Query 039601
Match_columns 150
No_of_seqs 124 out of 660
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 19:26:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039601.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039601hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3drz_A BTB/POZ domain-containi 57.9 21 0.00072 24.7 5.3 61 49-111 6-71 (107)
2 2vkp_A BTB/POZ domain-containi 57.2 15 0.00052 24.2 4.3 56 52-111 12-73 (109)
3 1vd2_A Protein kinase C, IOTA 51.4 15 0.00051 25.6 3.5 35 56-94 15-49 (89)
4 1und_A Advillin, P92; actin bi 47.4 5 0.00017 23.9 0.5 20 66-85 1-20 (37)
5 2al3_A TUG long isoform; TUG U 39.9 25 0.00084 24.7 3.2 37 50-88 11-47 (90)
6 2vpk_A Myoneurin; transcriptio 39.8 41 0.0014 22.5 4.3 47 58-111 31-82 (116)
7 1w8x_N Protein P31, protein C, 38.1 10 0.00035 28.0 1.0 29 46-74 85-123 (126)
8 1r29_A B-cell lymphoma 6 prote 32.8 49 0.0017 22.5 3.8 50 58-111 38-91 (127)
9 3ga1_A Nucleus accumbens-assoc 32.6 71 0.0024 21.8 4.7 51 53-111 38-92 (129)
10 2xko_C PIPX, global nitrogen r 29.1 6.5 0.00022 27.9 -1.3 13 66-78 5-17 (89)
11 3qli_A Coenzyme A transferase; 28.1 23 0.00079 31.2 1.7 46 40-86 398-454 (455)
12 2if5_A Zinc finger and BTB dom 27.0 95 0.0032 20.7 4.5 51 58-111 34-87 (120)
13 2i46_A Adrenocortical dysplasi 26.2 50 0.0017 25.4 3.1 47 45-94 47-94 (161)
14 2bkf_A Zinc-finger protein NBR 24.7 46 0.0016 23.3 2.4 53 53-108 12-73 (87)
15 1yu8_X Villin; alpha helix, 3- 24.6 19 0.00064 24.0 0.4 20 66-85 31-50 (67)
16 3drx_A BTB/POZ domain-containi 24.3 68 0.0023 25.3 3.7 62 48-111 11-77 (202)
17 1pc2_A Mitochondria fission pr 23.9 33 0.0011 25.8 1.7 51 67-120 4-55 (152)
18 1dd4_C 50S ribosomal protein L 23.1 57 0.002 19.5 2.4 21 72-92 17-37 (40)
19 1zav_U 50S ribosomal protein L 22.3 49 0.0017 18.6 1.8 13 73-85 18-30 (30)
20 1ujs_A Actin-binding LIM prote 22.0 22 0.00075 24.9 0.3 20 66-85 46-65 (88)
21 2ppi_A Gigaxonin; BTB domain, 21.8 1.5E+02 0.0052 20.7 4.9 54 57-111 55-111 (144)
22 1qzp_A Dematin; villin headpie 21.8 17 0.00057 24.2 -0.3 20 66-85 32-51 (68)
23 1z3x_A Putative cytidyltransfe 21.5 6.2 0.00021 32.3 -3.0 29 44-73 208-236 (238)
24 1wj6_A KIAA0049 protein, RSGI 21.3 63 0.0021 23.2 2.6 54 53-109 20-82 (101)
25 2k6m_S Supervillin; SVHP, HP, 20.1 21 0.0007 23.8 -0.1 20 66-85 31-50 (67)
No 1
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=57.85 E-value=21 Score=24.69 Aligned_cols=61 Identities=10% Similarity=0.147 Sum_probs=43.4
Q ss_pred CeEEEEeccceeEeecccCcC-cH--HHHHHHHHhHHhcC--CCCCCCeEecCcHHHHHHHHHHHhcc
Q 039601 49 GHFVVHTTDQIRFVIPLKYLE-NN--IIRELFRIAEDEFG--MPGSGPITLPCDAIVMKYVVSLIQKH 111 (150)
Q Consensus 49 G~~~VyVGe~~RfvVp~~yLn-hP--~F~~LL~~aeEEfG--~~~~G~L~IPC~~~~Fe~vl~~i~~~ 111 (150)
..+.+.|| +.+|.+...-|. +| .|..|.... .++. .+.+|.+-|-.|...|++||..++.+
