BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039602
(2132 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3ED78|C3H7_ARATH Zinc finger CCCH domain-containing protein 7 OS=Arabidopsis thaliana
GN=At1g21570 PE=1 SV=1
Length = 470
Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust.
Identities = 281/471 (59%), Positives = 342/471 (72%), Gaps = 11/471 (2%)
Query: 1654 RFSLVWTLNSMQSSKSDDHFLYRGKVLPSLFPWKRTLYWRRFVQDPVSISNNSSLSAISR 1713
+FSLVWT N Q H + ++P L PWKR YWRR + + N SSL+ ISR
Sbjct: 8 KFSLVWTQNDPQPRMPIAH-MRNQNIVPQLVPWKRVTYWRRLMNSVSAFRNGSSLN-ISR 65
Query: 1714 KLLLLRKRDTVYTRSNHGFSLRKYKVLSVGGSSLKWSKSIENRSKKVNEEATLAVAAVEK 1773
KL ++RKR T+YTRS +G+SLRK KVLSVGGS LKWSKSIE S+K NEEATLAVAA K
Sbjct: 66 KLSMMRKRHTIYTRSTNGYSLRKSKVLSVGGSHLKWSKSIERDSRKANEEATLAVAAYSK 125
Query: 1774 KRQENGAESFASETKIRIRSCRERIFRIGSVRYKMDSSRRTLQRISDDSSPCAAGPTLEK 1833
K E + + T R RER+FR GS+RYKMDSSRRTLQRISD SPC+ K
Sbjct: 126 KESEKQSGQNNTSTASRNHLARERVFRFGSLRYKMDSSRRTLQRISDVDSPCSGPSENGK 185
Query: 1834 NAKKSYIPRRLVIGNDEYVRIGNGNQLIRDPKRRARVLASEKVRWSLHTARLRLARKRKY 1893
K+ +IP+RLVIGN+EYVR GNGNQL+RDPK+R RVLA+EKVRWSLH ARLRLA+K+KY
Sbjct: 186 GVKRPFIPKRLVIGNEEYVRFGNGNQLVRDPKKRTRVLANEKVRWSLHNARLRLAKKKKY 245
Query: 1894 CQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCSNSDCKLTHKVIPERMPDCSYFL 1953
CQFFTRFGKCNKD+GKCPY+HDPSKIAVCTKFL GLC+N++CKLTHKVIPERMPDCSY+L
Sbjct: 246 CQFFTRFGKCNKDDGKCPYVHDPSKIAVCTKFLNGLCANANCKLTHKVIPERMPDCSYYL 305
Query: 1954 QGLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHSYVCPTFKATGSCALGAKC 2013
QGLC N+ CPYRHVHVNP A C+GFLKGYC++GDECRKKHSY CP F+ATGSC+ G KC
Sbjct: 306 QGLCNNEACPYRHVHVNPIAPICDGFLKGYCSEGDECRKKHSYNCPVFEATGSCSQGLKC 365
Query: 2014 RLHHPKSRSNGKKSRRSRKP--KNTHGRYFGSMLVEDSESQTAMSERPTVQNNGNLFVEG 2071
+LHHPK++S G+K +R+ +P KN RYF S+ SES+ + R + + +F
Sbjct: 366 KLHHPKNQSKGRKRKRTNEPSQKNARRRYFSSLHNILSESEPMVFNRRST--DSEVFGME 423
Query: 2072 KLVDYIGLDVSDKEAGETNDALHELLDFNDSGASELQLDDLDELIKPIRIM 2122
L D+I L ++ EAG+ ND +DS + L + LI P+ +M
Sbjct: 424 SL-DFITLGTAEYEAGDDNDPATVQSISSDSES----LISIYNLITPVALM 469
>sp|Q8IXZ2|ZC3H3_HUMAN Zinc finger CCCH domain-containing protein 3 OS=Homo sapiens GN=ZC3H3
PE=1 SV=3
Length = 948
Score = 182 bits (462), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 124/201 (61%), Gaps = 6/201 (2%)
Query: 1868 ARVLASEKVRWSL---HTARLRLARKRKYCQFFTRFGKCNKDNGKCPYIHDPSKIAVCTK 1924
+R LAS V+ SL AR R ++++YC ++ RFG+CN+ +CPYIHDP K+AVCT+
Sbjct: 644 SRSLASRAVQRSLAIIRQARQRREKRKEYCMYYNRFGRCNRGE-RCPYIHDPEKVAVCTR 702
Query: 1925 FLKGLCSNSD--CKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFLKG 1982
F++G C +D C +H V E+MP CSYFL+G+C+N NCPY HV+V+ A C FLKG
Sbjct: 703 FVRGTCKKTDGTCPFSHHVSKEKMPVCSYFLKGICSNSNCPYSHVYVSRKAEVCSDFLKG 762
Query: 1983 YCADGDECRKKHSYVCPTFKATGSCALGAKCRLHHPKSRSNGKKSRRSRKPKNTHGRYFG 2042
YC G +C+KKH+ +CP F G+C GA+C+L H + + +++ S P +
Sbjct: 763 YCPLGAKCKKKHTLLCPDFARRGACPRGAQCQLLHRTQKRHSRRAATSPAPGPSDATARS 822
Query: 2043 SMLVEDSESQTAMSERPTVQN 2063
+ + + S+RPT Q
Sbjct: 823 RVSASHGPRKPSASQRPTRQT 843
>sp|Q8CHP0|ZC3H3_MOUSE Zinc finger CCCH domain-containing protein 3 OS=Mus musculus GN=Zc3h3
PE=2 SV=1
Length = 950
Score = 177 bits (448), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 111/165 (67%), Gaps = 6/165 (3%)
Query: 1868 ARVLASEKVRWSL---HTARLRLARKRKYCQFFTRFGKCNKDNGKCPYIHDPSKIAVCTK 1924
+R LAS ++ SL A+ + +KR+YC ++ RFG+CN+ CPYIHDP K+AVCT+
Sbjct: 639 SRSLASRAIQRSLAIIRQAKQKKEKKREYCMYYNRFGRCNRGEC-CPYIHDPEKVAVCTR 697
Query: 1925 FLKGLCSNSD--CKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFLKG 1982
F++G C +D C +H V E+MP CSYFL+G+C+N NCPY HV+V+ A C FLKG
Sbjct: 698 FVRGTCKKTDGSCPFSHHVSKEKMPVCSYFLKGICSNSNCPYSHVYVSRKAEVCSDFLKG 757
Query: 1983 YCADGDECRKKHSYVCPTFKATGSCALGAKCRLHHPKSRSNGKKS 2027
YC G +C+KKH+ +CP F G C G++C+L H + +G+++
Sbjct: 758 YCPLGAKCKKKHTLLCPDFARRGICPRGSQCQLLHRNQKRHGRRT 802
>sp|P0C945|Y1158_ARATH Uncharacterized protein At1g21580 OS=Arabidopsis thaliana
GN=At1g21580 PE=1 SV=1
Length = 1696
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/277 (35%), Positives = 145/277 (52%), Gaps = 30/277 (10%)
Query: 1356 TRPRTWHRTESSSASPAPGNKSL---LPPQNQLPKKVAKYQSMSYIRKGNSLVRKPA--- 1409
T+ TWHR +S S K L L Q + PK A+ + SY+RKGNSL+RKP+
Sbjct: 1417 TKRHTWHRKSDASPSSFVAAKPLSSTLSTQQKFPKVTAQSNN-SYVRKGNSLLRKPSHGS 1475
Query: 1410 PVAAVSQISHGLTSSVYWLNSSGIGESKKTRGSEGGADVVDPPSFLR-GVNAPLERPRTP 1468
P AA+ G+ S LN + + K+ GS DV + S ++ G A LER P
Sbjct: 1476 PGAAL-----GIPPSAIQLNHFTVED--KSTGSSNMVDVDNASSLVKTGEIATLERQSKP 1528
Query: 1469 PL-PVVAKVPNHATSSTGDYTSSPVAEPLPNGCSETKSDTQKLMEINDELNFSNAALNIS 1527
P +K+ N +S+G S + L G E+ D+ + E NF ++ +
Sbjct: 1529 PSDSSTSKLSNAIATSSGKCALSYSTDHLTTGLPESIMDSA----TSGEANFPHSGGDTL 1584
Query: 1528 KT--PVNQTGSVNGLESQGELNDGTLCTSNVKRITYLKRKSNQLIAASNGCSLSVQNPDK 1585
KT + QTG + + Q + N L +SN+KR+ Y+KRK+NQL+AAS+ + + +
Sbjct: 1585 KTSDTLIQTGYAS--DCQQKRNPSDLDSSNLKRMVYVKRKANQLVAASD-----IHDVSQ 1637
Query: 1586 TQSTASDGYYKRRKNQLIRTPLESHINQTVSLADGSF 1622
Q +SDGY+KR KNQL+R ES NQ++SL D +
Sbjct: 1638 NQIPSSDGYFKRSKNQLVRNS-ESRCNQSISLPDDAL 1673
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 95/145 (65%), Gaps = 10/145 (6%)
