Query 039602
Match_columns 2132
No_of_seqs 254 out of 1267
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 11:17:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039602.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039602hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1492 C3H1-type Zn-finger pr 99.9 9.6E-23 2.1E-27 221.5 6.9 219 1756-2021 115-336 (377)
2 KOG1040 Polyadenylation factor 99.5 9.7E-15 2.1E-19 168.6 5.2 133 1890-2024 44-187 (325)
3 COG5084 YTH1 Cleavage and poly 99.2 3.1E-11 6.8E-16 137.9 10.6 132 1890-2023 73-237 (285)
4 KOG1040 Polyadenylation factor 99.2 2.1E-11 4.6E-16 141.4 5.5 126 1888-2021 74-206 (325)
5 KOG1492 C3H1-type Zn-finger pr 99.1 5.8E-11 1.3E-15 130.7 3.1 101 1919-2022 206-315 (377)
6 KOG2494 C3H1-type Zn-finger pr 98.9 9.1E-10 2E-14 127.0 4.2 128 1891-2023 37-257 (331)
7 KOG4791 Uncharacterized conser 98.6 2.7E-08 5.8E-13 118.3 5.1 124 1892-2022 4-144 (667)
8 COG5084 YTH1 Cleavage and poly 98.4 3.5E-07 7.5E-12 105.5 7.3 99 1889-1989 102-212 (285)
9 KOG1677 CCCH-type Zn-finger pr 98.4 4E-07 8.6E-12 104.8 6.2 111 1892-2023 87-205 (332)
10 KOG1595 CCCH-type Zn-finger pr 98.3 8.4E-07 1.8E-11 108.0 7.2 131 1890-2024 75-296 (528)
11 KOG2494 C3H1-type Zn-finger pr 98.2 4.6E-07 1E-11 105.2 1.2 102 1919-2021 37-155 (331)
12 KOG1677 CCCH-type Zn-finger pr 97.8 4.2E-05 9.1E-10 88.4 8.0 58 1885-1942 126-202 (332)
13 COG5063 CTH1 CCCH-type Zn-fing 97.6 0.00011 2.4E-09 85.4 7.8 132 1890-2022 114-301 (351)
14 KOG4791 Uncharacterized conser 97.5 2.1E-05 4.7E-10 94.5 0.6 63 1920-1982 4-70 (667)
15 KOG3702 Nuclear polyadenylated 96.9 0.0014 2.9E-08 82.4 7.0 112 1889-2020 542-666 (681)
16 KOG1763 Uncharacterized conser 96.8 0.00025 5.3E-09 82.3 -0.3 29 1887-1917 88-116 (343)
17 PF00642 zf-CCCH: Zinc finger 96.7 0.00047 1E-08 55.1 0.1 26 1890-1916 2-27 (27)
18 COG5063 CTH1 CCCH-type Zn-fing 96.6 0.0029 6.4E-08 74.1 6.0 133 1918-2050 114-301 (351)
19 KOG1595 CCCH-type Zn-finger pr 96.6 0.0015 3.3E-08 80.6 3.8 65 1902-1969 208-292 (528)
20 PF00642 zf-CCCH: Zinc finger 95.9 0.0011 2.4E-08 53.0 -1.5 23 1996-2018 4-26 (27)
21 smart00356 ZnF_C3H1 zinc finge 95.4 0.01 2.2E-07 46.1 2.2 24 1890-1915 3-26 (27)
22 KOG1763 Uncharacterized conser 95.3 0.0035 7.6E-08 73.2 -1.0 27 1917-1943 90-117 (343)
23 KOG3702 Nuclear polyadenylated 95.2 0.029 6.2E-07 71.1 6.3 92 1929-2026 521-652 (681)
24 KOG2333 Uncharacterized conser 95.1 0.013 2.7E-07 72.3 2.6 50 1975-2024 78-145 (614)
25 smart00356 ZnF_C3H1 zinc finge 94.9 0.017 3.7E-07 44.8 2.1 22 1996-2018 5-26 (27)
26 COG5252 Uncharacterized conser 94.7 0.007 1.5E-07 69.1 -0.7 31 1884-1916 78-108 (299)
27 KOG2185 Predicted RNA-processi 90.0 0.15 3.2E-06 62.3 1.7 37 1996-2033 141-179 (486)
28 COG5152 Uncharacterized conser 88.1 0.2 4.3E-06 56.8 0.9 30 1994-2023 140-169 (259)
29 KOG2185 Predicted RNA-processi 87.8 0.3 6.4E-06 59.8 2.1 59 1907-1969 99-164 (486)
30 KOG2333 Uncharacterized conser 87.4 0.3 6.5E-06 60.9 1.9 49 1889-1938 74-135 (614)
31 PF10650 zf-C3H1: Putative zin 82.6 0.78 1.7E-05 37.0 1.6 21 1947-1967 1-22 (23)
32 COG5252 Uncharacterized conser 81.7 0.23 5E-06 57.4 -2.3 26 1917-1942 83-109 (299)
33 PF14608 zf-CCCH_2: Zinc finge 80.7 1.2 2.6E-05 34.0 1.9 19 1997-2018 1-19 (19)
34 PF14608 zf-CCCH_2: Zinc finge 79.4 1.2 2.6E-05 34.0 1.6 19 1893-1915 1-19 (19)
35 KOG1813 Predicted E3 ubiquitin 77.2 0.74 1.6E-05 54.9 -0.1 26 1995-2020 186-211 (313)
36 COG5152 Uncharacterized conser 65.7 2.5 5.4E-05 48.4 0.7 23 1974-1996 142-165 (259)
37 PF10650 zf-C3H1: Putative zin 65.5 3.4 7.3E-05 33.5 1.2 19 1921-1939 2-21 (23)
38 KOG1813 Predicted E3 ubiquitin 52.9 4.7 0.0001 48.5 0.1 26 1974-1999 187-213 (313)
39 KOG2202 U2 snRNP splicing fact 48.3 8 0.00017 45.9 1.0 28 1888-1916 12-39 (260)
40 KOG1039 Predicted E3 ubiquitin 41.9 9.8 0.00021 46.8 0.5 23 1892-1916 9-31 (344)
41 KOG1039 Predicted E3 ubiquitin 39.8 26 0.00057 43.3 3.6 27 1996-2022 250-277 (344)
42 KOG0153 Predicted RNA-binding 34.1 20 0.00044 44.2 1.4 23 1974-1996 162-184 (377)
43 COG5175 MOT2 Transcriptional r 33.3 16 0.00035 44.7 0.5 24 1921-1944 204-228 (480)
44 KOG0153 Predicted RNA-binding 29.9 26 0.00056 43.4 1.4 28 1887-1916 157-184 (377)
No 1
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=99.87 E-value=9.6e-23 Score=221.50 Aligned_cols=219 Identities=32% Similarity=0.693 Sum_probs=166.9
Q ss_pred hhcccchHHHHHHHHHH-HHhhhcCCcccccccccccccceeEEEEEccEEEEEcCCCCeeEecCCCCCCCCCCCccccc
Q 039602 1756 RSKKVNEEATLAVAAVE-KKRQENGAESFASETKIRIRSCRERIFRIGSVRYKMDSSRRTLQRISDDSSPCAAGPTLEKN 1834 (2132)
Q Consensus 1756 ~s~k~~e~atla~a~~e-kkr~~~~a~~~~~~t~~R~~s~r~R~v~I~GVrF~vd~sG~KLvRvsd~~s~~sa~~~s~~~ 1834 (2132)
+.+|+|-|.-.|-.|.| |--++.|.++ |-+.+-.+.|.|+|..|..-.+..|....-
T Consensus 115 qarkanlesyraklekeyktlaenkiqq-------rlsdgtkqlvtidglqyitgvsdtkwlefv--------------- 172 (377)
T KOG1492|consen 115 QARKANLESYRAKLEKEYKTLAENKIQQ-------RLSDGTKQLVTIDGLQYITGVSDTKWLEFV--------------- 172 (377)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHH-------HhccCceeEEEecceeeecccccchhhhhh---------------
Confidence 45567777777777777 6666666552 333456778999999997544333221111
Q ss_pred ccccCCCceeeeCCeeEEEecCCcccccChhhhhHHhhcccchhhhhhhhhccccCccccccccccccccCCCCCCCCCC
Q 039602 1835 AKKSYIPRRLVIGNDEYVRIGNGNQLIRDPKRRARVLASEKVRWSLHTARLRLARKRKYCQFFTRFGKCNKDNGKCPYIH 1914 (2132)
Q Consensus 1835 a~~~~tPkRv~IgGvtYvRsKnGNlLvR~pkrR~r~vas~kvrwSl~t~R~rl~KKtq~CkfFlRTGkCkKgG~~CpFiH 1914 (2132)
+....-|+-+.-++..| +| . ..|.+.. -.-.+...+|+||..-|.|-+ |..|+|.|
T Consensus 173 sakgqcpkylywnnksy-------ll-k----kkrflke-----------vgnspsavycryynangicgk-gaacrfvh 228 (377)
T KOG1492|consen 173 SAKGQCPKYLYWNNKSY-------LL-K----KKRFLKE-----------VGNSPSAVYCRYYNANGICGK-GAACRFVH 228 (377)
T ss_pred hhcCCCCceeEEcChhH-------HH-H----HHHHHHH-----------hCCCCceeEEEEecCCCcccC-Cceeeeec
Confidence 11112344444443333 22 0 1111111 012356789999999999999 89999999
Q ss_pred CCCccccccccccCccCCC-CcccccccCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCccCcccc-ccCCCCCCcccC
Q 039602 1915 DPSKIAVCTKFLKGLCSNS-DCKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFL-KGYCADGDECRK 1992 (2132)
Q Consensus 1915 DPsKvAICKfFLRG~CsnG-SCpFSHepspeRmPvCrfFLnG~CsNdnCPYsHVK~spKapVCrdFl-qGyCpKGdkCpF 1992 (2132)
.|.+..+|+.||+|.|.+. +|.++|+..+.+.|.|+||+-|.|.+++|+|.|+.-...+|+|-.|. .|+|..|..|+.
