BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039601
(150 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1
Length = 90
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 38 ESCSTSSTAEKGHFVVHTTDQIR-FVIPLKYLENNIIRELFRIAEDEFGM--PGSGPITL 94
++ S + EKG+ V+ +++R FVIP+ YL ++L AE+EFG P G +T+
Sbjct: 17 QASSKAVDVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGG-LTI 75
Query: 95 PCDAIVMKYVVSLIQ 109
PC V +++ S +
Sbjct: 76 PCSEDVFQHITSFLN 90
>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1
Length = 92
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 23 LRISLPRPTAGAADAESCSTSSTAEKGHFVVHTTDQIR-FVIPLKYLENNIIRELFRIAE 81
R+ R T+ AA+ ++ S S KG+ VV+ D++R F+IP+ YL ++L AE
Sbjct: 3 FRLPGIRKTSIAAN-QASSKSVEVPKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAE 61
Query: 82 DEFGMPGS-GPITLPC 96
+EFG G +T+PC
Sbjct: 62 EEFGYDHPMGGLTIPC 77
>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1
Length = 82
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 41 STSSTAEKGHFVVHTTDQI-RFVIPLKYLENNIIRELFRIAEDEFGMPGS-GPITLPCDA 98
S ++ A KG+ V+ +++ RFVIP+ YL ++L AE+EFG G +T+PC
Sbjct: 12 SKAADAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSE 71
Query: 99 IVMKYVVSLIQ 109
V + + S +
Sbjct: 72 DVFQCITSCLN 82
>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var.
radiata GN=ARG7 PE=2 SV=1
Length = 92
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 34 AADAESCSTSSTAEKGHFVVHTTDQI-RFVIPLKYLENNIIRELFRIAEDEFGMPGS-GP 91
+A E+ S A KG+ V+ + + RFVIP+ +L + ++L AE+EFG G
Sbjct: 13 SARNEASSKVLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGG 72
Query: 92 ITLPCDAIVMKYVVSLI 108
+T+PC + +++ S +
Sbjct: 73 LTIPCSEDLFQHITSCL 89
>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1
Length = 82
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 41 STSSTAEKGHFVVHTTDQI-RFVIPLKYLENNIIRELFRIAEDEFGMPGS-GPITLPCDA 98
S + A KG+ V+ +++ RFVIP+ Y+ ++L AE+EFG G +T+PC
Sbjct: 12 SNAVDAPKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSE 71
Query: 99 IVMKYVVSLIQ 109
V + + +
Sbjct: 72 EVFQRITCCLN 82
>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1
Length = 93
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 48 KGHFVVHTTDQIR-FVIPLKYLENNIIRELFRIAEDEFGMPGS-GPITLPC 96
KG+ V+ D++R F IP+ YL +EL AE+EFG G +T+PC
Sbjct: 28 KGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPC 78
>sp|Q6PI53|MED24_XENLA Mediator of RNA polymerase II transcription subunit 24 OS=Xenopus
laevis GN=med24 PE=2 SV=1
Length = 988
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 22/94 (23%)
Query: 43 SSTAEKGHF---VVHTTDQIRFVIPLKYLENNIIRELFRIAEDEFGMPGSGPITLPCDAI 99
SST EKG +H D + + + + NN+++EL R EF + A+
Sbjct: 714 SSTLEKGWVDSRTLHNFDTLLHMGGVYWFCNNLVKELLRETRLEFAL----------RAV 763
Query: 100 VMKYVVSLIQKHVAKDVEKAILLSLSVIGHCLPS 133
+ Y + + D+++ L+L+++GH LPS
Sbjct: 764 ELLYAIFCL------DMQQ---LTLTLLGHVLPS 788
>sp|Q924C1|XPO5_MOUSE Exportin-5 OS=Mus musculus GN=Xpo5 PE=2 SV=1
Length = 1204
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 2 ITPKKLMKLAKKWQKLAASKRLRISLPRPTAGAADAESCSTSSTAEKGHFVVHTTDQIRF 61
+ PK ++A +W K S + SCST+ T E G + + +++
Sbjct: 453 LDPKTSFQMAAEWLKYQLSASI---------DTGPVNSCSTAGTGEGGFCSIFSPSYVQW 503
Query: 62 VIPLKYLENNIIRELFRIAEDEFGMPGSGPITL 94
+LE ++I ++FR + E +P S I L
Sbjct: 504 EAMTFFLE-SVINQMFRTLDKE-ELPVSDGIEL 534
>sp|A1JMC5|CLPS_YERE8 ATP-dependent Clp protease adapter protein ClpS OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=clpS PE=3 SV=1
Length = 106
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 97 DAIVMKYVVSLIQKHVAKDVEKAILLSLSV-----------IGHCLPSSYLHQEQY---N 142
D M++V+ ++QK + D+E+A L L+V + H QY N
Sbjct: 36 DYTPMEFVIDVLQKFFSYDIERATQLMLNVHYQGKAICGVFTAEVAETKVAHVNQYAREN 95
Query: 143 QQPLICSF 150
+ PL+C+
Sbjct: 96 EHPLLCTL 103
>sp|B1JRG2|CLPS_YERPY ATP-dependent Clp protease adapter protein ClpS OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=clpS
PE=3 SV=1
Length = 106
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 97 DAIVMKYVVSLIQKHVAKDVEKAILLSLSV-----------IGHCLPSSYLHQEQY---N 142