T Consensus 6 ~~v~LNVG-G~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g 71 (107)
T 3drz_A 6 KWVRLNVG-GTYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHG 71 (107)
T ss_dssp CEEEEEET-TEEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHHHS
T ss_pred CEEEEEEC-CEEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhCCC
Confidence 45667788 678888876664 33 566665421 1232 23679999999999999999999876
No 2
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=57.16 E-value=15 Score=24.22 Aligned_cols=56 Identities=9% Similarity=0.079 Sum_probs=39.9
Q ss_pred EEEecc---ceeEeecccCc--CcHHHHHHHHHhHHhcCCCCCCCeEec-CcHHHHHHHHHHHhcc
Q 039601 52 VVHTTD---QIRFVIPLKYL--ENNIIRELFRIAEDEFGMPGSGPITLP-CDAIVMKYVVSLIQKH 111 (150)
Q Consensus 52 ~VyVGe---~~RfvVp~~yL--nhP~F~~LL~~aeEEfG~~~~G~L~IP-C~~~~Fe~vl~~i~~~ 111 (150)
.+.||+ +++|-+.-..| ..|.|+.++...-.|- . ..|.|| .+.+.|+.++..+-.+
T Consensus 12 ~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~iYt~ 73 (109)
T 2vkp_A 12 HFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYMYSD 73 (109)
T ss_dssp EEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHHC
T ss_pred EEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHHcCC
Confidence 344555 38888888887 5899999997533331 2 678887 6899999999998876
No 3
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=51.42 E-value=15 Score=25.61 Aligned_cols=35 Identities=11% Similarity=0.010 Sum_probs=28.3
Q ss_pred ccceeEeecccCcCcHHHHHHHHHhHHhcCCCCCCCeEe
Q 039601 56 TDQIRFVIPLKYLENNIIRELFRIAEDEFGMPGSGPITL 94 (150)
Q Consensus 56 Ge~~RfvVp~~yLnhP~F~~LL~~aeEEfG~~~~G~L~I 94 (150)
||-.|+-||. ...|.+|.++-.+-|++..+.++++
T Consensus 15 gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~~~~f~l 49 (89)
T 1vd2_A 15 GDIMITHFEP----SISFEGLCNEVRDMCSFDNEQLFTM 49 (89)
T ss_dssp SCEEEEEECT----TCCHHHHHHHHHHHTTCCSSCCEEE
T ss_pred CeEEEEECCC----CCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 6778999987 4689999999999999875555544
No 4
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=47.37 E-value=5 Score=23.94 Aligned_cols=20 Identities=25% Similarity=0.508 Sum_probs=17.5
Q ss_pred cCcCcHHHHHHHHHhHHhcC
Q 039601 66 KYLENNIIRELFRIAEDEFG 85 (150)
Q Consensus 66 ~yLnhP~F~~LL~~aeEEfG 85 (150)
.||+.-.|++++.++.+||-
T Consensus 1 ~yLsd~dF~~vFgmsr~eF~ 20 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQFA 20 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHH
Confidence 48999999999999999974
No 5
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=39.93 E-value=25 Score=24.71 Aligned_cols=37 Identities=5% Similarity=0.073 Sum_probs=28.2
Q ss_pred eEEEEeccceeEeecccCcCcHHHHHHHHHhHHhcCCCC
Q 039601 50 HFVVHTTDQIRFVIPLKYLENNIIRELFRIAEDEFGMPG 88 (150)
Q Consensus 50 ~~~VyVGe~~RfvVp~~yLnhP~F~~LL~~aeEEfG~~~ 88 (150)
++.|.-...+|+.|++ -..-.+.++|++|=+.|||+.
