BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039601
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FFU|A Chain A, Crystal Structure Of Putative Maoc-Like (Monoamine
Oxidase-Like) Protein, Similar To Nodn From Sinorhizo
Bium Meliloti 1021
pdb|4FFU|B Chain B, Crystal Structure Of Putative Maoc-Like (Monoamine
Oxidase-Like) Protein, Similar To Nodn From Sinorhizo
Bium Meliloti 1021
pdb|4FFU|C Chain C, Crystal Structure Of Putative Maoc-Like (Monoamine
Oxidase-Like) Protein, Similar To Nodn From Sinorhizo
Bium Meliloti 1021
pdb|4FFU|D Chain D, Crystal Structure Of Putative Maoc-Like (Monoamine
Oxidase-Like) Protein, Similar To Nodn From Sinorhizo
Bium Meliloti 1021
pdb|4FFU|E Chain E, Crystal Structure Of Putative Maoc-Like (Monoamine
Oxidase-Like) Protein, Similar To Nodn From Sinorhizo
Bium Meliloti 1021
pdb|4FFU|F Chain F, Crystal Structure Of Putative Maoc-Like (Monoamine
Oxidase-Like) Protein, Similar To Nodn From Sinorhizo
Bium Meliloti 1021
pdb|4FFU|G Chain G, Crystal Structure Of Putative Maoc-Like (Monoamine
Oxidase-Like) Protein, Similar To Nodn From Sinorhizo
Bium Meliloti 1021
pdb|4FFU|H Chain H, Crystal Structure Of Putative Maoc-Like (Monoamine
Oxidase-Like) Protein, Similar To Nodn From Sinorhizo
Bium Meliloti 1021
pdb|4FFU|I Chain I, Crystal Structure Of Putative Maoc-Like (Monoamine
Oxidase-Like) Protein, Similar To Nodn From Sinorhizo
Bium Meliloti 1021
pdb|4FFU|J Chain J, Crystal Structure Of Putative Maoc-Like (Monoamine
Oxidase-Like) Protein, Similar To Nodn From Sinorhizo
Bium Meliloti 1021
pdb|4FFU|K Chain K, Crystal Structure Of Putative Maoc-Like (Monoamine
Oxidase-Like) Protein, Similar To Nodn From Sinorhizo
Bium Meliloti 1021
pdb|4FFU|L Chain L, Crystal Structure Of Putative Maoc-Like (Monoamine
Oxidase-Like) Protein, Similar To Nodn From Sinorhizo
Bium Meliloti 1021
Length = 176
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 57 DQIRFVIPLKYLENNIIRELFRIAEDEFGMPGSGPITLPCDAIVMKYVVSLIQKHV 112
D++RFV P+ + R ED+ PG+G + C+ I + V L H+
Sbjct: 109 DRLRFVRPVHIGDTIRTRVTIAAKEDDPKRPGAGRVVERCEVINQRGEVVLAADHI 164
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 78 RIAEDEFGMPGSGPITLPCDAIVMKYVVSLIQKHVAKDVEKAILLSLSVIGHCLPSSYLH 137
R A D + + I LP + + V++L +K + K +EK + V+ SS+ H
Sbjct: 200 RAANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVSEEQVLKDIQESSFPH 259
Query: 138 Q 138
Sbjct: 260 N 260
>pdb|2WA8|A Chain A, Structural Basis Of N-End Rule Substrate Recognition In
Escherichia Coli By The Clpap Adaptor Protein Clps - The
Phe Peptide Structure
pdb|2WA8|C Chain C, Structural Basis Of N-End Rule Substrate Recognition In
Escherichia Coli By The Clpap Adaptor Protein Clps - The
Phe Peptide Structure
Length = 107
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 101 MKYVVSLIQKHVAKDVEKAILLSLSV 126
M++V+ ++QK + DVE+A L L+V
Sbjct: 40 MEFVIDVLQKFFSYDVERATQLMLAV 65
>pdb|1LZW|A Chain A, Structural Basis Of Clps-Mediated Switch In Clpa Substrate
Recognition
pdb|1MG9|A Chain A, The Structural Basis Of Clps-Mediated Switch In Clpa
Substrate Recognition
Length = 106
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 101 MKYVVSLIQKHVAKDVEKAILLSLSV 126
M++V+ ++QK + DVE+A L L+V
Sbjct: 40 MEFVIDVLQKFFSYDVERATQLMLAV 65
>pdb|2W9R|A Chain A, Structural Basis Of N-End Rule Substrate Recognition In
Escherichia Coli By The Clpap Adaptor Protein Clps
pdb|2WA9|A Chain A, Structural Basis Of N-end Rule Substrate Recognition In
Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
Peptide Structure
pdb|2WA9|B Chain B, Structural Basis Of N-end Rule Substrate Recognition In
Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