T Consensus 229 eptrkticpkflngrcnkaedcnlsheldprripacryfllgkcnnpncryvhihysenapicfefakygfcelgtsckn 308 (377)
T KOG1492|consen 229 EPTRKTICPKFLNGRCNKAEDCNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIHYSENAPICFEFAKYGFCELGTSCKN 308 (377)
T ss_pred cccccccChHHhcCccCchhcCCcccccCccccchhhhhhhccCCCCCceEEEEeecCCCceeeeehhcceecccccccc
Confidence 9999999999999999986 99999999999999999999999999999999999989999999996 699999999999
Q ss_pred CCCccccCCCCcCcCCCCCCCCCCCCCCC
Q 039602 1993 KHSYVCPTFKATGSCALGAKCRLHHPKSR 2021 (2132)
Q Consensus 1993 RHv~eCPDFa~TGsCprGdkCKFaHpere 2021 (2132)
.|...|.+|+..|.|.+ +.|.+.|+--.
T Consensus 309 qhilqctdyamfgscnn-pqcslyhgavs 336 (377)
T KOG1492|consen 309 QHILQCTDYAMFGSCNN-PQCSLYHGAVS 336 (377)
T ss_pred ceeeeecchhhhcCCCC-Ccceeecceec
Confidence 99999999999999997 89999997543
No 2
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=99.50 E-value=9.7e-15 Score=168.62 Aligned_cols=133 Identities=32% Similarity=0.822 Sum_probs=117.3
Q ss_pred Ccccccccccc-ccccCCCCCCCCCCCC----CccccccccccCccCCC-CcccccccCCCCCCCCcccc-cCCCCC-CC
Q 039602 1890 KRKYCQFFTRF-GKCNKDNGKCPYIHDP----SKIAVCTKFLKGLCSNS-DCKLTHKVIPERMPDCSYFL-QGLCTN-KN 1961 (2132)
Q Consensus 1890 Ktq~CkfFlRT-GkCkKgG~~CpFiHDP----sKvAICKfFLRG~CsnG-SCpFSHepspeRmPvCrfFL-nG~CsN-dn 1961 (2132)
....|.++.+. -.|.+ |..|+..|.. .+..+|++||+|.|..| .|.|+|++...+|+.|.||. .|.|.+ .+
T Consensus 44 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vcK~~l~glC~kgD~C~Flhe~~~~k~rec~ff~~~g~c~~~~~ 122 (325)
T KOG1040|consen 44 GRATCEFNESREKPCER-GPICPKSHNDVSDSRGKVVCKHWLRGLCKKGDQCEFLHEYDLTKMRECKFFSLFGECTNGKD 122 (325)
T ss_pred ccchhcccccCCCCccC-CCCCccccCCccccCCceeehhhhhhhhhccCcCcchhhhhhcccccccccccccccccccC
Confidence 35667777632 35777 8999999954 46789999999999998 99999999888999999887 799999 99
Q ss_pred CCCCCCCCCCCCccCccccccCCCCCCcccCCCC--ccccCCCCcCcCCCCCC-CCCCCCCCCCCC
Q 039602 1962 CPYRHVHVNPNASTCEGFLKGYCADGDECRKKHS--YVCPTFKATGSCALGAK-CRLHHPKSRSNG 2024 (2132)
Q Consensus 1962 CPYsHVK~spKapVCrdFlqGyCpKGdkCpFRHv--~eCPDFa~TGsCprGdk-CKFaHperesr~ 2024 (2132)
|+|.|..+......|.+|..|+|..|+.|+++|. ..|+.|. .|.|+.|.. |.+.|+......
T Consensus 123 c~y~h~dpqt~~k~c~~~~~g~c~~g~~c~~~h~~~~~c~~y~-~gfC~~g~q~c~~~hp~~~~~~ 187 (325)
T KOG1040|consen 123 CPYLHGDPQTAIKKCKWYKEGFCRGGPSCKKRHERKVLCPPYN-AGFCPKGPQRCDMLHPEFQQPP 187 (325)
T ss_pred CcccCCChhhhhhccchhhhccCCCcchhhhhhhcccCCCchh-hhhccCCCCcccccCCCCCCCh
Confidence 9999999888889999999999999999999997 6899999 999999998 999999887654
No 3
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=99.22 E-value=3.1e-11 Score=137.88 Aligned_cols=132 Identities=27% Similarity=0.576 Sum_probs=115.1
Q ss_pred CccccccccccccccCCCCCCCCCCCC---CccccccccccCccCCC-CcccccccCCCC--CCCCccc-ccCCCCC-CC
Q 039602 1890 KRKYCQFFTRFGKCNKDNGKCPYIHDP---SKIAVCTKFLKGLCSNS-DCKLTHKVIPER--MPDCSYF-LQGLCTN-KN 1961 (2132)
Q Consensus 1890 Ktq~CkfFlRTGkCkKgG~~CpFiHDP---sKvAICKfFLRG~CsnG-SCpFSHepspeR--mPvCrfF-LnG~CsN-dn 1961 (2132)
....|.+|..-+-|-. ...|++.|.. ....+|++|+.|.|..+ .|.|+|.++..+ ++.|++| +.|.|.. ..
T Consensus 73 n~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~s~V~c~~~~~g~c~s~~~c~~lh~~d~~~s~~~~c~~Fs~~G~cs~g~~ 151 (285)
T COG5084 73 NTVACISRNFNSIRGS-RLSTPNNHVNPVLSSSVVCKFFLRGLCKSGFSCEFLHEYDLRSSQGPPCRSFSLKGSCSSGPS 151 (285)
T ss_pred cccccccccccCCccc-cccCCccccCccccCCcccchhccccCcCCCccccccCCCcccccCCCcccccccceeccCCC
Confidence 4567888886455544 5689999975 67789999999999988 999999998877 9999999 6999999 99
Q ss_pred CCCCCCCCCCCCccCcccc---ccCCCCCCcccCCCCc--------cccCCCCcCcCCCCCC--------------CCCC
Q 039602 1962 CPYRHVHVNPNASTCEGFL---KGYCADGDECRKKHSY--------VCPTFKATGSCALGAK--------------CRLH 2016 (2132)
Q Consensus 1962 CPYsHVK~spKapVCrdFl---qGyCpKGdkCpFRHv~--------eCPDFa~TGsCprGdk--------------CKFa 2016 (2132)
|.|.|+.+...+..|.+|. +|+|+.|..|++.|.. .|.+|. .+.|+.|.. |++.
T Consensus 152 c~~~h~dp~~~~~~~~~~~~~~~~f~p~g~~c~~~H~~~~~~~~~~p~~~y~-~~fsP~g~~~~~~~~~~~~~~~~~~~~ 230 (285)
T COG5084 152 CGYSHIDPDSFAGNCDQYSGATYGFCPLGASCKFSHTLKRVSYGSSPCGNYT-PPFSPPGTPSESVSSWGYGKGTSCSLS 230 (285)
T ss_pred CCccccCcccccccccccCcccccccCCCCccccccccccccccccccccCc-CCcCCCCCCccccccccccccccccCC
Confidence 9999999888899999997 7999999999999984 499999 899999988 9999
Q ss_pred CCCCCCC
Q 039602 2017 HPKSRSN 2023 (2132)
Q Consensus 2017 Hperesr 2023 (2132)
|+.-..-
T Consensus 231 ~ps~~~~ 237 (285)
T COG5084 231 HPSLNID 237 (285)
T ss_pred CccccCC
Confidence 9877643
No 4
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=99.16 E-value=2.1e-11 Score=141.42 Aligned_cols=126 Identities=27% Similarity=0.692 Sum_probs=107.1
Q ss_pred ccCccccccccccccccCCCCCCCCCCC--CCccccccccc-cCccCCC-CcccccccCCCCCCCCcccccCCCCC-CCC
Q 039602 1888 ARKRKYCQFFTRFGKCNKDNGKCPYIHD--PSKIAVCTKFL-KGLCSNS-DCKLTHKVIPERMPDCSYFLQGLCTN-KNC 1962 (2132)
Q Consensus 1888 ~KKtq~CkfFlRTGkCkKgG~~CpFiHD--PsKvAICKfFL-RG~CsnG-SCpFSHepspeRmPvCrfFLnG~CsN-dnC 1962 (2132)
..+..+|+||++ |.|++ |+.|.|+|+ ..+.+.|.||- .|.|.++ .|+|.|.........|.+|..|.|.. +.|
T Consensus 74 ~~~~~vcK~~l~-glC~k-gD~C~Flhe~~~~k~rec~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~~~~~g~c~~g~~c 151 (325)
T KOG1040|consen 74 SRGKVVCKHWLR-GLCKK-GDQCEFLHEYDLTKMRECKFFSLFGECTNGKDCPYLHGDPQTAIKKCKWYKEGFCRGGPSC 151 (325)
T ss_pred cCCceeehhhhh-hhhhc-cCcCcchhhhhhcccccccccccccccccccCCcccCCChhhhhhccchhhhccCCCcchh
Confidence 567889999999 99999 899999996 45777888887 5999996 99999987566778999999999998 999
Q ss_pred CCCCCCCCCCCccCccccccCCCCCCc-ccCCCC-ccccCCCCcCcCCCCCCCCCCCCCCC
Q 039602 1963 PYRHVHVNPNASTCEGFLKGYCADGDE-CRKKHS-YVCPTFKATGSCALGAKCRLHHPKSR 2021 (2132)
Q Consensus 1963 PYsHVK~spKapVCrdFlqGyCpKGdk-CpFRHv-~eCPDFa~TGsCprGdkCKFaHpere 2021 (2132)
+|.|... .+|..|+.|+|+.|.. |.+.|. +.|+-|. .+.|.. .-|++.+....