T Consensus 11 ~v~Vl~~n~rr~~VKv--tp~t~L~~VL~eaC~K~gl~~ 47 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKV--TPSTVLLQVLEDTCRRQDFNP 47 (90)
T ss_dssp CEEEECTTSCEEEECC--CTTSBHHHHHHHHHHHTTCCG
T ss_pred EEEEEcCCCcEEEEEE--CCCCCHHHHHHHHHHHhCCCh
Confidence 3444445789999998 345578899999999999974
No 6
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=39.76 E-value=41 Score=22.48 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=36.8
Q ss_pred ceeEeecccCc--CcHHHHHHHHHhHHhcCCCCCCCeEec---CcHHHHHHHHHHHhcc
Q 039601 58 QIRFVIPLKYL--ENNIIRELFRIAEDEFGMPGSGPITLP---CDAIVMKYVVSLIQKH 111 (150)
Q Consensus 58 ~~RfvVp~~yL--nhP~F~~LL~~aeEEfG~~~~G~L~IP---C~~~~Fe~vl~~i~~~ 111 (150)
+++|-+.-..| ..|.|+.++... .++.+.|+ .+...|+.++..+-.+
T Consensus 31 ~~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~Yt~ 82 (116)
T 2vpk_A 31 EFQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFIYTG 82 (116)
T ss_dssp TEEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHHHHS
T ss_pred CEEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHHcCC
Confidence 45777766666 579999998754 36778888 7899999999988775
No 7
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=38.09 E-value=10 Score=27.96 Aligned_cols=29 Identities=28% Similarity=0.577 Sum_probs=19.5
Q ss_pred CCCCeEEEEeccceeEe----------ecccCcCcHHHH
Q 039601 46 AEKGHFVVHTTDQIRFV----------IPLKYLENNIIR 74 (150)
Q Consensus 46 vpkG~~~VyVGe~~Rfv----------Vp~~yLnhP~F~ 74 (150)
-..|||||.|-.+-.|+ +|+-|||.|+-+
T Consensus 85 G~QGYfPlL~~~~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 85 GKQGYFPLLVPGRAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCCSSCCEEECCSSSSEEEEEEEESSCCCCSCCC-----
T ss_pred CCcccceeeccchhhhhhhhhcCCCcceeeEEEeceeee
Confidence 46899999997666665 789999988754
No 8
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=32.81 E-value=49 Score=22.47 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=38.7
Q ss_pred ceeEeecccCc--CcHHHHHHHHHhHHhcCCCCCCCeEe-c-CcHHHHHHHHHHHhcc
Q 039601 58 QIRFVIPLKYL--ENNIIRELFRIAEDEFGMPGSGPITL-P-CDAIVMKYVVSLIQKH 111 (150)
Q Consensus 58 ~~RfvVp~~yL--nhP~F~~LL~~aeEEfG~~~~G~L~I-P-C~~~~Fe~vl~~i~~~ 111 (150)
+++|-+.-..| ..|.|+.++...-.| ....|.| + .+...|+.++..+-.+
T Consensus 38 ~~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~Ytg 91 (127)
T 1r29_A 38 REQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFMYTS 91 (127)
T ss_dssp TEEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHHHHS
T ss_pred CEEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHHcCC
Confidence 46777776666 689999999865444 4678999 4 6899999999998765
No 9
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=32.64 E-value=71 Score=21.79 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=38.5
Q ss_pred EEeccceeEeecccCcC--cHHHHHHHHHhHHhcCCCCCCCeEec--CcHHHHHHHHHHHhcc
Q 039601 53 VHTTDQIRFVIPLKYLE--NNIIRELFRIAEDEFGMPGSGPITLP--CDAIVMKYVVSLIQKH 111 (150)
Q Consensus 53 VyVGe~~RfvVp~~yLn--hP~F~~LL~~aeEEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~ 111 (150)
+.|| +++|-+.-..|. .|.|++++... ....|.|| .+.+.|+.++..+-.+
T Consensus 38 l~v~-~~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~iYtg 92 (129)
T 3ga1_A 38 VVVK-GHAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFCYTG 92 (129)
T ss_dssp EEET-TEEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHHHHS
T ss_pred EEEC-CEEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHHhCC
Confidence 3344 466666655554 69999999875 46788996 8999999999998765
No 10
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=29.07 E-value=6.5 Score=27.90 Aligned_cols=13 Identities=23% Similarity=0.539 Sum_probs=9.8
Q ss_pred cCcCcHHHHHHHH
Q 039601 66 KYLENNIIRELFR 78 (150)
Q Consensus 66 ~yLnhP~F~~LL~ 78 (150)
.|||||.|.-|-.