Peptide Structure
pdb|2WA9|C Chain C, Structural Basis Of N-end Rule Substrate Recognition In
Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
Peptide Structure
pdb|2WA9|D Chain D, Structural Basis Of N-end Rule Substrate Recognition In
Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
Peptide Structure
pdb|2WA9|E Chain E, Structural Basis Of N-end Rule Substrate Recognition In
Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
Peptide Structure
pdb|2WA9|F Chain F, Structural Basis Of N-end Rule Substrate Recognition In
Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
Peptide Structure
pdb|2WA9|G Chain G, Structural Basis Of N-end Rule Substrate Recognition In
Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
Peptide Structure
Length = 108
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 101 MKYVVSLIQKHVAKDVEKAILLSLSV 126
M++V+ ++QK + DVE+A L L+V
Sbjct: 40 MEFVIDVLQKFFSYDVERATQLMLAV 65
>pdb|3O2B|A Chain A, E. Coli Clps In Complex With A Phe N-End Rule Peptide
pdb|3O2B|C Chain C, E. Coli Clps In Complex With A Phe N-End Rule Peptide
pdb|3O2H|A Chain A, E. Coli Clps In Complex With A Leu N-End Rule Peptide
Length = 105
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 101 MKYVVSLIQKHVAKDVEKAILLSLSV 126
M++V+ ++QK + DVE+A L L+V
Sbjct: 39 MEFVIDVLQKFFSYDVERATQLMLAV 64
>pdb|1MBU|C Chain C, Crystal Structure Analysis Of Clpsn Heterodimer
pdb|1MBU|D Chain D, Crystal Structure Analysis Of Clpsn Heterodimer
pdb|1MBV|B Chain B, Crystal Structure Analysis Of Clpsn Heterodimer Tetragonal
Form
pdb|1MBX|C Chain C, Crystal Structure Analysis Of Clpsn With Transition Metal
Ion Bound
pdb|1MBX|D Chain D, Crystal Structure Analysis Of Clpsn With Transition Metal
Ion Bound
pdb|1R6O|C Chain C, Atp-Dependent Clp Protease Atp-Binding Subunit ClpaATP-
Dependent Clp Protease Adaptor Protein Clps
pdb|1R6O|D Chain D, Atp-Dependent Clp Protease Atp-Binding Subunit ClpaATP-
Dependent Clp Protease Adaptor Protein Clps
pdb|1R6Q|C Chain C, Clpns With Fragments
pdb|1R6Q|D Chain D, Clpns With Fragments
Length = 106
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 101 MKYVVSLIQKHVAKDVEKAILLSLSV 126
M++V+ ++QK + DVE+A L L+V
Sbjct: 40 MEFVIDVLQKFFSYDVERATQLMLAV 65
>pdb|3O2O|A Chain A, Structure Of E. Coli Clps Ring Complex
pdb|3O2O|B Chain B, Structure Of E. Coli Clps Ring Complex
pdb|3O2O|C Chain C, Structure Of E. Coli Clps Ring Complex
pdb|3O2O|D Chain D, Structure Of E. Coli Clps Ring Complex
pdb|3O2O|E Chain E, Structure Of E. Coli Clps Ring Complex
pdb|3O2O|F Chain F, Structure Of E. Coli Clps Ring Complex
pdb|3O2O|G Chain G, Structure Of E. Coli Clps Ring Complex
pdb|3O2O|H Chain H, Structure Of E. Coli Clps Ring Complex
Length = 85
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 97 DAIVMKYVVSLIQKHVAKDVEKAILLSLSV 126
D M++V+ ++QK + DVE+A L L+V
Sbjct: 15 DYTPMEFVIDVLQKFFSYDVERATQLMLAV 44
>pdb|3O1F|B Chain B, P1 Crystal Form Of E. Coli Clps At 1.4 A Resolution
Length = 81
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 101 MKYVVSLIQKHVAKDVEKAILLSLSV 126
M++V+ ++QK + DVE+A L L+V
Sbjct: 15 MEFVIDVLQKFFSYDVERATQLMLAV 40
>pdb|3O1F|A Chain A, P1 Crystal Form Of E. Coli Clps At 1.4 A Resolution
Length = 81
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 101 MKYVVSLIQKHVAKDVEKAILLSLSV 126
M++V+ ++QK + DVE+A L L+V
Sbjct: 15 MEFVIDVLQKFFSYDVERATQLMLAV 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,719,405
Number of Sequences: 62578
Number of extensions: 127765
Number of successful extensions: 260
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 36
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)