Query: 266 KREFYASDAGRYGNNRGSREHSYEYNRTPRKQVQKKSALLRIQKPY-YRNRDDGEL---- 320
K ++Y S+ +Y + RG RE S E NRTPRKQVQKKSALLR++ P Y+N + E
Sbjct: 284 KDDYYHSEIEQYFD-RGRREASNELNRTPRKQVQKKSALLRLETPRSYKNSRENEWSRQH 342
Query: 321 -HHSN--YEIKSGSFRGKDQVVFSDRDVGEHEQREGSPVELDVSFKSNSLVAKAIVATSS 377
HH+ S S+RGK+ + SDR + E +QR SPV+LD+SFKSN LVAK + + +S
Sbjct: 343 NHHNGNGKRFNSNSYRGKEHLGHSDRGLVE-KQRGRSPVDLDISFKSNVLVAKPVASPTS 401
Query: 378 SAIVSDANLTPKKGNTRKIVMSNKD 402
+ I S A++TP+ R+ ++S+K+
Sbjct: 402 AGIRSGASVTPRSIKARRALLSDKN 426
>sp|O74823|YBJC_SCHPO Zinc finger CCCH domain-containing protein C337.12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC337.12 PE=4 SV=3
Length = 376
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 4/127 (3%)
Query: 1893 YCQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCSNS-DCKLTHKVIPERMPDCSY 1951
YC+++ G C K C ++H+P++ +C KFL G C+ + DC L+H++ P R+P C Y
Sbjct: 207 YCRYYNANGICGK-GAACRFVHEPTRKTICPKFLNGRCNKAEDCNLSHELDPRRIPACRY 265
Query: 1952 FLQGLCTNKNCPYRHVHVNPNASTCEGFLK-GYCADGDECRKKHSYVCPTFKATGSCALG 2010
FL G C N NC Y H+H + NA C F K G+C G C+ +H C + GSC
Sbjct: 266 FLLGKCNNPNCRYVHIHYSENAPICFEFAKYGFCELGTSCKNQHILQCTDYAMFGSCN-N 324
Query: 2011 AKCRLHH 2017
+C L+H
Sbjct: 325 PQCSLYH 331
>sp|A6NMK7|CPS4L_HUMAN Putative cleavage and polyadenylation specificity factor subunit
4-like protein OS=Homo sapiens GN=CPSF4L PE=2 SV=3
Length = 179
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 69/128 (53%), Gaps = 10/128 (7%)
Query: 1894 CQFFTRFGKCNKDNGK-CPYIHDP-SKIAVCTKFLKGLCSNSD-CKLTHKVIPERMPDCS 1950
C FFT+ G C K GK CP+ HD K+ VC +L+GLC D CK H+ RMP+C
Sbjct: 41 CNFFTK-GLCEK--GKLCPFRHDRGEKMVVCKHWLRGLCKKGDHCKFLHQYDLTRMPECY 97
Query: 1951 YFLQ-GLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKH--SYVCPTFKATGSC 2007
++ + G C+NK C + HV + C + +G+C DG C+ +H +C + G C
Sbjct: 98 FYSKFGDCSNKECSFLHVKPAFKSQDCPWYDQGFCKDGPLCKYRHVPRIMCLNY-LVGFC 156
Query: 2008 ALGAKCRL 2015
G KC+
Sbjct: 157 PEGPKCQF 164
>sp|Q5FVR7|CPSF4_RAT Cleavage and polyadenylation specificity factor subunit 4 OS=Rattus
norvegicus GN=Cpsf4 PE=2 SV=1
Length = 243
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 8/131 (6%)
Query: 1894 CQFFTRFGKCNKDNGKCPYIH-DPSKIAVCTKFLKGLCSNSD-CKLTHKVIPERMPDCSY 1951
C+FF + C K G CP+ H K VC +L+GLC D C+ H+ +MP+C +
Sbjct: 41 CEFFLK-AACGK-GGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYF 98
Query: 1952 FLQ-GLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHS--YVCPTFKATGSCA 2008
+ + G C+NK CP+ H+ C + +G+C G CR +H+ +C + G C
Sbjct: 99 YSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY-LVGFCP 157
Query: 2009 LGAKCRLHHPK 2019
G C+ HP+
Sbjct: 158 EGPSCKFMHPR 168
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 34/107 (31%)
Query: 1890 KRKYCQFFTRFGKCNKDNGKCPYIH-DPSKIAVCTKFLKGLCSNSDCKLTHKVIPERMPD 1948
K C F+++FG+C+ N +CP++H DP ++ D
Sbjct: 92 KMPECYFYSKFGECS--NKECPFLHIDPE--------------------------SKIKD 123
Query: 1949 CSYFLQGLCTNKN-CPYRHVHVNPNASTCEGFLKGYCADGDECRKKH 1994
C ++ +G C + C +RH C +L G+C +G C+ H
Sbjct: 124 CPWYDRGFCKHGPLCRHRHTR----RVICVNYLVGFCPEGPSCKFMH 166
>sp|O19137|CPSF4_BOVIN Cleavage and polyadenylation specificity factor subunit 4 OS=Bos
taurus GN=CPSF4 PE=2 SV=1
Length = 243
Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 8/131 (6%)
Query: 1894 CQFFTRFGKCNKDNGKCPYIH-DPSKIAVCTKFLKGLCSNSD-CKLTHKVIPERMPDCSY 1951
C+FF + C K G CP+ H K VC +L+GLC D C+ H+ +MP+C +
Sbjct: 41 CEFFLK-AACGK-GGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYF 98
Query: 1952 FLQ-GLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHS--YVCPTFKATGSCA 2008
+ + G C+NK CP+ H+ C + +G+C G CR +H+ +C + G C
Sbjct: 99 YSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY-LVGFCP 157
Query: 2009 LGAKCRLHHPK 2019
G C+ HP+
Sbjct: 158 EGPSCKFMHPR 168
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 34/107 (31%)
Query: 1890 KRKYCQFFTRFGKCNKDNGKCPYIH-DPSKIAVCTKFLKGLCSNSDCKLTHKVIPERMPD 1948
K C F+++FG+C+ N +CP++H DP ++ D
Sbjct: 92 KMPECYFYSKFGECS--NKECPFLHIDPE--------------------------SKIKD 123
Query: 1949 CSYFLQGLCTNKN-CPYRHVHVNPNASTCEGFLKGYCADGDECRKKH 1994
C ++ +G C + C +RH C +L G+C +G C+ H
Sbjct: 124 CPWYDRGFCKHGPLCRHRHTR----RVICVNYLVGFCPEGPSCKFMH 166
>sp|Q6DJP7|CPSF4_XENLA Cleavage and polyadenylation specificity factor subunit 4 OS=Xenopus
laevis GN=cpsf4 PE=2 SV=1
Length = 269
Score = 85.5 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 8/131 (6%)
Query: 1894 CQFFTRFGKCNKDNGKCPYIH-DPSKIAVCTKFLKGLCSNSD-CKLTHKVIPERMPDCSY 1951
C+FF + C K G CP+ H K VC +L+GLC D C+ H+ +MP+C +
Sbjct: 41 CEFFLK-SACGK-GGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYF 98
Query: 1952 FLQ-GLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHS--YVCPTFKATGSCA 2008
+ + G C+NK CP+ H+ C + +G+C G CR +H+ +C + G C
Sbjct: 99 YSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY-LVGFCI 157
Query: 2009 LGAKCRLHHPK 2019
G C+ HP+
Sbjct: 158 EGPNCKFMHPR 168
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 1890 KRKYCQFFTRFGKCNKDNGKCPYIH-DP-SKIAVCTKFLKGLCSNSD-CKLTHKVIPERM 1946
K C F+++FG+C+ N +CP++H DP SKI C + +G C + C+ H R