T Consensus 152 ~~~h~~~----~~c~~y~~gfC~~g~q~c~~~hp~~~~~~~~-~~~~q~-~~~~~~~~~~~ 206 (325)
T KOG1040|consen 152 KKRHERK----VLCPPYNAGFCPKGPQRCDMLHPEFQQPPFH-QGSVQH-PPQRQSQQPGK 206 (325)
T ss_pred hhhhhcc----cCCCchhhhhccCCCCcccccCCCCCCChhh-ccccCC-CCCCCCcCccc
Confidence 9999875 8999999999999987 999997 6787776 666765 56666665554
No 5
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=99.06 E-value=5.8e-11 Score=130.70 Aligned_cols=101 Identities=29% Similarity=0.683 Sum_probs=91.1
Q ss_pred cccccccc-cCccCCC-CcccccccCCCCCCCCcccccCCCCC-CCCCCCCCCCCCCCccCccccccCCCCCCcccCCCC
Q 039602 1919 IAVCTKFL-KGLCSNS-DCKLTHKVIPERMPDCSYFLQGLCTN-KNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHS 1995 (2132)
Q Consensus 1919 vAICKfFL-RG~CsnG-SCpFSHepspeRmPvCrfFLnG~CsN-dnCPYsHVK~spKapVCrdFlqGyCpKGdkCpFRHv 1995 (2132)
...|+||. +|.|-+| .|+|-|++. +..+|..|++|.|.+ .+|...|...+...|.|++|+.|.|.. ++|+|.|.
T Consensus 206 avycryynangicgkgaacrfvhept--rkticpkflngrcnkaedcnlsheldprripacryfllgkcnn-pncryvhi 282 (377)
T KOG1492|consen 206 AVYCRYYNANGICGKGAACRFVHEPT--RKTICPKFLNGRCNKAEDCNLSHELDPRRIPACRYFLLGKCNN-PNCRYVHI 282 (377)
T ss_pred eeEEEEecCCCcccCCceeeeecccc--ccccChHHhcCccCchhcCCcccccCccccchhhhhhhccCCC-CCceEEEE
Confidence 35699998 5999998 999999875 567999999999999 899999999989999999999999976 79999986
Q ss_pred ------ccccCCCCcCcCCCCCCCCCCCCCCCC
Q 039602 1996 ------YVCPTFKATGSCALGAKCRLHHPKSRS 2022 (2132)
Q Consensus 1996 ------~eCPDFa~TGsCprGdkCKFaHperes 2022 (2132)
.+|..|++.|+|..|..|+-.|...-.
T Consensus 283 hysenapicfefakygfcelgtscknqhilqct 315 (377)
T KOG1492|consen 283 HYSENAPICFEFAKYGFCELGTSCKNQHILQCT 315 (377)
T ss_pred eecCCCceeeeehhcceeccccccccceeeeec
Confidence 689999999999999999999987653
No 6
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=98.89 E-value=9.1e-10 Score=126.99 Aligned_cols=128 Identities=27% Similarity=0.662 Sum_probs=98.4
Q ss_pred ccccccccccccccCCCCC-CCCCCCCC-------ccccccccccCccCCCCcccccccCCC------------------
Q 039602 1891 RKYCQFFTRFGKCNKDNGK-CPYIHDPS-------KIAVCTKFLKGLCSNSDCKLTHKVIPE------------------ 1944 (2132)
Q Consensus 1891 tq~CkfFlRTGkCkKgG~~-CpFiHDPs-------KvAICKfFLRG~CsnGSCpFSHepspe------------------ 1944 (2132)
..+|+.|+| |.|.+ |+. |+|.|.+. ++..|.+|++|.|.+.+|+|.|.+...
T Consensus 37 ~eVCReF~r-n~C~R-~d~~CkfaHP~~~~~V~~g~v~aC~Ds~kgrCsR~nCkylHpp~hlkdql~ingrn~l~lq~~~ 114 (331)
T KOG2494|consen 37 LEVCREFLR-NTCSR-GDRECKFAHPPKNCQVSNGRVIACFDSQKGRCSRENCKYLHPPQHLKDQLKINGRNNLILQKTA 114 (331)
T ss_pred HHHHHHHHh-ccccC-CCccccccCCCCCCCccCCeEEEEeccccCccCcccceecCCChhhhhhhhhcccccHHHHHHH
Confidence 578999999 99999 666 99999863 567799999999999999999987642
Q ss_pred -----------CCCCCc--ccccCCCCC--CCCCCCCCCCC--------------------------------------C
Q 039602 1945 -----------RMPDCS--YFLQGLCTN--KNCPYRHVHVN--------------------------------------P 1971 (2132)
Q Consensus 1945 -----------RmPvCr--fFLnG~CsN--dnCPYsHVK~s--------------------------------------p 1971 (2132)
..|+|. .|..+.|.. ..|.|.|+... +
T Consensus 115 aA~~~q~~~~~g~Pi~~v~~f~~~~~~~g~~~~s~~~y~~~~Pg~~vp~~~~p~~~~~~~g~p~v~~~~~~~~~k~~r~~ 194 (331)
T KOG2494|consen 115 AAMLAQQMQGPGTPICSVPMFATGPCLGGNTACSYWPYLPPVPGGLVPADGLPTTPVFVPGGPGVPGPGLVGGQKLLRSD 194 (331)
T ss_pred HhhhcccccCCCccccccccccccccccCCCccccccccCCCCCCCCCCcCCCCCccccCCCCcccccccccccccccCC
Confidence 135676 566666664 67887766541 0
Q ss_pred CCccCccccccCCCCC-CcccCCCC-------------ccccCCCCcCcCCCCCCCCCCCCCCCCC
Q 039602 1972 NASTCEGFLKGYCADG-DECRKKHS-------------YVCPTFKATGSCALGAKCRLHHPKSRSN 2023 (2132)
Q Consensus 1972 KapVCrdFlqGyCpKG-dkCpFRHv-------------~eCPDFa~TGsCprGdkCKFaHperesr 2023 (2132)
..++|+. ..|.|.++ ..|.|+|. ..|+.+. +|.|.. ++|+|-|......
T Consensus 195 ~~e~~~~-~~gn~~r~e~d~~f~~~~k~~~~~s~~~t~~~~~~~t-~~~~~~-en~~~~~~~~h~~ 257 (331)
T KOG2494|consen 195 RLEVCRE-QRGNCRRGEQDAQFAHPAKSIMIDSNDNTVEVCLRYT-KGRCET-ENCKYFHAPAHDQ 257 (331)
T ss_pred CCCCCcc-cccccccchhHHHHhhhhhhhhcccCCCcchhccccc-cceech-hcccccCchHHHH
Confidence 1245665 56777777 46888884 6899999 999998 8999999877644
No 7
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=2.7e-08 Score=118.27 Aligned_cols=124 Identities=20% Similarity=0.336 Sum_probs=88.7
Q ss_pred cccccccccccccCCCCCCCCCCCC---CccccccccccCccCCCCcccccccCCC--CCCCCcccccCC-CCCCCCCCC
Q 039602 1892 KYCQFFTRFGKCNKDNGKCPYIHDP---SKIAVCTKFLKGLCSNSDCKLTHKVIPE--RMPDCSYFLQGL-CTNKNCPYR 1965 (2132)
Q Consensus 1892 q~CkfFlRTGkCkKgG~~CpFiHDP---sKvAICKfFLRG~CsnGSCpFSHepspe--RmPvCrfFLnG~-CsNdnCPYs 1965 (2132)
..|.||+. -.|++ ++.|.|.|.. .....|.+|+.+.|-...|+|.|.-... +...|+|+.+|. |.++.|-|.
T Consensus 4 ~dcyff~y-s~cKk-~d~c~~rh~E~al~n~t~C~~w~~~~~C~k~C~YRHSe~~~kr~e~~CYwe~~p~gC~k~~CgfR 81 (667)
T KOG4791|consen 4 EDCYFFFY-STCKK-GDSCPFRHCEAALGNETVCTLWQEGRCCRKVCRYRHSEIDKKRSEIPCYWENQPTGCQKLNCGFR 81 (667)
T ss_pred ccchhhhh-hhhhc-cCcCcchhhHHHhcCcchhhhhhhcCcccccccchhhHHhhhcCcccceeecCCCccCCCccccc
Confidence 46999986 89999 8999999974 4677899999988776799999974332 234899999987 999999999
Q ss_pred CCCCCCC-----CccCccccccCCCCCCcccCCC------CccccCCCCcCcCCCCCCCCCCCCCCCC
Q 039602 1966 HVHVNPN-----ASTCEGFLKGYCADGDECRKKH------SYVCPTFKATGSCALGAKCRLHHPKSRS 2022 (2132)
Q Consensus 1966 HVK~spK-----apVCrdFlqGyCpKGdkCpFRH------v~eCPDFa~TGsCprGdkCKFaHperes 2022 (2132)
|..++.+ .+..+.. -..+..-.-.| ..+|-+|. +|.|..++-|-|.|...+.
