477)
T 2id5_A 38 DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117 (477)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC
T ss_pred ECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc
Confidence 55555555555555555555555555555544221 111 55555555543322222222 235555555555533
Q ss_pred cccCCC---CCCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhh
Q 039599 84 TDFPHI---SGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLE 159 (293)
Q Consensus 84 ~~~~~~---~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 159 (293)
...+.. +.+|++|++++|.+..+++ .+.++++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+.
T Consensus 118 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~ 197 (477)
T 2id5_A 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK 197 (477)
T ss_dssp EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSC
T ss_pred cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcc
Confidence 332322 2345555555555543332 445555555555555544433333344555555555555544443344455
Q ss_pred ccccCCceecCCCcccccCCCcccccccCceecCCCC--cccc-ccccCccccceecccCCCccCCCCcCCCCccCcccc
Q 039599 160 KMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLS-DNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASL 236 (293)
Q Consensus 160 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~-~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~ 236 (293)
.+++|++|++++|...+.++.......+|+.|++++| ..++ ..+..+++|++|++++|.+.+++. ..
T Consensus 198 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----------~~ 267 (477)
T 2id5_A 198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG----------SM 267 (477)
T ss_dssp SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT----------TS
T ss_pred cCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccCh----------hh
Confidence 5555555555555444444443333345555555555 2232 234455555555555555554422 02
Q ss_pred cCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCCCCch-hHhhcccCCCC
Q 039599 237 LSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLEGLPA-SIKQISRLESL 292 (293)
Q Consensus 237 ~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~~p~-~l~~l~~L~~l 292 (293)
+..+++|++|++++|.+++ .|.++..+++|+.|++++|+++++|+ .+..+++|+.|
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 325 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEE
T ss_pred ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEE
Confidence 5567778888888887777 45667777888888888888877554 34566666654
No 7
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=9.8e-29 Score=225.24 Aligned_cols=135 Identities=19% Similarity=0.261 Sum_probs=111.9
Q ss_pred hccccCCceecCCCcccccCCCcccccccCceecCCCC--c---cccccccCccccceecccCCCccC-CCC-cC---CC
Q 039599 159 EKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--D---NLSDNIGNFKSFEYMGAHGSAISQ-LPS-LS---SG 228 (293)
Q Consensus 159 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~---~l~~~~~~l~~L~~L~l~~~~~~~-~~~-l~---~~ 228 (293)
..+++|++|++++|.+++..|..+..+++|+.|++++| . .++..+..+++|++|++++|.+.+ +|. .. +.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 56788999999999998888888999999999999998 3 345668899999999999999988 554 22 56
Q ss_pred CccCcccc-------cCCc-cccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCchh-HhhcccCCCCC
Q 039599 229 LVPLSASL-------LSGL-SLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPAS-IKQISRLESLD 293 (293)
Q Consensus 229 l~~l~~~~-------~~~~-~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~-l~~l~~L~~ld 293 (293)
++.|+++. +..+ ++|++|++++|.++.+|..+..+++|+.|++++|+++++|+. +..+++|+.+|
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEE
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEE
Confidence 66666542 2233 689999999999999998888999999999999999999887 88888888764
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=2e-28 Score=210.10 Aligned_cols=275 Identities=20% Similarity=0.219 Sum_probs=182.5
Q ss_pred eEEEEeecCcccceeechhhccCCccccEEEEeccceeeecccc----eEEEeccCCcccccCCCCCCCcCceEEeecCC
Q 039599 5 IESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIE----EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSC 80 (293)
Q Consensus 5 ~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 80 (293)
++.+ +++++....++ .+..+++|++|++++|.+...+.+. |++|++++|.+.. ++....+++|++|++++|
T Consensus 46 L~~L--~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~l~~L~~L~l~~n 120 (347)
T 4fmz_A 46 ITKL--VVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-ISALQNLTNLRELYLNED 120 (347)
T ss_dssp CSEE--ECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CGGGTTCTTCSEEECTTS
T ss_pred ccEE--EEeCCccccch--hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC-chHHcCCCcCCEEECcCC
Confidence 3444 77777666665 4777888888888888776443333 8888888886443 343334558888888887
Q ss_pred cCCcccC--CCCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhh
Q 039599 81 INLTDFP--HISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESL 158 (293)
Q Consensus 81 ~~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 158 (293)
.+ ..++ ..+.+|++|++++|.....++.+..+++|++|++++|......+ +..+++|++|++++|.+.+ ++. +
T Consensus 121 ~i-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~ 195 (347)
T 4fmz_A 121 NI-SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-ISP-L 195 (347)
T ss_dssp CC-CCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-CGG-G
T ss_pred cc-cCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc-ccc-c
Confidence 73 3333 23457777787777554444457777777777777776544322 5677777777777775543 222 5
Q ss_pred hccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcC--CCCccCcc
Q 039599 159 EKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLS--SGLVPLSA 234 (293)
Q Consensus 159 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~--~~l~~l~~ 234 (293)
..+++|+++++++|.+.+..+ +..+++|+.|++++| ..++. +..+++|++|++++|.+.+++.+. +.++.|++
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 272 (347)
T 4fmz_A 196 ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNV 272 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred cCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEc
Confidence 666667777777766644322 556666667766666 33333 556666666666666666553321 34444443
Q ss_pred c--------ccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCCCCchhHhhcccCCCCC
Q 039599 235 S--------LLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293 (293)
Q Consensus 235 ~--------~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~ld 293 (293)
+ .+..+++|++|++++|.+++ .+..+..+++|+.|++++|+++++++ +..+++|+.+|
T Consensus 273 ~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~ 339 (347)
T 4fmz_A 273 GSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSAD 339 (347)
T ss_dssp CSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEES
T ss_pred cCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceee
Confidence 2 26678899999999999987 55678889999999999999999776 78888888765
No 9
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=6.6e-29 Score=224.29 Aligned_cols=135 Identities=19% Similarity=0.299 Sum_probs=110.7
Q ss_pred hccccCCceecCCCcccccCCCcccccccCceecCCCC--c---cccccccCccccceecccCCCccC-CCC--c--CCC
Q 039599 159 EKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--D---NLSDNIGNFKSFEYMGAHGSAISQ-LPS--L--SSG 228 (293)
Q Consensus 159 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~---~l~~~~~~l~~L~~L~l~~~~~~~-~~~--l--~~~ 228 (293)
..+++|++|++++|.+++..|..+..+++|++|++++| . .++..+..+++|++|++++|.+.+ +|. + .+.
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 56788999999999998878888899999999999998 3 455678899999999999999988 553 2 256
Q ss_pred CccCcccc-------cCCc-cccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCchh-HhhcccCCCCC
Q 039599 229 LVPLSASL-------LSGL-SLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPAS-IKQISRLESLD 293 (293)
Q Consensus 229 l~~l~~~~-------~~~~-~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~-l~~l~~L~~ld 293 (293)
++.|+++. ...+ ++|+.|++++|.++.+|..+..+++|+.|++++|+++++|.. +..+++|+.+|
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEE
Confidence 77766642 1222 689999999999999998888999999999999999998876 77788887653
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=1.2e-29 Score=214.69 Aligned_cols=232 Identities=19% Similarity=0.241 Sum_probs=186.7
Q ss_pred ceEEEeccCCcccc--cCCCCCCC-cCceEEeecC-CcCCcccCCC---CCCccEEeccccccc-ccCccccCCCCCCEE
Q 039599 48 EEQLLDSKGCKILR--SFPSNLHF-VSPVTIDFTS-CINLTDFPHI---SGNITRLYLDETAIE-EVPSSIKCLTNLKLL 119 (293)
Q Consensus 48 ~l~~L~l~~~~~~~--~~~~~~~~-~~L~~L~l~~-~~~~~~~~~~---~~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L 119 (293)
.++.|++++|.+.+ .+|..+.. ++|++|++++ |.+.+.+|.. +.+|++|++++|.+. .+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 47778888887766 66766654 4899999985 7666666654 457888899998886 777788888999999
Q ss_pred EeccCccccccccccccccccceecccccccCCCCChhhhccc-cCCceecCCCcccccCCCcccccccCceecCCCC--
Q 039599 120 RINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKME-HLNQINLGRTTITEQRPSSFENVKGLETLGFSEL-- 196 (293)
Q Consensus 120 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-- 196 (293)
++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+++..|..+..++ |+.|++++|
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 9999888777888888889999999999888778888888887 889999999988878888887776 999999888
Q ss_pred -ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCC
Q 039599 197 -DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGN 274 (293)
Q Consensus 197 -~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n 274 (293)
+..+..+..+++|+.|++++|.+.+.+. .+..+++|++|++++|.+++ +|.++..+++|+.|++++|
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-----------KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGG-----------GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecC-----------cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 4567778888899999999998876522 14567888999999998885 8888888999999999999
Q ss_pred cCCC-CchhHhhcccCCCC
Q 039599 275 NLEG-LPASIKQISRLESL 292 (293)
Q Consensus 275 ~l~~-~p~~l~~l~~L~~l 292 (293)
++++ +|.. ..+++|+.+
T Consensus 279 ~l~~~ip~~-~~l~~L~~l 296 (313)
T 1ogq_A 279 NLCGEIPQG-GNLQRFDVS 296 (313)
T ss_dssp EEEEECCCS-TTGGGSCGG
T ss_pred cccccCCCC-ccccccChH
Confidence 9886 7764 667777655
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=2.5e-29 Score=232.07 Aligned_cols=248 Identities=13% Similarity=0.126 Sum_probs=152.1
Q ss_pred eecCcccceeechhhccCCccccEEEEeccc-eee---ec---c-------cceEEEeccCCcccccCCC--CCC-CcCc
Q 039599 10 LNLSTIKGINLNLRAFSNMSNLRVLKFYIPE-ISV---HM---S-------IEEQLLDSKGCKILRSFPS--NLH-FVSP 72 (293)
Q Consensus 10 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~---~~---~-------~~l~~L~l~~~~~~~~~~~--~~~-~~~L 72 (293)
+++++|......+..|.++++|++|++++|. +.. +. . -.|++|++++|.+. .+|. .++ +++|
T Consensus 254 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L 332 (636)
T 4eco_A 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKL 332 (636)
T ss_dssp EEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTC
T ss_pred EEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCC
Confidence 3777777666666678888888888888887 543 11 1 23788888888766 6676 444 3478
Q ss_pred eEEeecCCcCCcccCCCCC---CccEEecccccccccCccccCCCC-CCEEEeccCcccccccccccccc--ccceeccc
Q 039599 73 VTIDFTSCINLTDFPHISG---NITRLYLDETAIEEVPSSIKCLTN-LKLLRINRCTRLKRVSTSICKLK--SLIALSAY 146 (293)
Q Consensus 73 ~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~~~~l~~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~ 146 (293)
++|++++|.+.+.+| .+. +|++|++++|.+..+|..+..+++ |++|++++|.+. .+|..+..+. +|++|+++
T Consensus 333 ~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls 410 (636)
T 4eco_A 333 GMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFS 410 (636)
T ss_dssp CEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECC
T ss_pred CEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECc
Confidence 888888887555776 443 566777777777777777777777 777777777655 5565554433 67777777
Q ss_pred ccccCCCCChhhh-------ccccCCceecCCCcccccCCCc-ccccccCceecCCCC--ccccccccC--------ccc
Q 039599 147 GCLNLERFPESLE-------KMEHLNQINLGRTTITEQRPSS-FENVKGLETLGFSEL--DNLSDNIGN--------FKS 208 (293)
Q Consensus 147 ~~~~~~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~~~--~~l~~~~~~--------l~~ 208 (293)
+|.+.+..|..+. .+++|++|++++|.++ .+|.. +..+++|+.|++++| ..++..... +++
T Consensus 411 ~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~ 489 (636)
T 4eco_A 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489 (636)
T ss_dssp SSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGG
T ss_pred CCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCC
Confidence 7766666666555 5566777777777665 33433 334666666666666 333332222 226
Q ss_pred cceecccCCCccCCCC-cCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEec
Q 039599 209 FEYMGAHGSAISQLPS-LSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHL 271 (293)
Q Consensus 209 L~~L~l~~~~~~~~~~-l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l 271 (293)
|++|++++|.+..+|. +. ...+++|++|++++|.++++|..+..+++|+.|++
T Consensus 490 L~~L~Ls~N~l~~lp~~~~----------~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 490 LTSIDLRFNKLTKLSDDFR----------ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGI 543 (636)
T ss_dssp CCEEECCSSCCCBCCGGGS----------TTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEEC
T ss_pred ccEEECcCCcCCccChhhh----------hccCCCcCEEECCCCCCCCcChhhhcCCCCCEEEC
Confidence 6666666666665544 11 01344444444444444444444444444444444
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=2.7e-28 Score=224.15 Aligned_cols=255 Identities=17% Similarity=0.164 Sum_probs=210.7
Q ss_pred hccCCccccEEEEeccceeeecccc----eEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccC-CCCCCccEEec
Q 039599 24 AFSNMSNLRVLKFYIPEISVHMSIE----EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFP-HISGNITRLYL 98 (293)
Q Consensus 24 ~~~~~~~L~~L~l~~~~~~~~~~~~----l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l 98 (293)
.+..+++|+.|+++++.+...+.+. +++|++++|.+ +.+|.. .+++|+.|++++|.....++ ..+.+|++|++
T Consensus 280 ~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l 357 (606)
T 3vq2_A 280 KFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDL 357 (606)
T ss_dssp SCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEEC
T ss_pred ccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEEEC
Confidence 3888999999999999887544333 99999999987 778855 77799999999997565553 24568999999
Q ss_pred cccccccc---CccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCC-hhhhccccCCceecCCCcc
Q 039599 99 DETAIEEV---PSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFP-ESLEKMEHLNQINLGRTTI 174 (293)
Q Consensus 99 ~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~ 174 (293)
++|.+... +..+..+++|++|++++|.+.. .|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+
T Consensus 358 s~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436 (606)
T ss_dssp CSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred cCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence 99998755 6788899999999999988554 66778899999999999998887776 6788999999999999999
Q ss_pred cccCCCcccccccCceecCCCC---c-cccccccCccccceecccCCCccCC-CCcCCCCccCcccccCCccccceeecC
Q 039599 175 TEQRPSSFENVKGLETLGFSEL---D-NLSDNIGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSASLLSGLSLLYWLHLN 249 (293)
Q Consensus 175 ~~~~~~~~~~~~~L~~L~l~~~---~-~l~~~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~ 249 (293)
.+..+..+..+++|++|++++| + ..+..+..+++|++|++++|.+.+. |. .++++++|++|+++
T Consensus 437 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----------~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG-----------VFDTLHRLQLLNMS 505 (606)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-----------TTTTCTTCCEEECC
T ss_pred CccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh-----------hhcccccCCEEECC
Confidence 8888888999999999999999 2 3677888999999999999998887 44 25677888888888
Q ss_pred CccCCc-CCcccCCCCCCcEEeccCCcCCCCchhHhhcc-cCCCC
Q 039599 250 NCALTS-IPQEIGYLSSLEWLHLRGNNLEGLPASIKQIS-RLESL 292 (293)
Q Consensus 250 ~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~-~L~~l 292 (293)
+|.+++ .|..+..+++|+.|++++|+++++|+.+..++ +|+.+
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l 550 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFF 550 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEE
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEE
Confidence 888887 47778888888888888888888887777765 46654
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=2e-28 Score=225.03 Aligned_cols=285 Identities=18% Similarity=0.128 Sum_probs=177.7
Q ss_pred eEEEEeecCcccceeechhhccCCccccEEEEeccceeeec--ccc----eEEEeccCCcccccCCCCCCCc-CceEEee
Q 039599 5 IESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM--SIE----EQLLDSKGCKILRSFPSNLHFV-SPVTIDF 77 (293)
Q Consensus 5 ~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~----l~~L~l~~~~~~~~~~~~~~~~-~L~~L~l 77 (293)
++.+ |+++|....+.+..|.++++|++|++++|.+.... .+. |++|++++|.+.+..|..++.. +|++|++
T Consensus 35 l~~L--~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 35 TECL--EFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp CCEE--ECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcEE--EccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 4444 88888888888888999999999999988876332 222 8889998888777767666544 8888888
Q ss_pred cCCcCCcccCC---CCCCccEEecccccccccC-ccccCCCCCCEEEeccCccccccccccccccccc--eecccccccC
Q 039599 78 TSCINLTDFPH---ISGNITRLYLDETAIEEVP-SSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLI--ALSAYGCLNL 151 (293)
Q Consensus 78 ~~~~~~~~~~~---~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~ 151 (293)
++|.+....|. .+.+|++|++++|.+..++ +.+..+++|++|++++|.+....+..+..+++|+ +|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 88875442222 3446777788888777653 3344477777777777766554455555555555 4555554433
Q ss_pred ---------------------------------------------------------------------------CCCCh
Q 039599 152 ---------------------------------------------------------------------------ERFPE 156 (293)
Q Consensus 152 ---------------------------------------------------------------------------~~~~~ 156 (293)
+..+.
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 22333
Q ss_pred hhhccccCCceecCCCcccccCCCcccccccCceecCCCC--c-cccccccCccccceecccCCCccC-CCC--cC--CC
Q 039599 157 SLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--D-NLSDNIGNFKSFEYMGAHGSAISQ-LPS--LS--SG 228 (293)
Q Consensus 157 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~-~l~~~~~~l~~L~~L~l~~~~~~~-~~~--l~--~~ 228 (293)
.+..+++|++|++++|.++ .+|..+..+++|++|++++| . ..+..+..+++|++|++++|.+.. +|. +. +.
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 3555666666666666664 45555666666666666666 2 224455666666666666665542 222 11 33
Q ss_pred CccCccc------------ccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCCCC-c-hhHhhcccCCCC
Q 039599 229 LVPLSAS------------LLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLEGL-P-ASIKQISRLESL 292 (293)
Q Consensus 229 l~~l~~~------------~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~~-p-~~l~~l~~L~~l 292 (293)
++.|+++ .++.+++|++|++++|.+++ .|..+..+++|+.|++++|++++. | ..+..+++|+.|
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 4444432 14556666677777666665 445566667777777777766652 2 235556666554
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=6.9e-29 Score=234.07 Aligned_cols=241 Identities=17% Similarity=0.206 Sum_probs=144.5
Q ss_pred eEEEeccCCcccc-----------------cCCCCCC---CcCceEEeecCCcCCcccCCCC---CCccEEeccccc-cc
Q 039599 49 EQLLDSKGCKILR-----------------SFPSNLH---FVSPVTIDFTSCINLTDFPHIS---GNITRLYLDETA-IE 104 (293)
Q Consensus 49 l~~L~l~~~~~~~-----------------~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~-~~ 104 (293)
|++|++++|.+.+ .+|..++ +.+|++|++++|.+.+.+|..+ .+|+.|++++|. +.
T Consensus 450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls 529 (876)
T 4ecn_A 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529 (876)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC
T ss_pred CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc
Confidence 6777777777665 2666654 4477777777777666666433 356666666665 54
Q ss_pred --ccCccccCC-------CCCCEEEeccCcccccccc--ccccccccceecccccccCCCCChhhhccccCCceecCCCc
Q 039599 105 --EVPSSIKCL-------TNLKLLRINRCTRLKRVST--SICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTT 173 (293)
Q Consensus 105 --~l~~~~~~l-------~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 173 (293)
.+|..+..+ ++|++|++++|.+. .+|. .+..+++|++|++++|.+. .+| .+..+++|++|++++|.
T Consensus 530 g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSC
T ss_pred cccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCc
Confidence 244433333 25666666665554 4554 5555666666666665544 444 45555555555555555
Q ss_pred ccccCCCccccccc-CceecCCCC--ccccccccC-------------------------------ccccceecccCCCc
Q 039599 174 ITEQRPSSFENVKG-LETLGFSEL--DNLSDNIGN-------------------------------FKSFEYMGAHGSAI 219 (293)
Q Consensus 174 ~~~~~~~~~~~~~~-L~~L~l~~~--~~l~~~~~~-------------------------------l~~L~~L~l~~~~~ 219 (293)
+. .+|..+..+++ |+.|++++| ..+|..+.. +++|+.|++++|.+
T Consensus 607 l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L 685 (876)
T 4ecn_A 607 IE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685 (876)
T ss_dssp CS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC
T ss_pred cc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC
Confidence 54 45555555555 555555555 333333222 22455555555555
Q ss_pred cCCCC-cC---CCCccCcccc----------cC-------CccccceeecCCccCCcCCcccC--CCCCCcEEeccCCcC
Q 039599 220 SQLPS-LS---SGLVPLSASL----------LS-------GLSLLYWLHLNNCALTSIPQEIG--YLSSLEWLHLRGNNL 276 (293)
Q Consensus 220 ~~~~~-l~---~~l~~l~~~~----------~~-------~~~~L~~L~l~~n~i~~l~~~~~--~~~~L~~L~l~~n~l 276 (293)
..+|. +. +.++.|+++. +. ++++|++|++++|.++.+|..+. .+++|+.|++++|++
T Consensus 686 ~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L 765 (876)
T 4ecn_A 686 QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF 765 (876)
T ss_dssp CSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCC
T ss_pred CccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCC
Confidence 55543 21 3455554431 11 22378888888888888887776 788888888888888
Q ss_pred CCCchhHhhcccCCCCC
Q 039599 277 EGLPASIKQISRLESLD 293 (293)
Q Consensus 277 ~~~p~~l~~l~~L~~ld 293 (293)
+++|..+..+++|+.|+
T Consensus 766 ~~lp~~l~~L~~L~~L~ 782 (876)
T 4ecn_A 766 SSFPTQPLNSSQLKAFG 782 (876)
T ss_dssp SSCCCGGGGCTTCCEEE
T ss_pred CccchhhhcCCCCCEEE
Confidence 88888888888887653
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=7.9e-28 Score=221.09 Aligned_cols=124 Identities=19% Similarity=0.068 Sum_probs=93.2
Q ss_pred ceEEEEeecCcccceeechhhccCCccccEEEEeccceeeec--ccc----eEEEeccCCcccccCCCCCCC-cCceEEe
Q 039599 4 AIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM--SIE----EQLLDSKGCKILRSFPSNLHF-VSPVTID 76 (293)
Q Consensus 4 ~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~----l~~L~l~~~~~~~~~~~~~~~-~~L~~L~ 76 (293)
.++.+ |+++|....+++..|.++++|++|++++|.+.... .+. |++|++++|.+.+..|..++. .+|++|+
T Consensus 33 ~l~~L--~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 33 STKNI--DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TCCEE--ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CcCEE--ECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 34555 88999888888888999999999999998876432 222 899999999877766777754 4899999
Q ss_pred ecCCcCCcccCCC---CCCccEEeccccccc--ccCccccCCCCCCEEEeccCccccc
Q 039599 77 FTSCINLTDFPHI---SGNITRLYLDETAIE--EVPSSIKCLTNLKLLRINRCTRLKR 129 (293)
Q Consensus 77 l~~~~~~~~~~~~---~~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~ 129 (293)
+++|.+....+.. +.+|++|++++|.+. .+|..++++++|++|++++|.+...
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 9988844333232 457888888888886 4677888888888888888765543
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.6e-28 Score=231.54 Aligned_cols=274 Identities=14% Similarity=0.171 Sum_probs=193.5
Q ss_pred ccceeechhhccCCccccEEEEeccceee------------------ec-cc------ceEEEeccCCcccccCCCCCCC
Q 039599 15 IKGINLNLRAFSNMSNLRVLKFYIPEISV------------------HM-SI------EEQLLDSKGCKILRSFPSNLHF 69 (293)
Q Consensus 15 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------------~~-~~------~l~~L~l~~~~~~~~~~~~~~~ 69 (293)
|....++ ..|.++++|++|++++|.+.. .+ .+ .|++|++++|.+.+.+|..+..
T Consensus 435 N~L~~IP-~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITFIS-KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEEEC-GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccchh-HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 3444444 367777888888888777665 11 11 1777888877777777766653
Q ss_pred -cCceEEeecCCc-CCc-ccCC----------CCCCccEEecccccccccCc--cccCCCCCCEEEeccCcccccccccc
Q 039599 70 -VSPVTIDFTSCI-NLT-DFPH----------ISGNITRLYLDETAIEEVPS--SIKCLTNLKLLRINRCTRLKRVSTSI 134 (293)
Q Consensus 70 -~~L~~L~l~~~~-~~~-~~~~----------~~~~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~l 134 (293)
++|+.|++++|. +.+ .+|. .+++|++|++++|.+..+|. .+..+++|++|++++|.+. .+| .+
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~ 591 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AF 591 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CC
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hh
Confidence 377777777776 443 3443 22367777777777777776 6777777777777777655 555 56
Q ss_pred ccccccceecccccccCCCCChhhhcccc-CCceecCCCcccccCCCcccc-----------------------------
Q 039599 135 CKLKSLIALSAYGCLNLERFPESLEKMEH-LNQINLGRTTITEQRPSSFEN----------------------------- 184 (293)
Q Consensus 135 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~----------------------------- 184 (293)
..+++|+.|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..
T Consensus 592 ~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669 (876)
T ss_dssp CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred cCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence 67777777777777655 66666666666 777777776664 44443322
Q ss_pred --cccCceecCCCC--cccccccc-CccccceecccCCCccCCCC-cCC----------CCccCcccc---------cC-
Q 039599 185 --VKGLETLGFSEL--DNLSDNIG-NFKSFEYMGAHGSAISQLPS-LSS----------GLVPLSASL---------LS- 238 (293)
Q Consensus 185 --~~~L~~L~l~~~--~~l~~~~~-~l~~L~~L~l~~~~~~~~~~-l~~----------~l~~l~~~~---------~~- 238 (293)
.++|+.|++++| ..+|..+. .+++|+.|++++|.+..+|. +.. .|+.|+++. +.
T Consensus 670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~ 749 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749 (876)
T ss_dssp CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST
T ss_pred ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhh
Confidence 235666666666 44555443 78999999999999998866 332 677777642 43
Q ss_pred -CccccceeecCCccCCcCCcccCCCCCCcEEeccC------CcCCC-CchhHhhcccCCCCC
Q 039599 239 -GLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRG------NNLEG-LPASIKQISRLESLD 293 (293)
Q Consensus 239 -~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~------n~l~~-~p~~l~~l~~L~~ld 293 (293)
.+++|+.|++++|.++++|..+..+++|+.|++++ |++.+ +|..+..+++|+.||
T Consensus 750 ~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~ 812 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812 (876)
T ss_dssp TTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred ccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEE
Confidence 78999999999999999999999999999999977 66775 899999999998764
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1.5e-28 Score=223.25 Aligned_cols=134 Identities=16% Similarity=0.251 Sum_probs=83.6
Q ss_pred hccccCCceecCCCcccccCC---CcccccccCceecCCCC--cccc---ccccCccccceecccCCCccCCCC------
Q 039599 159 EKMEHLNQINLGRTTITEQRP---SSFENVKGLETLGFSEL--DNLS---DNIGNFKSFEYMGAHGSAISQLPS------ 224 (293)
Q Consensus 159 ~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~~--~~l~---~~~~~l~~L~~L~l~~~~~~~~~~------ 224 (293)
..+++|++|++++|.+++..+ ..+..+++|+.|++++| ..++ ..+..+++|++|++++|.+..+|.
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~ 410 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE 410 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCT
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccc
Confidence 356677777777777655432 12344555555555555 2221 234445555555555555544433
Q ss_pred ------------------cCCCCccCcccc------cCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCc
Q 039599 225 ------------------LSSGLVPLSASL------LSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLP 280 (293)
Q Consensus 225 ------------------l~~~l~~l~~~~------~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p 280 (293)
+...++.|+++. ...+++|++|++++|.++.+|. ...+++|+.|++++|+++++|
T Consensus 411 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~ 489 (549)
T 2z81_A 411 KMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVP 489 (549)
T ss_dssp TCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCC
T ss_pred cccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcC
Confidence 223444444431 2367889999999999888886 457899999999999999854
Q ss_pred -hhHhhcccCCCCC
Q 039599 281 -ASIKQISRLESLD 293 (293)
Q Consensus 281 -~~l~~l~~L~~ld 293 (293)
..+..+++|+.+|
T Consensus 490 ~~~~~~l~~L~~L~ 503 (549)
T 2z81_A 490 DGIFDRLTSLQKIW 503 (549)
T ss_dssp TTGGGGCTTCCEEE
T ss_pred HHHHhcCcccCEEE
Confidence 5588888887654
No 18
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=1.1e-28 Score=208.92 Aligned_cols=219 Identities=17% Similarity=0.224 Sum_probs=182.9
Q ss_pred eEEEeccC-CcccccCCCCCC-CcCceEEeecCCcCCcccCCC---CCCccEEeccccccc-ccCccccCCCCCCEEEec
Q 039599 49 EQLLDSKG-CKILRSFPSNLH-FVSPVTIDFTSCINLTDFPHI---SGNITRLYLDETAIE-EVPSSIKCLTNLKLLRIN 122 (293)
Q Consensus 49 l~~L~l~~-~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~ 122 (293)
|++|++++ |.+.+.+|..+. +++|++|++++|.+.+.+|.. +.+|++|++++|.+. .+|..+..+++|++|+++
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence 44444442 444556676665 449999999999876677754 458999999999997 788889999999999999
Q ss_pred cCcccccccccccccc-ccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccc
Q 039599 123 RCTRLKRVSTSICKLK-SLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNL 199 (293)
Q Consensus 123 ~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l 199 (293)
+|.+.+..|..+..++ .|++|++++|.+.+.+|..+..++ |++|++++|.+++..+..+..+++|+.|++++| ...
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence 9998888898898988 999999999998888999999887 999999999998888888999999999999999 334
Q ss_pred cccccCccccceecccCCCccCC-CCcCCCCccCcccccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCc-C
Q 039599 200 SDNIGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNN-L 276 (293)
Q Consensus 200 ~~~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~-l 276 (293)
+..+..+++|++|++++|.+.+. |. .+..+++|++|++++|.+++ +|.. ..+++|+.+++++|+ +
T Consensus 237 ~~~~~~l~~L~~L~Ls~N~l~~~~p~-----------~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 237 LGKVGLSKNLNGLDLRNNRIYGTLPQ-----------GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp GGGCCCCTTCCEEECCSSCCEECCCG-----------GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred cCcccccCCCCEEECcCCcccCcCCh-----------HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence 44578899999999999999855 65 36688899999999999986 7765 889999999999997 5
Q ss_pred CCCc
Q 039599 277 EGLP 280 (293)
Q Consensus 277 ~~~p 280 (293)
.+.|
T Consensus 305 c~~p 308 (313)
T 1ogq_A 305 CGSP 308 (313)
T ss_dssp ESTT
T ss_pred cCCC
Confidence 5544
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=4.6e-28 Score=215.24 Aligned_cols=259 Identities=16% Similarity=0.152 Sum_probs=197.2
Q ss_pred ecCcccce-eechhhccCCccccEEEEeccceeee-c-ccc----eEEEeccCCcccccCCCC--CC-CcCceEEeecCC
Q 039599 11 NLSTIKGI-NLNLRAFSNMSNLRVLKFYIPEISVH-M-SIE----EQLLDSKGCKILRSFPSN--LH-FVSPVTIDFTSC 80 (293)
Q Consensus 11 ~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~-~-~~~----l~~L~l~~~~~~~~~~~~--~~-~~~L~~L~l~~~ 80 (293)
++++|... .+++..|..+++|++|++++|.+... + .+. |++|++++|.+.+..+.. +. +.+|++|++++|
T Consensus 60 ~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 139 (455)
T 3v47_A 60 KVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139 (455)
T ss_dssp ECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS
T ss_pred ECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC
Confidence 77777654 55566788888888888888876533 1 222 788888888765533322 43 347888888888
Q ss_pred cCCcccCCC----CCCccEEecccccccccCc-ccc----------------------------------CCCCCCEEEe
Q 039599 81 INLTDFPHI----SGNITRLYLDETAIEEVPS-SIK----------------------------------CLTNLKLLRI 121 (293)
Q Consensus 81 ~~~~~~~~~----~~~L~~L~l~~~~~~~l~~-~~~----------------------------------~l~~L~~L~l 121 (293)
.+....|.. +.+|++|++++|.+..+++ .+. .+++|++|++
T Consensus 140 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L 219 (455)
T 3v47_A 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDL 219 (455)
T ss_dssp BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEEC
T ss_pred ccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEec
Confidence 755444542 3577777887777754432 222 3467899999
Q ss_pred ccCcccccccccccc---------------------------------------ccccceecccccccCCCCChhhhccc
Q 039599 122 NRCTRLKRVSTSICK---------------------------------------LKSLIALSAYGCLNLERFPESLEKME 162 (293)
Q Consensus 122 ~~~~~~~~~~~~l~~---------------------------------------l~~L~~L~l~~~~~~~~~~~~~~~l~ 162 (293)
++|.+.+..+..+.. .++|++|++++|.+.+..+..+..++
T Consensus 220 s~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 299 (455)
T 3v47_A 220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT 299 (455)
T ss_dssp TTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC
Confidence 998766544433221 25789999999988888888999999
Q ss_pred cCCceecCCCcccccCCCcccccccCceecCCCC--c-cccccccCccccceecccCCCccCC-CCcCCCCccCcccccC
Q 039599 163 HLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--D-NLSDNIGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSASLLS 238 (293)
Q Consensus 163 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~-~l~~~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~~~~ 238 (293)
+|++|++++|.+.+..+..|..+++|+.|++++| . ..+..+..+++|++|++++|.+.++ |. .+.
T Consensus 300 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----------~~~ 368 (455)
T 3v47_A 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ-----------SFL 368 (455)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT-----------TTT
T ss_pred CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh-----------hcc
Confidence 9999999999998888888999999999999999 3 3467788999999999999999887 54 367
Q ss_pred CccccceeecCCccCCcCCc-ccCCCCCCcEEeccCCcCCC-Cc
Q 039599 239 GLSLLYWLHLNNCALTSIPQ-EIGYLSSLEWLHLRGNNLEG-LP 280 (293)
Q Consensus 239 ~~~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~l~~-~p 280 (293)
++++|++|++++|.++++|. .+..+++|+.|++++|++++ .|
T Consensus 369 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 369 GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 88999999999999999765 46889999999999999997 44
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=3.7e-27 Score=202.23 Aligned_cols=260 Identities=18% Similarity=0.259 Sum_probs=209.1
Q ss_pred hccCCccccEEEEeccceeeecccc----eEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccC--CCCCCccEEe
Q 039599 24 AFSNMSNLRVLKFYIPEISVHMSIE----EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFP--HISGNITRLY 97 (293)
Q Consensus 24 ~~~~~~~L~~L~l~~~~~~~~~~~~----l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~L~~L~ 97 (293)
.+..+++|++|+++++.+...+.+. +++|++++|.+.. ++....+++|++|++++|. .+.++ ..+.+|++|+
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~ 116 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD-ISPLSNLVKLTNLYIGTNK-ITDISALQNLTNLRELY 116 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEE
T ss_pred cchhcccccEEEEeCCccccchhhhhcCCccEEEccCCcccc-chhhhcCCcCCEEEccCCc-ccCchHHcCCCcCCEEE
Confidence 4567889999999999887554443 9999999997654 3444445699999999998 44454 3456899999
Q ss_pred cccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCccccc
Q 039599 98 LDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQ 177 (293)
Q Consensus 98 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 177 (293)
+++|.+..++. +..+++|++|++++|......+. +..+++|++|++++|...+..+ +..+++|++|++++|.+.+.
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC
T ss_pred CcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc
Confidence 99999998877 88999999999999976665444 7899999999999997654333 88999999999999999654
Q ss_pred CCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcC--CCCccCccc--------ccCCccccce
Q 039599 178 RPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLS--SGLVPLSAS--------LLSGLSLLYW 245 (293)
Q Consensus 178 ~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~--~~l~~l~~~--------~~~~~~~L~~ 245 (293)
+. +..+++|+.++++++ ...+. +..+++|++|++++|.+.+.+.+. +.++.|+++ .+..+++|++
T Consensus 193 -~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 269 (347)
T 4fmz_A 193 -SP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKM 269 (347)
T ss_dssp -GG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCE
T ss_pred -cc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCE
Confidence 32 788999999999998 33333 788999999999999998885422 566666654 3678889999
Q ss_pred eecCCccCCcCCcccCCCCCCcEEeccCCcCCC-CchhHhhcccCCCCC
Q 039599 246 LHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEG-LPASIKQISRLESLD 293 (293)
Q Consensus 246 L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~-~p~~l~~l~~L~~ld 293 (293)
|++++|.+++++ .+..+++|+.|++++|++++ .|..+..+++|+.|+
T Consensus 270 L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 270 LNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317 (347)
T ss_dssp EECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred EEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEE
Confidence 999999998874 47889999999999999987 667788888888764
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=9.2e-28 Score=209.27 Aligned_cols=252 Identities=15% Similarity=0.117 Sum_probs=131.4
Q ss_pred ecCcccceeechhhccCCccccEEEEeccceeeec--ccc----eEEEeccCCcccccCCCCCC-CcCceEEeecCCcCC
Q 039599 11 NLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM--SIE----EQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINL 83 (293)
Q Consensus 11 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~----l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~ 83 (293)
+++++....++...|..+++|++|++++|.+...+ .+. |++|++++|.+.+..|..+. +++|++|++++|. .
T Consensus 51 ~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l 129 (390)
T 3o6n_A 51 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-L 129 (390)
T ss_dssp EEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-C
T ss_pred EecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc-c
Confidence 66666666666666777777777777777665332 122 77777777776555555444 3477777777776 3
Q ss_pred cccCCC----CCCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccccCCC-CChh
Q 039599 84 TDFPHI----SGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLER-FPES 157 (293)
Q Consensus 84 ~~~~~~----~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~ 157 (293)
+.+|.. +.+|++|++++|.+..+++ .+..+++|++|++++|.+.... +..+++|+.|++++|.+.+. .+..
