Query 039602
Match_columns 2132
No_of_seqs 254 out of 1267
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 19:31:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039602.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039602hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d9n_A Cleavage and polyadenyl 99.3 1.3E-12 4.4E-17 122.4 3.8 64 1919-1982 10-75 (77)
2 2d9n_A Cleavage and polyadenyl 99.2 1.7E-11 5.8E-16 114.9 4.6 67 1888-1956 7-76 (77)
3 2rhk_C Cleavage and polyadenyl 98.9 2.3E-10 7.8E-15 106.7 2.2 54 1917-1970 14-69 (72)
4 2e5s_A Otthump00000018578; ZF- 98.8 4.9E-10 1.7E-14 110.0 1.2 59 1911-1969 12-79 (98)
5 3d2q_A Muscleblind-like protei 98.7 2E-09 7E-14 99.5 1.4 48 1891-1940 6-63 (70)
6 3d2q_A Muscleblind-like protei 98.7 2.8E-09 9.7E-14 98.5 2.0 53 1917-1969 4-65 (70)
7 2rhk_C Cleavage and polyadenyl 98.7 3E-09 1E-13 99.2 1.9 55 1887-1943 12-69 (72)
8 2rpp_A Muscleblind-like protei 98.7 3.6E-09 1.2E-13 102.7 2.5 63 1907-1969 4-74 (89)
9 2e5s_A Otthump00000018578; ZF- 98.7 1.9E-09 6.5E-14 105.9 -0.8 54 1887-1942 16-79 (98)
10 3d2n_A Muscleblind-like protei 98.6 6.8E-09 2.3E-13 99.6 2.2 50 1890-1941 8-65 (83)
11 2cqe_A KIAA1064 protein; CCCH 98.6 5E-09 1.7E-13 102.7 1.1 59 1887-1950 9-69 (98)
12 2cqe_A KIAA1064 protein; CCCH 98.6 1.5E-08 5.2E-13 99.3 4.1 58 1964-2021 3-62 (98)
13 3d2n_A Muscleblind-like protei 98.6 1.6E-08 5.4E-13 97.1 3.3 52 1918-1969 8-66 (83)
14 2rpp_A Muscleblind-like protei 98.6 1.4E-08 4.7E-13 98.7 1.8 52 1889-1942 15-74 (89)
15 1m9o_A Tristetraproline; Cys3H 98.5 3.7E-08 1.3E-12 90.9 2.9 26 1996-2021 51-76 (77)
16 1m9o_A Tristetraproline; Cys3H 98.4 7.5E-08 2.6E-12 88.9 3.2 54 1887-1941 8-74 (77)
17 3u9g_A Zinc finger CCCH-type a 97.5 8.1E-05 2.8E-09 82.6 5.4 103 1890-2022 73-200 (229)
18 3u9g_A Zinc finger CCCH-type a 97.3 3.6E-05 1.2E-09 85.4 0.5 96 1891-1997 89-198 (229)
19 2lhn_A Nuclear polyadenylated 96.4 3.8E-05 1.3E-09 73.9 0.0 66 1889-1968 7-72 (80)
20 2lhn_A Nuclear polyadenylated 95.8 0.0002 6.7E-09 69.0 0.0 62 1948-2021 11-74 (80)
21 2d9m_A Zinc finger CCCH-type d 94.2 0.0066 2.3E-07 57.4 -0.6 28 1996-2024 21-48 (69)
22 2fc6_A Nuclear, target of EGR1 94.2 0.028 9.5E-07 50.4 3.3 39 1962-2000 8-48 (50)
23 2d9m_A Zinc finger CCCH-type d 89.0 0.17 5.8E-06 48.1 2.3 23 1892-1916 21-43 (69)
24 2fc6_A Nuclear, target of EGR1 87.5 0.16 5.6E-06 45.7 1.1 27 1994-2020 19-45 (50)
25 3u1l_A PRE-mRNA-splicing facto 81.6 0.2 6.9E-06 56.1 -1.2 21 1975-1995 72-92 (240)