T Consensus 5 ~YLNHPtFGlLy~ 17 (89)
T 2xko_C 5 NYLNHPTFGLLYQ 17 (89)
T ss_dssp CEEEETTTEEEEE
T ss_pred ccccCCccchhhe
Confidence 5999999876543
No 11
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=28.13 E-value=23 Score=31.21 Aligned_cols=46 Identities=13% Similarity=0.076 Sum_probs=30.9
Q ss_pred CCCCcCCCCCeEEEEecc-----------ceeEeecccCcCcHHHHHHHHHhHHhcCC
Q 039601 40 CSTSSTAEKGHFVVHTTD-----------QIRFVIPLKYLENNIIRELFRIAEDEFGM 86 (150)
Q Consensus 40 ~~~~~~vpkG~~~VyVGe-----------~~RfvVp~~yLnhP~F~~LL~~aeEEfG~ 86 (150)
|+.+.+.+++++-+.|-| ++|-.-=+. +.||.||+.|.+..++.|+
T Consensus 398 ~~~~vtt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI~-iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 398 IDGPVTTPRIDTHYIVTEFGAVNLKGLSSTERALRIIE-LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp CSSSCSBCTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC
T ss_pred CCCCcccCcccccEEEeccEEEECCCCCHHHHHHHHHH-ccCcchHHHHHHHHHHcCC
Confidence 433445677777666643 244443334 8899999999988888774
No 12
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=27.01 E-value=95 Score=20.65 Aligned_cols=51 Identities=10% Similarity=0.073 Sum_probs=36.2
Q ss_pred ceeEeecccCc--CcHHHHHHHHHhHHhcCCCCCCCeEec-CcHHHHHHHHHHHhcc
Q 039601 58 QIRFVIPLKYL--ENNIIRELFRIAEDEFGMPGSGPITLP-CDAIVMKYVVSLIQKH 111 (150)
Q Consensus 58 ~~RfvVp~~yL--nhP~F~~LL~~aeEEfG~~~~G~L~IP-C~~~~Fe~vl~~i~~~ 111 (150)
+++|-+.-..| ..|.|+.++...-.| .....|.|+ .+...|+.++..+-.+
T Consensus 34 ~~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~ll~~~Yt~ 87 (120)
T 2if5_A 34 GREFPTHRSVLAACSQYFKKLFTSGAVV---DQQNVYEIDFVSAEALTALMDFAYTA 87 (120)
T ss_dssp TEEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCSSCHHHHHHHHHHHHHS
T ss_pred CEEEeHHHHHHHHhCHHHHHHhcCCccc---cCCceEEeCCCCHHHHHHHHHHHcCC
Confidence 56777766666 479999999753322 135678888 5899999999998765
No 13
>2i46_A Adrenocortical dysplasia protein homolog; TPP1, OB fold, POT1 binding, protein binding; 2.70A {Homo sapiens}
Probab=26.15 E-value=50 Score=25.36 Aligned_cols=47 Identities=19% Similarity=0.202 Sum_probs=29.8
Q ss_pred CCCCCeEEEEeccceeEeecccCcCcHHHHHHHHHhHHhcCCC-CCCCeEe
Q 039601 45 TAEKGHFVVHTTDQIRFVIPLKYLENNIIRELFRIAEDEFGMP-GSGPITL 94 (150)
Q Consensus 45 ~vpkG~~~VyVGe~~RfvVp~~yLnhP~F~~LL~~aeEEfG~~-~~G~L~I 94 (150)
+.+.---++.|.|+.-++ ++|-.+.-+..++.-|+||||. .+|.|.|
T Consensus 47 dt~~v~A~llvSDgthsv---rclvTrEA~~~sdwEEk~Fgfr~~egrlll 94 (161)
T 2i46_A 47 DTSDVGATLLVSDGTHSV---RCLVTREALDTSDWEEKEFGFRGTEGRLLL 94 (161)
T ss_dssp CCTTSCEEEEEECSSCEE---EEEECHHHHHTSCCTTSCSSCTTCTTEEEE