T Consensus 130 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~ 206 (390)
T 3o6n_A 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIA 206 (390)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSS
T ss_pred CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCc
Confidence 345432 3467777777777766544 4667777777777776654421 23334444444443322210 0000
Q ss_pred h---------------hccccCCceecCCCcccccCCCcccccccCceecCCCC---ccccccccCccccceecccCCCc
Q 039599 158 L---------------EKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHGSAI 219 (293)
Q Consensus 158 ~---------------~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~~~~ 219 (293)
+ ...++|++|++++|.+++. ..+..+++|+.|++++| +..+..+..+++|++|++++|.+
T Consensus 207 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (390)
T 3o6n_A 207 VEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284 (390)
T ss_dssp CSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC
T ss_pred ceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC
Confidence 0 0112344444444444321 23444455555555554 22234444555555555555554
Q ss_pred cCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCC
Q 039599 220 SQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGL 279 (293)
Q Consensus 220 ~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~ 279 (293)
.++|. .+..+++|++|++++|.++.+|..+..+++|+.|++++|+++++
T Consensus 285 ~~~~~-----------~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 285 VALNL-----------YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp CEEEC-----------SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred cccCc-----------ccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcccee
Confidence 44422 12234445555555555554444444455555555555555444
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=3e-27 Score=211.27 Aligned_cols=262 Identities=17% Similarity=0.161 Sum_probs=220.7
Q ss_pred ceEEEEeecCcccceeechhhccCCccccEEEEeccceeeecc--c----ceEEEeccCCcccccCCCCCCC-cCceEEe
Q 039599 4 AIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMS--I----EEQLLDSKGCKILRSFPSNLHF-VSPVTID 76 (293)
Q Consensus 4 ~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~----~l~~L~l~~~~~~~~~~~~~~~-~~L~~L~ 76 (293)
.++.+ ++++|....+.+..|.++++|++|++++|.+...+. + .|++|++++|.+....+..+.. ++|+.|+
T Consensus 57 ~L~~L--~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 57 HLEEL--ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp TCCEE--ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEE--ECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 34555 999999999988899999999999999998874331 2 2999999999988777777654 4999999
Q ss_pred ecCCcCCcccCCC---CCCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccccCC
Q 039599 77 FTSCINLTDFPHI---SGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLE 152 (293)
Q Consensus 77 l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 152 (293)
+++|.+....+.. +.+|++|++++|.+..++. .+..+++|+.|++++|.+....+..+..+++|++|++++|...+
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence 9999855544433 4589999999999998886 58899999999999998877667788899999999999998888
Q ss_pred CCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--cc-ccccccCccccceecccCCCccCC-CCcCCC
Q 039599 153 RFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DN-LSDNIGNFKSFEYMGAHGSAISQL-PSLSSG 228 (293)
Q Consensus 153 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~-l~~~~~~l~~L~~L~l~~~~~~~~-~~l~~~ 228 (293)
.+++......+|++|++++|.+++..+..+..+++|+.|++++| .. .+..+..+++|+.|++++|.+.++ |.
T Consensus 215 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---- 290 (477)
T 2id5_A 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY---- 290 (477)
T ss_dssp EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT----
T ss_pred ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH----
Confidence 88877777779999999999997544456889999999999999 33 344678899999999999999887 44
Q ss_pred CccCcccccCCccccceeecCCccCCcCCc-ccCCCCCCcEEeccCCcCCC
Q 039599 229 LVPLSASLLSGLSLLYWLHLNNCALTSIPQ-EIGYLSSLEWLHLRGNNLEG 278 (293)
Q Consensus 229 l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~l~~ 278 (293)
.+.++++|++|++++|.++.++. .+..+++|+.|++++|++..
T Consensus 291 -------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 291 -------AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp -------TBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred -------HhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 36788999999999999999665 57889999999999999875
No 23
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=3.7e-27 Score=224.16 Aligned_cols=275 Identities=19% Similarity=0.189 Sum_probs=172.9
Q ss_pred ceEEEEeecCcccceeechhhccCCccccEEEEecccee--e-ecccc----eEEEeccCCcccccCCCCCCCc-CceEE
Q 039599 4 AIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEIS--V-HMSIE----EQLLDSKGCKILRSFPSNLHFV-SPVTI 75 (293)
Q Consensus 4 ~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~-~~~~~----l~~L~l~~~~~~~~~~~~~~~~-~L~~L 75 (293)
.++.+ |+++|....+.+..|.++++|++|++++|... . +..+. |++|++++|.+.+..|..+... +|++|
T Consensus 25 ~l~~L--dLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 25 TTERL--LLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TCCEE--EEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CcCEE--ECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 45555 88888888888888899999999999888443 1 11222 8999999988877777777644 89999
Q ss_pred eecCCcCCcccCC-----CCCCccEEecccccccccC--ccccCCCCCCEEEeccCccccccccccccc--cccceeccc
Q 039599 76 DFTSCINLTDFPH-----ISGNITRLYLDETAIEEVP--SSIKCLTNLKLLRINRCTRLKRVSTSICKL--KSLIALSAY 146 (293)
Q Consensus 76 ~l~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~ 146 (293)
++++|.+...+|. .+.+|++|++++|.+..++ +.++++++|++|++++|.+....+..+..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 9999886655543 2457888899998887553 468888999999999888776666666655 677777777
Q ss_pred ccccCCCCChhhhcccc------CCceecCCCcccccCCCcccc------------------------------------
Q 039599 147 GCLNLERFPESLEKMEH------LNQINLGRTTITEQRPSSFEN------------------------------------ 184 (293)
Q Consensus 147 ~~~~~~~~~~~~~~l~~------L~~L~l~~n~~~~~~~~~~~~------------------------------------ 184 (293)
.|.+.+..+..+..+++ |++|++++|.+++..+..+..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 77666655554444443 677777776554433332221
Q ss_pred --cccCceecCCCC---ccccccccCccccceecccCCCccCC-CC-cC--CCCccCccc----------ccCCccccce
Q 039599 185 --VKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHGSAISQL-PS-LS--SGLVPLSAS----------LLSGLSLLYW 245 (293)
Q Consensus 185 --~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~~~~~~~-~~-l~--~~l~~l~~~----------~~~~~~~L~~ 245 (293)
.++|+.|++++| ...+..+..+++|+.|++++|.+.+. |. +. +.++.|+++ .+.++++|++
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 135566666555 22344455566666666666666555 22 11 222222211 2445555555
Q ss_pred eecCCccCCcCC-cccCCCCCCcEEeccCCcCCCCc
Q 039599 246 LHLNNCALTSIP-QEIGYLSSLEWLHLRGNNLEGLP 280 (293)
Q Consensus 246 L~l~~n~i~~l~-~~~~~~~~L~~L~l~~n~l~~~p 280 (293)
|++++|.++.++ ..+..+++|+.|++++|.+++++
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence 555555555533 23455555555555555555443
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.1e-27 Score=214.45 Aligned_cols=144 Identities=18% Similarity=0.192 Sum_probs=115.7
Q ss_pred ccccccceecccccccCCCCChhhhccccCCceecCCCcccc--cCCCcccccccCceecCCCC--cc-cccc-ccCccc
Q 039599 135 CKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITE--QRPSSFENVKGLETLGFSEL--DN-LSDN-IGNFKS 208 (293)
Q Consensus 135 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~~--~~-l~~~-~~~l~~ 208 (293)
..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..+++|+.|++++| .. ++.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 456788888888888887788888899999999999998865 44566788899999999988 33 5553 667888
Q ss_pred cceecccCCCccCC-CC-cCCCCccCcccc---------cCCccccceeecCCccCCcCCcc-cCCCCCCcEEeccCCcC
Q 039599 209 FEYMGAHGSAISQL-PS-LSSGLVPLSASL---------LSGLSLLYWLHLNNCALTSIPQE-IGYLSSLEWLHLRGNNL 276 (293)
Q Consensus 209 L~~L~l~~~~~~~~-~~-l~~~l~~l~~~~---------~~~~~~L~~L~l~~n~i~~l~~~-~~~~~~L~~L~l~~n~l 276 (293)
|++|++++|.+.+. |. +.+.++.|+++. +..+++|++|++++|.++.+|.. +..+++|+.|++++|++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCC
Confidence 88999988888654 43 335666666542 44788999999999999998876 88999999999999999
Q ss_pred CC
Q 039599 277 EG 278 (293)
Q Consensus 277 ~~ 278 (293)
+.
T Consensus 481 ~c 482 (520)
T 2z7x_B 481 DC 482 (520)
T ss_dssp CC
T ss_pred cc
Confidence 86
No 25
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.2e-27 Score=203.62 Aligned_cols=215 Identities=17% Similarity=0.254 Sum_probs=141.0
Q ss_pred eEEEeccCCcccccCCCCCC-CcCceEEeecCCcCCcccCCCC---CCccEEecccccccccCccccCCCCCCEEEeccC
Q 039599 49 EQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINLTDFPHIS---GNITRLYLDETAIEEVPSSIKCLTNLKLLRINRC 124 (293)
Q Consensus 49 l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~ 124 (293)
++.|++++|.+. .+|..+. +.+|++|++++|.+. .+|..+ .+|++|++++|.+..+|..+..+++|++|++++|
T Consensus 83 l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 83 RVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp CCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred eeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence 677777777654 5555443 347777777777644 666543 4677777777777777777777777777777776
Q ss_pred cccccccccccc---------ccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCC
Q 039599 125 TRLKRVSTSICK---------LKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSE 195 (293)
Q Consensus 125 ~~~~~~~~~l~~---------l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 195 (293)
...+.+|..+.. +++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTT
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcC
Confidence 666666655443 677777777777554 66666777777777777777775 3555566677777777776
Q ss_pred C---ccccccccCccccceecccCCCccCC-CCcCCCCccCcccccCCccccceeecCCccCCc-CCcccCCCCCCcEEe
Q 039599 196 L---DNLSDNIGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLH 270 (293)
Q Consensus 196 ~---~~l~~~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~ 270 (293)
| +.+|..+..+++|++|++++|.+.+. |. .+..+++|++|++++|.+.+ +|.++..+++|+.++
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~-----------~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL-----------DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT-----------TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcch-----------hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 5 45566666677777777777655443 43 24466667777777765544 777777777777777
Q ss_pred ccCCcCCC
Q 039599 271 LRGNNLEG 278 (293)
Q Consensus 271 l~~n~l~~ 278 (293)
+..+.+..
T Consensus 308 l~~~~~~~ 315 (328)
T 4fcg_A 308 VPPHLQAQ 315 (328)
T ss_dssp CCGGGSCC
T ss_pred CCHHHHHH
Confidence 76665554
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1e-26 Score=207.19 Aligned_cols=190 Identities=19% Similarity=0.349 Sum_probs=92.8
Q ss_pred ccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCC
Q 039599 93 ITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRT 172 (293)
Q Consensus 93 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 172 (293)
|++|++++|.+..++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ + +.+..+++|++|++++|
T Consensus 179 L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 179 LERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANN 253 (466)
T ss_dssp CCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSS
T ss_pred CCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCC
Confidence 344444444433332 23344444444444444333222 3334444444444443322 1 23444555555555555
Q ss_pred cccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcC--CCCccCcccc--------cCCc
Q 039599 173 TITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLS--SGLVPLSASL--------LSGL 240 (293)
Q Consensus 173 ~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~--~~l~~l~~~~--------~~~~ 240 (293)
.+.+..+ +..+++|+.|++++| ..++. +..+++|+.|++++|.+.+++.+. +.++.|+++. +..+
T Consensus 254 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l 330 (466)
T 1o6v_A 254 QISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL 330 (466)
T ss_dssp CCCCCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGC
T ss_pred ccccchh--hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccC
Confidence 5533222 445555555555555 22222 445555566666555555553211 3344444321 3455
Q ss_pred cccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCchhHhhcccCCCC
Q 039599 241 SLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESL 292 (293)
Q Consensus 241 ~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~l 292 (293)
++|++|++++|.+++++ .+..+++|+.|++++|++++.++ +..+++|+.|
T Consensus 331 ~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 380 (466)
T 1o6v_A 331 TKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQL 380 (466)
T ss_dssp TTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEE
T ss_pred ccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch-hhcCCCCCEE
Confidence 66666666666666653 45666777777777777766544 5556666543
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=4.3e-27 Score=215.75 Aligned_cols=252 Identities=15% Similarity=0.117 Sum_probs=138.1
Q ss_pred ecCcccceeechhhccCCccccEEEEeccceeeec--ccc----eEEEeccCCcccccCCCCCC-CcCceEEeecCCcCC
Q 039599 11 NLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM--SIE----EQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINL 83 (293)
Q Consensus 11 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~----l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~ 83 (293)
+++++....+++..|..+++|++|++++|.+...+ .+. |++|++++|.+.+..|..++ +++|++|++++|. +
T Consensus 57 ~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l 135 (597)
T 3oja_B 57 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-L 135 (597)
T ss_dssp EESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-C
T ss_pred EeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC-C
Confidence 66666666677667777778888888877766432 222 77888887776665555544 4478888888777 3
Q ss_pred cccCCC----CCCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccccCCC-CChh
Q 039599 84 TDFPHI----SGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLER-FPES 157 (293)
Q Consensus 84 ~~~~~~----~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~ 157 (293)
+.+|.. +.+|++|++++|.+..+++ .+..+++|++|++++|.+.... +..+++|+.|++++|.+.+. .+..
T Consensus 136 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~ 212 (597)
T 3oja_B 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIA 212 (597)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTT
T ss_pred CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCch
Confidence 445432 3467777888877766654 5677778888888777655421 23344444444444432210 0000
Q ss_pred h---------------hccccCCceecCCCcccccCCCcccccccCceecCCCC---ccccccccCccccceecccCCCc
Q 039599 158 L---------------EKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHGSAI 219 (293)
Q Consensus 158 ~---------------~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~~~~ 219 (293)
+ ...++|+.|++++|.+++ +..+..+++|+.|++++| +..+..+..+++|+.|++++|.+
T Consensus 213 L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 213 VEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290 (597)
T ss_dssp CSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred hheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence 0 001234444444444432 233445555555555555 22344455555555555555555
Q ss_pred cCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCC
Q 039599 220 SQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGL 279 (293)
Q Consensus 220 ~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~ 279 (293)
.++|. .+..+++|+.|++++|.++.+|..+..+++|+.|++++|.++++
T Consensus 291 ~~l~~-----------~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 291 VALNL-----------YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp CEEEC-----------SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred CCCCc-----------ccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCc
Confidence 54432 12234455555555555555554444455555555555555544
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=6.6e-27 Score=213.15 Aligned_cols=275 Identities=16% Similarity=0.149 Sum_probs=176.2
Q ss_pred eecCcccceeechhhccCCccccEEEEeccceeeec--ccc----eEEEeccCCcccccCCCCCCC-cCceEEeecCCcC
Q 039599 10 LNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM--SIE----EQLLDSKGCKILRSFPSNLHF-VSPVTIDFTSCIN 82 (293)
Q Consensus 10 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~----l~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~ 82 (293)
+|++++....++.... +++++|++++|.+...+ .+. |++|++++|.+.+..|..+.. .+|++|++++|.
T Consensus 36 l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~- 111 (562)
T 3a79_B 36 VDYSNRNLTHVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR- 111 (562)
T ss_dssp EECTTSCCCSCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-
T ss_pred EEcCCCCCccCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-
Confidence 4777776666664222 67778888877776332 222 778888877766665666553 478888888777
Q ss_pred CcccCC-CCCCccEEecccccccccC--ccccCCCCCCEEEeccCcccccccccccccccc--ceeccccccc--CCCCC
Q 039599 83 LTDFPH-ISGNITRLYLDETAIEEVP--SSIKCLTNLKLLRINRCTRLKRVSTSICKLKSL--IALSAYGCLN--LERFP 155 (293)
Q Consensus 83 ~~~~~~-~~~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~--~~~~~ 155 (293)
++.+|. .+.+|++|++++|.+..++ ..++++++|++|++++|.+... .+..+++| ++|++++|.+ .+..|
T Consensus 112 l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~ 188 (562)
T 3a79_B 112 LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGET 188 (562)
T ss_dssp CCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSC
T ss_pred CCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCc
Confidence 345554 3457777788888777654 5677777888888877765442 22333333 6666666544 32222
Q ss_pred hhhhcc--------------------------------------------------------------------------
Q 039599 156 ESLEKM-------------------------------------------------------------------------- 161 (293)
Q Consensus 156 ~~~~~l-------------------------------------------------------------------------- 161 (293)
..+..+
T Consensus 189 ~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~ 268 (562)
T 3a79_B 189 ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268 (562)
T ss_dssp CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHH
T ss_pred ccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHH
Confidence 222221
Q ss_pred -------ccCCceecCCCcccccCCCcc----------------------------------------------------
Q 039599 162 -------EHLNQINLGRTTITEQRPSSF---------------------------------------------------- 182 (293)
Q Consensus 162 -------~~L~~L~l~~n~~~~~~~~~~---------------------------------------------------- 182 (293)
++|++|++++|.+++.+|..+
T Consensus 269 ~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 348 (562)
T 3a79_B 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC 348 (562)
T ss_dssp HHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC
T ss_pred HHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC
Confidence 145555555555554444432
Q ss_pred -cccccCceecCCCC---ccccccccCccccceecccCCCccCCCC----cC--CCCccCccc-----------ccCCcc
Q 039599 183 -ENVKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHGSAISQLPS----LS--SGLVPLSAS-----------LLSGLS 241 (293)
Q Consensus 183 -~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~~~~~~~~~----l~--~~l~~l~~~-----------~~~~~~ 241 (293)
..+++|+.|++++| +..+..+..+++|++|++++|.+.+++. +. +.++.|+++ .+..++
T Consensus 349 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 45678888888888 4466777888889999998888887642 11 445555443 144566
Q ss_pred ccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCCCCchhHhhcccCCCCC
Q 039599 242 LLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293 (293)
Q Consensus 242 ~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~ld 293 (293)
+|++|++++|.+++ +|..+. ++|+.|++++|+++.+|+.+..+++|+.||
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~ 479 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELN 479 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEE
T ss_pred cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEE
Confidence 77777777777765 443332 689999999999999988888888887664
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=5e-26 Score=193.92 Aligned_cols=264 Identities=14% Similarity=0.171 Sum_probs=204.2
Q ss_pred ecCcccceeechhhccCCccccEEEEeccceeeecc--cc----eEEEeccCCcccccCCCCCCC-cCceEEeecCCcCC
Q 039599 11 NLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMS--IE----EQLLDSKGCKILRSFPSNLHF-VSPVTIDFTSCINL 83 (293)
Q Consensus 11 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~----l~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~ 83 (293)
+++++....++. .+ .+++++|++++|.+...+. +. |++|++++|.+.+..|..+.. ++|++|++++|. +
T Consensus 37 ~~~~~~l~~lp~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l 112 (330)
T 1xku_A 37 QCSDLGLEKVPK-DL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-L 112 (330)
T ss_dssp ECTTSCCCSCCC-SC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-C
T ss_pred EecCCCccccCc-cC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-C
Confidence 666665555553 22 2578999999988874332 22 899999999877766777754 499999999998 5
Q ss_pred cccCCCC-CCccEEecccccccccCc-cccCCCCCCEEEeccCcccc--ccccccccccccceecccccccCCCCChhhh
Q 039599 84 TDFPHIS-GNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLK--RVSTSICKLKSLIALSAYGCLNLERFPESLE 159 (293)
Q Consensus 84 ~~~~~~~-~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 159 (293)
+.+|..+ .+|++|++++|.+..+++ .+.++++|++|++++|.+.. ..+..+..+++|++|++++|.+. .+|..+.
T Consensus 113 ~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~ 191 (330)
T 1xku_A 113 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP 191 (330)
T ss_dssp SBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC
T ss_pred CccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc
Confidence 5666544 589999999999988876 57889999999999987753 45667888999999999998665 3554432
Q ss_pred ccccCCceecCCCcccccCCCcccccccCceecCCCC--ccc-cccccCccccceecccCCCccCCCCcCCCCccCcccc
Q 039599 160 KMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNL-SDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASL 236 (293)
Q Consensus 160 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l-~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~ 236 (293)
++|++|++++|.+++..+..+..+++|+.|++++| ..+ +..+..+++|++|++++|.+..+|. .
T Consensus 192 --~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-----------~ 258 (330)
T 1xku_A 192 --PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-----------G 258 (330)
T ss_dssp --TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-----------T
T ss_pred --ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh-----------h
Confidence 78999999999998777788889999999999998 333 4467888999999999999988866 2
Q ss_pred cCCccccceeecCCccCCcCCc-ccC------CCCCCcEEeccCCcCCC---CchhHhhcccCCCC
Q 039599 237 LSGLSLLYWLHLNNCALTSIPQ-EIG------YLSSLEWLHLRGNNLEG---LPASIKQISRLESL 292 (293)
Q Consensus 237 ~~~~~~L~~L~l~~n~i~~l~~-~~~------~~~~L~~L~l~~n~l~~---~p~~l~~l~~L~~l 292 (293)
+..+++|++|++++|.|++++. .+. ..+.++.+++++|++.. .|..+..+.+++.+
T Consensus 259 l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l 324 (330)
T 1xku_A 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 324 (330)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGE
T ss_pred hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEE
Confidence 5678899999999999998654 343 24788999999999873 45667777777655
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=3.3e-26 Score=195.19 Aligned_cols=264 Identities=15% Similarity=0.169 Sum_probs=202.9
Q ss_pred ecCcccceeechhhccCCccccEEEEeccceeeec--ccc----eEEEeccCCcccccCCCCCC-CcCceEEeecCCcCC
Q 039599 11 NLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM--SIE----EQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINL 83 (293)
Q Consensus 11 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~----l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~ 83 (293)
+++++....++.. + .+++++|++++|.+.... .+. |++|++++|.+.+..|..+. +++|++|++++|. .
T Consensus 39 ~~~~~~l~~ip~~-~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l 114 (332)
T 2ft3_A 39 QCSDLGLKAVPKE-I--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-L 114 (332)
T ss_dssp ECCSSCCSSCCSC-C--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-C
T ss_pred ECCCCCccccCCC-C--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-C
Confidence 6777666555542 2 267889999988876432 222 89999999887766666665 4599999999988 4
Q ss_pred cccCCCC-CCccEEecccccccccCc-cccCCCCCCEEEeccCcccc--ccccccccccccceecccccccCCCCChhhh
Q 039599 84 TDFPHIS-GNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLK--RVSTSICKLKSLIALSAYGCLNLERFPESLE 159 (293)
Q Consensus 84 ~~~~~~~-~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 159 (293)
+.+|... .+|++|++++|.+..++. .+..+++|++|++++|.+.. ..+..+..+ +|++|++++|.+.+ +|..+.
T Consensus 115 ~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~ 192 (332)
T 2ft3_A 115 VEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP 192 (332)
T ss_dssp CSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC
T ss_pred CccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc
Confidence 5666544 589999999999988876 57889999999999987753 445566666 89999999987654 554433
Q ss_pred ccccCCceecCCCcccccCCCcccccccCceecCCCC--ccc-cccccCccccceecccCCCccCCCCcCCCCccCcccc
Q 039599 160 KMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNL-SDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASL 236 (293)
Q Consensus 160 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l-~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~ 236 (293)
++|++|++++|.+++..+..+..+++|+.|++++| ..+ +..+..+++|++|++++|.+..+|. .
T Consensus 193 --~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-----------~ 259 (332)
T 2ft3_A 193 --ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA-----------G 259 (332)
T ss_dssp --SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT-----------T
T ss_pred --CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh-----------h
Confidence 68999999999998777778889999999999998 333 4467889999999999999988866 2
Q ss_pred cCCccccceeecCCccCCcCCc-ccCC------CCCCcEEeccCCcCC--C-CchhHhhcccCCCCC
Q 039599 237 LSGLSLLYWLHLNNCALTSIPQ-EIGY------LSSLEWLHLRGNNLE--G-LPASIKQISRLESLD 293 (293)
Q Consensus 237 ~~~~~~L~~L~l~~n~i~~l~~-~~~~------~~~L~~L~l~~n~l~--~-~p~~l~~l~~L~~ld 293 (293)
+..+++|++|++++|.+++++. .+.. .+.|+.+++++|++. + .|..+..+++|+.++
T Consensus 260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~ 326 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEE
T ss_pred hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhh
Confidence 5678899999999999998653 3433 467899999999987 3 566788888888763
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=3.3e-27 Score=215.37 Aligned_cols=284 Identities=17% Similarity=0.171 Sum_probs=174.1
Q ss_pred ceEEEEeecCcccceeechhhccCCccccEEEEeccceeeec--cc----ceEEEeccCCcccccCCCCCCC-cCceEEe
Q 039599 4 AIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM--SI----EEQLLDSKGCKILRSFPSNLHF-VSPVTID 76 (293)
Q Consensus 4 ~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~----~l~~L~l~~~~~~~~~~~~~~~-~~L~~L~ 76 (293)
.++.+ |+++|....+.+..|..+++|++|++++|.+.... .+ .|++|++++|.+....+..+.. .+|++|+
T Consensus 29 ~l~~L--~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 29 STKNL--DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SCCEE--ECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccEE--EccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 34444 88888888888778888888888888888776332 12 2888888888866665566654 4888888
Q ss_pred ecCCcCCcccCC----CCCCccEEecccccccc--cCccccCCCCCCEEEeccCcccccccccccccccc----ceeccc
Q 039599 77 FTSCINLTDFPH----ISGNITRLYLDETAIEE--VPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSL----IALSAY 146 (293)
Q Consensus 77 l~~~~~~~~~~~----~~~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~l~ 146 (293)
+++|. .+.++. .+.+|++|++++|.+.. +|..++++++|++|++++|.+....+..+..+++| +.++++
T Consensus 107 L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 107 AVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp CTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 88887 443332 34578888888888864 67788888888888888887766555666666666 667777
Q ss_pred ccccCCCCChhhhccccCCceecCCC------------------------------------------------------
Q 039599 147 GCLNLERFPESLEKMEHLNQINLGRT------------------------------------------------------ 172 (293)
Q Consensus 147 ~~~~~~~~~~~~~~l~~L~~L~l~~n------------------------------------------------------ 172 (293)
+|.+.+..+..+... +|++|++++|
T Consensus 186 ~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 765544333333322 3444444433
Q ss_pred ----cccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCC-cCC------------------
Q 039599 173 ----TITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPS-LSS------------------ 227 (293)
Q Consensus 173 ----~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~-l~~------------------ 227 (293)
.+.+..+..+..+++|+.|+++++ ..++..+..+ +|+++++++|.+..+|. ..+
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~ 343 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 343 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc
Confidence 122233344455566666666665 4455555555 56666666665554433 112
Q ss_pred ----CCccCccc------------ccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCc--hhHhhcccC
Q 039599 228 ----GLVPLSAS------------LLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLP--ASIKQISRL 289 (293)
Q Consensus 228 ----~l~~l~~~------------~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p--~~l~~l~~L 289 (293)
.++.|+++ .+.++++|++|++++|.+++++..+..+++|+.|++++|.+++.+ ..+..+++|
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 33333322 123445566666666655554444566666666666666666532 245556666
Q ss_pred CCC
Q 039599 290 ESL 292 (293)
Q Consensus 290 ~~l 292 (293)
+.|
T Consensus 424 ~~L 426 (570)
T 2z63_A 424 IYL 426 (570)
T ss_dssp CEE
T ss_pred CEE
Confidence 544
No 32
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=3.6e-26 Score=212.75 Aligned_cols=176 Identities=23% Similarity=0.261 Sum_probs=86.1
Q ss_pred CCEEEeccCccccccccccccccccceecccccccCCCCC-hhhhccccCCceecCCCcccccCCCcccccccCceecCC
Q 039599 116 LKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFP-ESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFS 194 (293)
Q Consensus 116 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 194 (293)
|++|++++|.+.+..+..+..+++|++|++++|.+.+.++ ..+..+++|++|++++|.+.+..+..|..+++|+.|+++
T Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~ 462 (680)
T 1ziw_A 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence 3333334443333334445555566666666655544333 445555556666666655544444444444555555554
Q ss_pred CC-----ccccccccCccccceecccCCCccCCCC--cC--CCCccCccc------------------ccCCccccceee
Q 039599 195 EL-----DNLSDNIGNFKSFEYMGAHGSAISQLPS--LS--SGLVPLSAS------------------LLSGLSLLYWLH 247 (293)
Q Consensus 195 ~~-----~~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~--~~l~~l~~~------------------~~~~~~~L~~L~ 247 (293)
++ +..|..+..+++|+.|++++|.+.++|. +. ..++.|+++ .++++++|++|+
T Consensus 463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 542 (680)
T 1ziw_A 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542 (680)
T ss_dssp TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE
Confidence 44 1234444555555555555555555422 11 233333321 134445556666
Q ss_pred cCCccCCcCCc-ccCCCCCCcEEeccCCcCCCCchh-HhhcccCCC
Q 039599 248 LNNCALTSIPQ-EIGYLSSLEWLHLRGNNLEGLPAS-IKQISRLES 291 (293)
Q Consensus 248 l~~n~i~~l~~-~~~~~~~L~~L~l~~n~l~~~p~~-l~~l~~L~~ 291 (293)
+++|.++.+|. .+..+++|+.|++++|+++++|+. +..+++|+.
T Consensus 543 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 588 (680)
T 1ziw_A 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCE
Confidence 66665555543 345555555555555555554433 334444443
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=5.1e-26 Score=198.23 Aligned_cols=253 Identities=15% Similarity=0.106 Sum_probs=189.6
Q ss_pred CCccccEEEEeccceeeecc--c----ceEEEeccCCcccccCCCCCCC-cCceEEeecCCcCCcccCCC---CCCccEE
Q 039599 27 NMSNLRVLKFYIPEISVHMS--I----EEQLLDSKGCKILRSFPSNLHF-VSPVTIDFTSCINLTDFPHI---SGNITRL 96 (293)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~--~----~l~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~---~~~L~~L 96 (293)
.++++++++++++.+...+. + .|++|++++|.+....+..+.. .+|++|++++|.+....|.. +.+|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46899999999998874442 1 2999999999877666656654 49999999999955444443 4579999
Q ss_pred ecccccccccCcc-ccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCccc
Q 039599 97 YLDETAIEEVPSS-IKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTIT 175 (293)
Q Consensus 97 ~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 175 (293)
++++|.+..+|+. +..+++|++|++++|.+....+..+..+++|++|++++|.+.+. .+..+++|++|++++|.++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 9999999999885 58899999999999988776677788999999999999977653 2455667777777776654
Q ss_pred ccC-CCc---------------ccccccCceecCCCC-ccccccccCccccceecccCCCccCC-CCcCCCCccCccccc
Q 039599 176 EQR-PSS---------------FENVKGLETLGFSEL-DNLSDNIGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSASLL 237 (293)
Q Consensus 176 ~~~-~~~---------------~~~~~~L~~L~l~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~~~ 237 (293)
+.. +.. ....++|+.|++++| -.-...+..+++|++|++++|.+.+. |. .+
T Consensus 200 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-----------~~ 268 (390)
T 3o6n_A 200 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYH-----------PF 268 (390)
T ss_dssp EEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESG-----------GG
T ss_pred ccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChh-----------Hc
Confidence 310 000 011235555555555 11123455566666666666666555 32 36
Q ss_pred CCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCchhHhhcccCCCCC
Q 039599 238 SGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293 (293)
Q Consensus 238 ~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~ld 293 (293)
..+++|++|++++|.++++|..+..+++|+.|++++|+++++|..+..+++|+.||
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 324 (390)
T ss_dssp TTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEE
T ss_pred cccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEE
Confidence 78899999999999999988878889999999999999999998898888888764
No 34
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=3.2e-26 Score=194.84 Aligned_cols=209 Identities=26% Similarity=0.419 Sum_probs=186.0
Q ss_pred cCceEEeecCCcCCcccCCCC---CCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceeccc
Q 039599 70 VSPVTIDFTSCINLTDFPHIS---GNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAY 146 (293)
Q Consensus 70 ~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 146 (293)
.+++.|++++|. ++.+|..+ .+|++|++++|.+..+|..++.+++|++|++++|.+. .+|..+..+++|++|+++
T Consensus 81 ~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCC-chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 589999999999 55787654 4899999999999999999999999999999999877 678889999999999999
Q ss_pred ccccCCCCChhhhc---------cccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceeccc
Q 039599 147 GCLNLERFPESLEK---------MEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAH 215 (293)
Q Consensus 147 ~~~~~~~~~~~~~~---------l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~ 215 (293)
+|...+.+|..+.. +++|++|++++|.++ .+|..+..+++|+.|++++| ..++..+..+++|++|+++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence 99898888887664 999999999999996 78888999999999999999 6677789999999999999
Q ss_pred CCCccCC-CCcCCCCccCcccccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCCC-CchhHhhcccCCCC
Q 039599 216 GSAISQL-PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLEG-LPASIKQISRLESL 292 (293)
Q Consensus 216 ~~~~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~-~p~~l~~l~~L~~l 292 (293)
+|.+.+. |. .++++++|++|++++|.+.+ +|..+..+++|+.|++++|++.+ +|+.+..+++|+.+
T Consensus 238 ~n~~~~~~p~-----------~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 238 GCTALRNYPP-----------IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306 (328)
T ss_dssp TCTTCCBCCC-----------CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred CCcchhhhHH-----------HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence 9887665 55 36788999999999997666 99899999999999999998876 99999999988754
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=9.3e-26 Score=210.00 Aligned_cols=272 Identities=17% Similarity=0.118 Sum_probs=195.0
Q ss_pred ceEEEEeecCcccceeechhhccCCccccEEEEeccceeeec--cc----ceEEEeccCCcccccCCCCCC-CcCceEEe
Q 039599 4 AIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM--SI----EEQLLDSKGCKILRSFPSNLH-FVSPVTID 76 (293)
Q Consensus 4 ~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~----~l~~L~l~~~~~~~~~~~~~~-~~~L~~L~ 76 (293)
.++.+ |+++|....+++..|.++++|++|++++|.+.... .+ .|++|++++|.+....+..+. +.+|++|+
T Consensus 26 ~l~~L--~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 26 NITVL--NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TCSEE--ECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCcEE--ECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 34555 88888888888888999999999999988876432 12 289999999876544333454 45999999
Q ss_pred ecCCcCCcccCCC---CCCccEEecccccccccC-ccccCCCCCCEEEeccCccccccccccc--cccccceeccccccc
Q 039599 77 FTSCINLTDFPHI---SGNITRLYLDETAIEEVP-SSIKCLTNLKLLRINRCTRLKRVSTSIC--KLKSLIALSAYGCLN 150 (293)
Q Consensus 77 l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~ 150 (293)
+++|.+....|.. +.+|++|++++|.+...+ ..+.++++|++|++++|.+.+..+..+. .+++|++|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 9998854333333 357888899999887554 4678889999999999877665554443 457889999988877
Q ss_pred CCCCChhhhcc---------------------------ccCCceecCCCcccccCCCccccccc--CceecCCCC---cc
Q 039599 151 LERFPESLEKM---------------------------EHLNQINLGRTTITEQRPSSFENVKG--LETLGFSEL---DN 198 (293)
Q Consensus 151 ~~~~~~~~~~l---------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~--L~~L~l~~~---~~ 198 (293)
.+..+..+..+ ++|++|++++|.+.+..+..+..++. |+.|++++| +.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 66655555443 45677777777777777777776654 888888888 33
Q ss_pred ccccccCccccceecccCCCccCC-CC-cC--CCCccCccc-------------------ccCCccccceeecCCccCCc
Q 039599 199 LSDNIGNFKSFEYMGAHGSAISQL-PS-LS--SGLVPLSAS-------------------LLSGLSLLYWLHLNNCALTS 255 (293)
Q Consensus 199 l~~~~~~l~~L~~L~l~~~~~~~~-~~-l~--~~l~~l~~~-------------------~~~~~~~L~~L~l~~n~i~~ 255 (293)
.+..+..+++|++|++++|.+.+. |. +. ..++.|++. .+..+++|++|++++|.+++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 345677888888898888888776 33 22 444444442 35567788888888888877
Q ss_pred -CCcccCCCCCCcEEeccCCcCC
Q 039599 256 -IPQEIGYLSSLEWLHLRGNNLE 277 (293)
Q Consensus 256 -l~~~~~~~~~L~~L~l~~n~l~ 277 (293)
.+..+..+++|+.|++++|.+.