Sbjct: 92 KMPECYFYSKFGECS--NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHT----RR 145
Query: 1947 PDCSYFLQGLCTN-KNCPYRH 1966
C +L G C NC + H
Sbjct: 146 VICVNYLVGFCIEGPNCKFMH 166
>sp|Q66KE3|CPSF4_XENTR Cleavage and polyadenylation specificity factor subunit 4 OS=Xenopus
tropicalis GN=cpsf4 PE=2 SV=1
Length = 269
Score = 84.7 bits (208), Expect = 7e-15, Method: Composition-based stats.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 8/131 (6%)
Query: 1894 CQFFTRFGKCNKDNGKCPYIH-DPSKIAVCTKFLKGLCSNSD-CKLTHKVIPERMPDCSY 1951
C+FF + C K G CP+ H K VC +L+GLC D C+ H+ +MP+C +
Sbjct: 41 CEFFLK-SACGK-GGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYF 98
Query: 1952 FLQ-GLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHS--YVCPTFKATGSCA 2008
+ + G C+NK CP+ H+ C + +G+C G CR +H+ +C + G C
Sbjct: 99 YSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY-LVGFCI 157
Query: 2009 LGAKCRLHHPK 2019
G C+ HP+
Sbjct: 158 EGPNCKFMHPR 168
Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 1890 KRKYCQFFTRFGKCNKDNGKCPYIH-DP-SKIAVCTKFLKGLCSNSD-CKLTHKVIPERM 1946
K C F+++FG+C+ N +CP++H DP SKI C + +G C + C+ H R
Sbjct: 92 KMPECYFYSKFGECS--NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHT----RR 145
Query: 1947 PDCSYFLQGLCTN-KNCPYRH 1966
C +L G C NC + H
Sbjct: 146 VICVNYLVGFCIEGPNCKFMH 166
>sp|O95639|CPSF4_HUMAN Cleavage and polyadenylation specificity factor subunit 4 OS=Homo
sapiens GN=CPSF4 PE=1 SV=1
Length = 269
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 8/131 (6%)
Query: 1894 CQFFTRFGKCNKDNGKCPYIH-DPSKIAVCTKFLKGLCSNSD-CKLTHKVIPERMPDCSY 1951
C+FF + C K G CP+ H K VC +L+GLC D C+ H+ +MP+C +
Sbjct: 41 CEFFLK-AACGK-GGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYF 98
Query: 1952 FLQ-GLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHS--YVCPTFKATGSCA 2008
+ + G C+NK CP+ H+ C + +G+C G CR +H+ +C + G C
Sbjct: 99 YSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY-LVGFCP 157
Query: 2009 LGAKCRLHHPK 2019
G C+ HP+
Sbjct: 158 EGPSCKFMHPR 168
>sp|Q6C922|YTH1_YARLI mRNA 3'-end-processing protein YTH1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=YTH1 PE=3 SV=1
Length = 193
Score = 78.2 bits (191), Expect = 7e-13, Method: Composition-based stats.
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 8/136 (5%)
Query: 1891 RKYCQFFTRFGKCNKDNGKCPYIH-DPSKI--AVCTKFLKGLCSNS-DCKLTHKVIPERM 1946
R C+ F +F C + N CP H P+ + VC +L+GLC +C+ H+ ++M
Sbjct: 27 RPLCRGFLQFDGCPRGN-SCPDKHLAPTFLNKIVCKHWLRGLCKKGLNCEFLHEYNLQKM 85
Query: 1947 PDCSYFLQ-GLCTNK-NCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHSYVCP-TFKA 2003
P+C ++++ G CT +C Y H+ C + KG+C G EC +KH P
Sbjct: 86 PECQFYVKNGFCTQSPDCQYLHIDPASKIPVCFNYEKGFCKMGPECSRKHIRRMPCELYM 145
Query: 2004 TGSCALGAKCRLHHPK 2019
TG C G C HPK
Sbjct: 146 TGFCPKGRVCEFAHPK 161
>sp|Q758T3|YTH1_ASHGO mRNA 3'-end-processing protein YTH1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=YTH1
PE=3 SV=1
Length = 209
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 48/139 (34%), Positives = 68/139 (48%), Gaps = 13/139 (9%)
Query: 1891 RKYCQFF-TRFGKCNKDNGK-CPYIHD----PSKIAVCTKFLKGLCSNSD-CKLTHKVIP 1943
R CQ++ ++ G + NG CP H +KI VC +L+GLC +D C+ H+
Sbjct: 31 RPVCQYYNSKEGASSCPNGTLCPNKHVLPIFQNKI-VCKHWLRGLCKKNDQCEYLHEYNL 89
Query: 1944 ERMPDCSYFLQ-GLCTNK-NCPYRHVHVNPNASTCEGFLKGYCADGDECRKKH--SYVCP 1999
+MP+C +F + G CT C Y H+ CE + G+C G C KH +CP
Sbjct: 90 RKMPECVFFTKNGYCTQSPECQYLHIDPTSKVQQCEDYRMGFCPLGTACPCKHVKKIICP 149
Query: 2000 TFKATGSCALGAKCRLHHP 2018
+ TG C LG C HP
Sbjct: 150 KY-VTGFCPLGRDCDWEHP 167
Score = 41.2 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
Query: 1889 RKRKYCQFFTRFGKCNKDNGKCPYIH-DP-SKIAVCTKFLKGLC---SNSDCKLTHKVIP 1943
RK C FFT+ G C + + +C Y+H DP SK+ C + G C + CK K+I
Sbjct: 90 RKMPECVFFTKNGYCTQ-SPECQYLHIDPTSKVQQCEDYRMGFCPLGTACPCKHVKKII- 147
Query: 1944 ERMPDCSYFLQGLCT-NKNCPYRH 1966
C ++ G C ++C + H
Sbjct: 148 -----CPKYVTGFCPLGRDCDWEH 166
>sp|Q6BTT1|YTH1_DEBHA mRNA 3'-end-processing protein YTH1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=YTH1 PE=3 SV=2
Length = 223
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 80/172 (46%), Gaps = 14/172 (8%)
Query: 1858 NQLIRDPKRRARVLASEKVRWSLHTARLRLARKRKYCQFFTRFGKCNK-DNGK-CPYIHD 1915
NQ+I P R + E + L L R CQF+ N NG CP+ H
Sbjct: 5 NQVIH-PDTRNKRFKFEP--FLLKEYNFGLDPDRPVCQFYNPSNPNNSCPNGSLCPHKHV 61
Query: 1916 PSKIA---VCTKFLKGLCSNSD-CKLTHKVIPERMPDCSYFLQ-GLCTN-KNCPYRHVHV 1969
S + VC +L+GLC +D C+ H+ +MP+C ++ + G CT C Y HV
Sbjct: 62 SSMYSNKIVCKHWLRGLCKKNDHCEFLHEYNLRKMPECLFYSKNGFCTQTPECLYLHVDP 121
Query: 1970 NPNASTCEGFLKGYCADGDECRKKH--SYVCPTFKATGSCALGAKCRLHHPK 2019
C + KG+C DG +C +H +CP + TG C GA+C HP+
Sbjct: 122 QSKIPPCSSYEKGFCPDGPKCANRHIRKIMCPLW-LTGFCPKGAECDYTHPR 172
>sp|Q6CKU1|YTH1_KLULA mRNA 3'-end-processing protein YTH1 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=YTH1 PE=3 SV=1
Length = 210
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 74/149 (49%), Gaps = 13/149 (8%)
Query: 1891 RKYCQFF-TRFGKCNKDNG-KCPYIH----DPSKIAVCTKFLKGLCSNSD-CKLTHKVIP 1943
R CQ++ +R G + NG +CP H +KI VC +L+GLC +D C+ H+