T ss_pred CCCCceeEEEEcCCceEE---EEEecHHHhhhhhhhhhhcCcccccceEEE
Confidence 444444556688864432 3444555666667778899997 5788765
No 14
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=24.73 E-value=46 Score=23.27 Aligned_cols=53 Identities=8% Similarity=0.188 Sum_probs=38.1
Q ss_pred EEeccceeEeecccCcCcHHHHHHHHHhHHhcCCC--------C-CCCeEecCcHHHHHHHHHHH
Q 039601 53 VHTTDQIRFVIPLKYLENNIIRELFRIAEDEFGMP--------G-SGPITLPCDAIVMKYVVSLI 108 (150)
Q Consensus 53 VyVGe~~RfvVp~~yLnhP~F~~LL~~aeEEfG~~--------~-~G~L~IPC~~~~Fe~vl~~i 108 (150)
-|.||.+||.|. ++.++-|.+|-.+...-||+. . +-.|+|.=+. .|+..++..
T Consensus 12 ~f~ge~~rf~vs--~~~~~tweel~~mvk~~f~L~~~~ikY~DEenD~v~i~Sq~-E~eEAlkva 73 (87)
T 2bkf_A 12 TFKNEIQSFLVS--DPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQG-EYEEALKMA 73 (87)
T ss_dssp EETTEEEEEEES--CGGGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHH-HHHHHHHHH
T ss_pred EEcCCeeEEEec--cCCCCCHHHHHHHHHHHcCCCceEEEEEcCCCCEEEEecHH-HHHHHHHHh
Confidence 456889998875 889999999999999999963 2 3446666544 444444443
No 15
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=24.56 E-value=19 Score=24.02 Aligned_cols=20 Identities=15% Similarity=0.419 Sum_probs=18.5
Q ss_pred cCcCcHHHHHHHHHhHHhcC
Q 039601 66 KYLENNIIRELFRIAEDEFG 85 (150)
Q Consensus 66 ~yLnhP~F~~LL~~aeEEfG 85 (150)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 59999999999999999984
No 16
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=24.32 E-value=68 Score=25.32 Aligned_cols=62 Identities=10% Similarity=0.161 Sum_probs=42.8
Q ss_pred CCeEEEEeccceeEeecccCcC-cH--HHHHHHHHhHHhcC--CCCCCCeEecCcHHHHHHHHHHHhcc
Q 039601 48 KGHFVVHTTDQIRFVIPLKYLE-NN--IIRELFRIAEDEFG--MPGSGPITLPCDAIVMKYVVSLIQKH 111 (150)
Q Consensus 48 kG~~~VyVGe~~RfvVp~~yLn-hP--~F~~LL~~aeEEfG--~~~~G~L~IPC~~~~Fe~vl~~i~~~ 111 (150)
...+.+.|| +.||.+...-|. +| .|..|... ..++. .+.+|.+-|-.|...|++||..++.+
T Consensus 11 ~~~V~LNVG-G~~F~Tt~sTL~r~PdS~L~~lfs~-~~~~~~~~De~geyFIDRDP~~F~~ILnyLRtG 77 (202)
T 3drx_A 11 SKWVRLNVG-GTYFLTTRQTLCRDPKSFLYRLCQA-DPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHG 77 (202)
T ss_dssp CCEEEEEET-TEEEEEETTGGGSCTTSSTHHHHSC-CCC----BCTTCCEEECSCSTTHHHHHHHHHHS
T ss_pred CCEEEEEEC-CEEEEEeHHHHhCCCcchHHHHhcC-ccccCcccCCCccEEecCChHHHHHHHHHhcCC
Confidence 456667788 678988877664 34 55565421 11232 23579999999999999999999865
No 17
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=23.89 E-value=33 Score=25.78 Aligned_cols=51 Identities=20% Similarity=0.291 Sum_probs=38.6
Q ss_pred CcCcHHHHHHHHHhHHhcCCC-CCCCeEecCcHHHHHHHHHHHhccchHHHHHHH