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~ 366 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTS 366 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSC
T ss_pred CChhHhccccCCcEEECCCCchh
Confidence 4456778888888888888754
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=2e-25 Score=198.02 Aligned_cols=200 Identities=13% Similarity=0.147 Sum_probs=146.4
Q ss_pred ceEEEEeecCcccceeechhhccCCccccEEEEeccceeeecccc----eEEEeccCCcccccCCCCCCCcCceEEeecC
Q 039599 4 AIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIE----EQLLDSKGCKILRSFPSNLHFVSPVTIDFTS 79 (293)
Q Consensus 4 ~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 79 (293)
+++.+ |++++...+++ .+..+++|++|++++|.+...+ +. |++|++++|.+.+. + .-.+++|++|++++
T Consensus 43 ~L~~L--~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 43 TLTSL--DCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNL-D-VTPLTKLTYLNCDT 115 (457)
T ss_dssp TCCEE--ECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECCS
T ss_pred CCCEE--EccCCCcccCh--hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCcee-e-cCCCCcCCEEECCC
Confidence 34445 88988777764 6889999999999999887543 22 99999999986553 3 33455999999999
Q ss_pred CcCCcccC-CCCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhh
Q 039599 80 CINLTDFP-HISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESL 158 (293)
Q Consensus 80 ~~~~~~~~-~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 158 (293)
|.+. .+| ..+.+|++|++++|.+..++ ++.+++|++|++++|...+.+ .+..+++|++|++++|.+.+ +| +
T Consensus 116 N~l~-~l~~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l 187 (457)
T 3bz5_A 116 NKLT-KLDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--V 187 (457)
T ss_dssp SCCS-CCCCTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--C
T ss_pred CcCC-eecCCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--c
Confidence 9844 444 34568899999999988764 778888888888888655544 35677888888888886655 33 6
Q ss_pred hccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCC
Q 039599 159 EKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLP 223 (293)
Q Consensus 159 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~ 223 (293)
..+++|++|++++|.+++. .+..+++|+.|++++| ..+| +..+++|+.|++++|.+.++|
T Consensus 188 ~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 188 SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC
Confidence 6777788888888777553 3666777777777777 4444 667777777777777776663
No 37
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.7e-25 Score=199.35 Aligned_cols=273 Identities=17% Similarity=0.276 Sum_probs=164.3
Q ss_pred eEEEEeecCcccceeechhhccCCccccEEEEeccceeeecccc----eEEEeccCCcccccCCCCCCCcCceEEeecCC
Q 039599 5 IESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIE----EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSC 80 (293)
Q Consensus 5 ~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 80 (293)
++.+ +++++....++ .+..+++|++|++++|.+...+.+. |++|++++|.+.+..+ .-.+++|++|++++|
T Consensus 48 l~~L--~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 48 VTTL--QADRLGIKSID--GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN 122 (466)
T ss_dssp CCEE--ECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred ccEE--ecCCCCCccCc--chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC
Confidence 3444 67777666555 4777888888888888876444333 8888888887655433 334458888888888
Q ss_pred cCCcccC--CCCCCccEEecccccccccCc--------------------cccCCCCCCEEEeccCcccccccccccccc
Q 039599 81 INLTDFP--HISGNITRLYLDETAIEEVPS--------------------SIKCLTNLKLLRINRCTRLKRVSTSICKLK 138 (293)
Q Consensus 81 ~~~~~~~--~~~~~L~~L~l~~~~~~~l~~--------------------~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 138 (293)
. .+.++ ..+.+|++|++++|.+..++. .+..+++|++|++++|.+.. . ..+..++
T Consensus 123 ~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~ 199 (466)
T 1o6v_A 123 Q-ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-I-SVLAKLT 199 (466)
T ss_dssp C-CCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGGGCT
T ss_pred C-CCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC-C-hhhccCC
Confidence 7 33343 234578888888887765542 13344555555555554332 1 1244555
Q ss_pred ccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccC
Q 039599 139 SLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHG 216 (293)
Q Consensus 139 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~ 216 (293)
+|++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|+.|++++| ...+. +..+++|++|++++
T Consensus 200 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~ 274 (466)
T 1o6v_A 200 NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGA 274 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCS
T ss_pred CCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCC
Confidence 56666666554443322 45566666666666665432 34556666777777666 22222 56667777777777
Q ss_pred CCccCCCCcC--CCCccCcccc--------cCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCchhHhhc
Q 039599 217 SAISQLPSLS--SGLVPLSASL--------LSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQI 286 (293)
Q Consensus 217 ~~~~~~~~l~--~~l~~l~~~~--------~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l 286 (293)
|.+.+.+.+. +.++.|+++. ++.+++|++|++++|.+++++. +..+++|+.|++++|++++++ .+..+
T Consensus 275 n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l 352 (466)
T 1o6v_A 275 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANL 352 (466)
T ss_dssp SCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTC
T ss_pred CccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch-hhccC
Confidence 7766663321 4444444331 4455667777777776666443 556677777777777777664 46666
Q ss_pred ccCCCC
Q 039599 287 SRLESL 292 (293)
Q Consensus 287 ~~L~~l 292 (293)
++|+.|
T Consensus 353 ~~L~~L 358 (466)
T 1o6v_A 353 TNINWL 358 (466)
T ss_dssp TTCCEE
T ss_pred CCCCEE
Confidence 666654
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=2.3e-25 Score=189.77 Aligned_cols=238 Identities=19% Similarity=0.218 Sum_probs=196.0
Q ss_pred ccccEEEEeccceeeec-cc--ceEEEeccCCcccccCCCCCC-CcCceEEeecCCcCCcccCCCC---CCccEEecccc
Q 039599 29 SNLRVLKFYIPEISVHM-SI--EEQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINLTDFPHIS---GNITRLYLDET 101 (293)
Q Consensus 29 ~~L~~L~l~~~~~~~~~-~~--~l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~ 101 (293)
.+++.++++++.+...+ .+ .++.|++++|.+.+..+..+. +++|++|++++|.+....|..+ .+|++|++++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 47899999888776333 22 399999999987766555565 4599999999999655546554 57999999999
Q ss_pred cccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCC--CCChhhhccccCCceecCCCcccccCC
Q 039599 102 AIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLE--RFPESLEKMEHLNQINLGRTTITEQRP 179 (293)
Q Consensus 102 ~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~ 179 (293)
.++.+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++. +|
T Consensus 111 ~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~ 187 (330)
T 1xku_A 111 QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IP 187 (330)
T ss_dssp CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CC
T ss_pred cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CC
Confidence 9999987654 799999999998877666678899999999999997753 567789999999999999999964 55
Q ss_pred CcccccccCceecCCCC--c-cccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcC
Q 039599 180 SSFENVKGLETLGFSEL--D-NLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSI 256 (293)
Q Consensus 180 ~~~~~~~~L~~L~l~~~--~-~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l 256 (293)
..+. ++|+.|++++| . ..+..+..+++|++|++++|.+.+.+.- .+..+++|++|++++|.++.+
T Consensus 188 ~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----------~~~~l~~L~~L~L~~N~l~~l 255 (330)
T 1xku_A 188 QGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG----------SLANTPHLRELHLNNNKLVKV 255 (330)
T ss_dssp SSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT----------TGGGSTTCCEEECCSSCCSSC
T ss_pred cccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChh----------hccCCCCCCEEECCCCcCccC
Confidence 5443 78999999998 3 3467788999999999999999887320 256788999999999999999
Q ss_pred CcccCCCCCCcEEeccCCcCCCCch
Q 039599 257 PQEIGYLSSLEWLHLRGNNLEGLPA 281 (293)
Q Consensus 257 ~~~~~~~~~L~~L~l~~n~l~~~p~ 281 (293)
|.++..+++|+.|++++|+++++|.
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred ChhhccCCCcCEEECCCCcCCccCh
Confidence 9999999999999999999998664
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=2.9e-25 Score=189.39 Aligned_cols=258 Identities=16% Similarity=0.134 Sum_probs=205.6
Q ss_pred ceEEEEeecCcccceeechhhccCCccccEEEEeccceeee--cccc----eEEEeccCCcccccCCCCCCCcCceEEee
Q 039599 4 AIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVH--MSIE----EQLLDSKGCKILRSFPSNLHFVSPVTIDF 77 (293)
Q Consensus 4 ~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~----l~~L~l~~~~~~~~~~~~~~~~~L~~L~l 77 (293)
.++.+ ++++|....+++..|..+++|++|++++|.+... ..+. |++|++++|.+. .+|..+. .+|++|++
T Consensus 55 ~l~~L--~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~-~~L~~L~l 130 (332)
T 2ft3_A 55 DTTLL--DLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP-SSLVELRI 130 (332)
T ss_dssp TCCEE--ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC-TTCCEEEC
T ss_pred CCeEE--ECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc-ccCCEEEC
Confidence 34555 9999998899888999999999999999998743 2222 999999999865 5666554 79999999
Q ss_pred cCCcCCcccCC----CCCCccEEeccccccc---ccCccccCCCCCCEEEeccCccccccccccccccccceeccccccc
Q 039599 78 TSCINLTDFPH----ISGNITRLYLDETAIE---EVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLN 150 (293)
Q Consensus 78 ~~~~~~~~~~~----~~~~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 150 (293)
++|.+ +.+|. .+.+|++|++++|.++ ..+..+..+ +|++|++++|.+.. +|..+. ++|++|++++|.+
T Consensus 131 ~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i 205 (332)
T 2ft3_A 131 HDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKI 205 (332)
T ss_dssp CSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCC
T ss_pred CCCcc-CccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcC
Confidence 99984 44543 3568999999999986 345567777 99999999998665 555443 7999999999988
Q ss_pred CCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCC-cCC
Q 039599 151 LERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPS-LSS 227 (293)
Q Consensus 151 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~-l~~ 227 (293)
.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++| ..+|..+..+++|++|++++|.+++++. ...
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 8777788999999999999999998877778999999999999999 7788889999999999999999998843 211
Q ss_pred CCccCcccccCCccccceeecCCccCC--c-CCcccCCCCCCcEEeccCCc
Q 039599 228 GLVPLSASLLSGLSLLYWLHLNNCALT--S-IPQEIGYLSSLEWLHLRGNN 275 (293)
Q Consensus 228 ~l~~l~~~~~~~~~~L~~L~l~~n~i~--~-l~~~~~~~~~L~~L~l~~n~ 275 (293)
.... ....+.++.|++++|.+. + .|.++..+++|+.+++++|+
T Consensus 286 ~~~~-----~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 286 PVGF-----GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSC-----CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccc-----ccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 1100 112467899999999887 3 55678889999999999884
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.9e-25 Score=204.83 Aligned_cols=253 Identities=14% Similarity=0.089 Sum_probs=191.5
Q ss_pred CCccccEEEEeccceeeecc------cceEEEeccCCcccccCCCCCCCc-CceEEeecCCcCCcccCCC---CCCccEE
Q 039599 27 NMSNLRVLKFYIPEISVHMS------IEEQLLDSKGCKILRSFPSNLHFV-SPVTIDFTSCINLTDFPHI---SGNITRL 96 (293)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~------~~l~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~---~~~L~~L 96 (293)
.+++++.+++++|.+...+. -.|++|++++|.+.+..+..+... +|++|++++|.+....|.. +.+|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 45788999999998874432 139999999999877766666644 9999999999955544433 4589999
Q ss_pred ecccccccccCcc-ccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCccc
Q 039599 97 YLDETAIEEVPSS-IKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTIT 175 (293)
Q Consensus 97 ~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 175 (293)
++++|.+..+|+. |..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.. +..+++|++|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 9999999999885 589999999999999988877778999999999999999776532 455667777777776664
Q ss_pred ccCC-Ccc---------------cccccCceecCCCC-ccccccccCccccceecccCCCccCC-CCcCCCCccCccccc
Q 039599 176 EQRP-SSF---------------ENVKGLETLGFSEL-DNLSDNIGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSASLL 237 (293)
Q Consensus 176 ~~~~-~~~---------------~~~~~L~~L~l~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~~~ 237 (293)
+... ..+ ...++|+.|++++| -.-+..+..+++|+.|++++|.+.+. |. .+
T Consensus 206 ~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~-----------~~ 274 (597)
T 3oja_B 206 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYH-----------PF 274 (597)
T ss_dssp EEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESG-----------GG
T ss_pred cccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHH-----------Hh
Confidence 3110 000 01134555666555 11234555666666666666666655 33 36
Q ss_pred CCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCchhHhhcccCCCCC
Q 039599 238 SGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293 (293)
Q Consensus 238 ~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~ld 293 (293)
+.+++|+.|++++|.++++|..+..+++|+.|++++|.++++|..+..+++|+.||
T Consensus 275 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 330 (597)
T ss_dssp TTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEE
T ss_pred cCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEE
Confidence 78899999999999999988888889999999999999999999998899888764
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=1.8e-25 Score=212.57 Aligned_cols=283 Identities=16% Similarity=0.128 Sum_probs=219.6
Q ss_pred EEEeecCcccceeechhhccCCccccEEEEeccceeeec--ccc----eEEEeccCCcccccC-CCCCCC-cCceEEeec
Q 039599 7 SIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM--SIE----EQLLDSKGCKILRSF-PSNLHF-VSPVTIDFT 78 (293)
Q Consensus 7 ~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~----l~~L~l~~~~~~~~~-~~~~~~-~~L~~L~l~ 78 (293)
+...|.+++....++. -.+++++|++++|.+.... .+. |++|++++|.....+ |..+.. .+|++|+++
T Consensus 6 ~~~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 6 GRIAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp TEEEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred ceEEEccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 3445888888887774 3478999999999987432 222 999999999766666 566654 499999999
Q ss_pred CCcCCcccCCCC---CCccEEecccccccc-cCcc--ccCCCCCCEEEeccCccccccc-cccccccccceecccccccC
Q 039599 79 SCINLTDFPHIS---GNITRLYLDETAIEE-VPSS--IKCLTNLKLLRINRCTRLKRVS-TSICKLKSLIALSAYGCLNL 151 (293)
Q Consensus 79 ~~~~~~~~~~~~---~~L~~L~l~~~~~~~-l~~~--~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~ 151 (293)
+|.+....|..+ .+|++|++++|.+.. ++.. +..+++|++|++++|.+.+..+ ..++++++|++|++++|.+.
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 999666657654 478999999999974 4554 8899999999999998876544 56899999999999999888
Q ss_pred CCCChhhhcc--ccCCceecCCCcccccCCCccccccc------CceecCCCC---cccccccc----------------
Q 039599 152 ERFPESLEKM--EHLNQINLGRTTITEQRPSSFENVKG------LETLGFSEL---DNLSDNIG---------------- 204 (293)
Q Consensus 152 ~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~~~------L~~L~l~~~---~~l~~~~~---------------- 204 (293)
+..+..+..+ ++|+.|++++|.+.+..+..+..+.+ |+.|++++| ...+..+.
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 8888888877 89999999999998877776666555 999999988 22221111
Q ss_pred --------------------C--ccccceecccCCCccCC-CCcC---CCCccCccc----------ccCCccccceeec
Q 039599 205 --------------------N--FKSFEYMGAHGSAISQL-PSLS---SGLVPLSAS----------LLSGLSLLYWLHL 248 (293)
Q Consensus 205 --------------------~--l~~L~~L~l~~~~~~~~-~~l~---~~l~~l~~~----------~~~~~~~L~~L~l 248 (293)
. .++++.|++++|.+.+. |... +.++.|+++ .+.++++|++|++
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence 1 25789999999988777 3322 556666553 3677889999999
Q ss_pred CCccCCc-CCcccCCCCCCcEEeccCCcCCCCc-hhHhhcccCCCCC
Q 039599 249 NNCALTS-IPQEIGYLSSLEWLHLRGNNLEGLP-ASIKQISRLESLD 293 (293)
Q Consensus 249 ~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~~p-~~l~~l~~L~~ld 293 (293)
++|.+++ .|..+..+++|+.|++++|+++.++ ..+..+++|+.|+
T Consensus 322 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 368 (844)
T 3j0a_A 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD 368 (844)
T ss_dssp ESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEE
T ss_pred CCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEE
Confidence 9999888 4677888999999999999998855 4577788887653
No 42
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=6e-25 Score=194.81 Aligned_cols=253 Identities=19% Similarity=0.213 Sum_probs=167.4
Q ss_pred ecCcccceeechhhccCCccccEEEEeccceeeeccc--ceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCC
Q 039599 11 NLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSI--EEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPH 88 (293)
Q Consensus 11 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 88 (293)
++++|....++. .+++|++|++++|.+...+.. .+++|++++|.+.+ +|....+.+|++|++++|. .+.+|.
T Consensus 97 ~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~-l~~lp~ 170 (454)
T 1jl5_A 97 VASCNSLTELPE----LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNS-LKKLPD 170 (454)
T ss_dssp ECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSC-CSCCCC
T ss_pred EccCCcCCcccc----ccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCc-CcccCC
Confidence 555555444432 236788888888877643333 48999999987654 6754445599999999998 556888
Q ss_pred CCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCcee
Q 039599 89 ISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQIN 168 (293)
Q Consensus 89 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 168 (293)
...+|++|++++|.+..+| .+..+++|++|++++|.+.+ +|.. .++|++|++++|.+. .+|. +..+++|++|+
T Consensus 171 ~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~ 243 (454)
T 1jl5_A 171 LPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIY 243 (454)
T ss_dssp CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEE
T ss_pred CcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEE
Confidence 8889999999999998887 58889999999999987654 4432 247888888888665 5663 77888888888
Q ss_pred cCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCC-------------------
Q 039599 169 LGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSS------------------- 227 (293)
Q Consensus 169 l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~------------------- 227 (293)
+++|.+++ +|.. .++|+.|++++| ..++.. .++|+++++++|.+.++|.+.+
T Consensus 244 l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~ 316 (454)
T 1jl5_A 244 ADNNLLKT-LPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLP 316 (454)
T ss_dssp CCSSCCSS-CCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCC
T ss_pred CCCCcCCc-cccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCc
Confidence 88888854 4432 356777777666 333322 2455555555555554433222
Q ss_pred -CCccCcccc--c----CCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCC---CchhHhhc
Q 039599 228 -GLVPLSASL--L----SGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEG---LPASIKQI 286 (293)
Q Consensus 228 -~l~~l~~~~--~----~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~---~p~~l~~l 286 (293)
.++.|+++. + ..+++|++|++++|.++.+|. .+++|+.|++++|++++ +|.++..+
T Consensus 317 ~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 317 PSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred CcCCEEECCCCccccccccCCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 333333321 1 123556666666666666665 36777778888777776 55566555
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1.6e-25 Score=188.73 Aligned_cols=219 Identities=16% Similarity=0.200 Sum_probs=177.9
Q ss_pred eEEEeccCCcccccCCC-CC-CCcCceEEeecCCcCCcc--cC---CCCCCccEEecccccccccCccccCCCCCCEEEe
Q 039599 49 EQLLDSKGCKILRSFPS-NL-HFVSPVTIDFTSCINLTD--FP---HISGNITRLYLDETAIEEVPSSIKCLTNLKLLRI 121 (293)
Q Consensus 49 l~~L~l~~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~--~~---~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l 121 (293)
+++|++++|.+. .+|. .+ .+++|++|++++|.+... .+ ....+|++|++++|.+..+|..+..+++|++|++
T Consensus 30 l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 30 ATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred CCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEEC
Confidence 555555555543 3444 33 345999999999985422 12 2356899999999999999988999999999999
Q ss_pred ccCccccccc-cccccccccceecccccccCCCCChhhhccccCCceecCCCcccc-cCCCcccccccCceecCCCC--c
Q 039599 122 NRCTRLKRVS-TSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITE-QRPSSFENVKGLETLGFSEL--D 197 (293)
Q Consensus 122 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~~--~ 197 (293)
++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|+.|++++| .
T Consensus 109 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 188 (306)
T 2z66_A 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188 (306)
T ss_dssp TTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred CCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC
Confidence 9988766444 467889999999999998887788889999999999999999976 57788899999999999998 3
Q ss_pred c-ccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCc-CCcccCCCC-CCcEEeccCC
Q 039599 198 N-LSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLS-SLEWLHLRGN 274 (293)
Q Consensus 198 ~-l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~-~L~~L~l~~n 274 (293)
. .+..+..+++|++|++++|.+.+++.. .+..+++|++|++++|.+++ .|..+..++ +|+.|++++|
T Consensus 189 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTF----------PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCSBCCSG----------GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred CcCHHHhcCCCCCCEEECCCCccCccChh----------hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 3 366788999999999999999888441 25678999999999999988 666788874 9999999999
Q ss_pred cCCC
Q 039599 275 NLEG 278 (293)
Q Consensus 275 ~l~~ 278 (293)
+++.
T Consensus 259 ~~~~ 262 (306)
T 2z66_A 259 DFAC 262 (306)
T ss_dssp CEEC
T ss_pred Ceec
Confidence 9975
No 44
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=5.4e-25 Score=200.70 Aligned_cols=254 Identities=20% Similarity=0.212 Sum_probs=210.9
Q ss_pred ecCcc-cceeechhhccCCccccEEEEeccceeeecc----cceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcc
Q 039599 11 NLSTI-KGINLNLRAFSNMSNLRVLKFYIPEISVHMS----IEEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTD 85 (293)
Q Consensus 11 ~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 85 (293)
+++++ ......+..|..+++|++|++++|.+...+. ..+++|++++|.+. .+|. ..+++|+.|++++|.....
T Consensus 263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp EEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCB
T ss_pred hhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCccc-ccCc-ccccccCEEeCcCCccccc
Confidence 44444 3334445678889999999999998763321 24899999999865 5555 3566999999999996666
Q ss_pred cC-CCCCCccEEeccccccccc---CccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCC-hhhhc
Q 039599 86 FP-HISGNITRLYLDETAIEEV---PSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFP-ESLEK 160 (293)
Q Consensus 86 ~~-~~~~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~ 160 (293)
++ ..+.+|++|++++|.+... +..+..+++|++|++++|.+... +..+..+++|++|++++|.+.+..+ ..+..
T Consensus 341 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp CCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred cccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhc
Confidence 55 3567999999999998755 56788999999999999987664 4448899999999999998877655 56889
Q ss_pred cccCCceecCCCcccccCCCcccccccCceecCCCC----ccccccccCccccceecccCCCccCC-CCcCCCCccCccc
Q 039599 161 MEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL----DNLSDNIGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSAS 235 (293)
Q Consensus 161 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~----~~l~~~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~ 235 (293)
+++|++|++++|.+.+..+..+..+++|+.|++++| +.+|..+..+++|++|++++|.+.+. |.
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~----------- 488 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT----------- 488 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-----------
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh-----------
Confidence 999999999999998888888999999999999999 25788899999999999999999887 54
Q ss_pred ccCCccccceeecCCccCCcCC-cccCCCCCCcEEeccCCcCCC
Q 039599 236 LLSGLSLLYWLHLNNCALTSIP-QEIGYLSSLEWLHLRGNNLEG 278 (293)
Q Consensus 236 ~~~~~~~L~~L~l~~n~i~~l~-~~~~~~~~L~~L~l~~n~l~~ 278 (293)
.+..+++|++|++++|.+++++ ..+..+++|+.|++++|++++
T Consensus 489 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 489 AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 3668899999999999999955 568899999999999999986
No 45
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1.9e-24 Score=191.56 Aligned_cols=263 Identities=19% Similarity=0.236 Sum_probs=173.7
Q ss_pred ceEEEEeecCcccceeechhhccCCccccEEEEeccceeeeccc--ceEEEeccCCcccccCCCCCCCcCceEEeecCCc
Q 039599 4 AIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSI--EEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCI 81 (293)
Q Consensus 4 ~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 81 (293)
.++.+ ++++|....++ .|..+++|++|++++|.+...+.. .+++|++++|.+.+ +|....+++|++|++++|.
T Consensus 132 ~L~~L--~L~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 132 LLEYL--GVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNS 206 (454)
T ss_dssp TCCEE--ECCSSCCSSCC--CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSC
T ss_pred CCCEE--ECcCCCCCCCc--ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCc-CccccCCCCCCEEECCCCc
Confidence 34444 88888777665 588999999999999988743322 49999999997655 6654455699999999998
Q ss_pred CCcccCCCCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhcc
Q 039599 82 NLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKM 161 (293)
Q Consensus 82 ~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l 161 (293)
.+.+|....+|++|++++|.+..+|. +..+++|++|++++|.+.+ +|. ..++|++|++++|.+.+ +|.. .
T Consensus 207 -l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~ 276 (454)
T 1jl5_A 207 -LKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---P 276 (454)
T ss_dssp -CSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---C
T ss_pred -CCcCCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---c
Confidence 55577777899999999999998884 8899999999999987654 443 24789999999987664 5443 3
Q ss_pred ccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCc-cccceecccCCCccCCCCcCCCCccCcccc--
Q 039599 162 EHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNF-KSFEYMGAHGSAISQLPSLSSGLVPLSASL-- 236 (293)
Q Consensus 162 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l-~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~-- 236 (293)
++|++|++++|.+++ ++.. .++|+.|++++| ..++ .+ ++|++|++++|.+.++|...+.++.|+++.
T Consensus 277 ~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~i~----~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~ 348 (454)
T 1jl5_A 277 QSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLIELPALPPRLERLIASFNH 348 (454)
T ss_dssp TTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSEEC----CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred CcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCccc----CCcCcCCEEECCCCccccccccCCcCCEEECCCCc
Confidence 678999999998865 2211 256778888777 2222 22 477888888888777766445666666542
Q ss_pred cC----CccccceeecCCccCCc---CCcccCCC-------------CCCcEEeccCCcCCCCchhHhhcccC
Q 039599 237 LS----GLSLLYWLHLNNCALTS---IPQEIGYL-------------SSLEWLHLRGNNLEGLPASIKQISRL 289 (293)
Q Consensus 237 ~~----~~~~L~~L~l~~n~i~~---l~~~~~~~-------------~~L~~L~l~~n~l~~~p~~l~~l~~L 289 (293)
+. .+++|++|++++|.+++ +|.++..+ ++|+.|++++|+++++|..-..+..|
T Consensus 349 l~~lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 349 LAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp CSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------
T ss_pred cccccchhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence 11 35789999999999887 66677666 88999999999999954433333333
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=3.8e-24 Score=189.80 Aligned_cols=249 Identities=15% Similarity=0.131 Sum_probs=146.1
Q ss_pred ecCcccceeechhhccCCccccEEEEeccceeeecccc----eEEEeccCCcccccCCCCCCCcCceEEeecCCc-----
Q 039599 11 NLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIE----EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCI----- 81 (293)
Q Consensus 11 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~----- 81 (293)
++++|....++ +..+++|++|++++|.+...+ +. |++|++++|.+.+ ++ .-.+++|++|++++|.
T Consensus 70 ~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~l~ 143 (457)
T 3bz5_A 70 ICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTEID 143 (457)
T ss_dssp ECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSC-CC-CTTCTTCCEEECTTSCCSCCC
T ss_pred EccCCcCCeEc---cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCe-ec-CCCCCcCCEEECCCCccceec
Confidence 66666555442 556666666666666654322 21 5666666655433 22 1122355555555554
Q ss_pred ----------------CCcccC-CCCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceec
Q 039599 82 ----------------NLTDFP-HISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALS 144 (293)
Q Consensus 82 ----------------~~~~~~-~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 144 (293)
..+.++ ..+.+|++|++++|.++.+| +..+++|++|++++|.+.+. .+..+++|++|+
T Consensus 144 l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~ 218 (457)
T 3bz5_A 144 VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLD 218 (457)
T ss_dssp CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEE
T ss_pred cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEE
Confidence 233321 12335555566666655554 55566666666666654442 255666666666
Q ss_pred ccccccCCCCChhhhccccCCceecCCCcccccCCCcccccc-------cCceecCCCC---ccccccccCccccceecc
Q 039599 145 AYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVK-------GLETLGFSEL---DNLSDNIGNFKSFEYMGA 214 (293)
Q Consensus 145 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-------~L~~L~l~~~---~~l~~~~~~l~~L~~L~l 214 (293)
+++|.+.+ +| +..+++|++|++++|.+++..+..+.+++ +|+.+++++| +.+| +..+++|+.|++
T Consensus 219 Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~L 293 (457)
T 3bz5_A 219 CSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDV 293 (457)
T ss_dssp CCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCC
T ss_pred CcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEEC
Confidence 66665554 33 55666677777777766554333333222 3444555544 2222 345677777777
Q ss_pred cCCCccCC-CCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCc
Q 039599 215 HGSAISQL-PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLP 280 (293)
Q Consensus 215 ~~~~~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p 280 (293)
++|...+. |.-...++.++ ++++++|++|++++|.+++++ ++.+++|+.|++++|++++++
T Consensus 294 s~n~~l~~l~~~~~~L~~L~---l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l~ 355 (457)
T 3bz5_A 294 THNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFS 355 (457)
T ss_dssp TTCTTCCEEECTTCCCSCCC---CTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBCT
T ss_pred CCCcccceeccCCCcceEec---hhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCcc
Confidence 77764433 33224455554 567789999999999999874 888999999999999999865
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.1e-24 Score=181.83 Aligned_cols=216 Identities=16% Similarity=0.191 Sum_probs=174.3
Q ss_pred EEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCC---CCCccEEeccccccccc-CccccCCCCCCEEEeccCc
Q 039599 50 QLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHI---SGNITRLYLDETAIEEV-PSSIKCLTNLKLLRINRCT 125 (293)
Q Consensus 50 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~ 125 (293)
+.+++.++. +..+|..+ ..++++|++++|.+....+.. +.+|++|++++|.+..+ +..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~-l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQG-LQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSC-CSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCC-cccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 456666654 34556543 248999999999854433333 45899999999999877 5578899999999999987
Q ss_pred -cccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccc-
Q 039599 126 -RLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSD- 201 (293)
Q Consensus 126 -~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~- 201 (293)
+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++| ..++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 44444677889999999999999888777888999999999999999997666667888999999999998 44444
Q ss_pred cccCccccceecccCCCccCC-CCcCCCCccCcccccCCccccceeecCCccCCcCCc-ccCCCCCCcEEeccCCcCCC
Q 039599 202 NIGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQ-EIGYLSSLEWLHLRGNNLEG 278 (293)
Q Consensus 202 ~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~l~~ 278 (293)
.+..+++|++|++++|.+.+. |. .+..+++|++|++++|.+++++. .+..+++|+.|++++|++..
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~-----------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPH-----------AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTT-----------TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred HhcCccccCEEECCCCcccccCHh-----------HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 578899999999999998877 44 35678899999999999999664 58899999999999999875
No 48
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=3.2e-27 Score=199.72 Aligned_cols=241 Identities=16% Similarity=0.119 Sum_probs=176.8
Q ss_pred hccCCccccEEEEeccceeeecccc--eEEEeccCCccc-ccCCCCC--------CCcCceEEeecCCcCCcccCCC---
Q 039599 24 AFSNMSNLRVLKFYIPEISVHMSIE--EQLLDSKGCKIL-RSFPSNL--------HFVSPVTIDFTSCINLTDFPHI--- 89 (293)
Q Consensus 24 ~~~~~~~L~~L~l~~~~~~~~~~~~--l~~L~l~~~~~~-~~~~~~~--------~~~~L~~L~l~~~~~~~~~~~~--- 89 (293)
.+...++|+++++++|.+..+..+. ++.|++++|.+. ..+|..+ .+.+|++|++++|.+.+.+|..
T Consensus 38 ~~~~~~~L~~l~l~~n~l~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEEEEECTTHHHHCCTTCCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred EEccCCCceeEeecccccccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 3455667888888887773332222 777888887763 3344433 2568999999998866666654
Q ss_pred --CCCccEEecccccccccCccccCC-----CCCCEEEeccCccccccccccccccccceecccccccCCC--CChhh--
Q 039599 90 --SGNITRLYLDETAIEEVPSSIKCL-----TNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLER--FPESL-- 158 (293)
Q Consensus 90 --~~~L~~L~l~~~~~~~l~~~~~~l-----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~-- 158 (293)
+.+|++|++++|.+..+|..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 347888899999888777767666 8899999999888776667788889999999998876543 23333
Q ss_pred hccccCCceecCCCcccc--cCC-CcccccccCceecCCCC--cc-cc-ccccCccccceecccCCCccCCCCcCCCCcc
Q 039599 159 EKMEHLNQINLGRTTITE--QRP-SSFENVKGLETLGFSEL--DN-LS-DNIGNFKSFEYMGAHGSAISQLPSLSSGLVP 231 (293)
Q Consensus 159 ~~l~~L~~L~l~~n~~~~--~~~-~~~~~~~~L~~L~l~~~--~~-l~-~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~ 231 (293)
..+++|++|++++|.+++ ..+ ..+..+++|+.|++++| .. .+ ..+..+++|++|++++|.++.+|..
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~------ 271 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG------ 271 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSS------
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhh------
Confidence 778889999999998862 122 23346788999999888 22 22 3455678899999999988877651
Q ss_pred CcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCC
Q 039599 232 LSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEG 278 (293)
Q Consensus 232 l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~ 278 (293)
+. ++|++|++++|.|+++|. +..+++|+.|++++|++++
T Consensus 272 -----~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 272 -----LP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -----CC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred -----cc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 22 678999999999988876 8888999999999998875
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=9.6e-25 Score=183.99 Aligned_cols=228 Identities=19% Similarity=0.227 Sum_probs=186.6
Q ss_pred EEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCC----CCCccEEeccccccccc---CccccCCCCCCEEEecc
Q 039599 51 LLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHI----SGNITRLYLDETAIEEV---PSSIKCLTNLKLLRINR 123 (293)
Q Consensus 51 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~ 123 (293)
.+++.++. +..+|..+. .++++|++++|. ++.+|.. +.+|++|++++|.+..+ +..+..+++|++|++++
T Consensus 11 ~l~c~~~~-l~~ip~~~~-~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKG-LTSVPTGIP-SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSC-CSSCCSCCC-TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCC-cccCCCCCC-CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 34555544 345565432 489999999998 4566643 45899999999998755 56777899999999999
Q ss_pred CccccccccccccccccceecccccccCCCCC-hhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--c--c
Q 039599 124 CTRLKRVSTSICKLKSLIALSAYGCLNLERFP-ESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--D--N 198 (293)
Q Consensus 124 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~--~ 198 (293)
|.+. .++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++| . .
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 9865 466678899999999999998776554 57889999999999999998888888999999999999999 2 4
Q ss_pred ccccccCccccceecccCCCccCC-CCcCCCCccCcccccCCccccceeecCCccCCcCCc-ccCCCCCCcEEeccCCcC
Q 039599 199 LSDNIGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQ-EIGYLSSLEWLHLRGNNL 276 (293)
Q Consensus 199 l~~~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~l 276 (293)
.+..+..+++|++|++++|.+.+. |. .+..+++|++|++++|.+++++. .+..+++|+.|++++|++
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPT-----------AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTT-----------TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHH-----------HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 688899999999999999999887 44 35688999999999999998654 688899999999999999
Q ss_pred CC-CchhHhhcc-cCCCCC
Q 039599 277 EG-LPASIKQIS-RLESLD 293 (293)
Q Consensus 277 ~~-~p~~l~~l~-~L~~ld 293 (293)
++ .|..+..++ +|+.||
T Consensus 236 ~~~~~~~~~~~~~~L~~L~ 254 (306)
T 2z66_A 236 MTSKKQELQHFPSSLAFLN 254 (306)
T ss_dssp CBCSSSSCCCCCTTCCEEE
T ss_pred cccCHHHHHhhhccCCEEE
Confidence 97 666677764 777653
No 50
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=1.1e-24 Score=197.98 Aligned_cols=164 Identities=18% Similarity=0.179 Sum_probs=104.5
Q ss_pred CCCCCCEEEeccCccccccc---cccccccccceecccccccCCCCC--hhhhccccCCceecCCCcccccCCCcccccc
Q 039599 112 CLTNLKLLRINRCTRLKRVS---TSICKLKSLIALSAYGCLNLERFP--ESLEKMEHLNQINLGRTTITEQRPSSFENVK 186 (293)
Q Consensus 112 ~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 186 (293)
.+++|++|++++|.+.+..| ..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.++ .+|..+..++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 410 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE 410 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccc
Confidence 45566666666665554332 224455666666666664443211 34666777777777777774 5666666777
Q ss_pred cCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccc--------cCCccccceeecCCccCCcC
Q 039599 187 GLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASL--------LSGLSLLYWLHLNNCALTSI 256 (293)
Q Consensus 187 ~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~--------~~~~~~L~~L~l~~n~i~~l 256 (293)
+|++|++++| ..++..+ .++|++|++++|.+++++.-.+.++.|+++. ...+++|++|++++|.++++
T Consensus 411 ~L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~ 488 (549)
T 2z81_A 411 KMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSV 488 (549)
T ss_dssp TCCEEECTTSCCSCCCTTS--CTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCC
T ss_pred cccEEECCCCCcccccchh--cCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCc
Confidence 7777777777 3333322 1356666666666555532123444444331 34578899999999999995
Q ss_pred -CcccCCCCCCcEEeccCCcCCC
Q 039599 257 -PQEIGYLSSLEWLHLRGNNLEG 278 (293)
Q Consensus 257 -~~~~~~~~~L~~L~l~~n~l~~ 278 (293)
|.++..+++|+.|++++|++.+
T Consensus 489 ~~~~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 489 PDGIFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp CTTGGGGCTTCCEEECCSSCBCC
T ss_pred CHHHHhcCcccCEEEecCCCccC
Confidence 4568999999999999999986
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=2.5e-25 Score=191.34 Aligned_cols=253 Identities=18% Similarity=0.144 Sum_probs=170.0
Q ss_pred ccccEEEEeccceeeec-cc--ceEEEeccCCcccccCCCCCC-CcCceEEeecCCcCCcccCCCC---CCccEEecccc
Q 039599 29 SNLRVLKFYIPEISVHM-SI--EEQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINLTDFPHIS---GNITRLYLDET 101 (293)
Q Consensus 29 ~~L~~L~l~~~~~~~~~-~~--~l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~ 101 (293)
+.....+.+++.+...+ .+ .+++|++++|.+....+..+. +++|++|++++|.+....|..+ .+|++|++++|
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 33344555555554222 12 267777777765544343443 4488888888887444334333 46788888888
Q ss_pred cccccCcc-ccCCCCCCEEEeccCccccccc-cccccccccceecccccccC-CCCChhhhccccCCceecCCCcccccC
Q 039599 102 AIEEVPSS-IKCLTNLKLLRINRCTRLKRVS-TSICKLKSLIALSAYGCLNL-ERFPESLEKMEHLNQINLGRTTITEQR 178 (293)
Q Consensus 102 ~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~ 178 (293)
.+..++.. +..+++|++|++++|.+....+ ..+..+++|++|++++|... ...+..+..+++|++|++++|.+++..
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 88877764 6778888888888876654322 35677888888888887433 333566777888888888888887777
Q ss_pred CCcccccccCceecCCCC--cccccc-ccCccccceecccCCCccCCCC--cC-----CCCccCccc-------------
Q 039599 179 PSSFENVKGLETLGFSEL--DNLSDN-IGNFKSFEYMGAHGSAISQLPS--LS-----SGLVPLSAS------------- 235 (293)
Q Consensus 179 ~~~~~~~~~L~~L~l~~~--~~l~~~-~~~l~~L~~L~l~~~~~~~~~~--l~-----~~l~~l~~~------------- 235 (293)
+..+..+++|+.|++++| ..++.. +..+++|++|++++|.+.+.+. +. ..++.+++.