T Consensus 82 H~~pPLkg~l~~~p~~pe~----ev~~~~~SAq~~sV~~~p~P~l~~~-K~~e~~~D~~s~Lh~P~A~ 144 (667)
T KOG4791|consen 82 HNRPPLKGVLPTVPESPEE----EVKASQLSAQQNSVQSNPSPQLRSV-KKVESSEDVPSPLHPPVAI 144 (667)
T ss_pred cCCCchhhhccCCCCCccc----ccccccccCCCcccccCCchHHHHh-hhhhhhccccccCCCCccc
Confidence 9764321 1111100 00122222233 25788888 8999999999999988553
No 8
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=98.43 E-value=3.5e-07 Score=105.49 Aligned_cols=99 Identities=25% Similarity=0.613 Sum_probs=85.7
Q ss_pred cCccccccccccccccCCCCCCCCCCCC--Cc--ccccccc-ccCccCCC-CcccccccCCCCCCCCcccc---cCCCCC
Q 039602 1889 RKRKYCQFFTRFGKCNKDNGKCPYIHDP--SK--IAVCTKF-LKGLCSNS-DCKLTHKVIPERMPDCSYFL---QGLCTN 1959 (2132)
Q Consensus 1889 KKtq~CkfFlRTGkCkKgG~~CpFiHDP--sK--vAICKfF-LRG~CsnG-SCpFSHepspeRmPvCrfFL---nG~CsN 1959 (2132)
...++|++|.+ |.|.+ +..|.|.|.. .+ ...|++| +.|.|..| .|.+.|.......+.|.+|. .+.|.+
T Consensus 102 ~s~V~c~~~~~-g~c~s-~~~c~~lh~~d~~~s~~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~~~~~~~~~~~~~~f~p~ 179 (285)
T COG5084 102 SSSVVCKFFLR-GLCKS-GFSCEFLHEYDLRSSQGPPCRSFSLKGSCSSGPSCGYSHIDPDSFAGNCDQYSGATYGFCPL 179 (285)
T ss_pred cCCcccchhcc-ccCcC-CCccccccCCCcccccCCCcccccccceeccCCCCCccccCcccccccccccCcccccccCC
Confidence 56789999998 99999 8999999974 34 7789999 78999998 99999987677788999998 699998
Q ss_pred -CCCCCCCCCCC--CCCccCccccccCCCCCCc
Q 039602 1960 -KNCPYRHVHVN--PNASTCEGFLKGYCADGDE 1989 (2132)
Q Consensus 1960 -dnCPYsHVK~s--pKapVCrdFlqGyCpKGdk 1989 (2132)
..|++.|.... .....|..|..++|+.|..
T Consensus 180 g~~c~~~H~~~~~~~~~~p~~~y~~~fsP~g~~ 212 (285)
T COG5084 180 GASCKFSHTLKRVSYGSSPCGNYTPPFSPPGTP 212 (285)
T ss_pred CCccccccccccccccccccccCcCCcCCCCCC
Confidence 99999999752 2334799999999999976
No 9
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.37 E-value=4e-07 Score=104.77 Aligned_cols=111 Identities=24% Similarity=0.503 Sum_probs=64.8
Q ss_pred cccccccccccccCCCCCCCCCCCC-C--ccccccccccCccCCCCcccccc--cCCCCCCCCcccc-cCCCCC--CCCC
Q 039602 1892 KYCQFFTRFGKCNKDNGKCPYIHDP-S--KIAVCTKFLKGLCSNSDCKLTHK--VIPERMPDCSYFL-QGLCTN--KNCP 1963 (2132)
Q Consensus 1892 q~CkfFlRTGkCkKgG~~CpFiHDP-s--KvAICKfFLRG~CsnGSCpFSHe--pspeRmPvCrfFL-nG~CsN--dnCP 1963 (2132)
..|.+|.+++.|.. +..|+|.|.. . ....+ .-.+. +...+++.|.+|. .|.|.+ ..|.
T Consensus 87 ~~~~~~~~~~~~~~-~s~~~~~~p~~~~~~~~~~-------------~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~cr 152 (332)
T KOG1677|consen 87 GDCSAYLRTGVCGY-GSSCRYNHPDLRLRPRPVR-------------RSRGERKPERYKTPLCRSFRKSGTCKYRGEQCR 152 (332)
T ss_pred cccccccccCCCCC-CCCCCccCcccccccCCcc-------------ccccccCcccccCCcceeeecCccccccCchhh
Confidence 78999999999998 7899999974 1 11111 00000 1112455666665 456664 5666
Q ss_pred CCCCCCCCCCccCccccccCCCCCCcccCCCCccccCCCCcCcCCCCCCCCCCCCCCCCC
Q 039602 1964 YRHVHVNPNASTCEGFLKGYCADGDECRKKHSYVCPTFKATGSCALGAKCRLHHPKSRSN 2023 (2132)
Q Consensus 1964 YsHVK~spKapVCrdFlqGyCpKGdkCpFRHv~eCPDFa~TGsCprGdkCKFaHperesr 2023 (2132)
|.|.......+. ..|..+ ..+.--..+|+.|..+|.|++|..|+|.|+..+..
T Consensus 153 fah~~~e~r~~~------~~~~~~-~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~ 205 (332)
T KOG1677|consen 153 FAHGLEELRLPS------SENQVG-NPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDR 205 (332)
T ss_pred hcCCcccccccc------cchhhc-CCCCCCCcCCCccccCCCCCCCCcCeecCCCcccc
Confidence 666554322211 000000 01111236788898889999999999999877543
No 10
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.31 E-value=8.4e-07 Score=107.95 Aligned_cols=131 Identities=25% Similarity=0.568 Sum_probs=91.8
Q ss_pred Ccccccccc-ccccccCCCCCCCCCCCC------------CccccccccccCccCCC--CcccccccCCCCC--------
Q 039602 1890 KRKYCQFFT-RFGKCNKDNGKCPYIHDP------------SKIAVCTKFLKGLCSNS--DCKLTHKVIPERM-------- 1946 (2132)
Q Consensus 1890 Ktq~CkfFl-RTGkCkKgG~~CpFiHDP------------sKvAICKfFLRG~CsnG--SCpFSHepspeRm-------- 1946 (2132)
...+|.-|. .+|.|..++..|.|+|.. .|...|--=.+|.|... .|-|+|.+...+.
T Consensus 75 ~~i~~~~~~e~~~~C~~~~~~C~~~g~s~~~~e~~~hL~~~k~~~~~tda~g~~~~~v~~~~~~~~~~~~r~~~~~l~e~ 154 (528)
T KOG1595|consen 75 PDIYCTKYDEVTGICPDGDEHCAVLGRSVGDTERTYHLRYYKTLPCVTDARGNCVKNVLHCAFAHGPNDLRPPVEDLLEL 154 (528)
T ss_pred cceeecchhhccccCCCCcccchhcccccCCcceeEeccccccccCccccCCCcccCcccccccCCccccccHHHHHHhc
Confidence 567888776 469999944449999963 13445553336888764 8999997652110
Q ss_pred ----------------------------CC------Cccc-----ccCCCCC------CCCCCCCCCC----------CC
Q 039602 1947 ----------------------------PD------CSYF-----LQGLCTN------KNCPYRHVHV----------NP 1971 (2132)
Q Consensus 1947 ----------------------------Pv------CrfF-----LnG~CsN------dnCPYsHVK~----------sp 1971 (2132)
|. |-.| .--.|.+ -+|||.|.-. ..
T Consensus 155 ~~~~~~~~~e~~~~~~~~~~~y~~Dp~~pdi~~~ys~DeFrMy~fKir~C~R~~shDwteCPf~HpgEkARRRDPRkyhY 234 (528)
T KOG1595|consen 155 QGGSGLPDDEPEVESKLDVTEYPEDPSWPDINGIYSSDEFRMYSFKIRRCSRPRSHDWTECPFAHPGEKARRRDPRKYHY 234 (528)
T ss_pred ccccCccCCCcccccccccccccCCCCcccccccccccceEEEeeeecccCCccCCCcccCCccCCCcccccCCcccccc
Confidence 11 1112 1124554 6999999421 12
Q ss_pred CCccCccccccCCCCCCcccCCCC-------------ccccCCCCcCcCCCCCCCCCCCCCCCCCC
Q 039602 1972 NASTCEGFLKGYCADGDECRKKHS-------------YVCPTFKATGSCALGAKCRLHHPKSRSNG 2024 (2132)
Q Consensus 1972 KapVCrdFlqGyCpKGdkCpFRHv-------------~eCPDFa~TGsCprGdkCKFaHperesr~ 2024 (2132)
...+|+.|-+|-|.+|+.|.|.|. ..|+| .|.|++ .-|.|+|...+.+.
T Consensus 235 s~tpCPefrkG~C~rGD~CEyaHgvfEcwLHPa~YRT~~CkD---g~~C~R-rvCfFAH~~eqLR~ 296 (528)
T KOG1595|consen 235 SSTPCPEFRKGSCERGDSCEYAHGVFECWLHPARYRTRKCKD---GGYCPR-RVCFFAHSPEQLRP 296 (528)
T ss_pred cCccCcccccCCCCCCCccccccceehhhcCHHHhccccccC---CCCCcc-ceEeeecChHHhcc
Confidence 347899999999999999999996 57888 389999 99999999988754
No 11
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=98.18 E-value=4.6e-07 Score=105.25 Aligned_cols=102 Identities=25% Similarity=0.476 Sum_probs=78.3
Q ss_pred cccccccccCccCCC--CcccccccCC-----CCCCCCcccccCCCCCCCCCCCCCCCCCC------CccCccccccCCC
Q 039602 1919 IAVCTKFLKGLCSNS--DCKLTHKVIP-----ERMPDCSYFLQGLCTNKNCPYRHVHVNPN------ASTCEGFLKGYCA 1985 (2132)
Q Consensus 1919 vAICKfFLRG~CsnG--SCpFSHepsp-----eRmPvCrfFLnG~CsNdnCPYsHVK~spK------apVCrdFlqGyCp 1985 (2132)
..+|+.||+|.|.++ .|+|.|.+.. .+...|..|++|.|++++|+|.|.....+ -+.|.-+.++-|.
T Consensus 37 ~eVCReF~rn~C~R~d~~CkfaHP~~~~~V~~g~v~aC~Ds~kgrCsR~nCkylHpp~hlkdql~ingrn~l~lq~~~aA 116 (331)
T KOG2494|consen 37 LEVCREFLRNTCSRGDRECKFAHPPKNCQVSNGRVIACFDSQKGRCSRENCKYLHPPQHLKDQLKINGRNNLILQKTAAA 116 (331)
T ss_pred HHHHHHHHhccccCCCccccccCCCCCCCccCCeEEEEeccccCccCcccceecCCChhhhhhhhhcccccHHHHHHHHh
Confidence 578999999999998 6999997642 24457999999999999999999865432 2567666666666
Q ss_pred CC-CcccCCCCcccc--CCCCcCcCCCC-CCCCCCCCCCC
Q 039602 1986 DG-DECRKKHSYVCP--TFKATGSCALG-AKCRLHHPKSR 2021 (2132)
Q Consensus 1986 KG-dkCpFRHv~eCP--DFa~TGsCprG-dkCKFaHpere 2021 (2132)
.+ ..|.+.-..+|+ .|. +|-|..| ..|.|.|....