Q 039601 67 YLENNIIRELFRIAEDEFGMP-GSGPITLPCDAIVMKYVVSLIQKHVAKDVEKAI 120 (150)
Q Consensus 67 yLnhP~F~~LL~~aeEEfG~~-~~G~L~IPC~~~~Fe~vl~~i~~~~~~d~~~a~ 120 (150)
.|+.|+=.+.|..++++|.=. ..|+ +=....|++-..++..+...|+++++
T Consensus 4 ~l~~~l~~~~l~~~~~~y~~e~~~~~---~~~~~~F~ya~~Lv~S~~~~~~~~gI 55 (152)
T 1pc2_A 4 VLNELVSVEDLLKFEKKFQSEKAAGS---VSKSTQFEYAWCLVRSKYNDDIRKGI 55 (152)
T ss_dssp CCSCSCCHHHHHHHHHHHHHHHHTTC---CCHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHhCcCCHHHHHHHHHHHHHHHccCC---CcHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 566677778888888877532 2344 34478899999999999999999986
No 18
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=23.10 E-value=57 Score=19.48 Aligned_cols=21 Identities=33% Similarity=0.702 Sum_probs=15.4
Q ss_pred HHHHHHHHhHHhcCCCCCCCe
Q 039601 72 IIRELFRIAEDEFGMPGSGPI 92 (150)
Q Consensus 72 ~F~~LL~~aeEEfG~~~~G~L 92 (150)
-..+|.+.-||+||.+...|.
T Consensus 17 E~~eLvk~leekfGVsaaa~v 37 (40)
T 1dd4_C 17 ELAELVKKLEDKFGVTAAAPV 37 (40)
T ss_dssp HHHHHHHHHHHHTCCCSCC--
T ss_pred HHHHHHHHHHHHHCCCccccc
Confidence 346899999999999865443
No 19
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=22.32 E-value=49 Score=18.62 Aligned_cols=13 Identities=46% Similarity=0.830 Sum_probs=10.8
Q ss_pred HHHHHHHhHHhcC
Q 039601 73 IRELFRIAEDEFG 85 (150)
Q Consensus 73 F~~LL~~aeEEfG 85 (150)
..+|.+.-||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4678888999998
No 20
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=21.96 E-value=22 Score=24.92 Aligned_cols=20 Identities=20% Similarity=0.399 Sum_probs=18.7
Q ss_pred cCcCcHHHHHHHHHhHHhcC
Q 039601 66 KYLENNIIRELFRIAEDEFG 85 (150)
Q Consensus 66 ~yLnhP~F~~LL~~aeEEfG 85 (150)
.||+.-.|++++.|+.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 59999999999999999985
No 21
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=21.85 E-value=1.5e+02 Score=20.72 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=37.8
Q ss_pred cceeEeecccCc--CcHHHHHHHHHhHHhcCCCCCCCeEec-CcHHHHHHHHHHHhcc
Q 039601 57 DQIRFVIPLKYL--ENNIIRELFRIAEDEFGMPGSGPITLP-CDAIVMKYVVSLIQKH 111 (150)
Q Consensus 57 e~~RfvVp~~yL--nhP~F~~LL~~aeEEfG~~~~G~L~IP-C~~~~Fe~vl~~i~~~ 111 (150)
++++|-+.-..| ..|.|+.++...-.|-. .....|.|+ .+...|+.++..+-.+
T Consensus 55 ~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e-~~~~~I~l~~v~~~~f~~lL~fiYtg 111 (144)
T 2ppi_A 55 DGEEIPVQKNILAAASPYIRTKLNYNPPKDD-GSTYKIELEGISVMVMREILDYIFSG 111 (144)
T ss_dssp TTEEEEECHHHHHHHCHHHHHHHHHCC------CCCEEECCSSCHHHHHHHHHHHTTS
T ss_pred CCEEEehHHHHHHHcCHHHHHHHcCCCcccc-CCCcEEEeCCCCHHHHHHHHHHHhCC