Sbjct: 31 RPVCQYYNSREGIKSCPNGARCPNKHVLPIFQNKI-VCKHWLRGLCKKNDQCEYLHEYNL 89
Query: 1944 ERMPDCSYFLQ-GLCTNK-NCPYRHVHVNPNASTCEGFLKGYCADGDECRKKH--SYVCP 1999
+MP+C +F + G CT C Y HV CE + G+C G C KKH +CP
Sbjct: 90 RKMPECVFFTKNGYCTQSPECQYLHVDHKSQLEECEDYNMGFCPSGPACTKKHVKKVLCP 149
Query: 2000 TFKATGSCALGAKCRLHHPKSRSNGKKSR 2028
+ G C LG C HPK + + S+
Sbjct: 150 RY-LVGFCPLGKDCDWSHPKFKVPSEHSK 177
>sp|Q4P384|YTH1_USTMA mRNA 3'-end-processing protein YTH1 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=YTH1 PE=3 SV=1
Length = 366
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 7/130 (5%)
Query: 1913 IHDPSKIAVCTKFLKGLCSNSD-CKLTHKVIPERMPDCSYFLQ-GLC-TNKNCPYRHVHV 1969
+ DP+K VC +L+GLC D C H+ R+P+C ++ G C + +C Y HV
Sbjct: 101 LRDPNKRTVCKHWLRGLCKKDDQCDYLHEYDMRRIPECRFYATFGFCNSGDDCLYLHVDP 160
Query: 1970 NPNASTCEGFLKGYCADGDECRKKH--SYVCPTFKATGSCALGAKCRLHHPKSRSNGKKS 2027
CE + +G+C G C KKH CP + A G C G C H KS + +
Sbjct: 161 AIKRRECERYNRGFCPKGPLCTKKHVRRVACPLYLA-GFCPEGLDCPRGHVKS-TPASSA 218
Query: 2028 RRSRKPKNTH 2037
RS P TH
Sbjct: 219 SRSNSPIQTH 228
Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 1889 RKRKYCQFFTRFGKCNKDNGKCPYIH-DPS-KIAVCTKFLKGLCSNSD-CKLTHKVIPER 1945
R+ C+F+ FG CN + C Y+H DP+ K C ++ +G C C H R
Sbjct: 133 RRIPECRFYATFGFCNSGD-DCLYLHVDPAIKRRECERYNRGFCPKGPLCTKKH----VR 187
Query: 1946 MPDCSYFLQGLCTNK-NCPYRHVHVNPNAST 1975
C +L G C +CP HV P +S
Sbjct: 188 RVACPLYLAGFCPEGLDCPRGHVKSTPASSA 218
>sp|Q6FTL0|YTH1_CANGA mRNA 3'-end-processing protein YTH1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=YTH1 PE=3 SV=1
Length = 209
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 1891 RKYCQFFT-RFGKCNKDNGK-CPYIHD----PSKIAVCTKFLKGLCS-NSDCKLTHKVIP 1943
R C+ F + G + NG CP H +KI VC +L+GLC N +C+ H+
Sbjct: 32 RPVCEDFNYKIGPSSCPNGVFCPKKHVLGIFQNKI-VCKHWLRGLCKKNDNCEYLHEYNL 90
Query: 1944 ERMPDCSYFLQ-GLCTNK-NCPYRHVHVNPNASTCEGFLKGYCADGDECRKKH--SYVCP 1999
+MP+C ++ + G CT C Y H+ CE + G+C G C K+H +C
Sbjct: 91 RKMPECVFYAKNGFCTQSPECQYLHIDPLSKVPPCEDYEMGFCPKGSACEKRHIKKVLCQ 150
Query: 2000 TFKATGSCALGAK-CRLHHP 2018
+ G C LG + C + HP
Sbjct: 151 RY-INGFCPLGRRECDMEHP 169
>sp|Q59T36|YTH1_CANAL mRNA 3'-end-processing protein YTH1 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=YTH1 PE=3 SV=1
Length = 215
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 17/146 (11%)
Query: 1887 LARKRKYCQFFTRFGKCNKDN-----GKCPYIHDPSKIA---VCTKFLKGLCSNSD-CKL 1937
L R CQF+ N DN CP H + + VC +L+GLC D C+
Sbjct: 31 LDPDRPVCQFYNPL---NPDNSCPQGNNCPNKHVSAMYSNKIVCKHWLRGLCKKGDHCEF 87
Query: 1938 THKVIPERMPDCSYFLQ-GLCTNKN-CPYRHVHVNPNASTCEGFLKGYCADGDECRKKH- 1994
H+ +MP+C ++ + G CT + C Y HV C + +G+C++G C+ +H
Sbjct: 88 LHEYNLRKMPECLFYSKNGYCTQTSECLYLHVDPQSKIPECLNYNQGFCSEGPNCKNRHV 147
Query: 1995 -SYVCPTFKATGSCALGAKCRLHHPK 2019
+CP + G C G +C HPK
Sbjct: 148 RRVLCPLY-LYGFCPKGPECEFTHPK 172
>sp|Q06102|YTH1_YEAST mRNA 3'-end-processing protein YTH1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YTH1 PE=1 SV=1
Length = 208
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 14/141 (9%)
Query: 1891 RKYCQFF-TRFGKCNKDNGK-CPYIHD----PSKIAVCTKFLKGLCSNSD-CKLTHKVIP 1943
R C+F+ +R G + G CP H +KI VC +L+GLC +D C+ H+
Sbjct: 31 RPICEFYNSREGPKSCPRGPLCPKKHVLPIFQNKI-VCRHWLRGLCKKNDQCEYLHEYNL 89
Query: 1944 ERMPDCSYFLQ-GLCTNK-NCPYRHVHVNPNASTCEGFLKGYCADGDECRKKH--SYVCP 1999
+MP+C +F + G CT +C Y H+ CE + G+C G C ++H C
Sbjct: 90 RKMPECVFFSKNGYCTQSPDCQYLHIDPASKIPKCENYEMGFCPLGSSCPRRHIKKVFCQ 149
Query: 2000 TFKATGSCALGA-KCRLHHPK 2019
+ TG C LG +C + HP+
Sbjct: 150 RY-MTGFCPLGKDECDMEHPQ 169
>sp|Q9UTD1|YTH1_SCHPO mRNA 3'-end-processing protein yth1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=yth1 PE=3 SV=1
Length = 170
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 13/131 (9%)
Query: 1897 FTRFGKCNKDNGKCPYIHDPSKIA--VCTKFLKGLCSNSD-CKLTHKVIPERMPDCSYFL 1953
F R N NG+ SK+ VC +L+GLC + C H+ ++MP C ++
Sbjct: 31 FGRSALLNSGNGR----DSGSKMGSVVCKHWLRGLCKKGEQCDFLHEYNLKKMPPCHFYA 86
Query: 1954 Q-GLCTN-KNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKH---SYVCPTFKATGSCA 2008
+ G C+N + C Y H+ + C + G+C G CR KH CP + A G C
Sbjct: 87 ERGWCSNGEECLYLHLDPSKQVGVCAWYNMGFCPLGPICRGKHVRKPRPCPKYLA-GFCP 145
Query: 2009 LGAKCRLHHPK 2019
LG C HPK
Sbjct: 146 LGPNCPDAHPK 156
>sp|A9LNK9|CPSF_ARATH Cleavage and polyadenylation specificity factor CPSF30 OS=Arabidopsis
thaliana GN=CPSF30 PE=1 SV=1
Length = 631
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 1921 VCTKFLKGLCSNSD-CKLTHKVIPERMPDCSYF-LQGLCTNKNCPYRHVHVNPNASTCEG 1978
VC +L+GLC D C H+ RMP C +F L G C ++C Y+H N + C
Sbjct: 65 VCRHWLRGLCMKGDACGFLHQFDKARMPICRFFRLYGECREQDCVYKHT--NEDIKECNM 122
Query: 1979 FLKGYCADGDECRKKHS 1995
+ G+C +G +CR +H+
Sbjct: 123 YKLGFCPNGPDCRYRHA 139
Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 1894 CQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCSNS-DCKLTH 1939
C+FF +G+C + + C Y H I C + G C N DC+ H
Sbjct: 94 CRFFRLYGECREQD--CVYKHTNEDIKECNMYKLGFCPNGPDCRYRH 138
>sp|Q5BGN2|YTH1_EMENI mRNA 3'-end-processing protein yth1 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=yth1 PE=3 SV=1
Length = 254
Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 1921 VCTKFLKGLCSNS-DCKLTHKVIPERMPDCSYFLQ-GLCTN-KNCPYRHVHVNPNASTCE 1977
VC FLKGLC C+ H+ RMP+C F + G C N +C Y+HV CE
Sbjct: 91 VCKHFLKGLCKKGMKCEYLHEYNLRRMPECQSFSRSGYCPNGDDCLYQHVREQARLPPCE 150
Query: 1978 GFLKGYCADGDECRKKH--SYVCPTFKATGSCALGAKCRLHHPKSRSNGKK 2026
+ +G+C G C K+H +CP + A G C G C HP+ N K
Sbjct: 151 HYDQGFCPLGPLCAKRHVRRRLCPYYVA-GFCPEGPNCANAHPRWSENLPK 200
>sp|Q4WKD9|YTH1_ASPFU mRNA 3'-end-processing protein yth1 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=yth1
PE=3 SV=1
Length = 254
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 1921 VCTKFLKGLCSNS-DCKLTHKVIPERMPDCSYFLQ-GLCTN-KNCPYRHVHVNPNASTCE 1977
VC FLKGLC C+ H+ RMP+C F + G C N +C Y+HV CE
Sbjct: 91 VCKHFLKGLCKKGLKCEYLHEYNLRRMPECQSFSRSGYCPNGDDCLYQHVREQARLPPCE 150
Query: 1978 GFLKGYCADGDECRKKH--SYVCPTFKATGSCALGAKCRLHHPKSRSNGKK 2026
+ +G+C G C K+H +C + A G C G C HP+ N K
Sbjct: 151 NYDQGFCELGPLCSKRHVRRRLCKYYLA-GFCPEGKACPDAHPRWSENLPK 200
>sp|Q7SGR2|YTH1_NEUCR mRNA 3'-end-processing protein yth-1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=yth-1 PE=3 SV=1
Length = 317
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 1921 VCTKFLKGLCSNSD-CKLTHKVIPERMPDCSYFLQ-GLCTNKN-CPYRHVHVNPNASTCE 1977
VC +L+GLC + C+ H+ +MP+C++F++ G C+N + C Y H+ C
Sbjct: 98 VCKHWLRGLCKKGESCEFLHEYNLRKMPECNFFVRNGYCSNGDECLYLHIDPLSRLPPCP 157
Query: 1978 GFLKGYCADGDECRKKH--SYVCPTFKATGSCALGAKCRL-HHPK 2019
+ +G+C G C KKH +C + A G C G C+ HP+
Sbjct: 158 HYERGFCPLGPRCDKKHFRRKLCLYYLA-GFCPDGKGCKEGAHPR 201
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 1894 CQFFTRFGKCNKDNGKCPYIHDPS--KIAVCTKFLK-GLCSNSD-CKLTHKVIPERMPDC 1949
C+ + R G C K C ++H+ + K+ C F++ G CSN D C H R+P C
Sbjct: 99 CKHWLR-GLCKKGE-SCEFLHEYNLRKMPECNFFVRNGYCSNGDECLYLHIDPLSRLPPC 156
Query: 1950 SYFLQGLCT-NKNCPYRHVHVNPNASTCEGFLKGYCADGDECRK 1992
++ +G C C +H C +L G+C DG C++
Sbjct: 157 PHYERGFCPLGPRCDKKHFR----RKLCLYYLAGFCPDGKGCKE 196
Score = 38.1 bits (87), Expect = 0.81, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 1889 RKRKYCQFFTRFGKCNKDNGKCPYIH-DP-SKIAVCTKFLKGLCS-NSDCKLTHKVIPER 1945
RK C FF R G C+ + +C Y+H DP S++ C + +G C C H R
Sbjct: 122 RKMPECNFFVRNGYCSNGD-ECLYLHIDPLSRLPPCPHYERGFCPLGPRCDKKHF----R 176
Query: 1946 MPDCSYFLQGLCTN-KNC 1962
C Y+L G C + K C
Sbjct: 177 RKLCLYYLAGFCPDGKGC 194
>sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp.
japonica GN=Os06g0677700 PE=2 SV=1
Length = 665
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 1921 VCTKFLKGLCSNSD-CKLTHKVIPERMPDCSYFLQ-GLCTNKNCPYRHVHVNPNASTCEG 1978
VC +L+GLC + C H+ RMP C +F G C +C Y+H + + C
Sbjct: 63 VCRHWLRGLCMKGEACGFLHQFDKARMPVCRFFRDFGECREPDCAYKHSYDD--VKECNM 120
Query: 1979 FLKGYCADGDECRKKH 1994
+ G+C +G CR KH
Sbjct: 121 YKMGFCPNGPNCRYKH 136
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 1894 CQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCSNS-DCKLTH 1939
C+FF FG+C + + C Y H + C + G C N +C+ H
Sbjct: 92 CRFFRDFGECREPD--CAYKHSYDDVKECNMYKMGFCPNGPNCRYKH 136
>sp|Q4IPA4|YTH1_GIBZE mRNA 3'-end-processing protein YTH1 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=YTH1 PE=3 SV=2
Length = 255
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 1921 VCTKFLKGLCSNSD-CKLTHKVIPERMPDCSYFLQ-GLCTNKN-CPYRHVHVNPNASTCE 1977
VC +L+GLC + C+ H+ +MP+C++F++ G C+N + C Y H+ C
Sbjct: 78 VCKHWLRGLCKKGEHCEFLHEYNLRKMPECNFFMRNGYCSNGDECLYLHIDPQSRLPPCP 137
Query: 1978 GFLKGYCADGDECRKKH--SYVCPTFKATGSCALGAKCRL-HHPK 2019
+ G+C G C KKH +C F G C G C+ HPK
Sbjct: 138 HYDMGFCPLGPNCSKKHVRRKLC-VFYLAGFCPDGPDCKEGAHPK 181
>sp|P0CS64|YTH1_CRYNJ mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=YTH1 PE=3 SV=1
Length = 332
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 1918 KIAVCTKFLKGLCSNSD-CKLTHKVIPERMPDCSYFL-QGLCT-NKNCPYRHVHVNPNAS 1974
K+ VC +L+ LC D C+ TH MP C +F+ QG C C Y H
Sbjct: 95 KLTVCKHYLRNLCKMGDNCEYTHDFNLRTMPVCIWFVKQGKCELGGECLY--FHPRDRRV 152
Query: 1975 TCEGFLKGYCADGDECRKKH--SYVCPTFKATGSCALGAKCRLHHP 2018
C + +G+C G C +KH +C + A G C G C+L HP
Sbjct: 153 ECPDYNRGFCVLGPNCPRKHIRRRLCDAY-AAGFCPDGKDCKLAHP 197
Score = 41.2 bits (95), Expect = 0.094, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 24/84 (28%)
Query: 1962 CPYRHV------------------HVNPNASTCEGFLKGYCADGDECRKKHSY------V 1997
CPYRH + C+ +L+ C GD C H + V
Sbjct: 67 CPYRHTTPSQLNFKPPPPLPAHPREREKKLTVCKHYLRNLCKMGDNCEYTHDFNLRTMPV 126
Query: 1998 CPTFKATGSCALGAKCRLHHPKSR 2021
C F G C LG +C HP+ R
Sbjct: 127 CIWFVKQGKCELGGECLYFHPRDR 150
>sp|P0CS65|YTH1_CRYNB mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=YTH1 PE=3 SV=1
Length = 332
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 1918 KIAVCTKFLKGLCSNSD-CKLTHKVIPERMPDCSYFL-QGLCT-NKNCPYRHVHVNPNAS 1974
K+ VC +L+ LC D C+ TH MP C +F+ QG C C Y H
Sbjct: 95 KLTVCKHYLRNLCKMGDNCEYTHDFNLRTMPVCIWFVKQGKCELGGECLY--FHPRDRRV 152
Query: 1975 TCEGFLKGYCADGDECRKKH--SYVCPTFKATGSCALGAKCRLHHP 2018
C + +G+C G C +KH +C + A G C G C+L HP
Sbjct: 153 ECPDYNRGFCVLGPNCPRKHIRRRLCDAY-AAGFCPDGKDCKLAHP 197
Score = 41.2 bits (95), Expect = 0.094, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 24/84 (28%)
Query: 1962 CPYRHV------------------HVNPNASTCEGFLKGYCADGDECRKKHSY------V 1997