T Consensus 117 ~~~q~~~~~g~Pi~~v~~f~-~~~~~~g~~~~s~~~y~~~ 155 (331)
T KOG2494|consen 117 MLAQQMQGPGTPICSVPMFA-TGPCLGGNTACSYWPYLPP 155 (331)
T ss_pred hhcccccCCCcccccccccc-ccccccCCCccccccccCC
Confidence 64 556665667787 777 8888877 47999887663
No 12
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=97.81 E-value=4.2e-05 Score=88.41 Aligned_cols=58 Identities=29% Similarity=0.644 Sum_probs=49.3
Q ss_pred hccccCccccccccccccccCCCCCCCCCCCCC-----------------cccccccccc-CccCCC-CcccccccC
Q 039602 1885 LRLARKRKYCQFFTRFGKCNKDNGKCPYIHDPS-----------------KIAVCTKFLK-GLCSNS-DCKLTHKVI 1942 (2132)
Q Consensus 1885 ~rl~KKtq~CkfFlRTGkCkKgG~~CpFiHDPs-----------------KvAICKfFLR-G~CsnG-SCpFSHeps 1942 (2132)
.....+..+|.+|.++|.|.+.|.+|+|.|..+ |..+|.+|++ |.|++| .|.|.|...
T Consensus 126 ~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~ 202 (332)
T KOG1677|consen 126 KPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEP 202 (332)
T ss_pred CcccccCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCc
Confidence 345688999999999999997579999999521 4688999997 999999 999999854
No 13
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=97.63 E-value=0.00011 Score=85.35 Aligned_cols=132 Identities=22% Similarity=0.441 Sum_probs=82.6
Q ss_pred CccccccccccccccCCCCCCCCCCCC-----------Ccccccccccc-CccCCC-CcccccccCCC--------C---
Q 039602 1890 KRKYCQFFTRFGKCNKDNGKCPYIHDP-----------SKIAVCTKFLK-GLCSNS-DCKLTHKVIPE--------R--- 1945 (2132)
Q Consensus 1890 Ktq~CkfFlRTGkCkKgG~~CpFiHDP-----------sKvAICKfFLR-G~CsnG-SCpFSHepspe--------R--- 1945 (2132)
++..|+.-...+.|+. +..|+|.|.. .|+.-|.-|++ |.|..+ .|-|.|-+.-. +
T Consensus 114 kt~~l~ss~~~~~~~~-p~~n~fahs~~issl~~~~~K~kt~slev~in~~~vp~s~~~~~~slP~t~~~~q~l~~rkpk 192 (351)
T COG5063 114 KTEMLRSSTEIPYCRY-PDKNPFAHSKAISSLAQTHPKYKTESLEVFINPGYVPYSKRCCFISLPLTDINLQPLSQRKPK 192 (351)
T ss_pred cchhhhcccccccccc-CCCCcCCCccccccccccCccccccceeEEecCCccccccccccccccccccCcchhhccCcc
Confidence 3445555433478887 7899999963 24566777776 788877 67777754311 1
Q ss_pred -CCCCcccccCCCCC-CCCCCC--CCCCC----CCC--ccCccc-cccCCCC---CCcccCC---CC-------------
Q 039602 1946 -MPDCSYFLQGLCTN-KNCPYR--HVHVN----PNA--STCEGF-LKGYCAD---GDECRKK---HS------------- 1995 (2132)
Q Consensus 1946 -mPvCrfFLnG~CsN-dnCPYs--HVK~s----pKa--pVCrdF-lqGyCpK---GdkCpFR---Hv------------- 1995 (2132)
...|.-|..|.=.. .-|.-+ |.... .++ ..|..| ..|+|+. |..|.|. |.
T Consensus 193 s~~~~~s~t~~kes~a~P~~~~~~~~~e~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~f 272 (351)
T COG5063 193 SGKNCTSYTLGKESDAHPHDELIYQKQEQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNF 272 (351)
T ss_pred cCcCccccccccccccCchhhhhhhhhhccchhhcCCHHHhhccCcCCCCcccccccccccccccccccccccccccccc
Confidence 11334444332222 122221 22111 123 678888 4688888 8888888 64
Q ss_pred --ccccCCCCcCcCCCCCCCCCCCCCCCC
Q 039602 1996 --YVCPTFKATGSCALGAKCRLHHPKSRS 2022 (2132)
Q Consensus 1996 --~eCPDFa~TGsCprGdkCKFaHperes 2022 (2132)
..|.+|+.-|+|++|..|.|.|+....
T Consensus 273 rTePcinwe~sGyc~yg~Rc~F~hgd~~~ 301 (351)
T COG5063 273 RTEPCINWEKSGYCPYGLRCCFKHGDDSD 301 (351)
T ss_pred ccCCccchhhcccCccccccccccCChhh
Confidence 478888888899999999999876654
No 14
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=2.1e-05 Score=94.49 Aligned_cols=63 Identities=22% Similarity=0.490 Sum_probs=46.2
Q ss_pred ccccccccCccCCC-CcccccccCCC-CCCCCcccccCCCCCCCCCCCCCCCCCC--CccCcccccc
Q 039602 1920 AVCTKFLKGLCSNS-DCKLTHKVIPE-RMPDCSYFLQGLCTNKNCPYRHVHVNPN--ASTCEGFLKG 1982 (2132)
Q Consensus 1920 AICKfFLRG~CsnG-SCpFSHepspe-RmPvCrfFLnG~CsNdnCPYsHVK~spK--apVCrdFlqG 1982 (2132)
..|.||+...|+++ .|.|+|.-... ....|.+|+.+.|-.+.|+|.|.....+ ...|.|+++|
T Consensus 4 ~dcyff~ys~cKk~d~c~~rh~E~al~n~t~C~~w~~~~~C~k~C~YRHSe~~~kr~e~~CYwe~~p 70 (667)
T KOG4791|consen 4 EDCYFFFYSTCKKGDSCPFRHCEAALGNETVCTLWQEGRCCRKVCRYRHSEIDKKRSEIPCYWENQP 70 (667)
T ss_pred ccchhhhhhhhhccCcCcchhhHHHhcCcchhhhhhhcCcccccccchhhHHhhhcCcccceeecCC
Confidence 46999999999987 89999986543 3458999998888888999999865432 2344444433
No 15
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=96.94 E-value=0.0014 Score=82.37 Aligned_cols=112 Identities=19% Similarity=0.482 Sum_probs=68.3
Q ss_pred cCccccccccccccccCCCCCCCCCCCCCccccccccccCccCCC-CcccccccCCCCCCCCcccccCCCCCCCCCCCCC
Q 039602 1889 RKRKYCQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCSNS-DCKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHV 1967 (2132)
Q Consensus 1889 KKtq~CkfFlRTGkCkKgG~~CpFiHDPsKvAICKfFLRG~CsnG-SCpFSHepspeRmPvCrfFLnG~CsNdnCPYsHV 1967 (2132)
+....|.||.. |.+ ..|.|.|.... ..|.-| ..|..+ .|.|+|. -|.|-. .|++.+|.|.|.
T Consensus 542 k~l~~Cky~~~---Ct~--a~Ce~~HPtaa-~~~~s~--p~k~fa~~~~ks~p-------~Ck~~~--kCtasDC~~sH~ 604 (681)
T KOG3702|consen 542 KILTRCKYGPA---CTS--AECEFAHPTAA-ENAKSL--PNKKFASKCLKSHP-------GCKFGK--KCTASDCNYSHA 604 (681)
T ss_pred eeeccccCCCc---CCc--hhhhhcCCcch-hhhhcc--ccccccccceeccc-------cccccc--ccccccCccccc
Confidence 34556777754 664 67777776321 012222 224444 5666663 355433 589999999998
Q ss_pred CCCC---CCccCccc----cccCCCCCC-----cccCCCCccccCCCCcCcCCCCCCCCCCCCCC
Q 039602 1968 HVNP---NASTCEGF----LKGYCADGD-----ECRKKHSYVCPTFKATGSCALGAKCRLHHPKS 2020 (2132)
Q Consensus 1968 K~sp---KapVCrdF----lqGyCpKGd-----kCpFRHv~eCPDFa~TGsCprGdkCKFaHper 2020 (2132)
...- -+++-.+| ..+.|.++. .|+|.|...|.+-. .|+.-..|-|.|...