D M++V+ ++QK + D+E+A L L+V + H QY N
Sbjct: 36 DYTPMEFVIDVLQKFFSYDIERATQLMLNVHYQGKAICGVFTAEVAETKVAHVNQYAREN 95
Query: 143 QQPLICSF 150
+ PL+C+
Sbjct: 96 EHPLLCTL 103
>sp|Q66CL0|CLPS_YERPS ATP-dependent Clp protease adapter protein ClpS OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=clpS
PE=3 SV=1
Length = 106
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 97 DAIVMKYVVSLIQKHVAKDVEKAILLSLSV-----------IGHCLPSSYLHQEQY---N 142
D M++V+ ++QK + D+E+A L L+V + H QY N
Sbjct: 36 DYTPMEFVIDVLQKFFSYDIERATQLMLNVHYQGKAICGVFTAEVAETKVAHVNQYAREN 95
Query: 143 QQPLICSF 150
+ PL+C+
Sbjct: 96 EHPLLCTL 103
>sp|A4TN41|CLPS_YERPP ATP-dependent Clp protease adapter protein ClpS OS=Yersinia pestis
(strain Pestoides F) GN=clpS PE=3 SV=1
Length = 106
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 97 DAIVMKYVVSLIQKHVAKDVEKAILLSLSV-----------IGHCLPSSYLHQEQY---N 142
D M++V+ ++QK + D+E+A L L+V + H QY N
Sbjct: 36 DYTPMEFVIDVLQKFFSYDIERATQLMLNVHYQGKAICGVFTAEVAETKVAHVNQYAREN 95
Query: 143 QQPLICSF 150
+ PL+C+
Sbjct: 96 EHPLLCTL 103
>sp|Q1CGD9|CLPS_YERPN ATP-dependent Clp protease adapter protein ClpS OS=Yersinia pestis
bv. Antiqua (strain Nepal516) GN=clpS PE=3 SV=1
Length = 106
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 97 DAIVMKYVVSLIQKHVAKDVEKAILLSLSV-----------IGHCLPSSYLHQEQY---N 142
D M++V+ ++QK + D+E+A L L+V + H QY N
Sbjct: 36 DYTPMEFVIDVLQKFFSYDIERATQLMLNVHYQGKAICGVFTAEVAETKVAHVNQYAREN 95
Query: 143 QQPLICSF 150
+ PL+C+
Sbjct: 96 EHPLLCTL 103
>sp|A9R4Y5|CLPS_YERPG ATP-dependent Clp protease adapter protein ClpS OS=Yersinia pestis
bv. Antiqua (strain Angola) GN=clpS PE=3 SV=1
Length = 106
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 97 DAIVMKYVVSLIQKHVAKDVEKAILLSLSV-----------IGHCLPSSYLHQEQY---N 142
D M++V+ ++QK + D+E+A L L+V + H QY N
Sbjct: 36 DYTPMEFVIDVLQKFFSYDIERATQLMLNVHYQGKAICGVFTAEVAETKVAHVNQYAREN 95
Query: 143 QQPLICSF 150
+ PL+C+
Sbjct: 96 EHPLLCTL 103
>sp|Q8ZGD5|CLPS_YERPE ATP-dependent Clp protease adapter protein ClpS OS=Yersinia pestis
GN=clpS PE=3 SV=1
Length = 106
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 97 DAIVMKYVVSLIQKHVAKDVEKAILLSLSV-----------IGHCLPSSYLHQEQY---N 142
D M++V+ ++QK + D+E+A L L+V + H QY N
Sbjct: 36 DYTPMEFVIDVLQKFFSYDIERATQLMLNVHYQGKAICGVFTAEVAETKVAHVNQYAREN 95
Query: 143 QQPLICSF 150
+ PL+C+
Sbjct: 96 EHPLLCTL 103
>sp|B2KA00|CLPS_YERPB ATP-dependent Clp protease adapter protein ClpS OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=clpS
PE=3 SV=1
Length = 106
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 97 DAIVMKYVVSLIQKHVAKDVEKAILLSLSV-----------IGHCLPSSYLHQEQY---N 142
D M++V+ ++QK + D+E+A L L+V + H QY N
Sbjct: 36 DYTPMEFVIDVLQKFFSYDIERATQLMLNVHYQGKAICGVFTAEVAETKVAHVNQYAREN 95
Query: 143 QQPLICSF 150
+ PL+C+
Sbjct: 96 EHPLLCTL 103
>sp|Q1CA97|CLPS_YERPA ATP-dependent Clp protease adapter protein ClpS OS=Yersinia pestis
bv. Antiqua (strain Antiqua) GN=clpS PE=3 SV=1
Length = 106
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 97 DAIVMKYVVSLIQKHVAKDVEKAILLSLSV-----------IGHCLPSSYLHQEQY---N 142
D M++V+ ++QK + D+E+A L L+V + H QY N
Sbjct: 36 DYTPMEFVIDVLQKFFSYDIERATQLMLNVHYQGKAICGVFTAEVAETKVAHVNQYAREN 95
Query: 143 QQPLICSF 150
+ PL+C+
Sbjct: 96 EHPLLCTL 103
>sp|A7FJZ4|CLPS_YERP3 ATP-dependent Clp protease adapter protein ClpS OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=clpS PE=3 SV=1
Length = 106
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 97 DAIVMKYVVSLIQKHVAKDVEKAILLSLSV-----------IGHCLPSSYLHQEQY---N 142
D M++V+ ++QK + D+E+A L L+V + H QY N
Sbjct: 36 DYTPMEFVIDVLQKFFSYDIERATQLMLNVHYQGKAICGVFTAEVAETKVAHVNQYAREN 95
Query: 143 QQPLICSF 150
+ PL+C+
Sbjct: 96 EHPLLCTL 103
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,911,634
Number of Sequences: 539616
Number of extensions: 1931950
Number of successful extensions: 4473
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 4467
Number of HSP's gapped (non-prelim): 22
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)