T Consensus 191 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~ 270 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270 (353)
T ss_dssp TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH
Confidence 777778888888888877 344433 3347788888888888776521 11 122222211
Q ss_pred -ccCCccccceeecCCccCCcCCcc-cCCCCCCcEEeccCCcCCCCch
Q 039599 236 -LLSGLSLLYWLHLNNCALTSIPQE-IGYLSSLEWLHLRGNNLEGLPA 281 (293)
Q Consensus 236 -~~~~~~~L~~L~l~~n~i~~l~~~-~~~~~~L~~L~l~~n~l~~~p~ 281 (293)
.+..+++|++|++++|.++.+|.. +..+++|+.|++++|++.+.++
T Consensus 271 ~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 256778999999999999998876 4889999999999999987544
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=7e-24 Score=195.43 Aligned_cols=121 Identities=18% Similarity=0.147 Sum_probs=92.9
Q ss_pred eEEEEeecCcccceeechhhccCCccccEEEEeccceeeec--ccc----eEEEeccCCcccccCCCCCC-CcCceEEee
Q 039599 5 IESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM--SIE----EQLLDSKGCKILRSFPSNLH-FVSPVTIDF 77 (293)
Q Consensus 5 ~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~----l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l 77 (293)
++.+ |+++|....+++.+|.++++|++|++++|.+...+ .+. |++|++++|.+....+..+. +.+|++|++
T Consensus 54 ~~~L--dLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 54 TKNL--DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp CCEE--ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCEE--EeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 4445 99999999999889999999999999999887332 232 99999999986554444554 459999999
Q ss_pred cCCcCCcccCC----CCCCccEEecccccccc--cCccccCCCCCCEEEeccCcccc
Q 039599 78 TSCINLTDFPH----ISGNITRLYLDETAIEE--VPSSIKCLTNLKLLRINRCTRLK 128 (293)
Q Consensus 78 ~~~~~~~~~~~----~~~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~ 128 (293)
++|. ++.+|. .+.+|++|++++|.+.. +|..+..+++|++|++++|.+.+
T Consensus 132 s~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 132 VETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp TTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 9998 444543 23578899999998864 46677888999999988876543
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=7.5e-26 Score=191.75 Aligned_cols=239 Identities=12% Similarity=0.112 Sum_probs=112.8
Q ss_pred ecCcccceeechhhccCCccccEEEEeccceeeec--cc----ceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCc
Q 039599 11 NLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHM--SI----EEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLT 84 (293)
Q Consensus 11 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~----~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 84 (293)
+++.+.........+..+++|++|++++|.+.... .+ .|++|++++|.+.+..+ .-.+++|++|++++|
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n---- 90 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN---- 90 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS----
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC----
Confidence 44444444444445566667777777777654321 11 14555555544333222 112234555555544
Q ss_pred ccCCCCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccC
Q 039599 85 DFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHL 164 (293)
Q Consensus 85 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 164 (293)
.+..++. .++|++|++++|.+....+. .+++|++|++++|.+.+..+..+..+++|
T Consensus 91 -----------------~l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L 146 (317)
T 3o53_A 91 -----------------YVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV 146 (317)
T ss_dssp -----------------EEEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSE
T ss_pred -----------------ccccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCC
Confidence 4443331 14444555544443332221 23444555555544443333344444555
Q ss_pred CceecCCCcccccCCCccc-ccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCcc
Q 039599 165 NQINLGRTTITEQRPSSFE-NVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLS 241 (293)
Q Consensus 165 ~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~ 241 (293)
++|++++|.+++..+..+. .+++|++|++++| ..++ ....+++|++|++++|.+.++|. .+..++
T Consensus 147 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~l~~L~~L~Ls~N~l~~l~~-----------~~~~l~ 214 (317)
T 3o53_A 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLAFMGP-----------EFQSAA 214 (317)
T ss_dssp EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE-CCCCCTTCCEEECCSSCCCEECG-----------GGGGGT
T ss_pred CEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc-cccccccCCEEECCCCcCCcchh-----------hhcccC
Confidence 5555555554433333332 3445555555554 2222 12235555555555555555432 133455
Q ss_pred ccceeecCCccCCcCCcccCCCCCCcEEeccCCcCC-C-CchhHhhcccCC
Q 039599 242 LLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLE-G-LPASIKQISRLE 290 (293)
Q Consensus 242 ~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~-~-~p~~l~~l~~L~ 290 (293)
+|++|++++|.++.+|..+..+++|+.|++++|+++ + +|.++..+++|+
T Consensus 215 ~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~ 265 (317)
T 3o53_A 215 GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (317)
T ss_dssp TCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred cccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence 566666666666555555555666666666666665 2 455555444443
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=8.1e-25 Score=188.13 Aligned_cols=214 Identities=13% Similarity=0.100 Sum_probs=114.2
Q ss_pred cccEEEEeccceeeecc--cc----eEEEeccCCcccccCCCCCCC-cCceEEeecCCcCCcccCC----CCCCccEEec
Q 039599 30 NLRVLKFYIPEISVHMS--IE----EQLLDSKGCKILRSFPSNLHF-VSPVTIDFTSCINLTDFPH----ISGNITRLYL 98 (293)
Q Consensus 30 ~L~~L~l~~~~~~~~~~--~~----l~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l 98 (293)
+|++|++++|.+...+. +. |++|++++|.+.+..+..+.. ++|++|++++|.+ +.+|. .+.+|++|++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SSCCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC-CcCCHhHhCCCccCCEEEC
Confidence 45555555554442211 11 555555555444433333332 2555555555542 22321 2334555555
Q ss_pred ccccccccCc--cccCCCCCCEEEeccCcccc-ccccccccccccceecccccccCCCCChhhhccccCCceecCCCccc
Q 039599 99 DETAIEEVPS--SIKCLTNLKLLRINRCTRLK-RVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTIT 175 (293)
Q Consensus 99 ~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 175 (293)
++|.+..+|. .+..+++|++|++++|.... ..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 5555555444 34455555555555543222 22334445555555555555444444444555555555555555442
Q ss_pred ccCCC-cccccccCceecCCCC----------------------------------ccccccccCccccceecccCCCcc
Q 039599 176 EQRPS-SFENVKGLETLGFSEL----------------------------------DNLSDNIGNFKSFEYMGAHGSAIS 220 (293)
Q Consensus 176 ~~~~~-~~~~~~~L~~L~l~~~----------------------------------~~l~~~~~~l~~L~~L~l~~~~~~ 220 (293)
. ++. .+..+++|+.|++++| ..++..+..+++|++|++++|.+.
T Consensus 212 ~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 212 L-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp T-HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred c-chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 2 222 1223444444444444 134566788999999999999999
Q ss_pred CCCCcCCCCccCcccccCCccccceeecCCccCCc
Q 039599 221 QLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS 255 (293)
Q Consensus 221 ~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~ 255 (293)
.+|.. .+..+++|++|++++|.++.
T Consensus 291 ~i~~~----------~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 291 SVPDG----------IFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCCTT----------TTTTCTTCCEEECCSSCBCC
T ss_pred ccCHH----------HHhcCCCCCEEEeeCCCccC
Confidence 88651 14688999999999998876
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.8e-23 Score=191.13 Aligned_cols=254 Identities=20% Similarity=0.206 Sum_probs=172.2
Q ss_pred eecCcccceeechhhccCCccccEEEEeccceeeecc-c-ceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccC
Q 039599 10 LNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMS-I-EEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFP 87 (293)
Q Consensus 10 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~-~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 87 (293)
++++++....++. .+. ++|++|++++|.+...+. . .|++|++++|.+. .+|. ..++|++|++++|. ++.+|
T Consensus 45 L~ls~n~L~~lp~-~l~--~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~-~lp~--~l~~L~~L~Ls~N~-l~~l~ 117 (622)
T 3g06_A 45 LNVGESGLTTLPD-CLP--AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPV--LPPGLLELSIFSNP-LTHLP 117 (622)
T ss_dssp EECCSSCCSCCCS-CCC--TTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCS-CCCC--CCTTCCEEEECSCC-CCCCC
T ss_pred EEecCCCcCccCh-hhC--CCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCC-cCCC--CCCCCCEEECcCCc-CCCCC
Confidence 3888887777765 333 789999999998874332 2 3999999998754 4565 45689999999988 66677
Q ss_pred CCCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCce
Q 039599 88 HISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQI 167 (293)
Q Consensus 88 ~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 167 (293)
..+.+|++|++++|.+..+|.. +++|++|++++|.+.. +|. ...+|+.|++++|.+.. +| ..+++|+.|
T Consensus 118 ~~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L 186 (622)
T 3g06_A 118 ALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQEL 186 (622)
T ss_dssp CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEE
T ss_pred CCCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEE
Confidence 7778899999999998888864 4789999999887654 333 34567777777775543 44 345677777
Q ss_pred ecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccc--c----CC
Q 039599 168 NLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASL--L----SG 239 (293)
Q Consensus 168 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~--~----~~ 239 (293)
++++|.+++ +|.. .++|+.|++++| ..++. ..++|+.|++++|.++++|...+.++.|+++. + ..
T Consensus 187 ~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~lp~~ 259 (622)
T 3g06_A 187 SVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPML 259 (622)
T ss_dssp ECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC
T ss_pred ECCCCCCCC-CCCc---cchhhEEECcCCcccccCC---CCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCcCCcc
Confidence 777777753 3332 356667777666 33332 23566677777776666654333444444321 1 13
Q ss_pred ccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCC-CchhHhhccc
Q 039599 240 LSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEG-LPASIKQISR 288 (293)
Q Consensus 240 ~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~-~p~~l~~l~~ 288 (293)
+++|+.|++++|.|+.+|..+..+++|+.|++++|++++ .|..+..++.
T Consensus 260 ~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 260 PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp CTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred cccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence 456788888888887777777778888888888888876 5555555443
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=7.1e-24 Score=176.92 Aligned_cols=197 Identities=16% Similarity=0.177 Sum_probs=131.7
Q ss_pred eEEEeccCCcccccCCCCCC-CcCceEEeecCCcCCcccCCC---CCCccEEeccccc-cccc-CccccCCCCCCEEEec
Q 039599 49 EQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINLTDFPHI---SGNITRLYLDETA-IEEV-PSSIKCLTNLKLLRIN 122 (293)
Q Consensus 49 l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~-~~~l-~~~~~~l~~L~~L~l~ 122 (293)
+++|++++|.+....+..+. +++|++|++++|.+....|.. +.+|++|++++|. +..+ +..+..+++|++|+++
T Consensus 34 l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~ 113 (285)
T 1ozn_A 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113 (285)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred ceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECC
Confidence 77777777776554444444 347777777777644333433 3467777777776 6666 4466777777777777
Q ss_pred cCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC---ccc
Q 039599 123 RCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL---DNL 199 (293)
Q Consensus 123 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l 199 (293)
+|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++| +..
T Consensus 114 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 193 (285)
T 1ozn_A 114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193 (285)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC
Confidence 77766655666677777777777777666555556777777777777777776555555677777777777777 233
Q ss_pred cccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCc
Q 039599 200 SDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS 255 (293)
Q Consensus 200 ~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~ 255 (293)
+..+..+++|+.|++++|.+.++|. ..+..+++|++|++++|.+..
T Consensus 194 ~~~~~~l~~L~~L~l~~n~l~~~~~----------~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 194 PHAFRDLGRLMTLYLFANNLSALPT----------EALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCH----------HHHTTCTTCCEEECCSSCEEC
T ss_pred HhHccCcccccEeeCCCCcCCcCCH----------HHcccCcccCEEeccCCCccC
Confidence 5666777777777777777776642 024566777777777776654
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=1.7e-23 Score=185.78 Aligned_cols=233 Identities=20% Similarity=0.192 Sum_probs=185.4
Q ss_pred cEEEEeccceeeec-cc--ceEEEeccCCcccccCCCCCCC-cCceEEeecCCcCCcccCCC---CCCccEEeccccccc
Q 039599 32 RVLKFYIPEISVHM-SI--EEQLLDSKGCKILRSFPSNLHF-VSPVTIDFTSCINLTDFPHI---SGNITRLYLDETAIE 104 (293)
Q Consensus 32 ~~L~l~~~~~~~~~-~~--~l~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~ 104 (293)
..++.++..+...+ .+ .+++|++++|.+....+..+.. ++|++|++++|.+....+.. +.+|++|++++|.+.
T Consensus 57 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 136 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136 (452)
T ss_dssp CEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred cEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC
Confidence 45555555444222 22 3888999998877766776654 49999999999855444443 458999999999999
Q ss_pred ccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCCh-hhhccccCCceecCCCcccccCCCcc
Q 039599 105 EVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPE-SLEKMEHLNQINLGRTTITEQRPSSF 182 (293)
Q Consensus 105 ~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~ 182 (293)
.+++ .+..+++|++|++++|.+....+..+..+++|++|++++|...+.++. .+..+++|++|++++|.+++ +| .+
T Consensus 137 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~ 214 (452)
T 3zyi_A 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NL 214 (452)
T ss_dssp BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CC
T ss_pred ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cc
Confidence 8887 478899999999999987765556788999999999999766666654 58899999999999999964 34 57
Q ss_pred cccccCceecCCCC---ccccccccCccccceecccCCCccCC-CCcCCCCccCcccccCCccccceeecCCccCCcCCc
Q 039599 183 ENVKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQ 258 (293)
Q Consensus 183 ~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~ 258 (293)
..+++|+.|++++| +..+..+..+++|+.|++++|.+..+ |. .+.++++|++|++++|.++.+|.
T Consensus 215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----------~~~~l~~L~~L~L~~N~l~~~~~ 283 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN-----------AFDGLASLVELNLAHNNLSSLPH 283 (452)
T ss_dssp TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT-----------TTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH-----------HhcCCCCCCEEECCCCcCCccCh
Confidence 78899999999999 34477888999999999999998887 33 36688999999999999998664
Q ss_pred -ccCCCCCCcEEeccCCcCC
Q 039599 259 -EIGYLSSLEWLHLRGNNLE 277 (293)
Q Consensus 259 -~~~~~~~L~~L~l~~n~l~ 277 (293)
.+..+++|+.|++++|++.
T Consensus 284 ~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 284 DLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TSSTTCTTCCEEECCSSCEE
T ss_pred HHhccccCCCEEEccCCCcC
Confidence 5678999999999999876
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=9.3e-25 Score=195.33 Aligned_cols=222 Identities=13% Similarity=0.157 Sum_probs=138.9
Q ss_pred EEEeccCCcccccCCCCCC-CcCceEEeecCCcCCcccC-CCCCCccEEecccccccccCccccCCCCCCEEEeccCccc
Q 039599 50 QLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINLTDFP-HISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRL 127 (293)
Q Consensus 50 ~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~ 127 (293)
++|++++|.+.+..|..+. +++|++|++++|.+.+..| ..+.+|++|++++|.++.++.. ++|++|++++|.+.
T Consensus 37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~N~l~ 112 (487)
T 3oja_A 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNIS 112 (487)
T ss_dssp CEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSCCC
T ss_pred cEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC----CCcCEEECcCCcCC
Confidence 3333333433333333333 3366677776666433332 2234666777777766655432 66777777776655
Q ss_pred cccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCccc-ccccCceecCCCC--cccccccc
Q 039599 128 KRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFE-NVKGLETLGFSEL--DNLSDNIG 204 (293)
Q Consensus 128 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~~--~~l~~~~~ 204 (293)
...+. .+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+. .+++|+.|++++| ..++ ...
T Consensus 113 ~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-~~~ 188 (487)
T 3oja_A 113 RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK-GQV 188 (487)
T ss_dssp CEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE-CCC
T ss_pred CCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc-ccc
Confidence 53332 346677777777766665566666777777777777777665555554 5677777777777 3333 233
Q ss_pred CccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCC--CCchh
Q 039599 205 NFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLE--GLPAS 282 (293)
Q Consensus 205 ~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~--~~p~~ 282 (293)
.+++|+.|++++|.++++|. .+..+++|+.|++++|.++++|..+..+++|+.|++++|++. .+|.+
T Consensus 189 ~l~~L~~L~Ls~N~l~~~~~-----------~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAFMGP-----------EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CCTTCCEEECCSSCCCEECG-----------GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred cCCCCCEEECCCCCCCCCCH-----------hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 57777777787777777643 245667788888888888777777777788888888888877 36666
Q ss_pred HhhcccCC
Q 039599 283 IKQISRLE 290 (293)
Q Consensus 283 l~~l~~L~ 290 (293)
+..+++|+
T Consensus 258 ~~~l~~L~ 265 (487)
T 3oja_A 258 FSKNQRVQ 265 (487)
T ss_dssp HTTCHHHH
T ss_pred HHhCCCCc
Confidence 66655543
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=1.3e-23 Score=185.92 Aligned_cols=230 Identities=17% Similarity=0.190 Sum_probs=166.4
Q ss_pred eEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCC---CCCccEEecccccccccCc-cccCCCCCCEEEeccC
Q 039599 49 EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHI---SGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRC 124 (293)
Q Consensus 49 l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~ 124 (293)
.+.+++.+.. +..+|..+. .+++.|++++|.+....+.. +.+|++|++++|.+..++. .|.++++|++|++++|
T Consensus 45 ~~~v~c~~~~-l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKN-LREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCC-CSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCC-cCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 3456665544 445665543 48888999988844433333 4578888999998887764 6788899999999988
Q ss_pred ccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCc-ccccCCCcccccccCceecCCCC--ccccc
Q 039599 125 TRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTT-ITEQRPSSFENVKGLETLGFSEL--DNLSD 201 (293)
Q Consensus 125 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~~--~~l~~ 201 (293)
.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|. +....+..|..+++|+.|++++| ..++
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~- 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP- 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-
Confidence 7766555567888899999999887766556678888899999998854 43333346778889999999888 4555
Q ss_pred cccCccccceecccCCCccCC-CCcCCCCccCcccccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCCCC
Q 039599 202 NIGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLEGL 279 (293)
Q Consensus 202 ~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~~ 279 (293)
.+..+++|++|++++|.+.++ |. .+.++++|++|++++|.+++ .+.++..+++|+.|++++|+++++
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~-----------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPG-----------SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTT-----------TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred ccCCCcccCEEECCCCccCccChh-----------hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence 467888899999999988877 43 25567777778888777777 445677777788888888877775
Q ss_pred ch-hHhhcccCCCC
Q 039599 280 PA-SIKQISRLESL 292 (293)
Q Consensus 280 p~-~l~~l~~L~~l 292 (293)
|. .+..+++|+.|
T Consensus 271 ~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 271 PHDLFTPLHHLERI 284 (440)
T ss_dssp CTTTTSSCTTCCEE
T ss_pred ChhHhccccCCCEE
Confidence 53 34556666554
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=1.4e-23 Score=186.28 Aligned_cols=230 Identities=18% Similarity=0.177 Sum_probs=162.7
Q ss_pred EEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCC---CCCccEEecccccccccC-ccccCCCCCCEEEeccCc
Q 039599 50 QLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHI---SGNITRLYLDETAIEEVP-SSIKCLTNLKLLRINRCT 125 (293)
Q Consensus 50 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~ 125 (293)
..+++.+.. +..+|..+. .+++.|++++|.+....|.. +.+|++|++++|.+..++ ..|.++++|++|++++|.
T Consensus 57 ~~v~c~~~~-l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 57 SKVVCTRRG-LSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp CEEECCSSC-CSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cEEEECCCC-cCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 445555543 334554432 47788888887744433433 346777788888877665 367778888888888877
Q ss_pred cccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCC-CcccccccCceecCCCC--cccccc
Q 039599 126 RLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRP-SSFENVKGLETLGFSEL--DNLSDN 202 (293)
Q Consensus 126 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~--~~l~~~ 202 (293)
+....+..+..+++|++|++++|.+....+..+..+++|++|++++|...+.++ ..|..+++|+.|++++| ..++ .
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~ 213 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-N 213 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-C
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-c
Confidence 665445556777888888888876665555567778888888887743323333 35677788888888877 3443 4
Q ss_pred ccCccccceecccCCCccCC-CCcCCCCccCcccccCCccccceeecCCccCCc-CCcccCCCCCCcEEeccCCcCCCCc
Q 039599 203 IGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGNNLEGLP 280 (293)
Q Consensus 203 ~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~l~~~p 280 (293)
+..+++|++|++++|.+.++ |. .+.++++|+.|++++|.++. .+..+..+++|+.|++++|+++++|
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~-----------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPG-----------SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGG-----------GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ccccccccEEECcCCcCcccCcc-----------cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 66777888888888877766 33 36788999999999999998 5677899999999999999999966
Q ss_pred h-hHhhcccCCCCC
Q 039599 281 A-SIKQISRLESLD 293 (293)
Q Consensus 281 ~-~l~~l~~L~~ld 293 (293)
. .+..+++|+.|+
T Consensus 283 ~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 283 HDLFTPLRYLVELH 296 (452)
T ss_dssp TTSSTTCTTCCEEE
T ss_pred hHHhccccCCCEEE
Confidence 4 456678887653
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=2.3e-23 Score=184.27 Aligned_cols=234 Identities=18% Similarity=0.150 Sum_probs=185.1
Q ss_pred cEEEEeccceeee-ccc--ceEEEeccCCcccccCCCCCC-CcCceEEeecCCcCCcccCC---CCCCccEEeccccccc
Q 039599 32 RVLKFYIPEISVH-MSI--EEQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINLTDFPH---ISGNITRLYLDETAIE 104 (293)
Q Consensus 32 ~~L~l~~~~~~~~-~~~--~l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~~~ 104 (293)
..++..+..+... ..+ .++.|++++|.+....+..+. +.+|++|++++|.+....+. .+.+|++|++++|.+.
T Consensus 46 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125 (440)
T ss_dssp CEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC
Confidence 4455555444422 222 288888888887666666665 44999999999984433222 3568999999999999
Q ss_pred ccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCCh-hhhccccCCceecCCCcccccCCCcc
Q 039599 105 EVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPE-SLEKMEHLNQINLGRTTITEQRPSSF 182 (293)
Q Consensus 105 ~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~ 182 (293)
.++. .+..+++|++|++++|.+....+..+..+++|++|++++|...+.++. .+..+++|++|++++|.++ .+| .+
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~ 203 (440)
T 3zyj_A 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NL 203 (440)
T ss_dssp SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CC
T ss_pred eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-cc
Confidence 8887 688999999999999987765566788999999999999766666654 6889999999999999996 444 47
Q ss_pred cccccCceecCCCC---ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCc-
Q 039599 183 ENVKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQ- 258 (293)
Q Consensus 183 ~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~- 258 (293)
..+++|+.|++++| ...+..+..+++|++|++++|.+..++.- .+..+++|++|++++|.++.+|.
T Consensus 204 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------~~~~l~~L~~L~L~~N~l~~~~~~ 273 (440)
T 3zyj_A 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN----------AFDNLQSLVEINLAHNNLTLLPHD 273 (440)
T ss_dssp TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT----------SSTTCTTCCEEECTTSCCCCCCTT
T ss_pred CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh----------hhcCCCCCCEEECCCCCCCccChh
Confidence 78899999999999 33467888999999999999999887321 36688999999999999999664
Q ss_pred ccCCCCCCcEEeccCCcCC
Q 039599 259 EIGYLSSLEWLHLRGNNLE 277 (293)
Q Consensus 259 ~~~~~~~L~~L~l~~n~l~ 277 (293)
.+..+++|+.|++++|++.
T Consensus 274 ~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 274 LFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTSSCTTCCEEECCSSCEE
T ss_pred HhccccCCCEEEcCCCCcc
Confidence 5688999999999999875
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=8.8e-23 Score=186.63 Aligned_cols=216 Identities=15% Similarity=0.079 Sum_probs=125.8
Q ss_pred ecCcccceeechhhccCCccccEEEEeccceeeecc-c-ceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCC
Q 039599 11 NLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMS-I-EEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPH 88 (293)
Q Consensus 11 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~-~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 88 (293)
++++|....++. .+++|++|++++|.+...+. + .|++|++++|.+.. +|. ...+|+.|++++|. ++.+|.
T Consensus 67 ~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~-l~~--~l~~L~~L~L~~N~-l~~lp~ 138 (622)
T 3g06_A 67 VIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH-LPA--LPSGLCKLWIFGNQ-LTSLPV 138 (622)
T ss_dssp EECSCCCSCCCC----CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCC-CCC--CCTTCCEEECCSSC-CSCCCC
T ss_pred EecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCC-CCC--CCCCcCEEECCCCC-CCcCCC
Confidence 778887666664 46788888888887763322 2 28888888876443 344 33477777777776 555666
Q ss_pred CCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhh----------
Q 039599 89 ISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESL---------- 158 (293)
Q Consensus 89 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~---------- 158 (293)
.+.+|++|++++|.+..+|.. +++|+.|++++|.+.. +| ..+++|+.|++++|.+.+ +|..+
T Consensus 139 ~l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~ 210 (622)
T 3g06_A 139 LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYN 210 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCS
T ss_pred CCCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCccchhhEEECcC
Confidence 667777777777777666542 2455555555554433 23 234455555555554332 22211
Q ss_pred -------hccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCC
Q 039599 159 -------EKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGL 229 (293)
Q Consensus 159 -------~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l 229 (293)
..+++|++|++++|.+++ +| ..+++|+.|++++| ..+|. .+++|+.|++++|.+..+|.
T Consensus 211 N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~----- 278 (622)
T 3g06_A 211 NRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPE----- 278 (622)
T ss_dssp SCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCG-----
T ss_pred CcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCH-----
Confidence 012445555555555532 22 22345555555555 33333 34455555555555554443
Q ss_pred ccCcccccCCccccceeecCCccCCc-CCccc
Q 039599 230 VPLSASLLSGLSLLYWLHLNNCALTS-IPQEI 260 (293)
Q Consensus 230 ~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~ 260 (293)
.+..+++|+.|++++|.+++ .|..+
T Consensus 279 ------~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 279 ------SLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp ------GGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred ------HHhhccccCEEEecCCCCCCcCHHHH
Confidence 36688999999999999987 55444
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=7.5e-26 Score=191.33 Aligned_cols=229 Identities=14% Similarity=0.151 Sum_probs=181.7
Q ss_pred eEEEeccCCcccccCCCCCCCcCceEEeecCCcCC-cccCC----------CCCCccEEeccccccc-ccCccc--cCCC
Q 039599 49 EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINL-TDFPH----------ISGNITRLYLDETAIE-EVPSSI--KCLT 114 (293)
Q Consensus 49 l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~----------~~~~L~~L~l~~~~~~-~l~~~~--~~l~ 114 (293)
++++++++|.+ .+|..+.. .|+.|++++|.+. ..+|. .+.+|++|++++|.+. .+|..+ ..++
T Consensus 45 L~~l~l~~n~l--~~p~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 121 (312)
T 1wwl_A 45 LEYLLKRVDTE--ADLGQFTD-IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121 (312)
T ss_dssp CTTHHHHCCTT--CCCHHHHH-HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred ceeEeeccccc--ccHHHHHH-HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence 77788888876 55654322 3778888887752 23443 3678999999999997 677765 8899
Q ss_pred CCCEEEeccCccccccccccccc-----cccceecccccccCCCCChhhhccccCCceecCCCccccc--CCCcc--ccc
Q 039599 115 NLKLLRINRCTRLKRVSTSICKL-----KSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQ--RPSSF--ENV 185 (293)
Q Consensus 115 ~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~--~~~ 185 (293)
+|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+ ..+
T Consensus 122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 999999999988776 7777776 8999999999988887778999999999999999987654 23333 788
Q ss_pred ccCceecCCCC--c---ccc-ccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcc
Q 039599 186 KGLETLGFSEL--D---NLS-DNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQE 259 (293)
Q Consensus 186 ~~L~~L~l~~~--~---~l~-~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~ 259 (293)
++|++|++++| . .++ ..+..+++|++|++++|.+.+.+... .+..+++|++|++++|.|+.+|..
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---------~~~~l~~L~~L~Ls~N~l~~ip~~ 271 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP---------SCDWPSQLNSLNLSFTGLKQVPKG 271 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS---------CCCCCTTCCEEECTTSCCSSCCSS
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh---------hhhhcCCCCEEECCCCccChhhhh
Confidence 99999999999 3 222 23457899999999999998863100 144678999999999999999987
Q ss_pred cCCCCCCcEEeccCCcCCCCchhHhhcccCCCCC
Q 039599 260 IGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293 (293)
Q Consensus 260 ~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~ld 293 (293)
+. ++|+.|++++|+++++|. +..+++|+.||
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~ 302 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLS 302 (312)
T ss_dssp CC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEE
T ss_pred cc--CCceEEECCCCCCCCChh-HhhCCCCCEEe
Confidence 76 899999999999999987 88888887653
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=1.8e-24 Score=183.34 Aligned_cols=223 Identities=15% Similarity=0.106 Sum_probs=175.4
Q ss_pred EEEeccCCcccccCCCCCC-CcCceEEeecCCcCCcccC---CCCCCccEEecccccccccCccccCCCCCCEEEeccCc
Q 039599 50 QLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINLTDFP---HISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCT 125 (293)
Q Consensus 50 ~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~ 125 (293)
+..++..+.+.......+. .++|++|++++|.+....| ..+.+|++|++++|.+...++ +..+++|++|++++|.
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc
Confidence 3444555443322222222 3489999999998554333 346689999999999987665 8899999999999997
Q ss_pred cccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--cc-cccc
Q 039599 126 RLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DN-LSDN 202 (293)
Q Consensus 126 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~-l~~~ 202 (293)
+.+ + ...++|++|++++|.+.+..+. .+++|++|++++|.+++..+..+..+++|+.|++++| .. .+..
T Consensus 92 l~~-l----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 92 VQE-L----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp EEE-E----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred ccc-c----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 654 2 2448999999999977654433 3678999999999998777778889999999999999 33 3344
Q ss_pred c-cCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCch
Q 039599 203 I-GNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPA 281 (293)
Q Consensus 203 ~-~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~ 281 (293)
+ ..+++|++|++++|.+.+++. ...+++|++|++++|.++++|..+..+++|+.|++++|+++++|.
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~~~------------~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~ 231 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDVKG------------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK 231 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEEEC------------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred HhhccCcCCEEECCCCcCccccc------------ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhh
Confidence 4 478999999999999988754 235789999999999999988889999999999999999999998
Q ss_pred hHhhcccCCCCC
Q 039599 282 SIKQISRLESLD 293 (293)
Q Consensus 282 ~l~~l~~L~~ld 293 (293)
.+..+++|+.||
T Consensus 232 ~~~~l~~L~~L~ 243 (317)
T 3o53_A 232 ALRFSQNLEHFD 243 (317)
T ss_dssp TCCCCTTCCEEE
T ss_pred HhhcCCCCCEEE
Confidence 888888888764
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2e-22 Score=166.88 Aligned_cols=197 Identities=21% Similarity=0.278 Sum_probs=159.7
Q ss_pred CceEEeecCCcCCcccCCCCC-CccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceeccccc
Q 039599 71 SPVTIDFTSCINLTDFPHISG-NITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGC 148 (293)
Q Consensus 71 ~L~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 148 (293)
+.+.++++++. ++.+|..++ ++++|++++|.+..+++ .+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 17 ~~~~l~~~~~~-l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCC-CCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 56788888877 566776544 78999999999888876 6888999999999998776544455678899999999998
Q ss_pred ccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccc-cccCccccceecccCCCccCCCCc
Q 039599 149 LNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSD-NIGNFKSFEYMGAHGSAISQLPSL 225 (293)
Q Consensus 149 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~-~~~~l~~L~~L~l~~~~~~~~~~l 225 (293)
.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++| ..++. .+..+++|++|++++|.+..++.-
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 175 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh
Confidence 777666667888999999999999997777777888999999999988 44444 467889999999999999888431
Q ss_pred CCCCccCcccccCCccccceeecCCccCCcCCc-ccCCCCCCcEEeccCCcCCC
Q 039599 226 SSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQ-EIGYLSSLEWLHLRGNNLEG 278 (293)
Q Consensus 226 ~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~l~~ 278 (293)
.+..+++|++|++++|.++.+|. .+..+++|+.|++++|++..
T Consensus 176 ----------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 176 ----------AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp ----------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ----------HhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 25678899999999999998665 47789999999999998864
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=2.9e-23 Score=172.37 Aligned_cols=206 Identities=18% Similarity=0.162 Sum_probs=166.2
Q ss_pred ccCCCCCCCcCceEEeecCCcCCcccCCC---CCCccEEecccccccccCc-cccCCCCCCEEEeccCcccccccccccc
Q 039599 61 RSFPSNLHFVSPVTIDFTSCINLTDFPHI---SGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICK 136 (293)
Q Consensus 61 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 136 (293)
..+|..+. .++++|++++|.+....+.. +.+|++|++++|.+..+++ .+..+++|++|++++|.+....+..+..
T Consensus 20 ~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 20 YKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp SSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred cccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 34565442 48999999999854433323 4589999999999988776 7889999999999999887766778889
Q ss_pred ccccceecccccccCCCCChhhhccccCCceecCCCccccc-CCCcccccccCceecCCCC--ccc-cccccCccccc--
Q 039599 137 LKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQ-RPSSFENVKGLETLGFSEL--DNL-SDNIGNFKSFE-- 210 (293)
Q Consensus 137 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~~--~~l-~~~~~~l~~L~-- 210 (293)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|+.|++++| ..+ +..+..++.++
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc
Confidence 99999999999988776666789999999999999999763 5788999999999999998 333 34555666666
Q ss_pred --eecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcc-cCCCCCCcEEeccCCcCCC
Q 039599 211 --YMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQE-IGYLSSLEWLHLRGNNLEG 278 (293)
Q Consensus 211 --~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~-~~~~~~L~~L~l~~n~l~~ 278 (293)
.+++++|.+.+++.. .....+|++|++++|.++++|.. +..+++|+.|++++|+++.
T Consensus 179 ~l~L~ls~n~l~~~~~~-----------~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 179 NLSLDLSLNPMNFIQPG-----------AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CEEEECCSSCCCEECTT-----------SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred ceeeecCCCcccccCcc-----------ccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 889999999887441 11334799999999999997654 6889999999999999986
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=9.9e-24 Score=188.66 Aligned_cols=203 Identities=16% Similarity=0.098 Sum_probs=170.7
Q ss_pred cCceEEeecCCcCCcccCC---CCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceeccc
Q 039599 70 VSPVTIDFTSCINLTDFPH---ISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAY 146 (293)
Q Consensus 70 ~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 146 (293)
++|+.|++++|.+....|. .+.+|++|++++|.+...++ +..+++|++|++++|.+.+ ++ ..++|++|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CC----CCCCcCEEECc
Confidence 4899999999995554443 35689999999999986665 8899999999999997654 22 33899999999
Q ss_pred ccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC---cccccccc-CccccceecccCCCccCC
Q 039599 147 GCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL---DNLSDNIG-NFKSFEYMGAHGSAISQL 222 (293)
Q Consensus 147 ~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~~~~~-~l~~L~~L~l~~~~~~~~ 222 (293)
+|.+.+..+. .+++|++|++++|.+++..+..+..+++|+.|++++| +..+..+. .+++|++|++++|.++++
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 9987765443 4678999999999998887888999999999999999 33555555 789999999999999888
Q ss_pred CCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCchhHhhcccCCCCC
Q 039599 223 PSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293 (293)
Q Consensus 223 ~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~ld 293 (293)
|. ...+++|+.|++++|.++++|..+..+++|+.|++++|.++++|..+..+++|+.+|
T Consensus 185 ~~------------~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~ 243 (487)
T 3oja_A 185 KG------------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD 243 (487)
T ss_dssp EC------------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEE
T ss_pred cc------------cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEE
Confidence 54 336789999999999999988889999999999999999999998888888887653
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=6.4e-22 Score=165.39 Aligned_cols=195 Identities=20% Similarity=0.194 Sum_probs=161.2
Q ss_pred cCceEEeecCCcCCcccCCCC-CCccEEecccccccccC-ccccCCCCCCEEEeccCccccccccccccccccceecccc
Q 039599 70 VSPVTIDFTSCINLTDFPHIS-GNITRLYLDETAIEEVP-SSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYG 147 (293)
Q Consensus 70 ~~L~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 147 (293)
.++++++++++. ++.+|..+ .+++.|++++|.+..++ ..+..+++|++|++++|.+... +.. ..+++|++|++++
T Consensus 10 ~~l~~l~~~~~~-l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 10 ASHLEVNCDKRN-LTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSH 86 (290)
T ss_dssp TTCCEEECTTSC-CSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCS
T ss_pred CCccEEECCCCC-CCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCC
Confidence 478888888887 66777654 47999999999998775 4788899999999999886653 332 6888999999999
Q ss_pred cccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--cccc-ccccCccccceecccCCCccCCCC
Q 039599 148 CLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLS-DNIGNFKSFEYMGAHGSAISQLPS 224 (293)
Q Consensus 148 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~-~~~~~l~~L~~L~l~~~~~~~~~~ 224 (293)
|.+. .+|..+..+++|++|++++|.+++..+..|..+++|+.|++++| ..++ ..+..+++|+.|++++|.+..+|.
T Consensus 87 N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 165 (290)
T 1p9a_G 87 NQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165 (290)
T ss_dssp SCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred CcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH
Confidence 8665 67778888999999999999997766677889999999999998 4444 346789999999999999998854
Q ss_pred cCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCC
Q 039599 225 LSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEG 278 (293)
Q Consensus 225 l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~ 278 (293)
- .+..+++|++|++++|.++.+|..+...++|+.+++++|++..
T Consensus 166 ~----------~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 166 G----------LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp T----------TTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred H----------HhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 1 2567889999999999999999988889999999999998874
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=7e-22 Score=164.04 Aligned_cols=198 Identities=15% Similarity=0.153 Sum_probs=155.4
Q ss_pred ceEEEeccCCcccccCCCCCC-CcCceEEeecCCcCCcccCCC---CCCccEEecccccccccCc-cccCCCCCCEEEec
Q 039599 48 EEQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINLTDFPHI---SGNITRLYLDETAIEEVPS-SIKCLTNLKLLRIN 122 (293)
Q Consensus 48 ~l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~ 122 (293)
.+++|++++|.+....+..+. +++|++|++++|.+....+.. +.+|++|++++|.+..++. .+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 389999999987665554554 459999999999844333323 4578999999999987764 68889999999999
Q ss_pred cCccccccccccccccccceecccccccCC-CCChhhhccccCCceecCCCcccccCCCcccccccCc----eecCCCC-
Q 039599 123 RCTRLKRVSTSICKLKSLIALSAYGCLNLE-RFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLE----TLGFSEL- 196 (293)
Q Consensus 123 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~----~L~l~~~- 196 (293)
+|.+....+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..+..+..+++|+ .|++++|
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 988776555568889999999999997765 3688899999999999999999776666777777777 7888888
Q ss_pred -ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCc
Q 039599 197 -DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS 255 (293)
Q Consensus 197 -~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~ 255 (293)
..++.......+|++|++++|.++++|.. .+..+++|++|++++|.++.