26 3u1l_A PRE-mRNA-splicing facto 80.2 0.3 1E-05 54.7 -0.5 26 1995-2021 70-95 (240)
27 3v33_A Ribonuclease ZC3H12A; r 35.8 7.7 0.00026 43.7 0.0 19 2006-2024 200-218 (223)
28 2eyu_A Twitching motility prot 27.2 15 0.0005 41.0 0.4 27 76-102 234-260 (261)
No 1
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.3e-12 Score=122.40 Aligned_cols=64 Identities=30% Similarity=0.806 Sum_probs=34.4
Q ss_pred cccccccccCccCCC-CcccccccCCCCCCCCccccc-CCCCCCCCCCCCCCCCCCCccCcccccc
Q 039602 1919 IAVCTKFLKGLCSNS-DCKLTHKVIPERMPDCSYFLQ-GLCTNKNCPYRHVHVNPNASTCEGFLKG 1982 (2132)
Q Consensus 1919 vAICKfFLRG~CsnG-SCpFSHepspeRmPvCrfFLn-G~CsNdnCPYsHVK~spKapVCrdFlqG 1982 (2132)
..+|++|++|.|.+| .|+|+|+....++++|+||++ |.|.++.|+|.|+.+..++++|++|++|
T Consensus 10 ~~~C~~fl~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~~~~C~f~H~~~~~~~~~C~~f~~g 75 (77)
T 2d9n_A 10 TVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWSGPS 75 (77)
T ss_dssp TSBCHHHHTTCCSCTTSSSSBCSCCTTTSCBCHHHHHTCCCCCSSCSSBCCCTTSSCSSSSCCTTT
T ss_pred ceeCHhHccCcCCCCCCCCCccccccCcCCCCcccCCCCccCCCCeeccCCCccccCCCCcccccC
Confidence 344444444555444 455555544445555655555 5665556666665555555555555544
No 2
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.7e-11 Score=114.90 Aligned_cols=67 Identities=28% Similarity=0.675 Sum_probs=59.9
Q ss_pred ccCccccccccccccccCCCCCCCCCCCC--Ccccccccccc-CccCCCCcccccccCCCCCCCCcccccCC
Q 039602 1888 ARKRKYCQFFTRFGKCNKDNGKCPYIHDP--SKIAVCTKFLK-GLCSNSDCKLTHKVIPERMPDCSYFLQGL 1956 (2132)
Q Consensus 1888 ~KKtq~CkfFlRTGkCkKgG~~CpFiHDP--sKvAICKfFLR-G~CsnGSCpFSHepspeRmPvCrfFLnG~ 1956 (2132)
..+.++|+||++ |.|++ |+.|+|+|+. .+.++|++|++ |.|.+..|+|+|.....+.++|.+|.+|.
T Consensus 7 ~~k~~~C~~fl~-G~C~~-G~~C~fsH~~~~~~~~~C~~f~~~G~C~~~~C~f~H~~~~~~~~~C~~f~~g~ 76 (77)
T 2d9n_A 7 GEKTVVCKHWLR-GLCKK-GDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWSGPSS 76 (77)
T ss_dssp CCTTSBCHHHHT-TCCSC-TTSSSSBCSCCTTTSCBCHHHHHTCCCCCSSCSSBCCCTTSSCSSSSCCTTTC
T ss_pred CCcceeCHhHcc-CcCCC-CCCCCCccccccCcCCCCcccCCCCccCCCCeeccCCCccccCCCCcccccCC
Confidence 356789999999 99999 8999999985 46789999999 99996699999998888899999999874
No 3
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.92 E-value=2.3e-10 Score=106.69 Aligned_cols=54 Identities=33% Similarity=0.931 Sum_probs=43.6
Q ss_pred CccccccccccCccCCC-CcccccccCCCCCCCCccccc-CCCCCCCCCCCCCCCC
Q 039602 1917 SKIAVCTKFLKGLCSNS-DCKLTHKVIPERMPDCSYFLQ-GLCTNKNCPYRHVHVN 1970 (2132)
Q Consensus 1917 sKvAICKfFLRG~CsnG-SCpFSHepspeRmPvCrfFLn-G~CsNdnCPYsHVK~s 1970 (2132)
.+..+|++|++|.|.+| .|+|+|++.+.++++|+||++ |.|.++.|+|.|+.+.