T Consensus 605 ~~~~pvq~t~ip~~~~~~ti~~~CrY~pnCrnm~C~F~HPk~cRf~~---~c~~~~sc~fYh~r~ 666 (681)
T KOG3702|consen 605 GRRIPVQPTRIPPPFPGGTIRGLCRYRPNCRNMQCKFYHPKTCRFNT---NCPNNPSCTFYHERP 666 (681)
T ss_pred CCCCCCccccCCCCCCCCCccccceeccCcCCccccccCCccccccc---cCCCCcccccccCCc
Confidence 6531 11222223 246777654 57899999999844 688658999999866
No 16
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=96.85 E-value=0.00025 Score=82.30 Aligned_cols=29 Identities=38% Similarity=0.885 Sum_probs=25.2
Q ss_pred cccCccccccccccccccCCCCCCCCCCCCC
Q 039602 1887 LARKRKYCQFFTRFGKCNKDNGKCPYIHDPS 1917 (2132)
Q Consensus 1887 l~KKtq~CkfFlRTGkCkKgG~~CpFiHDPs 1917 (2132)
+.++..+|.||.. |.|.+ |..|+|+||.+
T Consensus 88 vDPKSvvCafFk~-g~C~K-G~kCKFsHdl~ 116 (343)
T KOG1763|consen 88 VDPKSVVCAFFKQ-GTCTK-GDKCKFSHDLA 116 (343)
T ss_pred CCchHHHHHHHhc-cCCCC-CCcccccchHH
Confidence 3467889999987 99999 89999999963
No 17
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=96.66 E-value=0.00047 Score=55.11 Aligned_cols=26 Identities=42% Similarity=0.939 Sum_probs=19.8
Q ss_pred CccccccccccccccCCCCCCCCCCCC
Q 039602 1890 KRKYCQFFTRFGKCNKDNGKCPYIHDP 1916 (2132)
Q Consensus 1890 Ktq~CkfFlRTGkCkKgG~~CpFiHDP 1916 (2132)
+..+|++|.++|.|.+ |+.|+|+|++
T Consensus 2 k~~~C~~f~~~g~C~~-G~~C~f~H~~ 27 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPF-GDKCRFAHGE 27 (27)
T ss_dssp TSSB-HHHHHTS--TT-GGGSSSBSSG
T ss_pred ccccChhhccCCccCC-CCCcCccCCC
Confidence 5678999999999999 8999999974
No 18
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=96.61 E-value=0.0029 Score=74.09 Aligned_cols=133 Identities=18% Similarity=0.335 Sum_probs=83.0
Q ss_pred ccccccccc-cCccCCC-CcccccccCCC---------CCCCCcccc-cCCCCC-CCCCCCCCCCCC------------C
Q 039602 1918 KIAVCTKFL-KGLCSNS-DCKLTHKVIPE---------RMPDCSYFL-QGLCTN-KNCPYRHVHVNP------------N 1972 (2132)
Q Consensus 1918 KvAICKfFL-RG~CsnG-SCpFSHepspe---------RmPvCrfFL-nG~CsN-dnCPYsHVK~sp------------K 1972 (2132)
+..+|..-- .+.|..+ .|+|.|..... ++..|..|. .|.|.. .+|-|.|..... .
T Consensus 114 kt~~l~ss~~~~~~~~p~~n~fahs~~issl~~~~~K~kt~slev~in~~~vp~s~~~~~~slP~t~~~~q~l~~rkpks 193 (351)
T COG5063 114 KTEMLRSSTEIPYCRYPDKNPFAHSKAISSLAQTHPKYKTESLEVFINPGYVPYSKRCCFISLPLTDINLQPLSQRKPKS 193 (351)
T ss_pred cchhhhccccccccccCCCCcCCCccccccccccCccccccceeEEecCCccccccccccccccccccCcchhhccCccc
Confidence 445555432 4788888 89999974321 234576666 588887 557666654311 1
Q ss_pred CccCccccccCCCCCCcccCC--C----------C--ccccCCCCcCcCCC---CCCCCCC---CCCCCCCCcccccCC-
Q 039602 1973 ASTCEGFLKGYCADGDECRKK--H----------S--YVCPTFKATGSCAL---GAKCRLH---HPKSRSNGKKSRRSR- 2031 (2132)
Q Consensus 1973 apVCrdFlqGyCpKGdkCpFR--H----------v--~eCPDFa~TGsCpr---GdkCKFa---Hperesr~RK~r~s~- 2031 (2132)
...|.-|..|.-....-|..+ | . .+|.-|...|.|+. |..|.|+ |+..+.+.++.++..
T Consensus 194 ~~~~~s~t~~kes~a~P~~~~~~~~~e~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~fr 273 (351)
T COG5063 194 GKNCTSYTLGKESDAHPHDELIYQKQEQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFR 273 (351)
T ss_pred CcCccccccccccccCchhhhhhhhhhccchhhcCCHHHhhccCcCCCCccccccccccccccccccccccccccccccc
Confidence 234555544432222222222 1 1 68999999999999 9999999 999998887766655
Q ss_pred ------CCC---CCCCCcccccccCCcc
Q 039602 2032 ------KPK---NTHGRYFGSMLVEDSE 2050 (2132)
Q Consensus 2032 ------~~k---ns~GRYfg~~~~~~se 2050 (2132)
|++ ...|.-..|-|-++..
T Consensus 274 TePcinwe~sGyc~yg~Rc~F~hgd~~~ 301 (351)
T COG5063 274 TEPCINWEKSGYCPYGLRCCFKHGDDSD 301 (351)
T ss_pred cCCccchhhcccCccccccccccCChhh
Confidence 222 4455556666666544
No 19
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=96.59 E-value=0.0015 Score=80.60 Aligned_cols=65 Identities=28% Similarity=0.650 Sum_probs=48.1
Q ss_pred cccCCCCCCCCCCCCCc------------cccccccccCccCCC-CcccccccCC-------CCCCCCcccccCCCCCCC
Q 039602 1902 KCNKDNGKCPYIHDPSK------------IAVCTKFLKGLCSNS-DCKLTHKVIP-------ERMPDCSYFLQGLCTNKN 1961 (2132)
Q Consensus 1902 kCkKgG~~CpFiHDPsK------------vAICKfFLRG~CsnG-SCpFSHepsp-------eRmPvCrfFLnG~CsNdn 1961 (2132)
.|.- +..|+|.|..+| -..|+.|.+|.|.+| .|.|.|.... .|+..|..- |.|.+.-
T Consensus 208 ~shD-wteCPf~HpgEkARRRDPRkyhYs~tpCPefrkG~C~rGD~CEyaHgvfEcwLHPa~YRT~~CkDg--~~C~Rrv 284 (528)
T KOG1595|consen 208 RSHD-WTECPFAHPGEKARRRDPRKYHYSSTPCPEFRKGSCERGDSCEYAHGVFECWLHPARYRTRKCKDG--GYCPRRV 284 (528)
T ss_pred cCCC-cccCCccCCCcccccCCcccccccCccCcccccCCCCCCCccccccceehhhcCHHHhccccccCC--CCCccce
Confidence 3444 578999995321 367999999999998 8999998643 356667654 7888888
Q ss_pred CCCCCCCC
Q 039602 1962 CPYRHVHV 1969 (2132)
Q Consensus 1962 CPYsHVK~ 1969 (2132)
|-|+|...
T Consensus 285 CfFAH~~e 292 (528)
T KOG1595|consen 285 CFFAHSPE 292 (528)
T ss_pred EeeecChH
Confidence 88888754
No 20
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=95.90 E-value=0.0011 Score=53.05 Aligned_cols=23 Identities=43% Similarity=0.996 Sum_probs=13.7
Q ss_pred ccccCCCCcCcCCCCCCCCCCCC
Q 039602 1996 YVCPTFKATGSCALGAKCRLHHP 2018 (2132)
Q Consensus 1996 ~eCPDFa~TGsCprGdkCKFaHp 2018 (2132)
.+|++|..+|.|++|+.|+|+|+
T Consensus 4 ~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 4 KLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp SB-HHHHHTS--TTGGGSSSBSS
T ss_pred ccChhhccCCccCCCCCcCccCC
Confidence 35666666677777777777775
No 21
>smart00356 ZnF_C3H1 zinc finger.
Probab=95.42 E-value=0.01 Score=46.09 Aligned_cols=24 Identities=33% Similarity=0.935 Sum_probs=18.3
Q ss_pred CccccccccccccccCCCCCCCCCCC
Q 039602 1890 KRKYCQFFTRFGKCNKDNGKCPYIHD 1915 (2132)
Q Consensus 1890 Ktq~CkfFlRTGkCkKgG~~CpFiHD 1915 (2132)
+..+|++| ..|.|.+ |..|+|.|+
T Consensus 3 k~~~C~~~-~~g~C~~-g~~C~~~H~ 26 (27)
T smart00356 3 KTELCKFF-KRGYCPY-GDRCKFAHP 26 (27)
T ss_pred CCCcCcCc-cCCCCCC-CCCcCCCCc
Confidence 35578888 4588888 778888886
No 22
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=95.30 E-value=0.0035 Score=73.16 Aligned_cols=27 Identities=33% Similarity=0.795 Sum_probs=23.6
Q ss_pred CccccccccccCccCCC-CcccccccCC
Q 039602 1917 SKIAVCTKFLKGLCSNS-DCKLTHKVIP 1943 (2132)
Q Consensus 1917 sKvAICKfFLRG~CsnG-SCpFSHepsp 1943 (2132)
.|..+|-+|..|.|..| .|.|+|+...
T Consensus 90 PKSvvCafFk~g~C~KG~kCKFsHdl~~ 117 (343)
T KOG1763|consen 90 PKSVVCAFFKQGTCTKGDKCKFSHDLAV 117 (343)
T ss_pred chHHHHHHHhccCCCCCCcccccchHHH
Confidence 36678999999999999 9999999653
No 23
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=95.20 E-value=0.029 Score=71.13 Aligned_cols=92 Identities=22% Similarity=0.400 Sum_probs=50.6
Q ss_pred ccCCCCcccccccCC------CCCCCCcccccCCCCCCCCCCCCCCCC--C-CCccCccc-----cccCCCCCC-----c
Q 039602 1929 LCSNSDCKLTHKVIP------ERMPDCSYFLQGLCTNKNCPYRHVHVN--P-NASTCEGF-----LKGYCADGD-----E 1989 (2132)
Q Consensus 1929 ~CsnGSCpFSHepsp------eRmPvCrfFLnG~CsNdnCPYsHVK~s--p-KapVCrdF-----lqGyCpKGd-----k 1989 (2132)
.|.+..|.+.|.... .-.+.|.|+.. |.++.|.|.|.... . ..+.|.+- ..-.|..|. .