T Consensus 189 l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~----------~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 189 MNFIQPGAFKEIRLKELALDTNQLKSVPDG----------IFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCEECTTSSCSCCEEEEECCSSCCSCCCTT----------TTTTCCSCCEEECCSSCBCC
T ss_pred ccccCccccCCCcccEEECCCCceeecCHh----------HhcccccccEEEccCCcccc
Confidence 55555555666899999999999888541 25678889999999998774
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=9.4e-22 Score=162.78 Aligned_cols=191 Identities=18% Similarity=0.259 Sum_probs=161.0
Q ss_pred CCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecC
Q 039599 91 GNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLG 170 (293)
Q Consensus 91 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 170 (293)
...+.+++++++++.+|..+. +++++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 367899999999999998664 689999999998776666678899999999999997775555667899999999999
Q ss_pred CCcccccCCCcccccccCceecCCCC--ccc-cccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceee
Q 039599 171 RTTITEQRPSSFENVKGLETLGFSEL--DNL-SDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLH 247 (293)
Q Consensus 171 ~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l-~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~ 247 (293)
+|.+.+..+..|..+++|+.|++++| ..+ +..+..+++|++|++++|.+.++|.- .++.+++|++|+
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----------~~~~l~~L~~L~ 163 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG----------VFDKLTSLKELR 163 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----------TTTTCTTCCEEE
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh----------HccCCcccceeE
Confidence 99997766667889999999999998 333 44578999999999999999988541 256889999999
Q ss_pred cCCccCCcCCc-ccCCCCCCcEEeccCCcCCCCch-hHhhcccCCCCC
Q 039599 248 LNNCALTSIPQ-EIGYLSSLEWLHLRGNNLEGLPA-SIKQISRLESLD 293 (293)
Q Consensus 248 l~~n~i~~l~~-~~~~~~~L~~L~l~~n~l~~~p~-~l~~l~~L~~ld 293 (293)
+++|.++.++. .+..+++|+.|++++|+++++|+ .+..+++|+.|+
T Consensus 164 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 211 (270)
T 2o6q_A 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211 (270)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEE
Confidence 99999999665 57889999999999999999765 477788887653
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=5.5e-25 Score=195.68 Aligned_cols=244 Identities=18% Similarity=0.183 Sum_probs=131.2
Q ss_pred eEEEeccCCcccc----cCCCCCC-CcCceEEeecCCcCCccc--------CCCCCCccEEecccccccc-----cCccc
Q 039599 49 EQLLDSKGCKILR----SFPSNLH-FVSPVTIDFTSCINLTDF--------PHISGNITRLYLDETAIEE-----VPSSI 110 (293)
Q Consensus 49 l~~L~l~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~-----l~~~~ 110 (293)
+++|++++|.+.. .++..+. +++|++|++++|.+.... .....+|++|++++|.++. ++..+
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 166 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence 5555555555432 2232222 336666666666532211 1122356666666666542 23445
Q ss_pred cCCCCCCEEEeccCccccccccccc-----cccccceecccccccCCC----CChhhhccccCCceecCCCcccccCCC-
Q 039599 111 KCLTNLKLLRINRCTRLKRVSTSIC-----KLKSLIALSAYGCLNLER----FPESLEKMEHLNQINLGRTTITEQRPS- 180 (293)
Q Consensus 111 ~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~- 180 (293)
..+++|++|++++|.+....+..+. ..++|++|++++|.+... ++..+..+++|++|++++|.+++....
T Consensus 167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 246 (461)
T 1z7x_W 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE 246 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHH
Confidence 5567777777777665443332222 244777777777765542 455566677777777777776443211
Q ss_pred ----cccccccCceecCCCC--cc-----ccccccCccccceecccCCCccCC-CC-cC-------CCCccCcccc----
Q 039599 181 ----SFENVKGLETLGFSEL--DN-----LSDNIGNFKSFEYMGAHGSAISQL-PS-LS-------SGLVPLSASL---- 236 (293)
Q Consensus 181 ----~~~~~~~L~~L~l~~~--~~-----l~~~~~~l~~L~~L~l~~~~~~~~-~~-l~-------~~l~~l~~~~---- 236 (293)
.+..+++|+.|++++| .. ++..+..+++|++|++++|.+.+. +. +. +.++.|+++.
T Consensus 247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 326 (461)
T 1z7x_W 247 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence 1223567777777776 11 455555667777777777766432 10 11 2444444431
Q ss_pred ----------cCCccccceeecCCccCCc-CCccc----CC-CCCCcEEeccCCcCC-----CCchhHhhcccCCCC
Q 039599 237 ----------LSGLSLLYWLHLNNCALTS-IPQEI----GY-LSSLEWLHLRGNNLE-----GLPASIKQISRLESL 292 (293)
Q Consensus 237 ----------~~~~~~L~~L~l~~n~i~~-l~~~~----~~-~~~L~~L~l~~n~l~-----~~p~~l~~l~~L~~l 292 (293)
+..+++|++|++++|.+++ .+..+ .. .++|+.|++++|+++ .+|..+..+++|+.|
T Consensus 327 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 403 (461)
T 1z7x_W 327 AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403 (461)
T ss_dssp GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred hHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEE
Confidence 2233566666666666654 12222 21 556666666666666 355556666666554
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=5.1e-22 Score=164.51 Aligned_cols=176 Identities=17% Similarity=0.213 Sum_probs=77.3
Q ss_pred CccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCC
Q 039599 92 NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR 171 (293)
Q Consensus 92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 171 (293)
+|++|++++|.+..++ .+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 64 ~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 142 (272)
T 3rfs_A 64 NVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142 (272)
T ss_dssp TCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCC
Confidence 4444444444444332 344444445555544444333333344444455555544444433333344444455555555
Q ss_pred CcccccCCCcccccccCceecCCCC--ccc-cccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeec
Q 039599 172 TTITEQRPSSFENVKGLETLGFSEL--DNL-SDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHL 248 (293)
Q Consensus 172 n~~~~~~~~~~~~~~~L~~L~l~~~--~~l-~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l 248 (293)
|.+++..+..+..+++|+.|++++| ..+ +..+..+++|++|++++|.+.+++.- .++.+++|++|++
T Consensus 143 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------~~~~l~~L~~L~l 212 (272)
T 3rfs_A 143 NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG----------VFDRLTSLQYIWL 212 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT----------TTTTCTTCCEEEC
T ss_pred CccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH----------HHhCCcCCCEEEc
Confidence 5444333333444444444444444 222 12234444555555555555444220 1234445555555
Q ss_pred CCccCCcCCcccCCCCCCcEEeccCCcCCC-CchhHh
Q 039599 249 NNCALTSIPQEIGYLSSLEWLHLRGNNLEG-LPASIK 284 (293)
Q Consensus 249 ~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~-~p~~l~ 284 (293)
++|.+. +.+++++.++++.|.+++ +|.+++
T Consensus 213 ~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 213 HDNPWD------CTCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred cCCCcc------ccCcHHHHHHHHHHhCCCcccCccc
Confidence 555332 223444555555555544 444443
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2.4e-21 Score=163.34 Aligned_cols=190 Identities=21% Similarity=0.295 Sum_probs=123.5
Q ss_pred cCceEEeecCCcCCcccCC--CCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccc
Q 039599 70 VSPVTIDFTSCINLTDFPH--ISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYG 147 (293)
Q Consensus 70 ~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 147 (293)
.+|+.|++++|. ...++. .+.+|++|++++|.+..+++ +..+++|++|++++|.+.. .+ .+..+++|++|++++
T Consensus 41 ~~L~~L~l~~~~-i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 41 DGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp HTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTT
T ss_pred CCcCEEEeeCCC-ccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCC
Confidence 366666666665 333432 23466777777777766665 6677777777777766443 22 466677777777777
Q ss_pred cccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCc
Q 039599 148 CLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSL 225 (293)
Q Consensus 148 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l 225 (293)
|.+.+ ++ .+..+++|++|++++|.+++..+ +..+++|+.|++++| ..++. +..+++|++|++++|.+.+++.
T Consensus 117 n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~- 190 (308)
T 1h6u_A 117 TQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP- 190 (308)
T ss_dssp SCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred CCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-
Confidence 75543 32 26677777777777777754322 666777777777777 33333 6677777777777777766643
Q ss_pred CCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCch
Q 039599 226 SSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPA 281 (293)
Q Consensus 226 ~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~ 281 (293)
+..+++|++|++++|.+++++. +..+++|+.|++++|++++.|.
T Consensus 191 -----------l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 191 -----------LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp -----------GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCE
T ss_pred -----------hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCe
Confidence 3466777777777777777653 6677777777777777766543
No 74
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.87 E-value=5.5e-25 Score=195.65 Aligned_cols=264 Identities=14% Similarity=0.091 Sum_probs=158.3
Q ss_pred eEEEEeecCcccceeec----hhhccCCccccEEEEeccceeeec-----------ccceEEEeccCCcccccC----CC
Q 039599 5 IESIFLNLSTIKGINLN----LRAFSNMSNLRVLKFYIPEISVHM-----------SIEEQLLDSKGCKILRSF----PS 65 (293)
Q Consensus 5 ~~~i~l~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~-----------~~~l~~L~l~~~~~~~~~----~~ 65 (293)
++.+ ++++|.....+ +..+..+++|++|++++|.+.... ...|++|++++|.+.... +.
T Consensus 87 L~~L--~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 87 IQKL--SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCEE--ECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred eeEE--EccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 4444 66666544322 345666666777777666654210 012666777666554322 21
Q ss_pred CC-CCcCceEEeecCCcCCcccC--------CCCCCccEEecccccccc-----cCccccCCCCCCEEEeccCccccccc
Q 039599 66 NL-HFVSPVTIDFTSCINLTDFP--------HISGNITRLYLDETAIEE-----VPSSIKCLTNLKLLRINRCTRLKRVS 131 (293)
Q Consensus 66 ~~-~~~~L~~L~l~~~~~~~~~~--------~~~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~ 131 (293)
.+ .+++|++|++++|.+....+ ....+|++|++++|.++. ++..+..+++|++|++++|.+.....
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 21 13467777777776332211 113367777777777654 35556667777777777776543221
Q ss_pred ----c-ccccccccceecccccccCCC----CChhhhccccCCceecCCCcccccCCCcccc-----cccCceecCCCC-
Q 039599 132 ----T-SICKLKSLIALSAYGCLNLER----FPESLEKMEHLNQINLGRTTITEQRPSSFEN-----VKGLETLGFSEL- 196 (293)
Q Consensus 132 ----~-~l~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~l~~~- 196 (293)
. ....+++|++|++++|.+... ++..+..+++|++|++++|.+.+..+..+.. .++|+.|++++|
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 1 112466777777777755432 4555666777777777777765433333322 257777777777
Q ss_pred -c-----cccccccCccccceecccCCCccCC-CC-cCCCCccCcccccC-CccccceeecCCccCCc-----CCcccCC
Q 039599 197 -D-----NLSDNIGNFKSFEYMGAHGSAISQL-PS-LSSGLVPLSASLLS-GLSLLYWLHLNNCALTS-----IPQEIGY 262 (293)
Q Consensus 197 -~-----~l~~~~~~l~~L~~L~l~~~~~~~~-~~-l~~~l~~l~~~~~~-~~~~L~~L~l~~n~i~~-----l~~~~~~ 262 (293)
. .++..+..+++|++|++++|.+.+. +. +.. .+. ..++|++|++++|.+++ +|..+..
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~--------~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 396 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ--------GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH--------HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH--------HHcCCCCceEEEECCCCCCChhhHHHHHHHHHh
Confidence 1 2345556667777777777776554 11 110 011 25689999999999983 7777888
Q ss_pred CCCCcEEeccCCcCCC
Q 039599 263 LSSLEWLHLRGNNLEG 278 (293)
Q Consensus 263 ~~~L~~L~l~~n~l~~ 278 (293)
+++|+.|++++|++++
T Consensus 397 ~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 397 NHSLRELDLSNNCLGD 412 (461)
T ss_dssp CCCCCEEECCSSSCCH
T ss_pred CCCccEEECCCCCCCH
Confidence 9999999999999985
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=2.8e-21 Score=157.03 Aligned_cols=188 Identities=18% Similarity=0.207 Sum_probs=91.8
Q ss_pred CceEEeecCCcCCcccCC-C---CCCccEEeccccc-ccccCc-cccCCCCCCEEEecc-Ccccccccccccccccccee
Q 039599 71 SPVTIDFTSCINLTDFPH-I---SGNITRLYLDETA-IEEVPS-SIKCLTNLKLLRINR-CTRLKRVSTSICKLKSLIAL 143 (293)
Q Consensus 71 ~L~~L~l~~~~~~~~~~~-~---~~~L~~L~l~~~~-~~~l~~-~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L 143 (293)
++++|++++|. ++.+|. . +.+|++|++++|. ++.+++ .|.++++|++|++++ |.+....+..+..+++|++|
T Consensus 32 ~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 56666666665 333332 2 2355566666664 555554 455566666666665 44443333445555666666
Q ss_pred cccccccCCCCChhhhccccCC---ceecCCC-cccccCCCcccccccCc-eecCCCC--ccccccccCccccceecccC
Q 039599 144 SAYGCLNLERFPESLEKMEHLN---QINLGRT-TITEQRPSSFENVKGLE-TLGFSEL--DNLSDNIGNFKSFEYMGAHG 216 (293)
Q Consensus 144 ~l~~~~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~~~~L~-~L~l~~~--~~l~~~~~~l~~L~~L~l~~ 216 (293)
++++|.+.+ +|. +..+++|+ +|++++| .+++..+..|..+++|+ .|++++| ..++......++|++|++++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCC
Confidence 666654443 333 55555555 6666665 55443333455555555 5555554 33333222224455555555
Q ss_pred CC-ccCCCCcCCCCccCcccccCCc-cccceeecCCccCCcCCcccCCCCCCcEEeccC
Q 039599 217 SA-ISQLPSLSSGLVPLSASLLSGL-SLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRG 273 (293)
Q Consensus 217 ~~-~~~~~~l~~~l~~l~~~~~~~~-~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~ 273 (293)
|+ +..+|.- .+.++ ++|++|++++|.++.+|.. .+++|+.|++++
T Consensus 189 n~~l~~i~~~----------~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 189 NKYLTVIDKD----------AFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARN 235 (239)
T ss_dssp CTTCCEECTT----------TTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTT
T ss_pred CCCcccCCHH----------HhhccccCCcEEECCCCccccCChh--HhccCceeeccC
Confidence 42 4443210 13334 4445555555544444432 344444444444
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=8e-22 Score=160.22 Aligned_cols=194 Identities=16% Similarity=0.225 Sum_probs=158.2
Q ss_pred CcccCCCCCCccEEecccccccccCc-cccCCCCCCEEEeccCc-cccccccccccccccceecccc-cccCCCCChhhh
Q 039599 83 LTDFPHISGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCT-RLKRVSTSICKLKSLIALSAYG-CLNLERFPESLE 159 (293)
Q Consensus 83 ~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~ 159 (293)
.+.+|....++++|++++|++..+++ .+.++++|++|++++|. +....+..+..+++|++|++++ |.+.+..+..+.
T Consensus 23 l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~ 102 (239)
T 2xwt_C 23 IQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102 (239)
T ss_dssp CSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred ccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence 77788744489999999999998887 78899999999999997 5554455788999999999998 766655557789
Q ss_pred ccccCCceecCCCcccccCCCcccccccCc---eecCCCC---cccc-ccccCccccc-eecccCCCccCCCCcCCCCcc
Q 039599 160 KMEHLNQINLGRTTITEQRPSSFENVKGLE---TLGFSEL---DNLS-DNIGNFKSFE-YMGAHGSAISQLPSLSSGLVP 231 (293)
Q Consensus 160 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~---~L~l~~~---~~l~-~~~~~l~~L~-~L~l~~~~~~~~~~l~~~l~~ 231 (293)
.+++|++|++++|.+++ +|. +..+++|+ .|++++| ..++ ..+..+++|+ ++++++|.+..+|..
T Consensus 103 ~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~------ 174 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY------ 174 (239)
T ss_dssp CCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTT------
T ss_pred CCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHh------
Confidence 99999999999999965 665 78888888 9999987 3444 3578899999 999999999877541
Q ss_pred CcccccCCccccceeecCCcc-CCcCC-cccCCC-CCCcEEeccCCcCCCCchhHhhcccCCC
Q 039599 232 LSASLLSGLSLLYWLHLNNCA-LTSIP-QEIGYL-SSLEWLHLRGNNLEGLPASIKQISRLES 291 (293)
Q Consensus 232 l~~~~~~~~~~L~~L~l~~n~-i~~l~-~~~~~~-~~L~~L~l~~n~l~~~p~~l~~l~~L~~ 291 (293)
.+.. ++|++|++++|. ++.++ ..+..+ ++|+.|++++|+++++|.. .+++|+.
T Consensus 175 ----~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~ 230 (239)
T 2xwt_C 175 ----AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKE 230 (239)
T ss_dssp ----TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSE
T ss_pred ----hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCce
Confidence 1334 789999999995 99865 567888 9999999999999998765 3444443
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=3.5e-21 Score=160.87 Aligned_cols=188 Identities=17% Similarity=0.187 Sum_probs=161.2
Q ss_pred CCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceec
Q 039599 90 SGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINL 169 (293)
Q Consensus 90 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 169 (293)
+.+++++++++++++.+|..+. +++++|++++|.+....+..+..+++|++|++++|.+.+. +. ...+++|++|++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L 84 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLDL 84 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEEC
T ss_pred cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEEEC
Confidence 4578999999999999998664 6899999999998877778899999999999999976643 33 278899999999
Q ss_pred CCCcccccCCCcccccccCceecCCCC--cccc-ccccCccccceecccCCCccCCCCcCCCCccCcccccCCcccccee
Q 039599 170 GRTTITEQRPSSFENVKGLETLGFSEL--DNLS-DNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWL 246 (293)
Q Consensus 170 ~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~-~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L 246 (293)
++|.+. .+|..+..+++|+.|++++| ..++ ..+..+++|++|++++|.+..+|.- .+..+++|+.|
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~----------~~~~l~~L~~L 153 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG----------LLTPTPKLEKL 153 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT----------TTTTCTTCCEE
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChh----------hcccccCCCEE
Confidence 999995 67888889999999999999 4454 5688999999999999999988541 25678899999
Q ss_pred ecCCccCCcCCc-ccCCCCCCcEEeccCCcCCCCchhHhhcccCCCC
Q 039599 247 HLNNCALTSIPQ-EIGYLSSLEWLHLRGNNLEGLPASIKQISRLESL 292 (293)
Q Consensus 247 ~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~l 292 (293)
++++|.++.+|. .+..+++|+.|++++|+++.+|..+..+++|+.+
T Consensus 154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l 200 (290)
T 1p9a_G 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFA 200 (290)
T ss_dssp ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEE
T ss_pred ECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeE
Confidence 999999999775 4578999999999999999999988887777654
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=4.6e-21 Score=161.62 Aligned_cols=182 Identities=19% Similarity=0.294 Sum_probs=156.3
Q ss_pred CCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceec
Q 039599 90 SGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINL 169 (293)
Q Consensus 90 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 169 (293)
+.+|++|+++++.+..++ .+..+++|++|++++|.+... +. +..+++|++|++++|.+.+ + +.+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEEC
Confidence 558999999999999887 588999999999999987654 43 8899999999999997654 3 46889999999999
Q ss_pred CCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceee
Q 039599 170 GRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLH 247 (293)
Q Consensus 170 ~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~ 247 (293)
++|.+++. + .+..+++|+.|++++| ..++. +..+++|++|++++|.+.+++. +..+++|++|+
T Consensus 115 ~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~------------l~~l~~L~~L~ 179 (308)
T 1h6u_A 115 TSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP------------LANLSKLTTLK 179 (308)
T ss_dssp TTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG------------GTTCTTCCEEE
T ss_pred CCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh------------hcCCCCCCEEE
Confidence 99999653 3 4889999999999999 44443 7889999999999999988754 56889999999
Q ss_pred cCCccCCcCCcccCCCCCCcEEeccCCcCCCCchhHhhcccCCCCC
Q 039599 248 LNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIKQISRLESLD 293 (293)
Q Consensus 248 l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~l~~l~~L~~ld 293 (293)
+++|.+++++. +..+++|+.|++++|+++++++ +..+++|+.|+
T Consensus 180 l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~ 223 (308)
T 1h6u_A 180 ADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVT 223 (308)
T ss_dssp CCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEE
T ss_pred CCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEE
Confidence 99999999775 7889999999999999999885 78888888653
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.3e-20 Score=154.17 Aligned_cols=176 Identities=18% Similarity=0.257 Sum_probs=99.3
Q ss_pred CceEEeecCCcCCcccCCCC-CCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceeccccc
Q 039599 71 SPVTIDFTSCINLTDFPHIS-GNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGC 148 (293)
Q Consensus 71 ~L~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 148 (293)
..++++++++. ++.+|..+ .++++|++++|.+..+++ .+.++++|++|++++|.+....+..+..+++|++|++++|
T Consensus 15 ~~~~l~~~~~~-l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKS-LDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCC-CSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCC-ccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 44566666665 55555443 356677777776665544 4566666777777666655544555566666666666666
Q ss_pred ccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCCccccccccCccccceecccCCCccCCCCcCCC
Q 039599 149 LNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSG 228 (293)
Q Consensus 149 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~ 228 (293)
.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++ ++|.+.++|.-
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L---------------------s~N~l~~~~~~--- 149 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL---------------------NTNQLQSIPAG--- 149 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC---------------------CSSCCCCCCTT---
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEEC---------------------cCCcCCccCHH---
Confidence 555544455566666666666666665433333444555555554 44554444220
Q ss_pred CccCcccccCCccccceeecCCccCCcCCc-ccCCCCCCcEEeccCCcCCC
Q 039599 229 LVPLSASLLSGLSLLYWLHLNNCALTSIPQ-EIGYLSSLEWLHLRGNNLEG 278 (293)
Q Consensus 229 l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~l~~ 278 (293)
.++.+++|++|++++|.++.++. .+..+++|+.|++++|+++.
T Consensus 150 -------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 150 -------AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp -------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred -------HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 13345555555665555555332 45555556666666655543
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=7.1e-21 Score=160.61 Aligned_cols=193 Identities=15% Similarity=0.124 Sum_probs=115.8
Q ss_pred CceEEeecCCcCCcccCCC-----CCCccEEeccccccccc-C----ccccCCCCCCEEEeccCcccccccccccccccc
Q 039599 71 SPVTIDFTSCINLTDFPHI-----SGNITRLYLDETAIEEV-P----SSIKCLTNLKLLRINRCTRLKRVSTSICKLKSL 140 (293)
Q Consensus 71 ~L~~L~l~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~l-~----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 140 (293)
+|++|++++|.+.+..|.. ..+|++|++++|.+... + ..+..+++|++|++++|.+....+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 4556666655544444433 23455556666555421 1 122345566666666665554444555566666
Q ss_pred ceecccccccCCC--C--ChhhhccccCCceecCCCcccccCCC----cccccccCceecCCCC--cc-ccccccCc---
Q 039599 141 IALSAYGCLNLER--F--PESLEKMEHLNQINLGRTTITEQRPS----SFENVKGLETLGFSEL--DN-LSDNIGNF--- 206 (293)
Q Consensus 141 ~~L~l~~~~~~~~--~--~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~l~~~--~~-l~~~~~~l--- 206 (293)
++|++++|.+.+. + +..+..+++|++|++++|.++. ++. .+..+++|++|++++| .. .|..+..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 6666666654321 1 1223455566666666666532 111 1344566666666666 22 24444444
Q ss_pred cccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCC
Q 039599 207 KSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEG 278 (293)
Q Consensus 207 ~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~ 278 (293)
++|++|++++|.++.+|.. + .++|++|++++|.++++|. +..+++|+.|++++|++++
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~-----------~--~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKG-----------L--PAKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCCSCCSC-----------C--CSCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCCchhhh-----------h--cCCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence 6888888999998877651 1 2689999999999998876 6788999999999999874
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=2.9e-20 Score=153.98 Aligned_cols=176 Identities=18% Similarity=0.277 Sum_probs=149.2
Q ss_pred CCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceec
Q 039599 90 SGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINL 169 (293)
Q Consensus 90 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 169 (293)
+.++++|+++++.+..++. +..+++|++|++++|.+.. . ..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 4578888888888877654 7889999999999998765 3 36789999999999999888777777899999999999
Q ss_pred CCCcccccCCCcccccccCceecCCCC--cccc-ccccCccccceecccCCCccCCCCcCCCCccCcccccCCcccccee
Q 039599 170 GRTTITEQRPSSFENVKGLETLGFSEL--DNLS-DNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWL 246 (293)
Q Consensus 170 ~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~-~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L 246 (293)
++|.+++..+..+..+++|++|++++| ..++ ..+..+++|++|++++|.+.+++.- .++.+++|++|
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------~~~~l~~L~~L 186 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG----------VFDKLTQLKDL 186 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----------TTTTCTTCCEE
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH----------HhcCCccCCEE
Confidence 999998777777889999999999999 4444 3467899999999999999988431 25688999999
Q ss_pred ecCCccCCcCC-cccCCCCCCcEEeccCCcCCC
Q 039599 247 HLNNCALTSIP-QEIGYLSSLEWLHLRGNNLEG 278 (293)
Q Consensus 247 ~l~~n~i~~l~-~~~~~~~~L~~L~l~~n~l~~ 278 (293)
++++|.+++++ ..+..+++|+.|++++|++.+
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence 99999999955 457899999999999999986
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=6.4e-21 Score=160.91 Aligned_cols=212 Identities=13% Similarity=0.099 Sum_probs=165.5
Q ss_pred cCceEEeecCCcCCcc----cCC--CCCCccEEeccccccc-ccCccc--cCCCCCCEEEeccCccccccc----ccccc
Q 039599 70 VSPVTIDFTSCINLTD----FPH--ISGNITRLYLDETAIE-EVPSSI--KCLTNLKLLRINRCTRLKRVS----TSICK 136 (293)
Q Consensus 70 ~~L~~L~l~~~~~~~~----~~~--~~~~L~~L~l~~~~~~-~l~~~~--~~l~~L~~L~l~~~~~~~~~~----~~l~~ 136 (293)
..++.+.+.++..... ++. ...+|++|++++|.+. ..|..+ ..+++|++|++++|.+....+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4678888888874321 111 1246999999999986 555666 889999999999998876443 23457
Q ss_pred ccccceecccccccCCCCChhhhccccCCceecCCCccccc--C--CCcccccccCceecCCCC--ccccc----cccCc
Q 039599 137 LKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQ--R--PSSFENVKGLETLGFSEL--DNLSD----NIGNF 206 (293)
Q Consensus 137 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~--~~~~~~~~~L~~L~l~~~--~~l~~----~~~~l 206 (293)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. + +..+..+++|++|++++| ..++. .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 89999999999988877788899999999999999987542 2 223467899999999999 33343 24678
Q ss_pred cccceecccCCCccCC-CC-cCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCCCchhHh
Q 039599 207 KSFEYMGAHGSAISQL-PS-LSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPASIK 284 (293)
Q Consensus 207 ~~L~~L~l~~~~~~~~-~~-l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~~l~ 284 (293)
++|++|++++|.+.+. |. +. .+..+++|++|++++|.++.+|..+. ++|+.|++++|+++++|. +.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~---------~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~ 291 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAP---------RCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PD 291 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCS---------SCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TT
T ss_pred CCCCEEECCCCCCCccchhhHH---------hccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hh
Confidence 9999999999999987 65 21 12234799999999999999988774 899999999999999875 67
Q ss_pred hcccCCCCC
Q 039599 285 QISRLESLD 293 (293)
Q Consensus 285 ~l~~L~~ld 293 (293)
.+++|+.|+
T Consensus 292 ~l~~L~~L~ 300 (310)
T 4glp_A 292 ELPEVDNLT 300 (310)
T ss_dssp SCCCCSCEE
T ss_pred hCCCccEEE
Confidence 788888764
No 83
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=1.4e-19 Score=166.60 Aligned_cols=242 Identities=16% Similarity=0.132 Sum_probs=160.2
Q ss_pred ccCCccccEEEEeccceeeeccc---ceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCccc--C---CCCCCccEE
Q 039599 25 FSNMSNLRVLKFYIPEISVHMSI---EEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDF--P---HISGNITRL 96 (293)
Q Consensus 25 ~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~---~~~~~L~~L 96 (293)
+.....++.|++.+|.+...... .++.+.+.++.... .+....+++|+.+++++|...... + ....+++++
T Consensus 324 ~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L 402 (635)
T 4g8a_A 324 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYL 402 (635)
T ss_dssp GGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEE
T ss_pred cccchhhhhhhcccccccCcCcccchhhhhcccccccCCC-Ccccccccccccchhhccccccccccccchhhhhhhhhh
Confidence 44445566666665554422211 15555555554322 233334557777777777643221 1 123467777
Q ss_pred ecccccccccCccccCCCCCCEEEeccCccccccc-cccccccccceecccccccCCCCChhhhccccCCceecCCCccc
Q 039599 97 YLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVS-TSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTIT 175 (293)
Q Consensus 97 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 175 (293)
++..+....++..+..+++|+.+++..+......+ ..+..+++++.++++.|......+..+..++.+++|++++|...
T Consensus 403 ~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~ 482 (635)
T 4g8a_A 403 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 482 (635)
T ss_dssp ECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred hccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccc
Confidence 77777776666667777888888887766554433 34567778888888888777667777777888888888887643
Q ss_pred -ccCCCcccccccCceecCCCC--c-cccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCc
Q 039599 176 -EQRPSSFENVKGLETLGFSEL--D-NLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNC 251 (293)
Q Consensus 176 -~~~~~~~~~~~~L~~L~l~~~--~-~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n 251 (293)
...|..|..+++|++|++++| . ..+..+..+++|++|++++|.+.+++.. .++++++|++|++++|
T Consensus 483 ~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~----------~~~~l~~L~~L~Ls~N 552 (635)
T 4g8a_A 483 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF----------PYKCLNSLQVLDYSLN 552 (635)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCG----------GGTTCTTCCEEECTTS
T ss_pred cccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChh----------HHhCCCCCCEEECCCC
Confidence 345667777888888888887 3 3456677888888888888888777331 2567788888888888
Q ss_pred cCCc-CCcccCCC-CCCcEEeccCCcCC
Q 039599 252 ALTS-IPQEIGYL-SSLEWLHLRGNNLE 277 (293)
Q Consensus 252 ~i~~-l~~~~~~~-~~L~~L~l~~n~l~ 277 (293)
.|+. .|.++..+ ++|+.|++++|++.
T Consensus 553 ~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 553 HIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred cCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 8887 45566666 57888888888876
No 84
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=4.1e-20 Score=167.16 Aligned_cols=192 Identities=19% Similarity=0.214 Sum_probs=138.3
Q ss_pred CceEEeecCCcCCcccCC-CCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccc
Q 039599 71 SPVTIDFTSCINLTDFPH-ISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL 149 (293)
Q Consensus 71 ~L~~L~l~~~~~~~~~~~-~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 149 (293)
+++.|++++|. ++.+|. .+.+|++|++++|.++.+| ..+++|++|++++|.+.+ +|. +.. +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNLPPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCCCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCC-CCccCHhHcCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCc
Confidence 67778887777 444665 3457888888888887777 446778888888877655 555 444 78888888876
Q ss_pred cCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCC
Q 039599 150 NLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSS 227 (293)
Q Consensus 150 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~ 227 (293)
+.+ +|. .+++|++|++++|.+++ +|. .+++|+.|++++| ..+|. +. ++|+.|++++|.++.+|.+..
T Consensus 132 l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~~~~ 200 (571)
T 3cvr_A 132 LTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPAVPV 200 (571)
T ss_dssp CSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCCCC-
T ss_pred CCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhhHHH
Confidence 655 554 56788888888888864 454 4677888888888 45665 44 788899999998888765221
Q ss_pred CCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcCCC-CchhHhhccc
Q 039599 228 GLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNLEG-LPASIKQISR 288 (293)
Q Consensus 228 ~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~-~p~~l~~l~~ 288 (293)
. .....+.|+.|++++|.|+.+|..+..+++|+.|++++|++++ +|..+..+..
T Consensus 201 ~-------L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 201 R-------NHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp --------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred h-------hhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 1 0123344599999999999999888889999999999999987 7777776543
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=4.3e-22 Score=173.15 Aligned_cols=236 Identities=12% Similarity=0.124 Sum_probs=172.4
Q ss_pred hhccCCccccEEEEeccceeeecccceEEEeccCCcccccCCCCC-CCcCceEEeecCCcCC---cccC----------C
Q 039599 23 RAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNL-HFVSPVTIDFTSCINL---TDFP----------H 88 (293)
Q Consensus 23 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~---~~~~----------~ 88 (293)
..+..+++|++|++++|.+.... ...++..+ .+++|++|++++|... ..+| .
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~--------------~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~ 91 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEA--------------ARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 91 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHH--------------HHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHT
T ss_pred HHHhcCCCccEEECCCCCCCHHH--------------HHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHh
Confidence 45667777888888877654211 01122222 2458888888887422 2333 2
Q ss_pred CCCCccEEecccccccc-----cCccccCCCCCCEEEeccCccccccccc----cccc---------cccceeccccccc
Q 039599 89 ISGNITRLYLDETAIEE-----VPSSIKCLTNLKLLRINRCTRLKRVSTS----ICKL---------KSLIALSAYGCLN 150 (293)
Q Consensus 89 ~~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~----l~~l---------~~L~~L~l~~~~~ 150 (293)
...+|++|++++|.++. ++..+..+++|++|++++|.+....+.. +..+ ++|++|++++|.+
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 34689999999998875 6677888999999999999876443333 3344 8999999999977
Q ss_pred C-CCCC---hhhhccccCCceecCCCcccc-----cCCCcccccccCceecCCCC-------ccccccccCccccceecc
Q 039599 151 L-ERFP---ESLEKMEHLNQINLGRTTITE-----QRPSSFENVKGLETLGFSEL-------DNLSDNIGNFKSFEYMGA 214 (293)
Q Consensus 151 ~-~~~~---~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~~~~L~~L~l~~~-------~~l~~~~~~l~~L~~L~l 214 (293)
. ..++ ..+..+++|++|++++|.++. ..+..+..+++|+.|++++| ..++..+..+++|++|++
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 6 3333 467788999999999998863 23336778899999999998 235677889999999999
Q ss_pred cCCCccCC-CC-cCCCCccCccccc--CCccccceeecCCccCCc-----CCccc-CCCCCCcEEeccCCcCCCCc
Q 039599 215 HGSAISQL-PS-LSSGLVPLSASLL--SGLSLLYWLHLNNCALTS-----IPQEI-GYLSSLEWLHLRGNNLEGLP 280 (293)
Q Consensus 215 ~~~~~~~~-~~-l~~~l~~l~~~~~--~~~~~L~~L~l~~n~i~~-----l~~~~-~~~~~L~~L~l~~n~l~~~p 280 (293)
++|.+... +. +.. .+ +.+++|++|++++|.+++ +|..+ ..+++|+.|++++|++++..
T Consensus 252 ~~n~i~~~~~~~l~~--------~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 252 NDCLLSARGAAAVVD--------AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TTCCCCHHHHHHHHH--------HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCCCchhhHHHHHH--------HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 99998764 11 110 12 347899999999999988 77777 56899999999999999744
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=1.7e-19 Score=147.54 Aligned_cols=172 Identities=17% Similarity=0.191 Sum_probs=138.9
Q ss_pred eEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCC---CCCccEEecccccccccCc-cccCCCCCCEEEeccC
Q 039599 49 EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHI---SGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRC 124 (293)
Q Consensus 49 l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~ 124 (293)
.+.++++++. +..+|..+. .+++.|++++|.+.+..+.. +.+|++|++++|.+..+++ .+..+++|++|++++|
T Consensus 16 ~~~l~~~~~~-l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKS-LDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCC-CSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCC-ccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 5678888876 445676554 58999999999965544433 4589999999999987776 5789999999999999
Q ss_pred ccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--cccc-c
Q 039599 125 TRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLS-D 201 (293)
Q Consensus 125 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~-~ 201 (293)
.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++| ..++ .
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 988766677889999999999999887666667899999999999999997766667888899999999888 3333 3
Q ss_pred cccCccccceecccCCCccCC
Q 039599 202 NIGNFKSFEYMGAHGSAISQL 222 (293)
Q Consensus 202 ~~~~l~~L~~L~l~~~~~~~~ 222 (293)
.+..+++|+++++++|.+...
T Consensus 174 ~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTCTTCCEEECCSCCBCTT
T ss_pred HHhCCCCCCEEEeeCCceeCC
Confidence 567778888888888887665
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=2e-21 Score=165.76 Aligned_cols=242 Identities=12% Similarity=0.140 Sum_probs=175.2
Q ss_pred cccEEEEeccceeeec--c---cceEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcc-cC---CCCCCccEEeccc
Q 039599 30 NLRVLKFYIPEISVHM--S---IEEQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTD-FP---HISGNITRLYLDE 100 (293)
Q Consensus 30 ~L~~L~l~~~~~~~~~--~---~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~---~~~~~L~~L~l~~ 100 (293)
.++.++++++.+.... . ..++.+++.+|.+.+..+..+.+++|++|++++|.+... ++ ..+.+|++|++++
T Consensus 48 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~ 127 (336)
T 2ast_B 48 LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 127 (336)
T ss_dssp TSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred hheeeccccccCCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcC
Confidence 3778888887665211 1 238999999998877777777777999999999985433 33 4456899999999
Q ss_pred cccc-ccCccccCCCCCCEEEeccC-cccc-ccccccccccccceeccccc-ccCCC-CChhhhccc-cCCceecCCC--
Q 039599 101 TAIE-EVPSSIKCLTNLKLLRINRC-TRLK-RVSTSICKLKSLIALSAYGC-LNLER-FPESLEKME-HLNQINLGRT-- 172 (293)
Q Consensus 101 ~~~~-~l~~~~~~l~~L~~L~l~~~-~~~~-~~~~~l~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~-~L~~L~l~~n-- 172 (293)
|.+. ..+..++.+++|++|++++| .+.. .++..+..+++|++|++++| .+.+. ++..+..++ +|++|++++|
T Consensus 128 ~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~ 207 (336)
T 2ast_B 128 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 207 (336)
T ss_dssp CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred cccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcc
Confidence 9886 56667888999999999998 4443 25666778899999999998 66543 566788888 9999999998
Q ss_pred ccc-ccCCCcccccccCceecCCCCc----cccccccCccccceecccCCCccCC-CCcCCCCccCcccccCCcccccee
Q 039599 173 TIT-EQRPSSFENVKGLETLGFSELD----NLSDNIGNFKSFEYMGAHGSAISQL-PSLSSGLVPLSASLLSGLSLLYWL 246 (293)
Q Consensus 173 ~~~-~~~~~~~~~~~~L~~L~l~~~~----~l~~~~~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~~~~~~~~~L~~L 246 (293)
.++ +.++..+..+++|+.|++++|. ..+..+..+++|++|++++|. .+ +. .+ ..++.+++|++|
T Consensus 208 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~---~~-----~~l~~~~~L~~L 277 (336)
T 2ast_B 208 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPE---TL-----LELGEIPTLKTL 277 (336)
T ss_dssp GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGG---GG-----GGGGGCTTCCEE
T ss_pred cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHH---HH-----HHHhcCCCCCEE
Confidence 454 3445566788999999999882 445577788999999999986 22 11 00 125678899999
Q ss_pred ecCCccCCcCCcccCCC-CCCcEEeccCCcCCC-CchhHh
Q 039599 247 HLNNCALTSIPQEIGYL-SSLEWLHLRGNNLEG-LPASIK 284 (293)
Q Consensus 247 ~l~~n~i~~l~~~~~~~-~~L~~L~l~~n~l~~-~p~~l~ 284 (293)
++++| +++- .+..+ ..++.|++++|++++ .|+.+.