Confidence 456777776666 48999999975321100 135678888 4899999999999865
No 22
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=21.81 E-value=17 Score=24.23 Aligned_cols=20 Identities=25% Similarity=0.566 Sum_probs=18.3
Q ss_pred cCcCcHHHHHHHHHhHHhcC
Q 039601 66 KYLENNIIRELFRIAEDEFG 85 (150)
Q Consensus 66 ~yLnhP~F~~LL~~aeEEfG 85 (150)
.||+.-.|++++.|+.+||-
T Consensus 32 ~yLsdedF~~vFgmsr~eF~ 51 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEFG 51 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHHH
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 59999999999999999984
No 23
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=21.51 E-value=6.2 Score=32.32 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=18.1
Q ss_pred cCCCCCeEEEEeccceeEeecccCcCcHHH
Q 039601 44 STAEKGHFVVHTTDQIRFVIPLKYLENNII 73 (150)
Q Consensus 44 ~~vpkG~~~VyVGe~~RfvVp~~yLnhP~F 73 (150)
..+|+||+|+.-.= +=.-+=..+|+||.|
T Consensus 208 l~AP~GHLP~~~~l-rGv~l~~~ll~hpa~ 236 (238)
T 1z3x_A 208 LSAPRGHLPLTNQL-RGVQVLNALLNHPAW 236 (238)
T ss_dssp TTSCTTCCSCCCCT-TCSHHHHHHHTCGGG
T ss_pred CCCCCCCCCcCccc-ccHHHHHHHHcCccc
Confidence 46899999986421 111133457888876
No 24
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=21.29 E-value=63 Score=23.21 Aligned_cols=54 Identities=7% Similarity=0.175 Sum_probs=37.9
Q ss_pred EEeccceeEeecccCcCcHHHHHHHHHhHHhcCCC--------C-CCCeEecCcHHHHHHHHHHHh
Q 039601 53 VHTTDQIRFVIPLKYLENNIIRELFRIAEDEFGMP--------G-SGPITLPCDAIVMKYVVSLIQ 109 (150)
Q Consensus 53 VyVGe~~RfvVp~~yLnhP~F~~LL~~aeEEfG~~--------~-~G~L~IPC~~~~Fe~vl~~i~ 109 (150)
-|.||-+||.|. ++.++-|.+|-.+...-||+. . +-.|+|.=+. .|+..+++..
T Consensus 20 ~f~ge~~rF~Vs--~~~~~tweel~~mvk~~f~L~~~~IkY~DEenD~V~i~Sq~-E~eEAlkva~ 82 (101)
T 1wj6_A 20 TFKNEIQSFLVS--DPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQG-EYEEALKMAV 82 (101)
T ss_dssp EETTEEEEEEES--CTTTSCHHHHHHHHHHHHCCSSBCCEEECTTSCEECCCSHH-HHHHHHHHHH
T ss_pred EEcCCeeEEEec--CCCCCCHHHHHHHHHHHcCCCceEEEEecCCCCEEEEecHH-HHHHHHHHhc
Confidence 456899999875 899999999999999999963 2 3345565443 4444444433
No 25
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=20.10 E-value=21 Score=23.76 Aligned_cols=20 Identities=20% Similarity=0.404 Sum_probs=18.7
Q ss_pred cCcCcHHHHHHHHHhHHhcC
Q 039601 66 KYLENNIIRELFRIAEDEFG 85 (150)
Q Consensus 66 ~yLnhP~F~~LL~~aeEEfG 85 (150)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 31 IYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGSCHHHHHHHTSSCHHHHT
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 59999999999999999985
Done!