CPYRH + C+ +L+ C GD C H + V
Sbjct: 67 CPYRHTTPSQLNFKPPPPLPAHPREREKKLTVCKHYLRNLCKMGDNCEYTHDFNLRTMPV 126
Query: 1998 CPTFKATGSCALGAKCRLHHPKSR 2021
C F G C LG +C HP+ R
Sbjct: 127 CIWFVKQGKCELGGECLYFHPRDR 150
>sp|Q9LTS7|C3H65_ARATH Zinc finger CCCH domain-containing protein 65 OS=Arabidopsis thaliana
GN=EMB1789 PE=2 SV=1
Length = 675
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 1911 PYIHDPSKIAVCTKFLKGLCSNSD-CKLTHKVIPE-RMPDCSYFLQGLCTN-KNCPYRHV 1967
P P I C +LKG C D CK +H IPE + C YF C +CP+ H
Sbjct: 345 PVAPKPKPIKYCRHYLKGRCHEGDKCKFSHDTIPETKCSPCCYFATQSCMKGDDCPFDH- 403
Query: 1968 HVNPNASTCEGFL-KGYCADGDECRKKH 1994
+ + C F+ KG+C GD C H
Sbjct: 404 --DLSKYPCNNFITKGFCYRGDSCLFSH 429
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 1976 CEGFLKGYCADGDECRKKHSYVCPT------FKATGSCALGAKCRLHHPKSR 2021
C +LKG C +GD+C+ H + T + AT SC G C H S+
Sbjct: 356 CRHYLKGRCHEGDKCKFSHDTIPETKCSPCCYFATQSCMKGDDCPFDHDLSK 407
>sp|Q2URI6|YTH1_ASPOR mRNA 3'-end-processing protein yth1 OS=Aspergillus oryzae (strain
ATCC 42149 / RIB 40) GN=yth1 PE=3 SV=1
Length = 255
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 1921 VCTKFLKGLCSNS-DCKLTHKVIPERMPDCSYFLQ-GLCTN-KNCPYRHVHVNPNASTCE 1977
VC FLKGLC C+ H+ RMP+C F + G C N +C Y+HV CE
Sbjct: 91 VCKHFLKGLCKKGLKCEYLHEYNLRRMPECQSFSRSGYCPNGDDCLYQHVREQARLPPCE 150
Query: 1978 GFLKGYCADGDECRKKH--SYVCPTFKATGSCALGAKC 2013
+ +G+C G C K+H +C + A G C G C
Sbjct: 151 HYDRGFCPLGPLCAKRHVRRRLCQYYLA-GFCPEGKGC 187
>sp|Q8BYK8|ZC3H6_MOUSE Zinc finger CCCH domain-containing protein 6 OS=Mus musculus GN=Zc3h6
PE=2 SV=2
Length = 1177
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 1949 CSYFLQGLCTN-KNCPYRH-VHVNPNASTCEGFLKGYCADGDECRKKHS-YVCPTFKATG 2005
C YFL+G C +C + H + C+ +L+GYC G+ C HS + C + +
Sbjct: 276 CKYFLEGRCIKGDHCKFNHDAELEKKKEVCKYYLQGYCTKGENCIYMHSEFPCKFYHSGA 335
Query: 2006 SCALGAKCRLHH 2017
C G KC+ H
Sbjct: 336 KCYQGDKCKFSH 347
>sp|P61129|ZC3H6_HUMAN Zinc finger CCCH domain-containing protein 6 OS=Homo sapiens GN=ZC3H6
PE=2 SV=2
Length = 1189
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 1921 VCTKFLKGLCSNSD-CKLTHKV-IPERMPDCSYFLQGLCT-NKNCPYRHVHVNPNASTCE 1977
+C FL+G C D CK H + +R C ++LQG CT +NC Y H N C+
Sbjct: 277 ICKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMH-----NEFPCK 331
Query: 1978 GFLKGY-CADGDECRKKH 1994
+ G C GD C+ H
Sbjct: 332 FYHSGAKCYQGDNCKFSH 349
Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 1949 CSYFLQGLCTNKN-CPYRH-VHVNPNASTCEGFLKGYCADGDECRKKHS-YVCPTFKATG 2005
C YFL+G C + C + H + C+ +L+GYC G+ C H+ + C + +
Sbjct: 278 CKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMHNEFPCKFYHSGA 337
Query: 2006 SCALGAKCRLHH 2017
C G C+ H
Sbjct: 338 KCYQGDNCKFSH 349
>sp|Q657B3|C3H7_ORYSJ Zinc finger CCCH domain-containing protein 7 OS=Oryza sativa subsp.
japonica GN=Os01g0572100 PE=2 SV=1
Length = 698
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 1936 KLTHKVIPERMPDCSYFLQGLCTNKN-CPYRHVHVNP--NASTCEGFLKGYCADGDECRK 1992
KL + P+ + C ++L G C N C + H P + C + +G C GD+C
Sbjct: 422 KLQPVIKPKVVKVCHFYLHGKCQQGNLCKFSH-DTTPLTKSKPCTHYARGSCLKGDDCPY 480
Query: 1993 KHS---YVCPTFKATGSCALGAKCRLHHPKSRSNGKKSRRSRK 2032
H Y C F G C G KC+ H + G + ++K
Sbjct: 481 DHELSKYPCHNFMENGMCIRGDKCKFSHVIPTAEGPSTPDAKK 523
>sp|Q9UPT8|ZC3H4_HUMAN Zinc finger CCCH domain-containing protein 4 OS=Homo sapiens GN=ZC3H4
PE=1 SV=3
Length = 1303
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 1949 CSYFLQGLCT-NKNCPYRH-VHVNPNASTCEGFLKGYCADGDECRKKHS-YVCPTFKATG 2005
C YF++G CT +C + H + + C+ ++ G+CA + C H + C + TG
Sbjct: 396 CKYFVEGRCTWGDHCNFSHDIELPKKRELCKFYITGFCARAENCPYMHGDFPCKLYHTTG 455
Query: 2006 SCALGAKCRLHH 2017
+C G C H
Sbjct: 456 NCINGDDCMFSH 467
>sp|Q6ZPZ3|ZC3H4_MOUSE Zinc finger CCCH domain-containing protein 4 OS=Mus musculus GN=Zc3h4
PE=1 SV=2
Length = 1304
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 1949 CSYFLQGLCT-NKNCPYRH-VHVNPNASTCEGFLKGYCADGDECRKKHS-YVCPTFKATG 2005
C YF++G CT +C + H + + C+ ++ G+CA + C H + C + TG
Sbjct: 395 CKYFVEGRCTWGDHCNFSHDIELPKKRELCKFYITGFCARAENCPYMHGDFPCKLYHTTG 454
Query: 2006 SCALGAKCRLHH 2017
+C G C H
Sbjct: 455 NCINGDDCMFSH 466
>sp|Q9QXP6|MKRN1_MOUSE E3 ubiquitin-protein ligase makorin-1 OS=Mus musculus GN=Mkrn1 PE=2
SV=1
Length = 481
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 1949 CSYFLQGLCTN-KNCPYRH-VHVNPNASTCEGFLKGYCADGDECRKKHS 1995
C YF+ G+C NC Y H + +P C+ F +GYC GD CR +HS
Sbjct: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYGVVCKYFQRGYCVYGDRCRYEHS 109
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 1975 TCEGFLKGYCADGDECRKKHSY-------VCPTFKATGSCALGAKCRLHHPK 2019
TC F+ G C +GD CR H VC F+ G C G +CR H K
Sbjct: 60 TCRYFMHGVCKEGDNCRYSHDLSDSPYGVVCKYFQ-RGYCVYGDRCRYEHSK 110
>sp|Q9UHC7|MKRN1_HUMAN E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens GN=MKRN1 PE=1
SV=3
Length = 482
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 1949 CSYFLQGLCTN-KNCPYRH-VHVNPNASTCEGFLKGYCADGDECRKKHS 1995
C YF+ G+C NC Y H + +P + C+ F +GYC GD CR +HS
Sbjct: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHS 109
Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 1975 TCEGFLKGYCADGDECRKKH-------SYVCPTFKATGSCALGAKCRLHHPK 2019
TC F+ G C +GD CR H S VC F+ G C G +CR H K
Sbjct: 60 TCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQ-RGYCIYGDRCRYEHSK 110
>sp|Q8BQZ5|CPSF4_MOUSE Cleavage and polyadenylation specificity factor subunit 4 OS=Mus
musculus GN=Cpsf4 PE=2 SV=1
Length = 211
Score = 45.1 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 1915 DPSKIAVCTKFLKGLCSNSD-CKLTHKVIPERMPDCSYFLQGLCTNKN-CPYRHVHVNPN 1972
D S AVC FLK C C H + E+ C ++L+GLC + C + H +
Sbjct: 34 DKSGAAVCEFFLKAACGKGGMCPFRH-ISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTK 92
Query: 1973 ASTCEGFLKGYCADGDECRKKHS--YVCPTFKATGSCALGAKCRLHHPK 2019
C + K G CR +H+ +C + G C G C+ HP+
Sbjct: 93 MPECYFYSKF----GPLCRHRHTRRVICVNY-LVGFCPEGPSCKFMHPR 136
>sp|Q94AD9|C3H3_ARATH Zinc finger CCCH domain-containing protein 3 OS=Arabidopsis thaliana
GN=At1g04990 PE=2 SV=1
Length = 404
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 51/130 (39%), Gaps = 24/130 (18%)
Query: 1894 CQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCSNSDCKLTHKVIPERM--PDCSY 1951
CQF+ R G C + C Y H P+ + D + +PER+ PDC Y
Sbjct: 53 CQFYLRTGLCGYGS-SCRYNH-PTHLP------------QDVAYYKEELPERIGQPDCEY 98
Query: 1952 FLQ-GLC-TNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHSYVCPTFKATGSCAL 2009
FL+ G C C Y H A + G E CP + TG+C
Sbjct: 99 FLKTGACKYGPTCKYHHPKDRNGAQPVMFNVIGLPMRLGE------KPCPYYLRTGTCRF 152
Query: 2010 GAKCRLHHPK 2019
G C+ HHP+
Sbjct: 153 GVACKFHHPQ 162
Score = 38.1 bits (87), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 21/76 (27%)
Query: 1971 PNASTCEGFLK-GYCADGDECRKKH--------SYV------------CPTFKATGSCAL 2009
P C+ +L+ G C G CR H +Y C F TG+C
Sbjct: 48 PGERDCQFYLRTGLCGYGSSCRYNHPTHLPQDVAYYKEELPERIGQPDCEYFLKTGACKY 107
Query: 2010 GAKCRLHHPKSRSNGK 2025
G C+ HHPK R+ +
Sbjct: 108 GPTCKYHHPKDRNGAQ 123
>sp|Q8JFF3|MKRN1_SERQU Probable E3 ubiquitin-protein ligase makorin-1 OS=Seriola
quinqueradiata GN=mkrn1 PE=2 SV=1
Length = 435
Score = 43.9 bits (102), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 1949 CSYFLQGLCT-NKNCPYRHVHVN--PNASTCEGFLKGYCADGDECRKKHS 1995
C YF+ GLC NC Y H N P A C+ F KG C GD CR +H
Sbjct: 24 CRYFMHGLCKEGDNCRYSHDLTNSKPAAMICKFFQKGNCVFGDRCRFEHC 73
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 1975 TCEGFLKGYCADGDECRKKH--------SYVCPTFKATGSCALGAKCRLHHPKSRSN 2023
TC F+ G C +GD CR H + +C F+ G+C G +CR H K N
Sbjct: 23 TCRYFMHGLCKEGDNCRYSHDLTNSKPAAMICKFFQ-KGNCVFGDRCRFEHCKPAKN 78
>sp|Q9JJ48|ZC3H8_MOUSE Zinc finger CCCH domain-containing protein 8 OS=Mus musculus GN=Zc3h8
PE=1 SV=2
Length = 305
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 1949 CSYFLQGLCTNKN-CPYRH-VHVNPNASTCEGFLKGYCADGDECRKKHS-YVCPTFKATG 2005
C YFL+ C + C + H + C+ +++GYC G+ C HS Y C +
Sbjct: 211 CKYFLERKCIKGDQCKFDHDAEIEKKKEMCKYYVQGYCTKGENCLYLHSEYPCKFYHTGT 270
Query: 2006 SCALGAKCRLHH 2017
C G C H
Sbjct: 271 KCYQGDHCNFSH 282
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 1921 VCTKFLKGLCSNSD-CKLTHKV-IPERMPDCSYFLQGLCTN-KNCPYRHVHVNPNASTCE 1977
VC FL+ C D CK H I ++ C Y++QG CT +NC Y H C+
Sbjct: 210 VCKYFLERKCIKGDQCKFDHDAEIEKKKEMCKYYVQGYCTKGENCLYLHSEY-----PCK 264
Query: 1978 GFLKG-YCADGDECRKKHS 1995
+ G C GD C H+
Sbjct: 265 FYHTGTKCYQGDHCNFSHA 283
>sp|Q8N5P1|ZC3H8_HUMAN Zinc finger CCCH domain-containing protein 8 OS=Homo sapiens GN=ZC3H8
PE=1 SV=2
Length = 291
Score = 43.1 bits (100), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 1949 CSYFLQGLCTNKN-CPYRH-VHVNPNASTCEGFLKGYCADGDECRKKHS-YVCPTFKATG 2005
C YFL+ C + C + H + C+ +++GYC G+ C H+ Y C +
Sbjct: 197 CKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLHNEYPCKFYHTGT 256
Query: 2006 SCALGAKCRLHH 2017
C G C+ H
Sbjct: 257 KCYQGEYCKFSH 268
>sp|O48772|C3H26_ARATH Zinc finger CCCH domain-containing protein 26 OS=Arabidopsis thaliana
GN=ZFN2 PE=2 SV=1
Length = 453
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 53/150 (35%), Gaps = 34/150 (22%)
Query: 1894 CQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCSNSDCKLTHKVIPERM--PDCSY 1951
CQFF R G+C N C Y H T +G+ D +PER+ PDC
Sbjct: 50 CQFFLRTGQCGYGN-SCRYNHP------LTNLPQGIIYYRD------QLPERVGQPDCE- 95
Query: 1952 FLQGLC-TNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHSYVCPTFKATGSCALG 2010
G C C Y H A + G ++ CP + TG C G
Sbjct: 96 --TGACKYGPTCKYHHPKDRNGAGPVLFNVLGLPM------RQGEKPCPYYMQTGLCRFG 147
Query: 2011 AKCRLHHPKSRSNGKKSRRSRKPKNTHGRY 2040
C+ HHP S +P N H Y
Sbjct: 148 VACKFHHPHPHS---------QPSNGHSAY 168
>sp|Q9TT91|MKRN1_MACEU E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii GN=MKRN1
PE=2 SV=1
Length = 478
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 1949 CSYFLQGLCTN-KNCPYRH-VHVNPNASTCEGFLKGYCADGDECRKKHS 1995
C YF+ G+C NC Y H + + +A C + +G CA GD CR +H+
Sbjct: 57 CRYFMHGVCKKGNNCRYSHDLSTSQSAMVCRYYQRGCCAYGDRCRYEHT 105
Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 1975 TCEGFLKGYCADGDECRKKH-------SYVCPTFKATGSCALGAKCRLHHPK 2019
TC F+ G C G+ CR H + VC ++ G CA G +CR H K
Sbjct: 56 TCRYFMHGVCKKGNNCRYSHDLSTSQSAMVCRYYQ-RGCCAYGDRCRYEHTK 106
>sp|Q4VBT5|MKRN1_DANRE Probable E3 ubiquitin-protein ligase makorin-1 OS=Danio rerio
GN=mkrn1 PE=2 SV=1