T Consensus 278 ~l~~~-i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 278 QVFGI-VPDG--TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp ECTTS-SCTT--CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred eccCc-cCHH--HHHHHHhhCcceEEecccCccccCCccc
Confidence 99998 4431 12222 235666789999987 555444
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=3.1e-19 Score=149.19 Aligned_cols=144 Identities=20% Similarity=0.271 Sum_probs=72.3
Q ss_pred cCceEEeecCCcCCcccCC--CCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccc
Q 039599 70 VSPVTIDFTSCINLTDFPH--ISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYG 147 (293)
Q Consensus 70 ~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 147 (293)
.+|+.|++++|. ...++. .+.+|++|++++|.+..+++ +..+++|++|++++|.+.. ++ .+..+++|++|++++
T Consensus 46 ~~L~~L~l~~~~-i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 46 NSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEH 121 (291)
T ss_dssp HTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTT
T ss_pred CcccEEEccCCC-cccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCC
Confidence 356666666665 333332 13455666666666655554 5556666666666655433 22 245555566666655
Q ss_pred cccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCC
Q 039599 148 CLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQL 222 (293)
Q Consensus 148 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~ 222 (293)
|.+.+ + +.+..+++|++|++++|.+++. ..+..+++|+.|++++| ..++. +..+++|++|++++|.++++
T Consensus 122 n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 122 NGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp SCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred CcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC
Confidence 54433 2 3455555555555555555432 33444555555555544 22222 44444444444444444443
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=1.7e-21 Score=169.38 Aligned_cols=214 Identities=17% Similarity=0.156 Sum_probs=164.9
Q ss_pred CcCceEEeecCCcCCccc-------CCCCCCccEEeccccccc----ccCcc-------ccCCCCCCEEEeccCcccc--
Q 039599 69 FVSPVTIDFTSCINLTDF-------PHISGNITRLYLDETAIE----EVPSS-------IKCLTNLKLLRINRCTRLK-- 128 (293)
Q Consensus 69 ~~~L~~L~l~~~~~~~~~-------~~~~~~L~~L~l~~~~~~----~l~~~-------~~~l~~L~~L~l~~~~~~~-- 128 (293)
+++|+.|++++|.+.... -..+.+|++|++++|.+. .+|.. +..+++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 458999999999855432 224668999999997654 33433 3688999999999998776
Q ss_pred --ccccccccccccceecccccccCCC----CChhhhcc---------ccCCceecCCCcccc-cCC---CcccccccCc
Q 039599 129 --RVSTSICKLKSLIALSAYGCLNLER----FPESLEKM---------EHLNQINLGRTTITE-QRP---SSFENVKGLE 189 (293)
Q Consensus 129 --~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~l---------~~L~~L~l~~n~~~~-~~~---~~~~~~~~L~ 189 (293)
.++..+..+++|++|++++|.+... ++..+..+ ++|++|++++|.++. .++ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 4667788899999999999977533 33334445 899999999999963 333 3566789999
Q ss_pred eecCCCC--c------cccccccCccccceecccCCCccC-----CCCcCCCCccCcccccCCccccceeecCCccCCc-
Q 039599 190 TLGFSEL--D------NLSDNIGNFKSFEYMGAHGSAISQ-----LPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS- 255 (293)
Q Consensus 190 ~L~l~~~--~------~l~~~~~~l~~L~~L~l~~~~~~~-----~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~- 255 (293)
.|++++| . ..+..+..+++|++|++++|.++. +|. .+..+++|++|++++|.+++
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-----------~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-----------ALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-----------HGGGCTTCCEEECTTCCCCHH
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-----------HHccCCCcCEEECCCCCCchh
Confidence 9999999 2 123377889999999999999852 233 25677899999999999986
Q ss_pred ----CCccc--CCCCCCcEEeccCCcCCC-----CchhH-hhcccCCCCC
Q 039599 256 ----IPQEI--GYLSSLEWLHLRGNNLEG-----LPASI-KQISRLESLD 293 (293)
Q Consensus 256 ----l~~~~--~~~~~L~~L~l~~n~l~~-----~p~~l-~~l~~L~~ld 293 (293)
++..+ ..+++|+.|++++|.+++ +|..+ ..+++|+.||
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 35566 349999999999999997 88877 4578888764
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.80 E-value=2.1e-21 Score=167.34 Aligned_cols=248 Identities=12% Similarity=0.102 Sum_probs=134.9
Q ss_pred EeecCcccceeechhhccCCccccEEEEeccceeeecccceEEEeccCCcccccCCCCC-CCc-CceEEeecCCcCCccc
Q 039599 9 FLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEISVHMSIEEQLLDSKGCKILRSFPSNL-HFV-SPVTIDFTSCINLTDF 86 (293)
Q Consensus 9 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~-~~~-~L~~L~l~~~~~~~~~ 86 (293)
+.+++.+...+..+..+...++|++|++++|.+...... .+...+ .++ +|++|++++|.+....
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~--------------~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 67 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTV--------------ELIQAFANTPASVTSLNLSGNSLGFKN 67 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHH--------------HHHHHHHTCCTTCCEEECCSSCGGGSC
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHH--------------HHHHHHHhCCCceeEEECcCCCCCHHH
Confidence 457778777766665666666699999988876532100 000111 123 5566666666533221
Q ss_pred CC--------CCCCccEEecccccccccCcc-----ccCC-CCCCEEEeccCccccccccccc----c-ccccceecccc
Q 039599 87 PH--------ISGNITRLYLDETAIEEVPSS-----IKCL-TNLKLLRINRCTRLKRVSTSIC----K-LKSLIALSAYG 147 (293)
Q Consensus 87 ~~--------~~~~L~~L~l~~~~~~~l~~~-----~~~l-~~L~~L~l~~~~~~~~~~~~l~----~-l~~L~~L~l~~ 147 (293)
+. ...+|++|++++|.++..+.. +..+ ++|++|++++|.+....+..+. . .++|++|++++
T Consensus 68 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 147 (362)
T 3goz_A 68 SDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG 147 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT
T ss_pred HHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC
Confidence 11 124566666666666543321 3333 5666666666665443333222 2 24666666666
Q ss_pred cccCCC----CChhhhccc-cCCceecCCCcccccCCCccc----cc-ccCceecCCCC--cc-----ccccccC-cccc
Q 039599 148 CLNLER----FPESLEKME-HLNQINLGRTTITEQRPSSFE----NV-KGLETLGFSEL--DN-----LSDNIGN-FKSF 209 (293)
Q Consensus 148 ~~~~~~----~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~----~~-~~L~~L~l~~~--~~-----l~~~~~~-l~~L 209 (293)
|.+... ++..+..++ +|++|++++|.+++..+..+. .+ ++|+.|++++| .. ++..+.. .++|
T Consensus 148 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L 227 (362)
T 3goz_A 148 NDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC
T ss_pred CcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc
Confidence 655532 223334443 667777777766554443332 23 46777777666 22 3444444 3467
Q ss_pred ceecccCCCccCCCC--cCCCCccCcccccCCccccceeecCCccCCc--------CCcccCCCCCCcEEeccCCcCCC
Q 039599 210 EYMGAHGSAISQLPS--LSSGLVPLSASLLSGLSLLYWLHLNNCALTS--------IPQEIGYLSSLEWLHLRGNNLEG 278 (293)
Q Consensus 210 ~~L~l~~~~~~~~~~--l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~--------l~~~~~~~~~L~~L~l~~n~l~~ 278 (293)
++|++++|.+.+.+. +.. .+..+++|++|++++|.+.+ ++..+..+++|+.||+++|++..
T Consensus 228 ~~L~Ls~N~l~~~~~~~l~~--------~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 228 VSLNLCLNCLHGPSLENLKL--------LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CEEECCSSCCCCCCHHHHHH--------TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred eEEECcCCCCCcHHHHHHHH--------HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 777777777666521 110 13456667777777776333 23345566777777777777664
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=3.4e-21 Score=164.29 Aligned_cols=218 Identities=17% Similarity=0.217 Sum_probs=168.9
Q ss_pred eEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCC--CCCccEEecccccccc--cCccccCCCCCCEEEeccC
Q 039599 49 EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHI--SGNITRLYLDETAIEE--VPSSIKCLTNLKLLRINRC 124 (293)
Q Consensus 49 l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~ 124 (293)
++.++++++.+.......+...+++.+++++|.+.+..+.. +.+|++|++++|.+.. ++..+..+++|++|++++|
T Consensus 49 ~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~ 128 (336)
T 2ast_B 49 WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 128 (336)
T ss_dssp SSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred heeeccccccCCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc
Confidence 77888888765421111111258999999999866555443 3589999999999863 6777889999999999999
Q ss_pred ccccccccccccccccceecccccc-cCC-CCChhhhccccCCceecCCC-ccccc-CCCcccccc-cCceecCCCC---
Q 039599 125 TRLKRVSTSICKLKSLIALSAYGCL-NLE-RFPESLEKMEHLNQINLGRT-TITEQ-RPSSFENVK-GLETLGFSEL--- 196 (293)
Q Consensus 125 ~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~-~L~~L~l~~~--- 196 (293)
.+....+..++.+++|++|++++|. +.+ .++..+..+++|++|++++| .+++. ++..+..++ +|+.|++++|
T Consensus 129 ~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~ 208 (336)
T 2ast_B 129 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN 208 (336)
T ss_dssp BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCccc
Confidence 8777778888899999999999994 443 36667889999999999999 88654 455677889 9999999998
Q ss_pred ---ccccccccCccccceecccCCC-ccCC-CCcCCCCccCcccccCCccccceeecCCcc-CCc-CCcccCCCCCCcEE
Q 039599 197 ---DNLSDNIGNFKSFEYMGAHGSA-ISQL-PSLSSGLVPLSASLLSGLSLLYWLHLNNCA-LTS-IPQEIGYLSSLEWL 269 (293)
Q Consensus 197 ---~~l~~~~~~l~~L~~L~l~~~~-~~~~-~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~-i~~-l~~~~~~~~~L~~L 269 (293)
..++..+..+++|++|++++|. +++. +. .+..+++|++|++++|. +++ ....+..+++|+.|
T Consensus 209 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-----------~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 209 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-----------EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 277 (336)
T ss_dssp SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-----------GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-----------HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence 3446667789999999999998 5443 22 25677999999999994 443 22357789999999
Q ss_pred eccCCcCCC
Q 039599 270 HLRGNNLEG 278 (293)
Q Consensus 270 ~l~~n~l~~ 278 (293)
++++| ++.
T Consensus 278 ~l~~~-i~~ 285 (336)
T 2ast_B 278 QVFGI-VPD 285 (336)
T ss_dssp ECTTS-SCT
T ss_pred eccCc-cCH
Confidence 99999 654
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=2.6e-19 Score=153.53 Aligned_cols=226 Identities=15% Similarity=0.162 Sum_probs=147.0
Q ss_pred EEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCC----CCCccEEecccccc-cccCc-cccCCCCCCEE-Eecc
Q 039599 51 LLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHI----SGNITRLYLDETAI-EEVPS-SIKCLTNLKLL-RINR 123 (293)
Q Consensus 51 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~L~~L~l~~~~~-~~l~~-~~~~l~~L~~L-~l~~ 123 (293)
.++++++. +..+|..+ ..++++|++++|. ++.+|.. +.+|++|++++|.+ +.++. +|.++++++++ .+.+
T Consensus 13 ~v~C~~~~-Lt~iP~~l-~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESK-VTEIPSDL-PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTT-CCSCCTTC-CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCC-CCccCcCc-CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 34455544 34566654 2378888888887 5556542 34678888888876 34554 56777777654 4444
Q ss_pred CccccccccccccccccceecccccccCCCCChhhhccccCCceecCC-CcccccCCCccccc-ccCceecCCCC--ccc
Q 039599 124 CTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR-TTITEQRPSSFENV-KGLETLGFSEL--DNL 199 (293)
Q Consensus 124 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~-~~L~~L~l~~~--~~l 199 (293)
|.+....+..+..+++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+ ..++.|++++| ..+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 555554456677788888888888866655555555566677777755 45544333445554 35777888877 566
Q ss_pred cccccCccccceecccC-CCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCC-cCC
Q 039599 200 SDNIGNFKSFEYMGAHG-SAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGN-NLE 277 (293)
Q Consensus 200 ~~~~~~l~~L~~L~l~~-~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n-~l~ 277 (293)
+.......+++++.+.+ |.++.+|.- .|.++++|++|++++|.|+.+|.. .+.+|+.|.+.++ .++
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~----------~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPND----------VFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLK 237 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTT----------TTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCC
T ss_pred ChhhccccchhHHhhccCCcccCCCHH----------HhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcC
Confidence 66666667788888764 666666531 256788889999999988888763 3667777776554 566
Q ss_pred CCchhHhhcccCCCC
Q 039599 278 GLPASIKQISRLESL 292 (293)
Q Consensus 278 ~~p~~l~~l~~L~~l 292 (293)
.+|. +..+++|+.+
T Consensus 238 ~lP~-l~~l~~L~~l 251 (350)
T 4ay9_X 238 KLPT-LEKLVALMEA 251 (350)
T ss_dssp CCCC-TTTCCSCCEE
T ss_pred cCCC-chhCcChhhC
Confidence 7774 6666766654
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=1.1e-18 Score=138.71 Aligned_cols=174 Identities=17% Similarity=0.178 Sum_probs=104.0
Q ss_pred EEeecCCcCCcccCCCC-CCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccccC
Q 039599 74 TIDFTSCINLTDFPHIS-GNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNL 151 (293)
Q Consensus 74 ~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 151 (293)
.++.+++. .+.+|... .++++|++++|.+..+++ .+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus 11 ~v~c~~~~-l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 11 TVECYSQG-RTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp EEECCSSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEecCCC-ccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence 34444444 34444332 356666777766666655 3566777777777776655443444566677777777776655
Q ss_pred CCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccc-cccCccccceecccCCCccCCCCcCCC
Q 039599 152 ERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSD-NIGNFKSFEYMGAHGSAISQLPSLSSG 228 (293)
Q Consensus 152 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~-~~~~l~~L~~L~l~~~~~~~~~~l~~~ 228 (293)
+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++| ..++. .+..+++|+++++++|.+..
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------- 162 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------- 162 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------
T ss_pred ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------
Confidence 444455666777777777777775544444566666666666666 23332 34556666666666665432
Q ss_pred CccCcccccCCccccceeecCCccCCc-CCcccCCCCC
Q 039599 229 LVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGYLSS 265 (293)
Q Consensus 229 l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~ 265 (293)
.+++|++|+++.|.+++ +|.+++.++.
T Consensus 163 ----------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ----------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ----------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ----------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 34556777777776665 6666665544
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.80 E-value=2.6e-21 Score=166.79 Aligned_cols=220 Identities=10% Similarity=0.041 Sum_probs=158.5
Q ss_pred EeccCCcccccCCCCCCCc-CceEEeecCCcCCcccC-------CCCC-CccEEecccccccccC-ccccCC-----CCC
Q 039599 52 LDSKGCKILRSFPSNLHFV-SPVTIDFTSCINLTDFP-------HISG-NITRLYLDETAIEEVP-SSIKCL-----TNL 116 (293)
Q Consensus 52 L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~-------~~~~-~L~~L~l~~~~~~~l~-~~~~~l-----~~L 116 (293)
..++++.+.+.+|..+..+ +|++|++++|.+....+ ...+ +|++|++++|.++... ..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566677666667666666 69999999999443322 1244 8999999999997653 345443 899
Q ss_pred CEEEeccCcccccccccccc----c-cccceecccccccCCCCChhhh----c-cccCCceecCCCcccccCCCc----c
Q 039599 117 KLLRINRCTRLKRVSTSICK----L-KSLIALSAYGCLNLERFPESLE----K-MEHLNQINLGRTTITEQRPSS----F 182 (293)
Q Consensus 117 ~~L~l~~~~~~~~~~~~l~~----l-~~L~~L~l~~~~~~~~~~~~~~----~-l~~L~~L~l~~n~~~~~~~~~----~ 182 (293)
++|++++|.+....+..+.. + ++|++|++++|.+.+..+..+. . .++|++|++++|.+++..... +
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 99999999877665554443 4 8999999999988766555443 3 368999999999997544333 3
Q ss_pred cccc-cCceecCCCC---ccc----cccccCc-cccceecccCCCccCCCC--cCCCCccCcccccCC-ccccceeecCC
Q 039599 183 ENVK-GLETLGFSEL---DNL----SDNIGNF-KSFEYMGAHGSAISQLPS--LSSGLVPLSASLLSG-LSLLYWLHLNN 250 (293)
Q Consensus 183 ~~~~-~L~~L~l~~~---~~l----~~~~~~l-~~L~~L~l~~~~~~~~~~--l~~~l~~l~~~~~~~-~~~L~~L~l~~ 250 (293)
...+ +|++|++++| ... ...+... ++|++|++++|.+..... +.. .+.. .++|++|++++
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~--------~l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY--------IFSSIPNHVVSLNLCL 234 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH--------HHHHSCTTCCEEECCS
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH--------HHhcCCCCceEEECcC
Confidence 4444 8999999999 222 2244455 599999999999887411 110 1222 45899999999
Q ss_pred ccCCcCC-----cccCCCCCCcEEeccCCcCCCC
Q 039599 251 CALTSIP-----QEIGYLSSLEWLHLRGNNLEGL 279 (293)
Q Consensus 251 n~i~~l~-----~~~~~~~~L~~L~l~~n~l~~~ 279 (293)
|.+++.+ ..+..+++|+.|++++|.+.++
T Consensus 235 N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i 268 (362)
T 3goz_A 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268 (362)
T ss_dssp SCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTC
T ss_pred CCCCcHHHHHHHHHHhcCCCccEEEeccCCcccc
Confidence 9998743 3357789999999999996653
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=3.5e-19 Score=161.09 Aligned_cols=182 Identities=17% Similarity=0.230 Sum_probs=135.7
Q ss_pred eEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCCCCCCccEEecccccccccCccccCCCCCCEEEeccCcccc
Q 039599 49 EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPHISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLK 128 (293)
Q Consensus 49 l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~ 128 (293)
++.|++++|.+.+ +|..+. ++|++|++++|. ++.+|..+.+|++|++++|.++.+|. +.. +|++|++++|.+.+
T Consensus 61 L~~L~Ls~n~L~~-lp~~l~-~~L~~L~Ls~N~-l~~ip~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 61 FSELQLNRLNLSS-LPDNLP-PQITVLEITQNA-LISLPELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTM 134 (571)
T ss_dssp CSEEECCSSCCSC-CCSCCC-TTCSEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSC
T ss_pred ccEEEeCCCCCCc-cCHhHc-CCCCEEECcCCC-CcccccccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCC
Confidence 6677777776544 666542 688899998888 44777666788888999888888887 554 88899998887665
Q ss_pred ccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCc
Q 039599 129 RVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNF 206 (293)
Q Consensus 129 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l 206 (293)
+|. .+++|++|++++|.+.+ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++| ..+|. +..
T Consensus 135 -lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~- 200 (571)
T 3cvr_A 135 -LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-VPV- 200 (571)
T ss_dssp -CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC--
T ss_pred -CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-HHH-
Confidence 555 57888899998887665 555 56788899999998865 665 54 88899999888 55665 433
Q ss_pred ccc-------ceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCc-CCcccCC
Q 039599 207 KSF-------EYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTS-IPQEIGY 262 (293)
Q Consensus 207 ~~L-------~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~ 262 (293)
+| +.|++++|.++.+|. .+..+++|+.|++++|.+++ +|..+..
T Consensus 201 -~L~~~~~~L~~L~Ls~N~l~~lp~-----------~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 201 -RNHHSEETEIFFRCRENRITHIPE-----------NILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp --------CCEEEECCSSCCCCCCG-----------GGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred -hhhcccccceEEecCCCcceecCH-----------HHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 66 999999999998876 23457889999999999887 6665544
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=5.7e-19 Score=140.28 Aligned_cols=178 Identities=15% Similarity=0.175 Sum_probs=146.3
Q ss_pred ccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCC
Q 039599 93 ITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRT 172 (293)
Q Consensus 93 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 172 (293)
-+.++.+++++..+|..+ .+++++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 357788888898888755 468999999999887655566789999999999999887666667889999999999999
Q ss_pred cccccCCCcccccccCceecCCCC--ccccc-cccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecC
Q 039599 173 TITEQRPSSFENVKGLETLGFSEL--DNLSD-NIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLN 249 (293)
Q Consensus 173 ~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~-~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~ 249 (293)
.+++..+..+..+++|++|++++| ..++. .+..+++|++|++++|.+.+++.- .+..+++|++|+++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~----------~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG----------VFDRLTSLQYIWLH 156 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT----------TTTTCTTCCEEECC
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH----------HhccCCCccEEEec
Confidence 997666666889999999999998 44443 467899999999999999888441 25678899999999
Q ss_pred CccCCcCCcccCCCCCCcEEeccCCcCCC-CchhHhhccc
Q 039599 250 NCALTSIPQEIGYLSSLEWLHLRGNNLEG-LPASIKQISR 288 (293)
Q Consensus 250 ~n~i~~l~~~~~~~~~L~~L~l~~n~l~~-~p~~l~~l~~ 288 (293)
+|.+. +.+++|+.|+++.|++++ +|+.++.++.
T Consensus 157 ~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 157 DNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp SCCBC------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCCee------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 99654 457789999999999997 8888776653
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=7.3e-18 Score=144.55 Aligned_cols=228 Identities=16% Similarity=0.099 Sum_probs=165.8
Q ss_pred cEEEEeccceeeec-cc--ceEEEeccCCcccccCCCCCC-CcCceEEeecCCcCCcccCCC-C---CCccE-Eeccccc
Q 039599 32 RVLKFYIPEISVHM-SI--EEQLLDSKGCKILRSFPSNLH-FVSPVTIDFTSCINLTDFPHI-S---GNITR-LYLDETA 102 (293)
Q Consensus 32 ~~L~l~~~~~~~~~-~~--~l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~-~---~~L~~-L~l~~~~ 102 (293)
+.++-++++++..+ .+ .+++|++++|.+...-+..+. +++|++|++++|.+.+.+|.. + .++.+ +.+..|+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 45566666665332 33 399999999986544334555 559999999999977777643 2 34444 4667788
Q ss_pred ccccCc-cccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCC-hhhhccc-cCCceecCCCcccccCC
Q 039599 103 IEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFP-ESLEKME-HLNQINLGRTTITEQRP 179 (293)
Q Consensus 103 ~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~-~L~~L~l~~n~~~~~~~ 179 (293)
+..+++ .|..+++|++|++++|.+....+..+....++..+++.++.....++ ..+..+. .++.|++++|.++. ++
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~ 170 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IH 170 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-EC
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CC
Confidence 988865 78999999999999998766555555567778888887765555444 4455554 68899999999965 44
Q ss_pred CcccccccCceecCCCC---ccccc-cccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCc-cCC
Q 039599 180 SSFENVKGLETLGFSEL---DNLSD-NIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNC-ALT 254 (293)
Q Consensus 180 ~~~~~~~~L~~L~l~~~---~~l~~-~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n-~i~ 254 (293)
.......+|+.+.+.++ +.++. .+..+++|++|++++|.++.+|. ..+.+|+.|.+.++ .++
T Consensus 171 ~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-------------~~~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-------------YGLENLKKLRARSTYNLK 237 (350)
T ss_dssp TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-------------SSCTTCCEEECTTCTTCC
T ss_pred hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-------------hhhccchHhhhccCCCcC
Confidence 44445678999999864 56664 56889999999999999999865 23455666666555 567
Q ss_pred cCCcccCCCCCCcEEeccCC
Q 039599 255 SIPQEIGYLSSLEWLHLRGN 274 (293)
Q Consensus 255 ~l~~~~~~~~~L~~L~l~~n 274 (293)
.+|. +..+++|+.++++++
T Consensus 238 ~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 238 KLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp CCCC-TTTCCSCCEEECSCH
T ss_pred cCCC-chhCcChhhCcCCCC
Confidence 7884 788999999999764
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=1.3e-18 Score=136.98 Aligned_cols=151 Identities=13% Similarity=0.178 Sum_probs=97.3
Q ss_pred cCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCce
Q 039599 111 KCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLET 190 (293)
Q Consensus 111 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 190 (293)
..+++|++|++++|.+. .++ .+..+++|++|++++|... . ++.+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34455556666555443 233 3555556666666655221 1 234556666666666666665555556666666777
Q ss_pred ecCCCC---ccccccccCccccceecccCCC-ccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCC
Q 039599 191 LGFSEL---DNLSDNIGNFKSFEYMGAHGSA-ISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSL 266 (293)
Q Consensus 191 L~l~~~---~~l~~~~~~l~~L~~L~l~~~~-~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L 266 (293)
|++++| ...+..+..+++|++|++++|. +..+|. +..+++|++|++++|.+++++ .+..+++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~------------l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L 183 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP------------LKTLPELKSLNIQFDGVHDYR-GIEDFPKL 183 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG------------GGGCSSCCEEECTTBCCCCCT-TGGGCSSC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh------------hcCCCCCCEEECCCCCCcChH-HhccCCCC
Confidence 766666 2345566677777888888886 666543 567888999999999998877 67889999
Q ss_pred cEEeccCCcCCC
Q 039599 267 EWLHLRGNNLEG 278 (293)
Q Consensus 267 ~~L~l~~n~l~~ 278 (293)
+.|++++|++.+
T Consensus 184 ~~L~l~~N~i~~ 195 (197)
T 4ezg_A 184 NQLYAFSQTIGG 195 (197)
T ss_dssp CEEEECBC----
T ss_pred CEEEeeCcccCC
Confidence 999999998764
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=4.5e-18 Score=155.31 Aligned_cols=143 Identities=20% Similarity=0.278 Sum_probs=63.7
Q ss_pred CceEEeecCCcCCcccCC--CCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceeccccc
Q 039599 71 SPVTIDFTSCINLTDFPH--ISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGC 148 (293)
Q Consensus 71 ~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 148 (293)
+|+.|++++|. +..++. .+.+|+.|++++|.+..+++ +..+++|+.|++++|.+.. ++ .+..+++|+.|++++|
T Consensus 44 ~L~~L~l~~n~-i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N 119 (605)
T 1m9s_A 44 SIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHN 119 (605)
T ss_dssp TCCCCBCTTCC-CCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTS
T ss_pred CCCEEECcCCC-CCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCC
Confidence 45555555554 223321 12345555555555544443 4455555555555544332 11 3444555555555554
Q ss_pred ccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCC
Q 039599 149 LNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQL 222 (293)
Q Consensus 149 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~ 222 (293)
.+.+ + +.+..+++|+.|++++|.+.+. ..+..+++|+.|++++| ..++. +..+++|+.|++++|.+.++
T Consensus 120 ~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 120 GISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp CCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred CCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC
Confidence 4332 1 2344445555555555544332 33444444444444444 22221 34444444444444444433
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=2.9e-18 Score=143.26 Aligned_cols=170 Identities=19% Similarity=0.274 Sum_probs=146.8
Q ss_pred CCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceec
Q 039599 90 SGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINL 169 (293)
Q Consensus 90 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 169 (293)
+.+|++|++++|.+..++. +..+++|++|++++|.+....+ +..+++|++|++++|.+.+ + +.+..+++|++|++
T Consensus 45 l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEEC
T ss_pred cCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEEC
Confidence 4589999999999998864 8889999999999998766433 8899999999999997654 3 44899999999999
Q ss_pred CCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceee
Q 039599 170 GRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLH 247 (293)
Q Consensus 170 ~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~ 247 (293)
++|.+.+. ..+..+++|+.|++++| ..+ ..+..+++|++|++++|.+.+++. +..+++|++|+
T Consensus 120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~------------l~~l~~L~~L~ 184 (291)
T 1h6t_A 120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP------------LAGLTKLQNLY 184 (291)
T ss_dssp TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG------------GTTCTTCCEEE
T ss_pred CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh------------hcCCCccCEEE
Confidence 99999653 56888999999999999 444 578899999999999999988754 46789999999
Q ss_pred cCCccCCcCCcccCCCCCCcEEeccCCcCCCCc
Q 039599 248 LNNCALTSIPQEIGYLSSLEWLHLRGNNLEGLP 280 (293)
Q Consensus 248 l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p 280 (293)
+++|.+++++. +..+++|+.|++++|+++..|
T Consensus 185 L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 185 LSKNHISDLRA-LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred CCCCcCCCChh-hccCCCCCEEECcCCcccCCc
Confidence 99999999875 889999999999999988654
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=2.8e-18 Score=135.13 Aligned_cols=148 Identities=12% Similarity=0.162 Sum_probs=81.6
Q ss_pred CccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCC
Q 039599 92 NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR 171 (293)
Q Consensus 92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 171 (293)
++++|++++|.+..+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 45 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 45 SLTYITLANINVTDLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp TCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred CccEEeccCCCccChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 4444455555455444 3455555555555555322 122344555555555555555444445555555566666666
Q ss_pred CcccccCCCcccccccCceecCCCC---ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeec
Q 039599 172 TTITEQRPSSFENVKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHL 248 (293)
Q Consensus 172 n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l 248 (293)
|.+++..+..+..+++|+.|++++| ..++ .+..+++|++|++++|.+.+++. +..+++|++|++
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~------------l~~l~~L~~L~l 188 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRG------------IEDFPKLNQLYA 188 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTT------------GGGCSSCCEEEE
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHH------------hccCCCCCEEEe
Confidence 5555444445555556666666555 2233 45566677777777777766643 456777888888
Q ss_pred CCccCCc
Q 039599 249 NNCALTS 255 (293)
Q Consensus 249 ~~n~i~~ 255 (293)
++|+|.+
T Consensus 189 ~~N~i~~ 195 (197)
T 4ezg_A 189 FSQTIGG 195 (197)
T ss_dssp CBC----
T ss_pred eCcccCC
Confidence 8887653
No 102
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=1.9e-20 Score=169.98 Aligned_cols=189 Identities=17% Similarity=0.155 Sum_probs=153.0
Q ss_pred CCCccEEecccccccccCccccCCCCCCEEEeccCc-------------cccccccccccccccceec-ccccccCCCCC
Q 039599 90 SGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCT-------------RLKRVSTSICKLKSLIALS-AYGCLNLERFP 155 (293)
Q Consensus 90 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~l~~l~~L~~L~-l~~~~~~~~~~ 155 (293)
..+|+.|++++|.++.+|+.++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.+.+. .++
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~L~ 426 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-DLR 426 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-HHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-hhh
Confidence 457889999999999999999999999999987653 3445566777888888888 5554321 111
Q ss_pred h------hhhc--cccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCc
Q 039599 156 E------SLEK--MEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSL 225 (293)
Q Consensus 156 ~------~~~~--l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l 225 (293)
. .+.. ...|+.|++++|.+++ +|. +..+++|+.|++++| ..+|..++.+++|+.|++++|.++++|.
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~- 503 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG- 503 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-
T ss_pred hhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcc-
Confidence 1 1111 1358999999999965 665 899999999999999 7788999999999999999999998875
Q ss_pred CCCCccCcccccCCccccceeecCCccCCcC--CcccCCCCCCcEEeccCCcCCCCchh----HhhcccCCCCC
Q 039599 226 SSGLVPLSASLLSGLSLLYWLHLNNCALTSI--PQEIGYLSSLEWLHLRGNNLEGLPAS----IKQISRLESLD 293 (293)
Q Consensus 226 ~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l--~~~~~~~~~L~~L~l~~n~l~~~p~~----l~~l~~L~~ld 293 (293)
++.+++|++|++++|.|+++ |..+..+++|+.|++++|+++++|+. +..+++|+.||
T Consensus 504 -----------l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 504 -----------VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp -----------GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred -----------cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 67889999999999999996 89999999999999999999986543 33478888764
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=5.1e-18 Score=139.67 Aligned_cols=142 Identities=19% Similarity=0.258 Sum_probs=68.7
Q ss_pred CceEEeecCCcCCcccC--CCCCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceeccccc
Q 039599 71 SPVTIDFTSCINLTDFP--HISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGC 148 (293)
Q Consensus 71 ~L~~L~l~~~~~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 148 (293)
++..++++++. .++++ ..+.+|++|++++|++..++ .+..+++|++|++++|.+... +. +..+++|++|++++|
T Consensus 20 ~l~~l~l~~~~-i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 20 NAVKQNLGKQS-VTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHTCSC-TTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSS
T ss_pred HHHHHHhcCCC-cccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCC
Confidence 34444555554 22222 12335556666666655555 455556666666665554432 22 555555666666555
Q ss_pred ccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCC
Q 039599 149 LNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQL 222 (293)
Q Consensus 149 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~ 222 (293)
.+.+ ++.. .. ++|++|++++|.+++. +.+..+++|+.|++++| ..++ .+..+++|++|++++|.+.+.
T Consensus 96 ~l~~-l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 96 RLKN-LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CCSC-CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred ccCC-cCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch
Confidence 4433 2221 11 5555555555555432 23445555555555555 2222 344445555555555544444
No 104
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=3.6e-19 Score=162.98 Aligned_cols=285 Identities=14% Similarity=0.159 Sum_probs=144.2
Q ss_pred eEEEEeecCcccceeech--hhccCCccccEEEEeccceeeec----------ccceEEEeccCCcccc----cCCCCC-
Q 039599 5 IESIFLNLSTIKGINLNL--RAFSNMSNLRVLKFYIPEISVHM----------SIEEQLLDSKGCKILR----SFPSNL- 67 (293)
Q Consensus 5 ~~~i~l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~----------~~~l~~L~l~~~~~~~----~~~~~~- 67 (293)
++.+ ++++|....... .....+++|++|++++|.+.... .-.|++|++++|...+ .++..+
T Consensus 140 L~~L--~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 140 LETL--KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp CCEE--EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred CcEE--ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence 4445 666665322211 12347788888888888764221 0127778887776541 122221
Q ss_pred CCcCceEEeecCCcCCcccC------------------------------CCCCCccEEecccccccccCccccCCCCCC
Q 039599 68 HFVSPVTIDFTSCINLTDFP------------------------------HISGNITRLYLDETAIEEVPSSIKCLTNLK 117 (293)
Q Consensus 68 ~~~~L~~L~l~~~~~~~~~~------------------------------~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~ 117 (293)
.+++|+.|++++|...+ +| ..+.+|+.++++++....+|..+..+++|+
T Consensus 218 ~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR 296 (592)
T ss_dssp HCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCC
T ss_pred hCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCc
Confidence 24577777777765321 11 112244555555444445555556666777
Q ss_pred EEEeccCccccccc-cccccccccceecccccccCCCCChhhhccccCCceecCC-----------CcccccCCCc-ccc
Q 039599 118 LLRINRCTRLKRVS-TSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR-----------TTITEQRPSS-FEN 184 (293)
Q Consensus 118 ~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-----------n~~~~~~~~~-~~~ 184 (293)
+|++++|.+..... ..+..+++|++|+++.+.....++.....+++|++|++++ +.+++..... ...
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~ 376 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh
Confidence 77777766433222 2245566666666663311122223334556666666662 3333221111 233
Q ss_pred cccCceecCCCC---cccccccc-Cccccceeccc----CCCccCCCC---c------CCCCccCcccc-----------
Q 039599 185 VKGLETLGFSEL---DNLSDNIG-NFKSFEYMGAH----GSAISQLPS---L------SSGLVPLSASL----------- 236 (293)
Q Consensus 185 ~~~L~~L~l~~~---~~l~~~~~-~l~~L~~L~l~----~~~~~~~~~---l------~~~l~~l~~~~----------- 236 (293)
+++|+.|++..+ +.....+. .+++|+.|++. .+.+++.|. + .++|+.|+++.
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 566666666433 11122222 25566666664 344444321 0 14455555421
Q ss_pred --cCCccccceeecCCccCCc--CCcccCCCCCCcEEeccCCcCCC--CchhHhhcccCCCC
Q 039599 237 --LSGLSLLYWLHLNNCALTS--IPQEIGYLSSLEWLHLRGNNLEG--LPASIKQISRLESL 292 (293)
Q Consensus 237 --~~~~~~L~~L~l~~n~i~~--l~~~~~~~~~L~~L~l~~n~l~~--~p~~l~~l~~L~~l 292 (293)
...+++|++|++++|.+++ ++..+..+++|+.|++++|.+++ ++..+..+++|+.|
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 518 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL 518 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEE
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCee
Confidence 1135667777777776665 44445666777777777776653 44444556666554
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=4.1e-17 Score=130.65 Aligned_cols=149 Identities=12% Similarity=0.112 Sum_probs=104.8
Q ss_pred eEEeecCCcCCcccCCCCC-CccEEecccccccccCc--cccCCCCCCEEEeccCccccccccccccccccceecccccc
Q 039599 73 VTIDFTSCINLTDFPHISG-NITRLYLDETAIEEVPS--SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL 149 (293)
Q Consensus 73 ~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 149 (293)
+.++++++. ++.+|..+. .+++|++++|.+..+++ .+..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 14 ~~l~~s~n~-l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCC-cccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 466777766 555665543 56777888777776643 46777888888888877666555567777788888888877
Q ss_pred cCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccc-cccccCccccceecccCCCccCC
Q 039599 150 NLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNL-SDNIGNFKSFEYMGAHGSAISQL 222 (293)
Q Consensus 150 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l-~~~~~~l~~L~~L~l~~~~~~~~ 222 (293)
+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++| ..+ +..+..+++|+++++++|.+...