T Consensus 521 ~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~--Ct~a~Ce~~HPtaa~~~~s~p~k~fa~~~~ks~p~Ck~~~kCtasD 598 (681)
T KOG3702|consen 521 GGSNPDSLSRHSEKKNELTKAKILTRCKYGPA--CTSAECEFAHPTAAENAKSLPNKKFASKCLKSHPGCKFGKKCTASD 598 (681)
T ss_pred ccCCCcchhhCcccccccccceeeccccCCCc--CCchhhhhcCCcchhhhhccccccccccceeccccccccccccccc
Confidence 455556777775321 11246777665 77777777776553 1 11333322 122455543 4
Q ss_pred ccCCCC---------------------ccccCCCCcCcCCCCCCCCCCCCCCCCCCcc
Q 039602 1990 CRKKHS---------------------YVCPTFKATGSCALGAKCRLHHPKSRSNGKK 2026 (2132)
Q Consensus 1990 CpFRHv---------------------~eCPDFa~TGsCprGdkCKFaHperesr~RK 2026 (2132)
|.|.|. .+|.+ .|.|.+ ..|+|.|+..---+.+
T Consensus 599 C~~sH~~~~~pvq~t~ip~~~~~~ti~~~CrY---~pnCrn-m~C~F~HPk~cRf~~~ 652 (681)
T KOG3702|consen 599 CNYSHAGRRIPVQPTRIPPPFPGGTIRGLCRY---RPNCRN-MQCKFYHPKTCRFNTN 652 (681)
T ss_pred CcccccCCCCCCccccCCCCCCCCCcccccee---ccCcCC-ccccccCCcccccccc
Confidence 566664 24544 345776 6899999987644433
No 24
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=95.07 E-value=0.013 Score=72.32 Aligned_cols=50 Identities=38% Similarity=0.865 Sum_probs=35.9
Q ss_pred cCcccccc---CCCCCCcccCCCC-------------ccccCCCCcCcCCCCCCCCC--CCCCCCCCC
Q 039602 1975 TCEGFLKG---YCADGDECRKKHS-------------YVCPTFKATGSCALGAKCRL--HHPKSRSNG 2024 (2132)
Q Consensus 1975 VCrdFlqG---yCpKGdkCpFRHv-------------~eCPDFa~TGsCprGdkCKF--aHperesr~ 2024 (2132)
.|+...+| .|..|++|+|.|. ..||.|...|.|++|-.|+| +|...+.+.
T Consensus 78 LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Dig~~Cp~f~s~G~Cp~G~~CRFl~aHld~~g~~ 145 (614)
T KOG2333|consen 78 LCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDIGPSCPVFESLGFCPYGFKCRFLGAHLDIEGNN 145 (614)
T ss_pred cChHhhcCCCccCcccccccccccHHHHHhccCcccCCccceeeccccCCccceeehhhcccCccccc
Confidence 44444433 4666666666664 57999999999999999999 677776664
No 25
>smart00356 ZnF_C3H1 zinc finger.
Probab=94.92 E-value=0.017 Score=44.81 Aligned_cols=22 Identities=36% Similarity=1.040 Sum_probs=16.6
Q ss_pred ccccCCCCcCcCCCCCCCCCCCC
Q 039602 1996 YVCPTFKATGSCALGAKCRLHHP 2018 (2132)
Q Consensus 1996 ~eCPDFa~TGsCprGdkCKFaHp 2018 (2132)
.+|++| .+|.|.+|+.|+|.|.
T Consensus 5 ~~C~~~-~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 5 ELCKFF-KRGYCPYGDRCKFAHP 26 (27)
T ss_pred CcCcCc-cCCCCCCCCCcCCCCc
Confidence 357777 4788888888888875
No 26
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=94.70 E-value=0.007 Score=69.13 Aligned_cols=31 Identities=26% Similarity=0.611 Sum_probs=26.4
Q ss_pred hhccccCccccccccccccccCCCCCCCCCCCC
Q 039602 1884 RLRLARKRKYCQFFTRFGKCNKDNGKCPYIHDP 1916 (2132)
Q Consensus 1884 R~rl~KKtq~CkfFlRTGkCkKgG~~CpFiHDP 1916 (2132)
|..+..+..+|..|.. +.|.+ |..|.|+|+.
T Consensus 78 ragvdpK~~vcalF~~-~~c~k-g~~ckF~h~~ 108 (299)
T COG5252 78 RAGVDPKTVVCALFLN-KTCAK-GDACKFAHGK 108 (299)
T ss_pred ccccCchhHHHHHhcc-Ccccc-Cchhhhhcch
Confidence 3345678999999987 99999 8999999994
No 27
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=89.99 E-value=0.15 Score=62.31 Aligned_cols=37 Identities=22% Similarity=0.449 Sum_probs=28.4
Q ss_pred ccccCCCCcCcCCCCCCCCCCCCCCCCC--CcccccCCCC
Q 039602 1996 YVCPTFKATGSCALGAKCRLHHPKSRSN--GKKSRRSRKP 2033 (2132)
Q Consensus 1996 ~eCPDFa~TGsCprGdkCKFaHperesr--~RK~r~s~~~ 2033 (2132)
.+|+||+ .|.|.||.+|+|.|+.-..- .|+..+..|.
T Consensus 141 kpC~ffL-eg~CRF~enCRfSHG~~V~lsslr~yq~pD~s 179 (486)
T KOG2185|consen 141 KPCKFFL-EGRCRFGENCRFSHGLDVPLSSLRNYQQPDWS 179 (486)
T ss_pred ccchHhh-ccccccCcccccccCcccchhhcccCCCccHH
Confidence 7899999 89999999999999876532 3555555443
No 28
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=88.09 E-value=0.2 Score=56.78 Aligned_cols=30 Identities=33% Similarity=0.769 Sum_probs=24.5
Q ss_pred CCccccCCCCcCcCCCCCCCCCCCCCCCCC
Q 039602 1994 HSYVCPTFKATGSCALGAKCRLHHPKSRSN 2023 (2132)
Q Consensus 1994 Hv~eCPDFa~TGsCprGdkCKFaHperesr 2023 (2132)
|..+|.+|..+|+|-+|+.|+|.|....-+
T Consensus 140 qpdVCKdyk~TGYCGYGDsCKflH~R~D~K 169 (259)
T COG5152 140 QPDVCKDYKETGYCGYGDSCKFLHDRSDFK 169 (259)
T ss_pred CcccccchhhcccccCCchhhhhhhhhhhh
Confidence 456789998999999999999999766533
No 29
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=87.76 E-value=0.3 Score=59.84 Aligned_cols=59 Identities=24% Similarity=0.472 Sum_probs=37.7
Q ss_pred CCCCCCCCCCCccccccccccC-ccC----CC-CcccccccCCCCCCCCcccccCCCCC-CCCCCCCCCC
Q 039602 1907 NGKCPYIHDPSKIAVCTKFLKG-LCS----NS-DCKLTHKVIPERMPDCSYFLQGLCTN-KNCPYRHVHV 1969 (2132)
Q Consensus 1907 G~~CpFiHDPsKvAICKfFLRG-~Cs----nG-SCpFSHepspeRmPvCrfFLnG~CsN-dnCPYsHVK~ 1969 (2132)
|.+|.+-|+...- +|.+ ++ -|- .+ .-.|+|+ +...|.+|.||+.|.|.. .+|+|.|...
T Consensus 99 GsKcsaph~ss~g-l~yH--na~I~g~E~sarvRVlfl~P-Th~sMkpC~ffLeg~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 99 GSKCSAPHTSSRG-LYYH--NARIIGFEGSARVRVLFLTP-THESMKPCKFFLEGRCRFGENCRFSHGLD 164 (486)
T ss_pred CCcccccccCCcc-ceec--ceeEEeeccccceEEEeecC-cchhhccchHhhccccccCcccccccCcc
Confidence 7888888875433 3322 21 121 12 4556663 445677899999988887 7788888764
No 30
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=87.37 E-value=0.3 Score=60.94 Aligned_cols=49 Identities=24% Similarity=0.659 Sum_probs=41.0
Q ss_pred cCcccccccccc--ccccCCCCCCCCCCCCC-----c----ccccccccc-CccCCC-Ccccc
Q 039602 1889 RKRKYCQFFTRF--GKCNKDNGKCPYIHDPS-----K----IAVCTKFLK-GLCSNS-DCKLT 1938 (2132)
Q Consensus 1889 KKtq~CkfFlRT--GkCkKgG~~CpFiHDPs-----K----vAICKfFLR-G~CsnG-SCpFS 1938 (2132)
....+|+-.... ..|.. |++|+|.||-+ | -..|..|-. |.|..| .|+|.
T Consensus 74 ~~n~LCPsli~g~~~~C~f-~d~Crf~HDi~ayLatK~~Dig~~Cp~f~s~G~Cp~G~~CRFl 135 (614)
T KOG2333|consen 74 VQNRLCPSLIQGDISKCSF-GDNCRFVHDIEAYLATKAPDIGPSCPVFESLGFCPYGFKCRFL 135 (614)
T ss_pred hhhccChHhhcCCCccCcc-cccccccccHHHHHhccCcccCCccceeeccccCCccceeehh
Confidence 467899999986 47999 89999999942 2 356999995 999999 99997
No 31
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=82.64 E-value=0.78 Score=36.95 Aligned_cols=21 Identities=38% Similarity=1.130 Sum_probs=14.5
Q ss_pred CCCcccccC-CCCCCCCCCCCC
Q 039602 1947 PDCSYFLQG-LCTNKNCPYRHV 1967 (2132)
Q Consensus 1947 PvCrfFLnG-~CsNdnCPYsHV 1967 (2132)
|+|.|.+.| .|..++|.|.|.