Length = 439
Score = 41.6 bits (96), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 1949 CSYFLQGLCT-NKNCPYRH-VHVNPNASTCEGFLKGYCADGDECRKKHS 1995
C YF+ GLC +NC Y H + C+ F KG CA GD CR +H+
Sbjct: 24 CRYFMHGLCKEGENCRYSHDLSSCKQTMICKFFQKGCCAFGDRCRYEHT 72
Score = 39.7 bits (91), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 1975 TCEGFLKGYCADGDECRKKH-------SYVCPTFKATGSCALGAKCRLHHPK 2019
TC F+ G C +G+ CR H + +C F+ G CA G +CR H K
Sbjct: 23 TCRYFMHGLCKEGENCRYSHDLSSCKQTMICKFFQ-KGCCAFGDRCRYEHTK 73
>sp|Q4SRI6|MKRN1_TETNG Probable E3 ubiquitin-protein ligase makorin-1 OS=Tetraodon
nigroviridis GN=mkrn1 PE=3 SV=1
Length = 372
Score = 41.6 bits (96), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 1949 CSYFLQGLCT-NKNCPYRHVHVN--PNASTCEGFLKGYCADGDECRKKHS 1995
C YF+ GLC NC Y H N P A C+ F KG C G+ CR H
Sbjct: 24 CRYFMHGLCKEGDNCRYSHDLTNSKPAAMICKFFQKGNCVFGERCRFDHC 73
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 1975 TCEGFLKGYCADGDECRKKH--------SYVCPTFKATGSCALGAKCRLHHPKSRSN 2023
TC F+ G C +GD CR H + +C F+ G+C G +CR H K N
Sbjct: 23 TCRYFMHGLCKEGDNCRYSHDLTNSKPAAMICKFFQ-KGNCVFGERCRFDHCKPTKN 78
>sp|Q6NPN3|C3H58_ARATH Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis thaliana
GN=At5g18550 PE=2 SV=1
Length = 465
Score = 41.6 bits (96), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 1940 KVIPERM--PDCSYFLQ-GLC-TNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHS 1995
+ PER PDC Y+L+ G+C C + H N + G L+ G+ +
Sbjct: 46 ETFPERPDEPDCIYYLRTGVCGYGSRCRFNHPR---NRAPVLGGLR--TEAGEFPERMGQ 100
Query: 1996 YVCPTFKATGSCALGAKCRLHHPKSRSNG 2024
VC F TG+C GA C+ HHP+ G
Sbjct: 101 PVCQHFMRTGTCKFGASCKYHHPRQGGGG 129
Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 52/136 (38%), Gaps = 32/136 (23%)
Query: 1894 CQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCSNSDCKLTHKVIPERM--PDCSY 1951
C ++ R G C + +C + H ++ V L GL + PERM P C +
Sbjct: 57 CIYYLRTGVCGYGS-RCRFNHPRNRAPV----LGGL------RTEAGEFPERMGQPVCQH 105
Query: 1952 FLQ-GLCT-NKNCPYRHVH-------VNPNASTCEGFLKGYCADGDECRKKHSYVCPTFK 2002
F++ G C +C Y H V P + GF + C F
Sbjct: 106 FMRTGTCKFGASCKYHHPRQGGGGDSVTPVSLNYMGFP----------LRPGEKECSYFM 155
Query: 2003 ATGSCALGAKCRLHHP 2018
TG C G+ CR HHP
Sbjct: 156 RTGQCKFGSTCRYHHP 171
>sp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana
GN=At2g47850 PE=2 SV=2
Length = 468
Score = 41.6 bits (96), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 1943 PER--MPDCSYFLQ-GLCTNKN-CPYRHVHVNPNASTCEGFLKGYCADGDECRKKHSYVC 1998
PER PDC+Y+++ G+C N C Y H + ++ E ++ A G + C
Sbjct: 43 PERPGAPDCAYYMRTGVCGYGNRCRYNHPR---DRASVEATVR---ATGQYPERFGEPPC 96
Query: 1999 PTFKATGSCALGAKCRLHHPK 2019
+ TG+C GA C+ HHPK
Sbjct: 97 QFYLKTGTCKFGASCKFHHPK 117
>sp|Q5NU14|MKRN1_TAKRU Probable E3 ubiquitin-protein ligase makorin-1 OS=Takifugu rubripes
GN=mkrn1 PE=2 SV=1
Length = 429
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 1949 CSYFLQGLCTN-KNCPYRH--VHVNPNASTCEGFLKGYCADGDECRKKH 1994
C YF+ GLC NC Y H P A C+ F KG C G+ CR +H
Sbjct: 24 CRYFMHGLCKEGDNCRYSHDLTSSKPAAMMCKFFQKGNCVFGERCRFEH 72
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
Query: 1975 TCEGFLKGYCADGDECRKKH--------SYVCPTFKATGSCALGAKCRLHHPK 2019
TC F+ G C +GD CR H + +C F+ G+C G +CR H K
Sbjct: 23 TCRYFMHGLCKEGDNCRYSHDLTSSKPAAMMCKFFQ-KGNCVFGERCRFEHCK 74
>sp|Q9SWF9|ZFNL_PEA Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum
PE=2 SV=1
Length = 417
Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 25/132 (18%)
Query: 1894 CQFFTRFGKCNKDNGKCPYIHDPS-KIAVCTKFLKGLCSNSDCKLTHKVIPERM--PDCS 1950
C ++ R G C + C + H P+ K+A+ T +KG PER+ P+C
Sbjct: 36 CSYYIRTGLC-RFGATCRFNHPPNRKLAIATARMKG------------EFPERLGQPECQ 82
Query: 1951 YFLQ-GLCT-NKNCPYRHVHVNPNASTCEGF-LKGYCADGDECRKKHSYVCPTFKATGSC 2007
Y+L+ G C C + H + + GY +E + + + TG C
Sbjct: 83 YYLKTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPNESERAY------YLRTGQC 136
Query: 2008 ALGAKCRLHHPK 2019
G C+ HHP+
Sbjct: 137 KFGNTCKFHHPQ 148
Score = 40.0 bits (92), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 1947 PDCSYFLQ-GLC-TNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHSYVCPTFKAT 2004
PDCSY+++ GLC C + H PN + G+ + C + T
Sbjct: 34 PDCSYYIRTGLCRFGATCRFNH---PPNRKLAIATAR---MKGEFPERLGQPECQYYLKT 87
Query: 2005 GSCALGAKCRLHHPKSRSN 2023
G+C GA CR HHPK ++
Sbjct: 88 GTCKFGATCRFHHPKDKAG 106
Score = 34.7 bits (78), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 1998 CPTFKATGSCALGAKCRLHHPKSR 2021
C + TG C GA CR HHP+ R
Sbjct: 284 CQFYMKTGDCKFGAVCRFHHPRER 307
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 794,359,220
Number of Sequences: 539616
Number of extensions: 34758807
Number of successful extensions: 84003
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 354
Number of HSP's that attempted gapping in prelim test: 80932
Number of HSP's gapped (non-prelim): 2385
length of query: 2132
length of database: 191,569,459
effective HSP length: 133
effective length of query: 1999
effective length of database: 119,800,531
effective search space: 239481261469
effective search space used: 239481261469
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 69 (31.2 bits)