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 76666666777788888888888877666667777777777777777 333 55666677777777777766544
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.5e-17 Score=143.22 Aligned_cols=175 Identities=20% Similarity=0.167 Sum_probs=97.8
Q ss_pred eEEeecCCcCCcccCCCCC-CccEEecccccccccCcc-cc-CCCCCCEEEeccCccccccccccccccccceecccccc
Q 039599 73 VTIDFTSCINLTDFPHISG-NITRLYLDETAIEEVPSS-IK-CLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL 149 (293)
Q Consensus 73 ~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~~-~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 149 (293)
+.++.+++. ++.+|..++ .++.|++++|.+..++.. +. .+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 21 ~~l~c~~~~-l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQ-LPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSC-CSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCC-cCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 456666665 555665443 566777777777666553 33 66677777777666555444556666666666666665
Q ss_pred cCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCCccccccccCccccceecccCCCccCCCC-cCCC
Q 039599 150 NLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAHGSAISQLPS-LSSG 228 (293)
Q Consensus 150 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-l~~~ 228 (293)
+....+..|..+++|++|++++|.+.+..+..|..+++|+.|+ +++|.+..+|. ...
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~---------------------L~~N~l~~l~~~~~~- 157 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY---------------------LSQNQISRFPVELIK- 157 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE---------------------CCSSCCCSCCGGGTC-
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE---------------------CCCCcCCeeCHHHhc-
Confidence 5444444556666666666666666554444455555555554 44455554432 100
Q ss_pred CccCcccccCCccccceeecCCccCCcCCc-ccCCCCC--CcEEeccCCcCC
Q 039599 229 LVPLSASLLSGLSLLYWLHLNNCALTSIPQ-EIGYLSS--LEWLHLRGNNLE 277 (293)
Q Consensus 229 l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~~~~--L~~L~l~~n~l~ 277 (293)
.+..+++|+.|++++|.|+.+|. .+..++. ++.|++++|.+.
T Consensus 158 -------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 158 -------DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -----------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred -------CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 01345566666666666666542 3444554 355666666654
No 107
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=1.2e-19 Score=166.19 Aligned_cols=265 Identities=13% Similarity=0.094 Sum_probs=142.3
Q ss_pred CCccccEEEEeccceeeec-----cc--c-eEEEeccCCccccc--CCCCC-CCcCceEEeecCCcCCcc-------cCC
Q 039599 27 NMSNLRVLKFYIPEISVHM-----SI--E-EQLLDSKGCKILRS--FPSNL-HFVSPVTIDFTSCINLTD-------FPH 88 (293)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~-----~~--~-l~~L~l~~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~~-------~~~ 88 (293)
.+++|++|++++|.+.... .. . |++|++++|..... ++... .+++|++|++++|.+... ++.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 6777888888877654221 11 2 77788877752211 11111 345777777777764222 233
Q ss_pred CCCCccEEeccccccc-----ccCccccCCCCCCEEEeccCccccccccccccccccceecccccc--------------
Q 039599 89 ISGNITRLYLDETAIE-----EVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL-------------- 149 (293)
Q Consensus 89 ~~~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------------- 149 (293)
.+.+|++|++++|.+. .++..+.++++|++|++++|...+ ++..+..+++|++|+++...
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 4567777777777664 223344566777777777765433 44444555555555554211
Q ss_pred ------------cCCCCChhhhccccCCceecCCCcccccCC-CcccccccCceecCCCC---ccccccccCccccceec
Q 039599 150 ------------NLERFPESLEKMEHLNQINLGRTTITEQRP-SSFENVKGLETLGFSEL---DNLSDNIGNFKSFEYMG 213 (293)
Q Consensus 150 ------------~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~ 213 (293)
....++..+..+++|++|++++|.+++... ..+..+++|+.|++..+ ..++.....+++|++|+
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence 223445556667777777777777543322 22456777777777644 23343445567777777
Q ss_pred ccC-----------CCccCC--CCc---CCCCccCcccc----------cC-CccccceeecC----CccCCcCC-----
Q 039599 214 AHG-----------SAISQL--PSL---SSGLVPLSASL----------LS-GLSLLYWLHLN----NCALTSIP----- 257 (293)
Q Consensus 214 l~~-----------~~~~~~--~~l---~~~l~~l~~~~----------~~-~~~~L~~L~l~----~n~i~~l~----- 257 (293)
+++ +.++.. +.+ .+.++.|++.. ++ .+++|++|+++ .|.+++.|
T Consensus 349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~ 428 (592)
T 3ogk_B 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV 428 (592)
T ss_dssp EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHH
T ss_pred eecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHH
Confidence 773 333321 111 13445544421 11 25566666664 34555432
Q ss_pred -cccCCCCCCcEEeccCCc--CCC-CchhHhh-cccCCCC
Q 039599 258 -QEIGYLSSLEWLHLRGNN--LEG-LPASIKQ-ISRLESL 292 (293)
Q Consensus 258 -~~~~~~~~L~~L~l~~n~--l~~-~p~~l~~-l~~L~~l 292 (293)
..+..+++|+.|++++|. +++ .+..+.. +++|+.|
T Consensus 429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L 468 (592)
T 3ogk_B 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM 468 (592)
T ss_dssp HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEE
T ss_pred HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEe
Confidence 123456667777776443 443 2223332 5555544
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=8.2e-17 Score=129.73 Aligned_cols=123 Identities=20% Similarity=0.181 Sum_probs=58.2
Q ss_pred ceEEeecCCcCCcccCCCC-CCccEEecccccccccC-ccccCCCCCCEEEeccCccccccccccccccccceecccccc
Q 039599 72 PVTIDFTSCINLTDFPHIS-GNITRLYLDETAIEEVP-SSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL 149 (293)
Q Consensus 72 L~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 149 (293)
-+.++.+++. ++.+|..+ .++++|++++|.+..++ ..+..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 21 ~~~v~c~~~~-l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKR-HASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCC-cCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 3345555444 44444432 35555555555555442 344555555555555555433222334445555555555554
Q ss_pred cCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC
Q 039599 150 NLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL 196 (293)
Q Consensus 150 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~ 196 (293)
+.+..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSS
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCC
Confidence 44333333445555555555555553 33444444444444444444
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=8.4e-17 Score=128.83 Aligned_cols=148 Identities=18% Similarity=0.240 Sum_probs=95.9
Q ss_pred eEEeecCCcCCcccCCCC-CCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceeccccccc
Q 039599 73 VTIDFTSCINLTDFPHIS-GNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLN 150 (293)
Q Consensus 73 ~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 150 (293)
+.++.+++. ++.+|..+ .++++|++++|.+..+++ .|..+++|++|++++|.+....|..+..+++|++|++++|.+
T Consensus 14 ~~v~c~~~~-l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSC-CSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCC-cCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 355666555 55555543 367777777777776665 566777777777777776665566677777777777777766
Q ss_pred CCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--cccc-ccccCccccceecccCCCccC
Q 039599 151 LERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLS-DNIGNFKSFEYMGAHGSAISQ 221 (293)
Q Consensus 151 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~-~~~~~l~~L~~L~l~~~~~~~ 221 (293)
....+..+..+++|++|++++|.+++..+..|..+++|+.|++++| ..++ ..+..+++|+++++++|++..
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 5444445667777777777777776666666666677777777666 3332 345556666666666666544
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=2.3e-17 Score=141.98 Aligned_cols=171 Identities=15% Similarity=0.151 Sum_probs=131.8
Q ss_pred EEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccCC----CCCCccEEecccccccccCc-cccCCCCCCEEEeccC
Q 039599 50 QLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFPH----ISGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRC 124 (293)
Q Consensus 50 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~ 124 (293)
+.++++++. +..+|..+. ..++.|++++|.+....+. .+.+|++|++++|.+..+++ .|..+++|++|++++|
T Consensus 21 ~~l~c~~~~-l~~iP~~~~-~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQ-LPNVPQSLP-SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSC-CSSCCSSCC-TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCC-cCccCccCC-CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 467777775 445676442 3799999999985443332 45689999999999998875 6899999999999999
Q ss_pred ccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcc---cccccCceecCCCC--ccc
Q 039599 125 TRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSF---ENVKGLETLGFSEL--DNL 199 (293)
Q Consensus 125 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~l~~~--~~l 199 (293)
.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..| ..+++|+.|++++| ..+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 8776666678899999999999998887778889999999999999999965433334 56888999999888 444
Q ss_pred c-ccccCccc--cceecccCCCccCC
Q 039599 200 S-DNIGNFKS--FEYMGAHGSAISQL 222 (293)
Q Consensus 200 ~-~~~~~l~~--L~~L~l~~~~~~~~ 222 (293)
+ ..+..++. ++.+++++|++...
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred CHHHhhhccHhhcceEEecCCCccCC
Confidence 3 34555555 47788888887654
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=7.4e-17 Score=129.15 Aligned_cols=128 Identities=16% Similarity=0.198 Sum_probs=92.3
Q ss_pred ccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCC
Q 039599 93 ITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRT 172 (293)
Q Consensus 93 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 172 (293)
-+.++.++++++++|..+. +++++|++++|.+....+..+..+++|++|++++|.+.+..|..|..+++|++|++++|
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3678888899998887654 68999999998877655567788888999999888777766788888888888888888
Q ss_pred cccccCCCcccccccCceecCCCC--c-cccccccCccccceecccCCCccCC
Q 039599 173 TITEQRPSSFENVKGLETLGFSEL--D-NLSDNIGNFKSFEYMGAHGSAISQL 222 (293)
Q Consensus 173 ~~~~~~~~~~~~~~~L~~L~l~~~--~-~l~~~~~~l~~L~~L~l~~~~~~~~ 222 (293)
.++...+..|..+++|+.|++++| . ..+..+..+++|++|++++|.+.++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 143 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI 143 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEE
Confidence 886544444666677777776666 2 2233444555555555555555554
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1.3e-16 Score=145.74 Aligned_cols=166 Identities=17% Similarity=0.227 Sum_probs=101.9
Q ss_pred eEEEeccCCcccccCCCCCCCcCceEEeecCCcCCcccC-CCCCCccEEecccccccccCccccCCCCCCEEEeccCccc
Q 039599 49 EQLLDSKGCKILRSFPSNLHFVSPVTIDFTSCINLTDFP-HISGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRL 127 (293)
Q Consensus 49 l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~ 127 (293)
|+.|++++|.+ ..++..-.+++|+.|++++|.+....| ..+.+|+.|++++|.+..++ .+..+++|++|++++|.+.
T Consensus 45 L~~L~l~~n~i-~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~ 122 (605)
T 1m9s_A 45 IDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGIS 122 (605)
T ss_dssp CCCCBCTTCCC-CCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCC
T ss_pred CCEEECcCCCC-CCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCC
Confidence 66677766653 333433334477777777776332221 22446777777777776655 4666777777777776654
Q ss_pred cccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccC
Q 039599 128 KRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGN 205 (293)
Q Consensus 128 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~ 205 (293)
. + ..+..+++|+.|++++|.+.+. +.+..+++|++|++++|.+.+..+ +..+++|+.|++++| ..+ ..+..
T Consensus 123 ~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~ 195 (605)
T 1m9s_A 123 D-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAG 195 (605)
T ss_dssp C-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTT
T ss_pred C-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHcc
Confidence 4 2 3356667777777777655543 456667777777777777754433 666677777777776 333 34566
Q ss_pred ccccceecccCCCccCCC
Q 039599 206 FKSFEYMGAHGSAISQLP 223 (293)
Q Consensus 206 l~~L~~L~l~~~~~~~~~ 223 (293)
+++|+.|++++|.+...|
T Consensus 196 l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 196 LKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CTTCSEEECCSEEEECCC
T ss_pred CCCCCEEEccCCcCcCCc
Confidence 677777777777666654
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=1.6e-16 Score=127.12 Aligned_cols=129 Identities=16% Similarity=0.132 Sum_probs=87.6
Q ss_pred CccEEecccccccccCccccCCCCCCEEEeccCccccccc-cccccccccceecccccccCCCCChhhhccccCCceecC
Q 039599 92 NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVS-TSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLG 170 (293)
Q Consensus 92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 170 (293)
.-+.++++++.++.+|..+. +.+++|++++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 12 ~~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 12 EGTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 34688999999988887653 456899999988766534 346778888888888887666556677888888888888
Q ss_pred CCcccccCCCcccccccCceecCCCC--cc-ccccccCccccceecccCCCccCC
Q 039599 171 RTTITEQRPSSFENVKGLETLGFSEL--DN-LSDNIGNFKSFEYMGAHGSAISQL 222 (293)
Q Consensus 171 ~n~~~~~~~~~~~~~~~L~~L~l~~~--~~-l~~~~~~l~~L~~L~l~~~~~~~~ 222 (293)
+|.+++..+..|..+++|++|++++| .. .+..+..+++|++|++++|.+.++
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE
Confidence 88886655555666666666666665 22 233444445555555555554444
No 114
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=2.3e-19 Score=164.23 Aligned_cols=54 Identities=17% Similarity=0.106 Sum_probs=37.4
Q ss_pred ccccceeecCCccCCc-CCccc-CCCCCCcEEeccCCcCCC--CchhHhhcccCCCCC
Q 039599 240 LSLLYWLHLNNCALTS-IPQEI-GYLSSLEWLHLRGNNLEG--LPASIKQISRLESLD 293 (293)
Q Consensus 240 ~~~L~~L~l~~n~i~~-l~~~~-~~~~~L~~L~l~~n~l~~--~p~~l~~l~~L~~ld 293 (293)
+++|++|++++|.+++ .+..+ ..+++|+.|++++|.+++ ++..+..+++|+.|+
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 512 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW 512 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEE
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEe
Confidence 6778888888888766 22223 568889999999998864 333444577777653
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=6.2e-16 Score=124.55 Aligned_cols=151 Identities=17% Similarity=0.127 Sum_probs=103.2
Q ss_pred CccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCC
Q 039599 92 NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR 171 (293)
Q Consensus 92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 171 (293)
.-+.++.++++++.+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 46678888888888887554 7899999999888776677788888899999988877554456678888888888888
Q ss_pred CcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecC
Q 039599 172 TTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLN 249 (293)
Q Consensus 172 n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~ 249 (293)
|.+++..+..|..+++|+.|++++| ..+|..+..+++|++|++++|.+..+|.- .+..+++|+.|+++
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~----------~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHG----------AFDRLSSLTHAYLF 167 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTT----------TTTTCTTCCEEECT
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHH----------HHhCCCCCCEEEee
Confidence 8887655555666777777776666 44455555555555555555555544220 13344455555555
Q ss_pred CccCC
Q 039599 250 NCALT 254 (293)
Q Consensus 250 ~n~i~ 254 (293)
+|.+.
T Consensus 168 ~N~~~ 172 (229)
T 3e6j_A 168 GNPWD 172 (229)
T ss_dssp TSCBC
T ss_pred CCCcc
Confidence 55444
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=2.6e-17 Score=135.42 Aligned_cols=169 Identities=15% Similarity=0.226 Sum_probs=141.6
Q ss_pred CCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecC
Q 039599 91 GNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLG 170 (293)
Q Consensus 91 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 170 (293)
.++..++++++.+..++ .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+. +. +..+++|++|+++
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECC
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECC
Confidence 35667788999988877 57889999999999997654 44 688999999999999976654 44 8999999999999
Q ss_pred CCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeec
Q 039599 171 RTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHL 248 (293)
Q Consensus 171 ~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l 248 (293)
+|.+++ ++.. .. ++|+.|++++| ..++ .+..+++|++|++++|.+++++. ++.+++|++|++
T Consensus 94 ~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~------------l~~l~~L~~L~L 157 (263)
T 1xeu_A 94 RNRLKN-LNGI-PS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIVM------------LGFLSKLEVLDL 157 (263)
T ss_dssp SSCCSC-CTTC-CC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCGG------------GGGCTTCCEEEC
T ss_pred CCccCC-cCcc-cc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCChH------------HccCCCCCEEEC
Confidence 999965 4433 23 89999999999 4443 68899999999999999988754 568899999999
Q ss_pred CCccCCcCCcccCCCCCCcEEeccCCcCCCCch
Q 039599 249 NNCALTSIPQEIGYLSSLEWLHLRGNNLEGLPA 281 (293)
Q Consensus 249 ~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~p~ 281 (293)
++|.++++ ..+..+++|+.|++++|+++..|.
T Consensus 158 ~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 158 HGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp TTSCCCBC-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred CCCcCcch-HHhccCCCCCEEeCCCCcccCCcc
Confidence 99999988 568899999999999999987553
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=2.1e-16 Score=121.08 Aligned_cols=137 Identities=18% Similarity=0.256 Sum_probs=83.4
Q ss_pred CCCCEEEeccCccc-cccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceec
Q 039599 114 TNLKLLRINRCTRL-KRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLG 192 (293)
Q Consensus 114 ~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 192 (293)
++|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~------------- 88 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD------------- 88 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC-------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH-------------
Confidence 45666666665544 34444445555555555555543332 344555555555555555543333
Q ss_pred CCCCccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCc----ccCCCCCCcE
Q 039599 193 FSELDNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQ----EIGYLSSLEW 268 (293)
Q Consensus 193 l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~----~~~~~~~L~~ 268 (293)
..+..+++|++|++++|.+.++|.+ ..+..+++|++|++++|.++++|. .+..+++|+.
T Consensus 89 --------~~~~~l~~L~~L~Ls~N~l~~~~~~---------~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 89 --------MLAEKLPNLTHLNLSGNKLKDISTL---------EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp --------HHHHHCTTCCEEECBSSSCCSSGGG---------GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred --------HHHhhCCCCCEEeccCCccCcchhH---------HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence 3333455566666666666665320 025677888888888888888765 6788888999
Q ss_pred EeccCCcCCCCchh
Q 039599 269 LHLRGNNLEGLPAS 282 (293)
Q Consensus 269 L~l~~n~l~~~p~~ 282 (293)
|++++|.+..+|+.
T Consensus 152 L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 152 LDGYDREDQEAPDS 165 (168)
T ss_dssp ETTEETTSCBCCSS
T ss_pred ecCCCCChhhcccc
Confidence 99988888877653
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=1.7e-15 Score=115.96 Aligned_cols=104 Identities=16% Similarity=0.233 Sum_probs=76.6
Q ss_pred CCccEEeccccccc--ccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCcee
Q 039599 91 GNITRLYLDETAIE--EVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQIN 168 (293)
Q Consensus 91 ~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 168 (293)
.++++|++++|.+. .+|..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 46777777777776 7777777888888888888876554 5677888888888888877776777777788888998
Q ss_pred cCCCcccccCC-CcccccccCceecCCCC
Q 039599 169 LGRTTITEQRP-SSFENVKGLETLGFSEL 196 (293)
Q Consensus 169 l~~n~~~~~~~-~~~~~~~~L~~L~l~~~ 196 (293)
+++|.+++... ..+..+++|+.|++++|
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence 88888854311 34555555555555554
No 119
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.63 E-value=2.4e-18 Score=157.49 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=32.8
Q ss_pred CCccccceeecCCccCCc--CCcccCCCCCCcEEeccCCcCC
Q 039599 238 SGLSLLYWLHLNNCALTS--IPQEIGYLSSLEWLHLRGNNLE 277 (293)
Q Consensus 238 ~~~~~L~~L~l~~n~i~~--l~~~~~~~~~L~~L~l~~n~l~ 277 (293)
.++++|++|++++|.+++ +...+..+++|+.|++++|+++
T Consensus 478 ~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 478 SGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred hcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 467899999999999866 3334566899999999999985
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=2.7e-16 Score=146.82 Aligned_cols=129 Identities=16% Similarity=0.073 Sum_probs=85.9
Q ss_pred CCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecC
Q 039599 91 GNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLG 170 (293)
Q Consensus 91 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 170 (293)
..|+.|++++|.+..+|..+..+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..+..+++|++|+++
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECC
T ss_pred CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECC
Confidence 4677777777777777776667777777777777655 56666777777777777777655 667777777777777777
Q ss_pred CCcccccCCCcccccccCceecCCCC---ccccccccCcc-ccceecccCCCccCC
Q 039599 171 RTTITEQRPSSFENVKGLETLGFSEL---DNLSDNIGNFK-SFEYMGAHGSAISQL 222 (293)
Q Consensus 171 ~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~~~~~~l~-~L~~L~l~~~~~~~~ 222 (293)
+|.+. .+|..|..+++|+.|++++| +..+..+.... ....+++.+|.+.+.
T Consensus 302 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~ 356 (727)
T 4b8c_D 302 DNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP 356 (727)
T ss_dssp SSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCc
Confidence 77774 56666777777777777777 33444443322 122356666766554
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=3.6e-15 Score=116.71 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=77.0
Q ss_pred eEEeecCCcCCcccCCCCC-CccEEecccccccccCcc--ccCCCCCCEEEeccCccccccccccccccccceecccccc
Q 039599 73 VTIDFTSCINLTDFPHISG-NITRLYLDETAIEEVPSS--IKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL 149 (293)
Q Consensus 73 ~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~~--~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 149 (293)
++++++++. ++.+|..+. ++++|++++|.+..+++. +..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 11 ~~l~~s~~~-l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSC-CSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCC-cCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 456666665 455555432 666667766666666542 5666677777777766665555666666666666666666
Q ss_pred cCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC
Q 039599 150 NLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL 196 (293)
Q Consensus 150 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~ 196 (293)
+.+..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 65555555666666666666666666555555656666666666555
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=8.1e-15 Score=114.78 Aligned_cols=123 Identities=17% Similarity=0.233 Sum_probs=99.3
Q ss_pred eEEeecCCcCCcccCCCC-CCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccC
Q 039599 73 VTIDFTSCINLTDFPHIS-GNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNL 151 (293)
Q Consensus 73 ~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 151 (293)
+.++++++. ++.+|..+ .++++|++++|.+..+|..+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus 13 ~~l~~~~~~-l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSC-CSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCC-CCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 467777776 66677644 4788999999999888888888999999999998877766677888889999999998877
Q ss_pred CCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC
Q 039599 152 ERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL 196 (293)
Q Consensus 152 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~ 196 (293)
+..+..|..+++|++|++++|.++...+..|..+++|+.|++++|
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 777777888889999999999887655556777888888888776
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=9.3e-16 Score=115.02 Aligned_cols=123 Identities=15% Similarity=0.187 Sum_probs=72.1
Q ss_pred ccccceecccccccC-CCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCCccccccccCccccceeccc
Q 039599 137 LKSLIALSAYGCLNL-ERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSELDNLSDNIGNFKSFEYMGAH 215 (293)
Q Consensus 137 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~ 215 (293)
.+++++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+ ..+++|++|+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~---------------------~~l~~L~~L~Ls 72 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANL---------------------PKLNKLKKLELS 72 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTC---------------------CCCTTCCEEECC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhh---------------------hcCCCCCEEECC
Confidence 345666666666554 45555555566666666666655433 333 444555555555
Q ss_pred CCCccC-CCCcCCCCccCcccccCCccccceeecCCccCCcCC--cccCCCCCCcEEeccCCcCCCCch----hHhhccc
Q 039599 216 GSAISQ-LPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIP--QEIGYLSSLEWLHLRGNNLEGLPA----SIKQISR 288 (293)
Q Consensus 216 ~~~~~~-~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~--~~~~~~~~L~~L~l~~n~l~~~p~----~l~~l~~ 288 (293)
+|.+.+ +|. .+..+++|++|++++|.+++++ ..+..+++|+.|++++|+++++|+ .+..+++
T Consensus 73 ~n~i~~~~~~-----------~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 141 (149)
T 2je0_A 73 DNRVSGGLEV-----------LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQ 141 (149)
T ss_dssp SSCCCSCTHH-----------HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTT
T ss_pred CCcccchHHH-----------HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCC
Confidence 555555 233 1334566777777777776643 556667777777777777776554 5666677
Q ss_pred CCCCC
Q 039599 289 LESLD 293 (293)
Q Consensus 289 L~~ld 293 (293)
|+.||
T Consensus 142 L~~L~ 146 (149)
T 2je0_A 142 LTYLD 146 (149)
T ss_dssp CCEET
T ss_pred ccccc
Confidence 76654
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=3.1e-17 Score=148.90 Aligned_cols=168 Identities=17% Similarity=0.166 Sum_probs=137.3
Q ss_pred cCCCCCCEEEeccCccccccccccccccccceecccccc-------------cCCCCChhhhccccCCcee-cCCCcccc
Q 039599 111 KCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL-------------NLERFPESLEKMEHLNQIN-LGRTTITE 176 (293)
Q Consensus 111 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~n~~~~ 176 (293)
..+++|+.|++++|.+ ..+|..++.+++|+.|+++.|. ..+..|+.++.+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 5678999999999875 4689999999999999987764 3456677888899999998 55554321
Q ss_pred cCCC------cccc--cccCceecCCCC--ccccccccCccccceecccCCCccCCCCcCCCCccCcccccCCcccccee
Q 039599 177 QRPS------SFEN--VKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWL 246 (293)
Q Consensus 177 ~~~~------~~~~--~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L 246 (293)
++. .+.. ...|+.|++++| ..+|. +..+++|+.|++++|.+..+|. .++.+++|+.|
T Consensus 425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~-----------~~~~l~~L~~L 491 (567)
T 1dce_A 425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP-----------ALAALRCLEVL 491 (567)
T ss_dssp -HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG-----------GGGGCTTCCEE
T ss_pred -hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccch-----------hhhcCCCCCEE
Confidence 111 1111 236899999999 66776 8999999999999999998876 36788999999
Q ss_pred ecCCccCCcCCcccCCCCCCcEEeccCCcCCCC--chhHhhcccCCCCC
Q 039599 247 HLNNCALTSIPQEIGYLSSLEWLHLRGNNLEGL--PASIKQISRLESLD 293 (293)
Q Consensus 247 ~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l~~~--p~~l~~l~~L~~ld 293 (293)
++++|.|+++| .++.+++|+.|++++|+++++ |..+..+++|+.||
T Consensus 492 ~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 492 QASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp ECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred ECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence 99999999998 799999999999999999996 89999999998764
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=1.5e-14 Score=113.18 Aligned_cols=129 Identities=17% Similarity=0.195 Sum_probs=111.1
Q ss_pred CccEEecccccccccCccccCCCCCCEEEeccCcccccccc-ccccccccceecccccccCCCCChhhhccccCCceecC
Q 039599 92 NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVST-SICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLG 170 (293)
Q Consensus 92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 170 (293)
.-+.+++++++++++|..+.. ++++|++++|.+....+. .+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 9 ~~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 9 EGTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp ETTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 347899999999999986643 899999999987665443 47899999999999998888888899999999999999
Q ss_pred CCcccccCCCcccccccCceecCCCC---ccccccccCccccceecccCCCccCC
Q 039599 171 RTTITEQRPSSFENVKGLETLGFSEL---DNLSDNIGNFKSFEYMGAHGSAISQL 222 (293)
Q Consensus 171 ~n~~~~~~~~~~~~~~~L~~L~l~~~---~~l~~~~~~l~~L~~L~l~~~~~~~~ 222 (293)
+|.+++..+..|..+++|+.|++++| +..+..+..+++|+++++++|.+...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 99998887778889999999999998 34467788899999999999988765
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=5.1e-16 Score=144.93 Aligned_cols=184 Identities=14% Similarity=0.157 Sum_probs=111.0
Q ss_pred cCceEEeecCCcCCcccCCCCC---C-----ccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccc
Q 039599 70 VSPVTIDFTSCINLTDFPHISG---N-----ITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLI 141 (293)
Q Consensus 70 ~~L~~L~l~~~~~~~~~~~~~~---~-----L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 141 (293)
+.++.|++.++... ..+.... + +..+++..|.+...+..+..++.|+.|++++|.+. .+|..+..+++|+
T Consensus 173 ~~~~~l~L~~n~~~-~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKD-EANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCC-cchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCC
Confidence 36778888777633 3332221 2 22233334444545667889999999999998866 6777778999999
Q ss_pred eecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccceecccCCCc
Q 039599 142 ALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFEYMGAHGSAI 219 (293)
Q Consensus 142 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~~L~l~~~~~ 219 (293)
+|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++| ..+|..+..+++|++|++++|.+
T Consensus 251 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 251 RLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred EEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence 9999999776 88888999999999999999997 67889999999999999999 77888899999999999999999
Q ss_pred cCC-CCcCCCCccCcccccCCc-cccceeecCCccCCc-CCcccCCCCCCcEEeccCC
Q 039599 220 SQL-PSLSSGLVPLSASLLSGL-SLLYWLHLNNCALTS-IPQEIGYLSSLEWLHLRGN 274 (293)
Q Consensus 220 ~~~-~~l~~~l~~l~~~~~~~~-~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n 274 (293)
.+. |.. +... .....+++++|.++. +|. .|+.|++++|
T Consensus 329 ~~~~p~~-----------~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 329 EKQFLKI-----------LTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CSHHHHH-----------HHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred CCCChHH-----------HhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 876 431 1111 112347788888876 554 4556667666
No 127
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=3.4e-17 Score=128.96 Aligned_cols=84 Identities=24% Similarity=0.215 Sum_probs=39.7
Q ss_pred ccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC--ccccccccCccccc
Q 039599 133 SICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDNIGNFKSFE 210 (293)
Q Consensus 133 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~l~~L~ 210 (293)
.+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|+.|++++| ..++ .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence 44555555555555554433 33 4555555555555555553 33444444445555555444 2222 233444444
Q ss_pred eecccCCCcc
Q 039599 211 YMGAHGSAIS 220 (293)
Q Consensus 211 ~L~l~~~~~~ 220 (293)
+|++++|.+.
T Consensus 119 ~L~l~~N~i~ 128 (198)
T 1ds9_A 119 VLYMSNNKIT 128 (198)
T ss_dssp EEEESEEECC
T ss_pred EEECCCCcCC
Confidence 4444444443
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=7.4e-15 Score=110.05 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=58.5
Q ss_pred CceEEeecCCcCC-cccCCC---CCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceeccc
Q 039599 71 SPVTIDFTSCINL-TDFPHI---SGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAY 146 (293)
Q Consensus 71 ~L~~L~l~~~~~~-~~~~~~---~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 146 (293)
+++.|++++|.+. +.+|.. +.+|++|++++|.+..+ ..+..+++|++|++++|.+....|..+..+++|++|+++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 5556666665533 244432 23455555555555444 444555555555555555444344444445555555555
Q ss_pred ccccCCC-CChhhhccccCCceecCCCcccccCC---CcccccccCceecC
Q 039599 147 GCLNLER-FPESLEKMEHLNQINLGRTTITEQRP---SSFENVKGLETLGF 193 (293)
Q Consensus 147 ~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l 193 (293)
+|.+.+. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 5543331 12344555555555555555543322 23444455555444
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=1.9e-14 Score=110.98 Aligned_cols=133 Identities=14% Similarity=0.137 Sum_probs=101.7
Q ss_pred ccccccccceecccccccCCCCChhhhccc-cCCceecCCCcccccCCCcccccccCceecCCCC--cccccc-ccCccc
Q 039599 133 SICKLKSLIALSAYGCLNLERFPESLEKME-HLNQINLGRTTITEQRPSSFENVKGLETLGFSEL--DNLSDN-IGNFKS 208 (293)
Q Consensus 133 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~-~~~l~~ 208 (293)
.+..+.+|++|++++|.+. .++. +..+. +|++|++++|.+++. ..+..+++|++|++++| ..++.. +..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3557788999999998766 4454 44444 899999999999764 56788889999999988 455544 477888
Q ss_pred cceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcc----cCCCCCCcEEeccCCcCCC
Q 039599 209 FEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQE----IGYLSSLEWLHLRGNNLEG 278 (293)
Q Consensus 209 L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~----~~~~~~L~~L~l~~n~l~~ 278 (293)
|++|++++|.+..+|.+. .+..+++|++|++++|.++.+|.. +..+++|+.||+++|....
T Consensus 90 L~~L~L~~N~i~~~~~~~---------~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLD---------PLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCEEECCSCCCCCGGGGG---------GGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCEEECCCCcCCcchhhH---------hhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999998887765311 256778888999999988887764 7788889999988887653
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=2.2e-13 Score=105.04 Aligned_cols=123 Identities=19% Similarity=0.195 Sum_probs=67.9
Q ss_pred eEEeecCCcCCcccCCC-CCCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceeccccccc
Q 039599 73 VTIDFTSCINLTDFPHI-SGNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLN 150 (293)
Q Consensus 73 ~~L~l~~~~~~~~~~~~-~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 150 (293)
+.++++++. ++.+|.. ..++++|++++|.+..++. .+..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 10 ~~l~~~~~~-l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 10 TEIRCNSKG-LTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TEEECCSSC-CSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCC-CccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 345555554 3444432 2356666666666665554 345666666666666655443334455666666666666655
Q ss_pred CCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC
Q 039599 151 LERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL 196 (293)
Q Consensus 151 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~ 196 (293)
.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 5444444556666666666666665433333445555555555554
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.50 E-value=1.7e-13 Score=107.22 Aligned_cols=127 Identities=13% Similarity=0.159 Sum_probs=102.9
Q ss_pred ccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCC
Q 039599 93 ITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRT 172 (293)
Q Consensus 93 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 172 (293)
-+.++++++++.++|..+. +++++|++++|.+. .+|..+..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 3678999999999997653 68999999998765 56778889999999999999887777778899999999999999
Q ss_pred cccccCCCcccccccCceecCCCC--ccccc-cccCccccceecccCCCccCC
Q 039599 173 TITEQRPSSFENVKGLETLGFSEL--DNLSD-NIGNFKSFEYMGAHGSAISQL 222 (293)
Q Consensus 173 ~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~-~~~~l~~L~~L~l~~~~~~~~ 222 (293)
.+++..+..|..+++|+.|++++| ..++. .+..+++|+.+++++|.+...
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 998777777888888888888888 44444 466777888888887776543
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.48 E-value=3.9e-13 Score=103.63 Aligned_cols=128 Identities=15% Similarity=0.166 Sum_probs=87.5
Q ss_pred CccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCC
Q 039599 92 NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR 171 (293)
Q Consensus 92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 171 (293)
..+.++++++++..+|..+ .++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4577888888888888654 36889999998887654455567788888888888877655556677888888888888
Q ss_pred CcccccCCCcccccccCceecCCCC--cccccc-ccCccccceecccCCCccC
Q 039599 172 TTITEQRPSSFENVKGLETLGFSEL--DNLSDN-IGNFKSFEYMGAHGSAISQ 221 (293)
Q Consensus 172 n~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~-~~~l~~L~~L~l~~~~~~~ 221 (293)
|.+++..+..+..+++|+.|++++| ..++.. +..+++|+++++++|.+..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 8886555555666666776666665 333322 3445555555555555443
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1.7e-13 Score=105.62 Aligned_cols=125 Identities=14% Similarity=0.159 Sum_probs=76.9
Q ss_pred CCcCceEEeecCCcCCcccCCC---CCCccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceec
Q 039599 68 HFVSPVTIDFTSCINLTDFPHI---SGNITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALS 144 (293)
Q Consensus 68 ~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 144 (293)
.+.+|+.|++++|.+ +.+|.. ..+|++|++++|.+..+ +.+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 17 ~~~~L~~L~l~~n~l-~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 17 NAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp CTTSCEEEECTTSCC-CSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CcCCceEEEeeCCCC-chhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 344777777777763 344432 12677777777777666 4566677777777777765543223336677777777
Q ss_pred ccccccCCCCCh--hhhccccCCceecCCCcccccCCCc----ccccccCceecCCCC
Q 039599 145 AYGCLNLERFPE--SLEKMEHLNQINLGRTTITEQRPSS----FENVKGLETLGFSEL 196 (293)
Q Consensus 145 l~~~~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~~~L~~L~l~~~ 196 (293)
+++|.+ +.+|. .+..+++|++|++++|.++ ..+.. +..+++|+.|+++++
T Consensus 95 L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 95 LTNNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcC
Confidence 777655 33443 5666677777777777764 33432 555666666666655
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.43 E-value=5.4e-13 Score=113.20 Aligned_cols=96 Identities=15% Similarity=0.157 Sum_probs=58.6
Q ss_pred cccCceecCCCC--ccccc-cccCccccceecccCCCccCCCCcCCCCccCcccccCCccccc-eeecCCccCCcCC-cc
Q 039599 185 VKGLETLGFSEL--DNLSD-NIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLY-WLHLNNCALTSIP-QE 259 (293)
Q Consensus 185 ~~~L~~L~l~~~--~~l~~-~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~-~L~l~~n~i~~l~-~~ 259 (293)
+++|+.+++.+| ..++. .+..+++|+.+++.++ +..++. ..|.++.+|+ .+++.+ .++.++ .+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~----------~aF~~~~~L~~~l~l~~-~l~~I~~~a 292 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ----------RVFSNCGRLAGTLELPA-SVTAIEFGA 292 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT----------TTTTTCTTCCEEEEECT-TCCEECTTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH----------HHhhCChhccEEEEEcc-cceEEchhh
Confidence 556666666664 33332 4555666666666655 444422 1256777777 777776 566643 45
Q ss_pred cCCCCCCcEEeccCCcCCCCc-hhHhhcccCCCC
Q 039599 260 IGYLSSLEWLHLRGNNLEGLP-ASIKQISRLESL 292 (293)
Q Consensus 260 ~~~~~~L~~L~l~~n~l~~~p-~~l~~l~~L~~l 292 (293)
|.+|++|+.++++.|.++.++ ..|..+++|+.+
T Consensus 293 F~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 293 FMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp TTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred hhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 677777777777777777644 356667777654
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.41 E-value=5.1e-13 Score=113.36 Aligned_cols=230 Identities=12% Similarity=0.113 Sum_probs=155.1
Q ss_pred CccccEEEEeccceeee----c--ccceEEEeccCCccc--ccCCCCCCCcCceEEeecCCcCCcccCCC--------CC
Q 039599 28 MSNLRVLKFYIPEISVH----M--SIEEQLLDSKGCKIL--RSFPSNLHFVSPVTIDFTSCINLTDFPHI--------SG 91 (293)
Q Consensus 28 ~~~L~~L~l~~~~~~~~----~--~~~l~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------~~ 91 (293)
+.+++.|.++++-...+ . .-.|+.|++++|.+. ......+ +.+..+.+..+.+....-.. +.