T Consensus 1 ~lC~yEl~Gg~Cnd~~C~~QHf 22 (23)
T PF10650_consen 1 PLCPYELTGGVCNDPDCEFQHF 22 (23)
T ss_pred CCCccccCCCeeCCCCCCcccc
Confidence 457777765 777777777775
No 32
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=81.71 E-value=0.23 Score=57.40 Aligned_cols=26 Identities=35% Similarity=0.733 Sum_probs=22.4
Q ss_pred CccccccccccCccCCC-CcccccccC
Q 039602 1917 SKIAVCTKFLKGLCSNS-DCKLTHKVI 1942 (2132)
Q Consensus 1917 sKvAICKfFLRG~CsnG-SCpFSHeps 1942 (2132)
.|..+|--|+.+.|..| .|.|+|...
T Consensus 83 pK~~vcalF~~~~c~kg~~ckF~h~~e 109 (299)
T COG5252 83 PKTVVCALFLNKTCAKGDACKFAHGKE 109 (299)
T ss_pred chhHHHHHhccCccccCchhhhhcchH
Confidence 35778999999999988 999999843
No 33
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=80.67 E-value=1.2 Score=33.98 Aligned_cols=19 Identities=32% Similarity=0.754 Sum_probs=14.1
Q ss_pred cccCCCCcCcCCCCCCCCCCCC
Q 039602 1997 VCPTFKATGSCALGAKCRLHHP 2018 (2132)
Q Consensus 1997 eCPDFa~TGsCprGdkCKFaHp 2018 (2132)
.|.+|.. |.+|+.|.|.|+
T Consensus 1 ~Ck~~~~---C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN---CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC---CCCCCcCccCCc
Confidence 3776662 888888888885
No 34
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=79.42 E-value=1.2 Score=33.97 Aligned_cols=19 Identities=32% Similarity=0.945 Sum_probs=12.5
Q ss_pred ccccccccccccCCCCCCCCCCC
Q 039602 1893 YCQFFTRFGKCNKDNGKCPYIHD 1915 (2132)
Q Consensus 1893 ~CkfFlRTGkCkKgG~~CpFiHD 1915 (2132)
+|+||.. |.+ ++.|+|.|.
T Consensus 1 ~Ck~~~~---C~~-~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN---CTN-GDNCPFSHP 19 (19)
T ss_pred CCcCcCC---CCC-CCcCccCCc
Confidence 4777753 777 567777773
No 35
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.15 E-value=0.74 Score=54.89 Aligned_cols=26 Identities=35% Similarity=0.897 Sum_probs=19.9
Q ss_pred CccccCCCCcCcCCCCCCCCCCCCCC
Q 039602 1995 SYVCPTFKATGSCALGAKCRLHHPKS 2020 (2132)
Q Consensus 1995 v~eCPDFa~TGsCprGdkCKFaHper 2020 (2132)
..+|++|..||+|-+|+.|+|.|..-
T Consensus 186 pDicKdykeTgycg~gdSckFlh~r~ 211 (313)
T KOG1813|consen 186 PDICKDYKETGYCGYGDSCKFLHDRS 211 (313)
T ss_pred chhhhhhHhhCcccccchhhhhhhhh
Confidence 46788888888888888888888543
No 36
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=65.69 E-value=2.5 Score=48.39 Aligned_cols=23 Identities=35% Similarity=0.931 Sum_probs=19.7
Q ss_pred ccCccc-cccCCCCCCcccCCCCc
Q 039602 1974 STCEGF-LKGYCADGDECRKKHSY 1996 (2132)
Q Consensus 1974 pVCrdF-lqGyCpKGdkCpFRHv~ 1996 (2132)
.+|.+| ..|||-+|+.|+|.|..
T Consensus 142 dVCKdyk~TGYCGYGDsCKflH~R 165 (259)
T COG5152 142 DVCKDYKETGYCGYGDSCKFLHDR 165 (259)
T ss_pred ccccchhhcccccCCchhhhhhhh
Confidence 578899 57999999999999973
No 37
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=65.51 E-value=3.4 Score=33.51 Aligned_cols=19 Identities=37% Similarity=1.057 Sum_probs=10.6
Q ss_pred cccccccC-ccCCCCccccc
Q 039602 1921 VCTKFLKG-LCSNSDCKLTH 1939 (2132)
Q Consensus 1921 ICKfFLRG-~CsnGSCpFSH 1939 (2132)
+|.|.+.| .|...+|.|.|
T Consensus 2 lC~yEl~Gg~Cnd~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCNDPDCEFQH 21 (23)
T ss_pred CCccccCCCeeCCCCCCccc
Confidence 45555554 55555555555
No 38
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.94 E-value=4.7 Score=48.52 Aligned_cols=26 Identities=31% Similarity=0.723 Sum_probs=21.4
Q ss_pred ccCccc-cccCCCCCCcccCCCCcccc
Q 039602 1974 STCEGF-LKGYCADGDECRKKHSYVCP 1999 (2132)
Q Consensus 1974 pVCrdF-lqGyCpKGdkCpFRHv~eCP 1999 (2132)
-+|.+| ..|||-+|+.|+|.|.+.|.
T Consensus 187 DicKdykeTgycg~gdSckFlh~r~Dy 213 (313)
T KOG1813|consen 187 DICKDYKETGYCGYGDSCKFLHDRSDY 213 (313)
T ss_pred hhhhhhHhhCcccccchhhhhhhhhhc
Confidence 578888 57999999999999987764
No 39
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=48.32 E-value=8 Score=45.87 Aligned_cols=28 Identities=21% Similarity=0.844 Sum_probs=24.3
Q ss_pred ccCccccccccccccccCCCCCCCCCCCC
Q 039602 1888 ARKRKYCQFFTRFGKCNKDNGKCPYIHDP 1916 (2132)
Q Consensus 1888 ~KKtq~CkfFlRTGkCkKgG~~CpFiHDP 1916 (2132)
.+...-|.||.++|.|+. |..|.-.|..
T Consensus 12 ekdKv~c~fy~k~gacR~-gdrcsR~h~k 39 (260)
T KOG2202|consen 12 EKDKVNCSFYFKIGACRH-GDRCSRLHEK 39 (260)
T ss_pred cccccccchHHhhccccc-ccHHHHhhcc
Confidence 566778999999999999 8999999963
No 40
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.92 E-value=9.8 Score=46.77 Aligned_cols=23 Identities=22% Similarity=0.769 Sum_probs=21.6
Q ss_pred cccccccccccccCCCCCCCCCCCC
Q 039602 1892 KYCQFFTRFGKCNKDNGKCPYIHDP 1916 (2132)
Q Consensus 1892 q~CkfFlRTGkCkKgG~~CpFiHDP 1916 (2132)
.+|+||.+ |.|.. |..|+|.|..
T Consensus 9 tic~~~~~-g~c~~-g~~cr~~h~~ 31 (344)
T KOG1039|consen 9 TICKYYQK-GNCKF-GDLCRLSHSL 31 (344)
T ss_pred hhhhhccc-ccccc-cceeeeeccC
Confidence 89999999 99999 8999999974
No 41
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.84 E-value=26 Score=43.25 Aligned_cols=27 Identities=33% Similarity=0.669 Sum_probs=22.2
Q ss_pred ccccCCCC-cCcCCCCCCCCCCCCCCCC
Q 039602 1996 YVCPTFKA-TGSCALGAKCRLHHPKSRS 2022 (2132)
Q Consensus 1996 ~eCPDFa~-TGsCprGdkCKFaHperes 2022 (2132)
..|.+|.. .|.||+|..|.|.|-....
T Consensus 250 ~~c~yf~~~~g~cPf~s~~~y~h~~~~~ 277 (344)
T KOG1039|consen 250 KDCKYFSQGLGSCPFGSKCFYKHLLPSG 277 (344)
T ss_pred cchhhhcCCCCCCCCCCccccccccccc
Confidence 67888865 7889999999999977653
No 42
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=34.05 E-value=20 Score=44.24 Aligned_cols=23 Identities=39% Similarity=0.834 Sum_probs=13.0
Q ss_pred ccCccccccCCCCCCcccCCCCc
Q 039602 1974 STCEGFLKGYCADGDECRKKHSY 1996 (2132)
Q Consensus 1974 pVCrdFlqGyCpKGdkCpFRHv~ 1996 (2132)
.+|.+|..|.|.+|++|+|+|..
T Consensus 162 ~Icsf~v~geckRG~ec~yrhEk 184 (377)
T KOG0153|consen 162 HICSFFVKGECKRGAECPYRHEK 184 (377)
T ss_pred ccccceeeccccccccccccccC
Confidence 35555555555555555555553
No 43
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=33.26 E-value=16 Score=44.72 Aligned_cols=24 Identities=42% Similarity=0.953 Sum_probs=13.6
Q ss_pred cccccccC-ccCCCCcccccccCCC
Q 039602 1921 VCTKFLKG-LCSNSDCKLTHKVIPE 1944 (2132)
Q Consensus 1921 ICKfFLRG-~CsnGSCpFSHepspe 1944 (2132)
.|..||++ .|.+++|.|.|++.++
T Consensus 204 YCtsYLRn~~CpNp~CMyLHEpg~e 228 (480)
T COG5175 204 YCTSYLRNAVCPNPDCMYLHEPGPE 228 (480)
T ss_pred HHHHHHcCCCCCCCCeeeecCCCcc
Confidence 35555553 4666666666665543
No 44
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=29.90 E-value=26 Score=43.37 Aligned_cols=28 Identities=32% Similarity=1.013 Sum_probs=22.5
Q ss_pred cccCccccccccccccccCCCCCCCCCCCC
Q 039602 1887 LARKRKYCQFFTRFGKCNKDNGKCPYIHDP 1916 (2132)
Q Consensus 1887 l~KKtq~CkfFlRTGkCkKgG~~CpFiHDP 1916 (2132)
......+|-||.. |.|++ |..|+|.|..
T Consensus 157 krn~p~Icsf~v~-geckR-G~ec~yrhEk 184 (377)
T KOG0153|consen 157 KRNRPHICSFFVK-GECKR-GAECPYRHEK 184 (377)
T ss_pred cCCCCccccceee-ccccc-cccccccccC
Confidence 3456778999987 89988 8899999974
Done!