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~--~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY--PNGKFYIYMANFVPAYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS--GGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccc--cccccccccccccCHHHhcccccccccccC
Confidence 45788888887421111 1 123888888888765 2111111 12334444444322211123 56
Q ss_pred CccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceeccccccc-----------------CC-
Q 039599 92 NITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLN-----------------LE- 152 (293)
Q Consensus 92 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-----------------~~- 152 (293)
+|+++++.+ .+..+++ +|.+|++|+.+++++|.+....+..+..+.++..+....... ..
T Consensus 102 ~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~ 180 (329)
T 3sb4_A 102 TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET 180 (329)
T ss_dssp TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence 889999988 8888876 789999999999999877665566677777777776554211 00
Q ss_pred --------CCCh---------------------------hh-hccccCCceecCCCcccccCCCcccccccCceecCCCC
Q 039599 153 --------RFPE---------------------------SL-EKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL 196 (293)
Q Consensus 153 --------~~~~---------------------------~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~ 196 (293)
.++. .+ ..+++|+++++.+|.++......|..+++|+.+++..+
T Consensus 181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN 260 (329)
T ss_dssp EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT
T ss_pred eEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc
Confidence 0000 00 13789999999999997777778999999999999988
Q ss_pred -ccc-cccccCccccc-eecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCc-ccCCCCCCcEEec
Q 039599 197 -DNL-SDNIGNFKSFE-YMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQ-EIGYLSSLEWLHL 271 (293)
Q Consensus 197 -~~l-~~~~~~l~~L~-~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l 271 (293)
..+ ...|..+++|+ .+.+.. .+..++. ..|.+|++|+.+++++|.++.++. +|.++++|+.+..
T Consensus 261 i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~----------~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 261 LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF----------GAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEECTTTTTTCTTCCEEEEECT-TCCEECT----------TTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cceehHHHhhCChhccEEEEEcc-cceEEch----------hhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 444 34677899999 999887 5555532 147899999999999999998664 7889999998863
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=1.3e-15 Score=119.92 Aligned_cols=88 Identities=19% Similarity=0.196 Sum_probs=49.0
Q ss_pred cccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCccc
Q 039599 104 EEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFE 183 (293)
Q Consensus 104 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 183 (293)
..+|..+..+++|++|++++|.+.. +| .+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++ ++ .+.
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~ 112 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIE 112 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHH
T ss_pred hhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccc
Confidence 3444455566666666666655443 34 4555666666666665443 445555555666666666666543 22 355
Q ss_pred ccccCceecCCCC
Q 039599 184 NVKGLETLGFSEL 196 (293)
Q Consensus 184 ~~~~L~~L~l~~~ 196 (293)
.+++|+.|++++|
T Consensus 113 ~l~~L~~L~l~~N 125 (198)
T 1ds9_A 113 KLVNLRVLYMSNN 125 (198)
T ss_dssp HHHHSSEEEESEE
T ss_pred cCCCCCEEECCCC
Confidence 5566666666655
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=4e-12 Score=97.26 Aligned_cols=103 Identities=19% Similarity=0.153 Sum_probs=60.9
Q ss_pred ceEEeecCCcCCcccCCCC-CCccEEecccccccccC-ccccCCCCCCEEEeccCccccccccccccccccceecccccc
Q 039599 72 PVTIDFTSCINLTDFPHIS-GNITRLYLDETAIEEVP-SSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL 149 (293)
Q Consensus 72 L~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 149 (293)
.+.++++++. ++.+|..+ .++++|++++|.+..++ ..|.++++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 11 ~~~l~~s~n~-l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCC-cCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 4566666665 44555433 35666666666666553 345666666666666666554334445566666666666665
Q ss_pred cCCCCChhhhccccCCceecCCCccc
Q 039599 150 NLERFPESLEKMEHLNQINLGRTTIT 175 (293)
Q Consensus 150 ~~~~~~~~~~~l~~L~~L~l~~n~~~ 175 (293)
+.+..+..+..+++|++|++++|.+.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 55444445666666666666666654
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=8.4e-12 Score=95.48 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=86.2
Q ss_pred CccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCC
Q 039599 92 NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR 171 (293)
Q Consensus 92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 171 (293)
..+.++++++++..+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 45788999999988887663 7889999999888777677788899999999999977766666678899999999999
Q ss_pred CcccccCCCcccccccCceecCCCC
Q 039599 172 TTITEQRPSSFENVKGLETLGFSEL 196 (293)
Q Consensus 172 n~~~~~~~~~~~~~~~L~~L~l~~~ 196 (293)
|.+++..+..|..+++|+.|++++|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCC
Confidence 9997666666888899999999988
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=7.6e-12 Score=96.07 Aligned_cols=101 Identities=18% Similarity=0.172 Sum_probs=57.5
Q ss_pred eEEeecCCcCCcccCCCC-CCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceeccccccc
Q 039599 73 VTIDFTSCINLTDFPHIS-GNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLN 150 (293)
Q Consensus 73 ~~L~l~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 150 (293)
+.++++++. ++.+|..+ .++++|++++|.+..+++ .|.++++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 15 ~~l~~~~n~-l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCC-CCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 456666665 45555433 356666666666665533 556666666666666655443333345566666666666655
Q ss_pred CCCCChhhhccccCCceecCCCcc
Q 039599 151 LERFPESLEKMEHLNQINLGRTTI 174 (293)
Q Consensus 151 ~~~~~~~~~~l~~L~~L~l~~n~~ 174 (293)
.+..+..+..+++|++|++++|.+
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ceeCHHHhccccCCCEEEeCCCCc
Confidence 443333455666666666666655
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.28 E-value=2e-11 Score=93.68 Aligned_cols=103 Identities=18% Similarity=0.186 Sum_probs=83.5
Q ss_pred CccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCC
Q 039599 92 NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR 171 (293)
Q Consensus 92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 171 (293)
.-+.+++++++++.+|..+. ++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 13 ~~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 13 DQTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp CSSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 34678888898888887664 7889999999887776677788889999999999877665555678889999999999
Q ss_pred CcccccCCCcccccccCceecCCCC
Q 039599 172 TTITEQRPSSFENVKGLETLGFSEL 196 (293)
Q Consensus 172 n~~~~~~~~~~~~~~~L~~L~l~~~ 196 (293)
|.+.+..+..|..+++|+.|++++|
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CccceeCHHHhccccCCCEEEeCCC
Confidence 9887555555888889999999888
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.28 E-value=2.1e-10 Score=99.63 Aligned_cols=140 Identities=14% Similarity=0.139 Sum_probs=57.5
Q ss_pred cCceEEeecCCcCCcccCCCC---CCccEEecccccccccCc-cccCCCCCCEEEeccCccccccccccccccccceecc
Q 039599 70 VSPVTIDFTSCINLTDFPHIS---GNITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSA 145 (293)
Q Consensus 70 ~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 145 (293)
.+|+.+++.++. ++.++... .+|+++.+..+ +..++. +|.++++|+.+.+..+ +...-...+.+ .+|+.+.+
T Consensus 180 ~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 180 YNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp TTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE
T ss_pred ccCCeeecCCCc-ceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe
Confidence 355555555444 33333221 24444444422 333333 4445555555555442 11111222322 44555554
Q ss_pred cccccCCCCChhhhccccCCceecCCCccc-----ccCCCcccccccCceecCCCC-ccc-cccccCccccceecc
Q 039599 146 YGCLNLERFPESLEKMEHLNQINLGRTTIT-----EQRPSSFENVKGLETLGFSEL-DNL-SDNIGNFKSFEYMGA 214 (293)
Q Consensus 146 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~~L~l~~~-~~l-~~~~~~l~~L~~L~l 214 (293)
..+ ....-...|..+++|+.+.+.++.+. ......|..+++|+.+.+..+ ..+ ...+..+++|+.+.+
T Consensus 256 p~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 256 PNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp ETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEE
T ss_pred CCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEE
Confidence 321 22222334555555555555544332 122334445555555555433 222 223344445555544
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=2.6e-13 Score=116.94 Aligned_cols=157 Identities=11% Similarity=0.085 Sum_probs=82.3
Q ss_pred CCccEEecccccccccC-----cccc-CCCCCCEEEeccCcccccccccc-ccccccceecccccccCCCCChhh-----
Q 039599 91 GNITRLYLDETAIEEVP-----SSIK-CLTNLKLLRINRCTRLKRVSTSI-CKLKSLIALSAYGCLNLERFPESL----- 158 (293)
Q Consensus 91 ~~L~~L~l~~~~~~~l~-----~~~~-~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~----- 158 (293)
..+++|++++|.++... ..+. ..++|++|++++|.+.......+ ..+++|++|++++|.+.......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45777777777765321 1222 22567777777776544322222 235567777777775543222222
Q ss_pred hccccCCceecCCCcccccC----CCcccccccCceecCCCC-------ccccccccCccccceecccCCCccCCC--Cc
Q 039599 159 EKMEHLNQINLGRTTITEQR----PSSFENVKGLETLGFSEL-------DNLSDNIGNFKSFEYMGAHGSAISQLP--SL 225 (293)
Q Consensus 159 ~~l~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~~-------~~l~~~~~~l~~L~~L~l~~~~~~~~~--~l 225 (293)
...++|++|++++|.+++.. +..+...++|++|++++| ..+...+...++|++|++++|.++... .+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 13456777777777664322 222344566667776666 122344455556666666666655431 01
Q ss_pred CCCCccCcccccCCccccceeecCCccCCc
Q 039599 226 SSGLVPLSASLLSGLSLLYWLHLNNCALTS 255 (293)
Q Consensus 226 ~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~ 255 (293)
.. .+...++|++|++++|.|++
T Consensus 232 ~~--------~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 AR--------AAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HH--------HHHHCSSCCEEECTTSSCCH
T ss_pred HH--------HHHhCCCCCEEeccCCCCCH
Confidence 00 12233556666666666654
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.16 E-value=1.2e-09 Score=95.01 Aligned_cols=171 Identities=13% Similarity=0.124 Sum_probs=93.8
Q ss_pred CccEEecccccccccCccccCCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCC
Q 039599 92 NITRLYLDETAIEEVPSSIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR 171 (293)
Q Consensus 92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 171 (293)
+|+.+++.+|.+..++.....+.+|+.+.+..+ +.......+.++++|+.+.+..+ +...-..+|.. .+|+.+.+.
T Consensus 181 ~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp- 256 (401)
T 4fdw_A 181 NLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP- 256 (401)
T ss_dssp TCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-
T ss_pred cCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-
Confidence 455555655555555542222455566655532 22222344555556666666543 22111233433 456666663
Q ss_pred CcccccCCCcccccccCceecCCCC--c-----cc-cccccCccccceecccCCCccCCCCcCCCCccCcccccCCcccc
Q 039599 172 TTITEQRPSSFENVKGLETLGFSEL--D-----NL-SDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLL 243 (293)
Q Consensus 172 n~~~~~~~~~~~~~~~L~~L~l~~~--~-----~l-~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L 243 (293)
+.++......|..+++|+.+.+.++ . .+ ...+..+++|+.+.+.. .+..++ -..|.+|.+|
T Consensus 257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~----------~~aF~~c~~L 325 (401)
T 4fdw_A 257 NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG----------QGLLGGNRKV 325 (401)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC----------TTTTTTCCSC
T ss_pred CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh----------hhhhcCCCCc
Confidence 3343444455666666666666554 1 12 23455666666666652 233332 2247788888
Q ss_pred ceeecCCccCCcCC-cccCCCCCCcEEeccCCcCCCC
Q 039599 244 YWLHLNNCALTSIP-QEIGYLSSLEWLHLRGNNLEGL 279 (293)
Q Consensus 244 ~~L~l~~n~i~~l~-~~~~~~~~L~~L~l~~n~l~~~ 279 (293)
+.+.+..+ ++.+. .+|..+ +|+.+++++|.+..+
T Consensus 326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccc
Confidence 88888654 66643 467778 899999988877653
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.08 E-value=1.1e-11 Score=106.81 Aligned_cols=132 Identities=10% Similarity=0.082 Sum_probs=66.9
Q ss_pred CCccEEeccccccccc--CccccCCCCCCEEEeccCccccccccccc-----cccccceecccccccCC----CCChhhh
Q 039599 91 GNITRLYLDETAIEEV--PSSIKCLTNLKLLRINRCTRLKRVSTSIC-----KLKSLIALSAYGCLNLE----RFPESLE 159 (293)
Q Consensus 91 ~~L~~L~l~~~~~~~l--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~----~~~~~~~ 159 (293)
.+|++|++++|.++.. ......+++|++|++++|.+.......++ ..++|++|++++|.+.. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 3555555555555311 11112334556666666654433222221 23556666666664432 2333345
Q ss_pred ccccCCceecCCCcccccC----CCcccccccCceecCCCC-------ccccccccCccccceecccCCCccCC
Q 039599 160 KMEHLNQINLGRTTITEQR----PSSFENVKGLETLGFSEL-------DNLSDNIGNFKSFEYMGAHGSAISQL 222 (293)
Q Consensus 160 ~l~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~~-------~~l~~~~~~l~~L~~L~l~~~~~~~~ 222 (293)
.+++|++|++++|.+.+.. +..+...++|+.|++++| ..+...+...+.|++|++++|.++..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 5566666666666654322 233444556666666666 12333444556677777777766543
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.06 E-value=4e-10 Score=96.07 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=68.4
Q ss_pred EEeecCCcCCcccCCCCC---CccEEeccc-ccccccCc-cccCCCCCCEEEeccCccccccccccccccccceeccccc
Q 039599 74 TIDFTSCINLTDFPHISG---NITRLYLDE-TAIEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGC 148 (293)
Q Consensus 74 ~L~l~~~~~~~~~~~~~~---~L~~L~l~~-~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 148 (293)
.++.+++..++.+|. +. +|++|+|++ |.+..+++ .|.++++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 346666522556766 43 477778875 77777764 5777888888888887776666666777788888888887
Q ss_pred ccCCCCChhhhccccCCceecCCCccc
Q 039599 149 LNLERFPESLEKMEHLNQINLGRTTIT 175 (293)
Q Consensus 149 ~~~~~~~~~~~~l~~L~~L~l~~n~~~ 175 (293)
.+.+..+..+..++ |++|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 66654444455454 788888877774
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.86 E-value=5.1e-09 Score=89.18 Aligned_cols=101 Identities=16% Similarity=0.109 Sum_probs=86.7
Q ss_pred cEEecccc-cccccCccccCCCCCCEEEecc-CccccccccccccccccceecccccccCCCCChhhhccccCCceecCC
Q 039599 94 TRLYLDET-AIEEVPSSIKCLTNLKLLRINR-CTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGR 171 (293)
Q Consensus 94 ~~L~l~~~-~~~~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 171 (293)
..++.+++ ++..+|. +..+++|++|++++ |.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 45788888 8999999 99999999999996 877766667899999999999999988888888899999999999999
Q ss_pred CcccccCCCcccccccCceecCCCC
Q 039599 172 TTITEQRPSSFENVKGLETLGFSEL 196 (293)
Q Consensus 172 n~~~~~~~~~~~~~~~L~~L~l~~~ 196 (293)
|.+++..+..|..++ |+.|++.+|
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSS
T ss_pred CccceeCHHHcccCC-ceEEEeeCC
Confidence 999765555555555 999999988
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.73 E-value=5.8e-07 Score=77.85 Aligned_cols=41 Identities=7% Similarity=0.255 Sum_probs=25.6
Q ss_pred cceeechhhccCCccccEEEEecccee-e-eccc----ceEEEeccCC
Q 039599 16 KGINLNLRAFSNMSNLRVLKFYIPEIS-V-HMSI----EEQLLDSKGC 57 (293)
Q Consensus 16 ~~~~~~~~~~~~~~~L~~L~l~~~~~~-~-~~~~----~l~~L~l~~~ 57 (293)
....++..+|..+++|+.+.+..+ +. . ..++ .|+.+++.++
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~ 104 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS 104 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC
Confidence 456677788888888888888543 22 1 1111 1777777543
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.71 E-value=1.9e-09 Score=92.21 Aligned_cols=38 Identities=18% Similarity=0.342 Sum_probs=20.2
Q ss_pred ccccceeecCCccCCc-----CCcccCCCCCCcEEeccCCcCC
Q 039599 240 LSLLYWLHLNNCALTS-----IPQEIGYLSSLEWLHLRGNNLE 277 (293)
Q Consensus 240 ~~~L~~L~l~~n~i~~-----l~~~~~~~~~L~~L~l~~n~l~ 277 (293)
+++|++|+++.|.+++ ++..+..+++|+.|++++|.++
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 4556666666665554 2222234556666666666555
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.61 E-value=1.5e-08 Score=86.64 Aligned_cols=81 Identities=12% Similarity=0.204 Sum_probs=42.5
Q ss_pred cccCceecCCCCc---ccccc---ccCccccceecccCCCccCC-CC-cCCCCccCcccccCCccccceeecCCccCCc-
Q 039599 185 VKGLETLGFSELD---NLSDN---IGNFKSFEYMGAHGSAISQL-PS-LSSGLVPLSASLLSGLSLLYWLHLNNCALTS- 255 (293)
Q Consensus 185 ~~~L~~L~l~~~~---~l~~~---~~~l~~L~~L~l~~~~~~~~-~~-l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~- 255 (293)
+++|+.|.+..|+ ..... ...++.|++|+++.|.+.+. +. +.. .+..+++|++|++++|.|++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~--------~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD--------HVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHT--------THHHHTTCSEEECCSBBCCHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHh--------hcccCCcceEEECCCCcCCHH
Confidence 4566666665551 11111 12466777777777766553 11 110 12345778888888887775
Q ss_pred CCcccCC-CCCCcEEeccCCc
Q 039599 256 IPQEIGY-LSSLEWLHLRGNN 275 (293)
Q Consensus 256 l~~~~~~-~~~L~~L~l~~n~ 275 (293)
.-..+.. + ...++++.++
T Consensus 323 ~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 323 MKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHc--CCEEEecCCc
Confidence 2122221 2 3456777665
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.58 E-value=1.5e-06 Score=75.30 Aligned_cols=162 Identities=12% Similarity=0.095 Sum_probs=89.2
Q ss_pred CCCCCCEEEeccCccccccccccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCcee
Q 039599 112 CLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETL 191 (293)
Q Consensus 112 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 191 (293)
....|+.+.+... ........+..+..++.+.+..+ ........+..+..++........+. ...|..+.+|+.+
T Consensus 228 ~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i 302 (394)
T 4fs7_A 228 SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEV 302 (394)
T ss_dssp TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEE
T ss_pred ccCCCceEEECCC-ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCceeec---ccccccccccccc
Confidence 3456666666542 12212233455666666666554 22222344556666666665544331 2345566677777
Q ss_pred cCCCC-ccc-cccccCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCC-cccCCCCCCcE
Q 039599 192 GFSEL-DNL-SDNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIP-QEIGYLSSLEW 268 (293)
Q Consensus 192 ~l~~~-~~l-~~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~~~~L~~ 268 (293)
.+..+ ..+ ...+..+.+|+.+++..+ +..++. ..|.+|.+|+.+.+..+ ++.+. .+|.+|++|+.
T Consensus 303 ~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~----------~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 370 (394)
T 4fs7_A 303 KLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGK----------RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKK 370 (394)
T ss_dssp EECTTCCEECTTTTTTCTTCCEECCCTT-CCEECT----------TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred ccccccceechhhhcCCCCCCEEEeCCc-ccEEhH----------HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence 66655 333 234556677777766432 333311 13667778888887655 55543 45777888888
Q ss_pred EeccCCcCCCCchhHhhcccCCC
Q 039599 269 LHLRGNNLEGLPASIKQISRLES 291 (293)
Q Consensus 269 L~l~~n~l~~~p~~l~~l~~L~~ 291 (293)
+++..+ ++.+...+..+.+|+.
T Consensus 371 i~lp~~-~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 371 VELPKR-LEQYRYDFEDTTKFKW 392 (394)
T ss_dssp EEEEGG-GGGGGGGBCTTCEEEE
T ss_pred EEECCC-CEEhhheecCCCCCcE
Confidence 887643 3334445666666654
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.49 E-value=1.7e-05 Score=68.63 Aligned_cols=106 Identities=16% Similarity=0.296 Sum_probs=63.4
Q ss_pred hhhccccCCceecCCCcccccCCCcccccccCceecCCCC-cccc-ccccCccccceecccCCCccCCCCcCCCCccCcc
Q 039599 157 SLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL-DNLS-DNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSA 234 (293)
Q Consensus 157 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~l~-~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~ 234 (293)
.|..++.|+.+.+..+.. ......|..+.+|+.+.+... ..++ ..+..+.+|+.+.+..+ ++.+ .-
T Consensus 260 aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I----------~~ 327 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQI----------LD 327 (394)
T ss_dssp TTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEE----------CT
T ss_pred eeeecccccEEecccccc-eecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEe----------hH
Confidence 455566666666654332 333445666667777766554 3332 24555667777666432 2222 11
Q ss_pred cccCCccccceeecCCccCCcCC-cccCCCCCCcEEeccCCc
Q 039599 235 SLLSGLSLLYWLHLNNCALTSIP-QEIGYLSSLEWLHLRGNN 275 (293)
Q Consensus 235 ~~~~~~~~L~~L~l~~n~i~~l~-~~~~~~~~L~~L~l~~n~ 275 (293)
..|.+|.+|+++.+..+ ++.+. .+|.+|++|+.+++.++.
T Consensus 328 ~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred hHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 24778888888888654 66654 467888888888887764
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.43 E-value=9.6e-06 Score=70.14 Aligned_cols=129 Identities=16% Similarity=0.195 Sum_probs=82.0
Q ss_pred ccccccccceecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC-ccc-cccccCccccc
Q 039599 133 SICKLKSLIALSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL-DNL-SDNIGNFKSFE 210 (293)
Q Consensus 133 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~l-~~~~~~l~~L~ 210 (293)
.+..+..|+.+.+... ....-...|..++.|+.+.+.. .++......|..+.+|+.+.+..+ ..+ ...+..+.+|+
T Consensus 260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCC
T ss_pred eeeecccccEEecccc-cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCC
Confidence 3445667777776543 2222235678889999999964 454555567889999999999877 444 34677889999
Q ss_pred eecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCcccCCCCCCcEEeccCCcC
Q 039599 211 YMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQEIGYLSSLEWLHLRGNNL 276 (293)
Q Consensus 211 ~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~l 276 (293)
.+.+..+ +..+.. ..|.+|.+|+.+++.++... . ..+..+.+|+.+.+..+.+
T Consensus 338 ~i~ip~s-v~~I~~----------~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 338 RIAIPSS-VTKIPE----------SAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EEEECTT-CCBCCG----------GGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC----------
T ss_pred EEEECcc-cCEEhH----------hHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEeCCCCE
Confidence 9988543 444422 24889999999999987432 1 3466788888888766543
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.41 E-value=4.9e-08 Score=75.40 Aligned_cols=66 Identities=14% Similarity=0.125 Sum_probs=29.0
Q ss_pred ccCCCCCCEEEeccC-ccccc----cccccccccccceecccccccCC----CCChhhhccccCCceecCCCccc
Q 039599 110 IKCLTNLKLLRINRC-TRLKR----VSTSICKLKSLIALSAYGCLNLE----RFPESLEKMEHLNQINLGRTTIT 175 (293)
Q Consensus 110 ~~~l~~L~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~~~ 175 (293)
+...++|++|++++| .+... +...+...++|++|++++|.+.. .+.+.+...+.|++|++++|.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 344455555555554 33321 11223334455555555554332 12233334445555555555553
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.39 E-value=0.00011 Score=63.12 Aligned_cols=105 Identities=17% Similarity=0.186 Sum_probs=57.7
Q ss_pred hhhccccCCceecCCCcccccCCCcccccccCceecCCCC-cccc-ccccCccccceecccCCCccCCCCcCCCCccCcc
Q 039599 157 SLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL-DNLS-DNIGNFKSFEYMGAHGSAISQLPSLSSGLVPLSA 234 (293)
Q Consensus 157 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~l~-~~~~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~ 234 (293)
.+..+..|+.+.+..+ ++......|..+.+|+.+.+... ..++ ..+..+.+|+.+.+.++.+..++.
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~---------- 303 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEP---------- 303 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECT----------
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhccccccccceeccccccccccccccccccccccceehh----------
Confidence 3455555666665443 33333345556666666666544 2222 244556666666666555544422
Q ss_pred cccCCccccceeecCCccCCcCC-cccCCCCCCcEEeccC
Q 039599 235 SLLSGLSLLYWLHLNNCALTSIP-QEIGYLSSLEWLHLRG 273 (293)
Q Consensus 235 ~~~~~~~~L~~L~l~~n~i~~l~-~~~~~~~~L~~L~l~~ 273 (293)
..|.+|.+|+.+.+..+ ++.+. .+|.+|++|+.+.+..
T Consensus 304 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 304 RVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred hhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 13566777777777543 55543 3566677777776643
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.33 E-value=1.3e-07 Score=72.95 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=43.0
Q ss_pred cccCCCCCCEEEeccCcccccc----ccccccccccceecccccccCCC----CChhhhccccCCceec--CCCcccccC
Q 039599 109 SIKCLTNLKLLRINRCTRLKRV----STSICKLKSLIALSAYGCLNLER----FPESLEKMEHLNQINL--GRTTITEQR 178 (293)
Q Consensus 109 ~~~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l--~~n~~~~~~ 178 (293)
.+...++|++|++++|.+.... ...+...+.|++|++++|.+... +.+.+...+.|++|++ ++|.+.+..
T Consensus 60 ~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g 139 (185)
T 1io0_A 60 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV 139 (185)
T ss_dssp HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHH
Confidence 3444555666666665543321 22233445566666666654421 3344455556666666 556554322
Q ss_pred C----CcccccccCceecCCCC
Q 039599 179 P----SSFENVKGLETLGFSEL 196 (293)
Q Consensus 179 ~----~~~~~~~~L~~L~l~~~ 196 (293)
. ..+...++|+.|++++|
T Consensus 140 ~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 140 EMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHhCCCcCEEeccCC
Confidence 1 22233345555555554
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.19 E-value=5.9e-07 Score=73.12 Aligned_cols=81 Identities=27% Similarity=0.300 Sum_probs=55.5
Q ss_pred cCccccceecccCCCccCCCCcCCCCccCcccccCCccccceeecCCccCCcCCc--ccCCCCCCcEEeccCCcCCC-Cc
Q 039599 204 GNFKSFEYMGAHGSAISQLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIPQ--EIGYLSSLEWLHLRGNNLEG-LP 280 (293)
Q Consensus 204 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~~--~~~~~~~L~~L~l~~n~l~~-~p 280 (293)
..++.|+.|++++|.+.+++.+.. .+..+++|+.|+|++|.|+++.. .+..+ +|+.|++++|.+.+ +|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~--------~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSS--------IVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTT--------HHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchh--------HHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccC
Confidence 356788888888888877632110 13467888888998888887522 23333 88899999998875 44
Q ss_pred -------hhHhhcccCCCCC
Q 039599 281 -------ASIKQISRLESLD 293 (293)
Q Consensus 281 -------~~l~~l~~L~~ld 293 (293)
..+..+|+|+.||
T Consensus 238 ~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 238 DQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp SHHHHHHHHHHHCTTCCEES
T ss_pred cchhHHHHHHHHCcccCeEC
Confidence 2366788888776
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.19 E-value=3.8e-07 Score=69.12 Aligned_cols=81 Identities=16% Similarity=0.291 Sum_probs=36.9
Q ss_pred CccEEeccccccc-ccCccccCCCCCCEEEeccCcccc-ccccccccc----cccceecccccccC-CCCChhhhccccC
Q 039599 92 NITRLYLDETAIE-EVPSSIKCLTNLKLLRINRCTRLK-RVSTSICKL----KSLIALSAYGCLNL-ERFPESLEKMEHL 164 (293)
Q Consensus 92 ~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l----~~L~~L~l~~~~~~-~~~~~~~~~l~~L 164 (293)
.|++|+++++.++ .--..+.++++|++|++++|...+ ..-..++.+ ++|++|++++|... ..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 5666666666553 222334556666666666654222 212223332 24555555555322 1111223444455
Q ss_pred CceecCCC
Q 039599 165 NQINLGRT 172 (293)
Q Consensus 165 ~~L~l~~n 172 (293)
++|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555544
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.04 E-value=5.2e-06 Score=67.53 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=38.1
Q ss_pred cCCCCCCEEEeccCcccc--ccccccccccccceecccccccCCCCChhhhccc--cCCceecCCCcccccCC
Q 039599 111 KCLTNLKLLRINRCTRLK--RVSTSICKLKSLIALSAYGCLNLERFPESLEKME--HLNQINLGRTTITEQRP 179 (293)
Q Consensus 111 ~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~ 179 (293)
..+++|+.|++++|.+.+ .++..+..+++|+.|++++|.+.+. ..+..++ +|++|++++|.+++..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 345667777777666554 3334445666666666666655432 2233333 66666776666655443
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.99 E-value=0.001 Score=56.98 Aligned_cols=267 Identities=12% Similarity=0.123 Sum_probs=126.8
Q ss_pred ceEEEEeecCcccceeechhhccCCccccEEEEecccee-e-eccc---ceEEEeccCCcccccCCCCCCCcCceEEeec
Q 039599 4 AIESIFLNLSTIKGINLNLRAFSNMSNLRVLKFYIPEIS-V-HMSI---EEQLLDSKGCKILRSFPSNLHFVSPVTIDFT 78 (293)
Q Consensus 4 ~~~~i~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~-~~~~---~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 78 (293)
.++.| .+. .....++..+|..+.+|+.+.+..+ +. . ..++ .++.+.+..+ ........+...+|+.+++.
T Consensus 47 ~i~~v--~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c~l~~i~~~~~-l~~I~~~aF~~~~L~~i~lp 121 (379)
T 4h09_A 47 RISEV--RVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADTKLQSYTGMER-VKKFGDYVFQGTDLDDFEFP 121 (379)
T ss_dssp GCSEE--EEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCCCCEEEECTT-CCEECTTTTTTCCCSEEECC
T ss_pred CCEEE--EeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCCCCceEECCce-eeEeccceeccCCcccccCC
Confidence 45666 333 2366788889999999999999653 22 1 1111 1444444332 11111223444477887775
Q ss_pred CCcCCcccCCC-C--CCccEEecccccccccC-ccccCCCCCCEEEeccCcccccc------------ccccccccccce
Q 039599 79 SCINLTDFPHI-S--GNITRLYLDETAIEEVP-SSIKCLTNLKLLRINRCTRLKRV------------STSICKLKSLIA 142 (293)
Q Consensus 79 ~~~~~~~~~~~-~--~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~------------~~~l~~l~~L~~ 142 (293)
.+. ..+... + ..++...+..+ +..+. ..+..+..++...+......... ...+.....+..
T Consensus 122 ~~~--~~i~~~~F~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (379)
T 4h09_A 122 GAT--TEIGNYIFYNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTE 198 (379)
T ss_dssp TTC--CEECTTTTTTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSE
T ss_pred Ccc--ccccccccccceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccc
Confidence 432 222111 1 13444433322 22222 24555666666655443211110 011112222333
Q ss_pred ecccccccCCCCChhhhccccCCceecCCCcccccCCCcccccccCceecCCCC-ccc-cccccCccccceecccCCCcc
Q 039599 143 LSAYGCLNLERFPESLEKMEHLNQINLGRTTITEQRPSSFENVKGLETLGFSEL-DNL-SDNIGNFKSFEYMGAHGSAIS 220 (293)
Q Consensus 143 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~l-~~~~~~l~~L~~L~l~~~~~~ 220 (293)
+.+... ........+..+..++.+.+..+ +.......|..+..|+.+.+..+ ..+ ...+..+..|+.+.+..+ +.
T Consensus 199 ~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~ 275 (379)
T 4h09_A 199 FTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VK 275 (379)
T ss_dssp EECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CS
T ss_pred cccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCCccEeCccccceeehhcccccccc-ce
Confidence 322221 11112233445556666666443 22333345566666776666554 222 224445556666655322 22
Q ss_pred CCCCcCCCCccCcccccCCccccceeecCCccCCcCC-cccCCCCCCcEEeccCCcCCCCc-hhHhhcccCCCC
Q 039599 221 QLPSLSSGLVPLSASLLSGLSLLYWLHLNNCALTSIP-QEIGYLSSLEWLHLRGNNLEGLP-ASIKQISRLESL 292 (293)
Q Consensus 221 ~~~~l~~~l~~l~~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~~~~L~~L~l~~n~l~~~p-~~l~~l~~L~~l 292 (293)
.++. ..|.++.+|+.+.+.++.++.++ .+|.+|.+|+.+.+..+ ++.+. ..+..|.+|+.+
T Consensus 276 ~i~~----------~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 276 TVPY----------LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp EECT----------TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCC
T ss_pred eccc----------cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEE
Confidence 2211 12556667777777666666644 34666777777776533 44432 345555655544
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.88 E-value=2.7e-06 Score=64.48 Aligned_cols=35 Identities=6% Similarity=0.072 Sum_probs=17.5
Q ss_pred CCCEEEeccCccccccccccccccccceecccccc
Q 039599 115 NLKLLRINRCTRLKRVSTSICKLKSLIALSAYGCL 149 (293)
Q Consensus 115 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 149 (293)
.|+.|++++|.++..--..+..+++|++|++++|.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 45555555555443333334455555555555553
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.99 E-value=0.00021 Score=55.05 Aligned_cols=14 Identities=0% Similarity=0.083 Sum_probs=6.4
Q ss_pred CCCCCEEEeccCcc
Q 039599 113 LTNLKLLRINRCTR 126 (293)
Q Consensus 113 l~~L~~L~l~~~~~ 126 (293)
-++|+.|++++|.+
T Consensus 69 N~~L~~L~L~~n~i 82 (197)
T 1pgv_A 69 SKHIEKFSLANTAI 82 (197)
T ss_dssp CSCCCEEECTTSCC
T ss_pred CCCcCEEEccCCCC
Confidence 34444444444443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.97 E-value=0.00035 Score=53.81 Aligned_cols=86 Identities=17% Similarity=0.131 Sum_probs=53.9
Q ss_pred ccCCCCCCEEEeccC-ccccc----cccccccccccceecccccccCC----CCChhhhccccCCceecCCCcccccCCC
Q 039599 110 IKCLTNLKLLRINRC-TRLKR----VSTSICKLKSLIALSAYGCLNLE----RFPESLEKMEHLNQINLGRTTITEQRPS 180 (293)
Q Consensus 110 ~~~l~~L~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 180 (293)
+..-++|+.|+++++ .+... +.+.+..-+.|++|++++|.+.. .+.+.+...+.|++|++++|.+.+....
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345677888888875 44322 23445566778888888887652 3455566677788888888887543222
Q ss_pred ----cccccccCceecCCC
Q 039599 181 ----SFENVKGLETLGFSE 195 (293)
Q Consensus 181 ----~~~~~~~L~~L~l~~ 195 (293)
.+...+.|++|++++
T Consensus 117 ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHhhCCceeEEECCC
Confidence 233345566666653
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.71 E-value=0.0034 Score=44.95 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=37.6
Q ss_pred EEeecCCcCCc--ccCCCCC-CccEEecccccccccCc-cccCCCCCCEEEeccCccc
Q 039599 74 TIDFTSCINLT--DFPHISG-NITRLYLDETAIEEVPS-SIKCLTNLKLLRINRCTRL 127 (293)
Q Consensus 74 ~L~l~~~~~~~--~~~~~~~-~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~ 127 (293)
.++-++.. ++ .+|..++ ++++|+|++|.+..++. .|..+++|++|++++|.+.
T Consensus 12 ~v~Cs~~~-L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSC-CCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCC-CccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 45555555 44 6776554 68888888888888876 5677888888888887643
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.20 E-value=0.0092 Score=42.66 Aligned_cols=37 Identities=27% Similarity=0.230 Sum_probs=27.8
Q ss_pred cccceeecCCccCCcCCc-ccCCCCCCcEEeccCCcCC
Q 039599 241 SLLYWLHLNNCALTSIPQ-EIGYLSSLEWLHLRGNNLE 277 (293)
Q Consensus 241 ~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~l~ 277 (293)
+++++|+|++|.|+.+|. .+..+++|+.|+|++|.+.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 357788888888887664 4567788888888888765
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=57.75 E-value=24 Score=23.24 Aligned_cols=44 Identities=9% Similarity=-0.045 Sum_probs=25.5
Q ss_pred ccccCc-cccCCCCCCEEEeccCccccccccccccccccceecccc
Q 039599 103 IEEVPS-SIKCLTNLKLLRINRCTRLKRVSTSICKLKSLIALSAYG 147 (293)
Q Consensus 103 ~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 147 (293)
++.+.. +|.+|.+|+.+.+..+ ....-...+.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 444443 6677777777777653 2322334556666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=54.15 E-value=19 Score=23.74 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=19.0
Q ss_pred ccCCccccceeecCCccCCcCC-cccCCCCCCcEEeccC
Q 039599 236 LLSGLSLLYWLHLNNCALTSIP-QEIGYLSSLEWLHLRG 273 (293)
Q Consensus 236 ~~~~~~~L~~L~l~~n~i~~l~-~~~~~~~~L~~L~l~~ 273 (293)
.|.+|.+|+.+.+-.+ ++.+. .+|.+|.+|+.+.+..
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3555566666655543 33322 2455566666665544
Done!