T Consensus 14 ~k~~vCk~fl~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~~~~C~y~H~~p~ 69 (72)
T 2rhk_C 14 EKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMSECYFYSKFGECSNKECPFLHIDPE 69 (72)
T ss_dssp CCCSBCHHHHTTCCCCGGGSSSBCSCCTTSCCBCHHHHHHSCCSBTTCCSBCCCCC
T ss_pred CcCeeCHHHhcCCCCCCCCCCCccccccccCCcccccCCCCCCCCCCeeccCCCcc
Confidence 45677888888888887 788888877778888888887 8888888888888754
No 4
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=4.9e-10 Score=110.01 Aligned_cols=59 Identities=25% Similarity=0.683 Sum_probs=48.5
Q ss_pred CCCCCCCccccccccccCccCCC--CcccccccC-------CCCCCCCcccccCCCCCCCCCCCCCCC
Q 039602 1911 PYIHDPSKIAVCTKFLKGLCSNS--DCKLTHKVI-------PERMPDCSYFLQGLCTNKNCPYRHVHV 1969 (2132)
Q Consensus 1911 pFiHDPsKvAICKfFLRG~CsnG--SCpFSHeps-------peRmPvCrfFLnG~CsNdnCPYsHVK~ 1969 (2132)
.-.|+++|..+|++|++|.|.+| .|+|+|++. +.++++|.+|++|.|.+..|+|.|+..
T Consensus 12 ~K~~~~~k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~ 79 (98)
T 2e5s_A 12 QKLLRTDKLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPPA 79 (98)
T ss_dssp CCCCCSSEEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHHTCCCCTTCCSBCCCH
T ss_pred ccccChhhhhhhHHHhcCcCCCCCCCCCCcCCchhccccccCCccccchhhccCCCCCCCcCccCChH
Confidence 34557788899999999999988 599999874 356788999999999999999999864
No 5
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.73 E-value=2e-09 Score=99.46 Aligned_cols=48 Identities=33% Similarity=0.902 Sum_probs=25.7
Q ss_pred ccccccccccccccCCCC-CCCCCCCCC---------ccccccccccCccCCCCcccccc
Q 039602 1891 RKYCQFFTRFGKCNKDNG-KCPYIHDPS---------KIAVCTKFLKGLCSNSDCKLTHK 1940 (2132)
Q Consensus 1891 tq~CkfFlRTGkCkKgG~-~CpFiHDPs---------KvAICKfFLRG~CsnGSCpFSHe 1940 (2132)
..+|++|++ |.|.+ |+ .|+|+|+++ ++.+|++|++|.|.++.|+|.|.
T Consensus 6 ~~vC~~f~~-G~C~r-g~~~C~f~H~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~ 63 (70)
T 3d2q_A 6 LEVCREYQR-GNCNR-GENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHP 63 (70)
T ss_dssp EEBCHHHHT-TCCSS-CTTTCSSBCCCTTSCCBTTTTEEEBCHHHHTTCCCCTTCCSBCC
T ss_pred chhCHHHhc-CCCCC-CCCCCCCccCcccccccccCCcceeccccCcCCCCCCCcCeeCC
Confidence 445666655 66666 45 366666532 34445555555555445555554
No 6
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.71 E-value=2.8e-09 Score=98.51 Aligned_cols=53 Identities=25% Similarity=0.773 Sum_probs=46.9
Q ss_pred CccccccccccCccCCC--Cccccccc-------CCCCCCCCcccccCCCCCCCCCCCCCCC
Q 039602 1917 SKIAVCTKFLKGLCSNS--DCKLTHKV-------IPERMPDCSYFLQGLCTNKNCPYRHVHV 1969 (2132)
Q Consensus 1917 sKvAICKfFLRG~CsnG--SCpFSHep-------speRmPvCrfFLnG~CsNdnCPYsHVK~ 1969 (2132)
.+..+|++|++|.|.+| .|+|+|.+ .+.++++|.+|++|.|.+..|+|.|...
T Consensus 4 ~k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~ 65 (70)
T 3d2q_A 4 DRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPA 65 (70)
T ss_dssp CEEEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHTTCCCCTTCCSBCCCH
T ss_pred ccchhCHHHhcCCCCCCCCCCCCccCcccccccccCCcceeccccCcCCCCCCCcCeeCCHH
Confidence 56789999999999998 59999975 3456889999999999999999999864
No 7
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.71 E-value=3e-09 Score=99.25 Aligned_cols=55 Identities=31% Similarity=0.715 Sum_probs=48.7
Q ss_pred cccCccccccccccccccCCCCCCCCCCCC--Ccccccccccc-CccCCCCcccccccCC
Q 039602 1887 LARKRKYCQFFTRFGKCNKDNGKCPYIHDP--SKIAVCTKFLK-GLCSNSDCKLTHKVIP 1943 (2132)
Q Consensus 1887 l~KKtq~CkfFlRTGkCkKgG~~CpFiHDP--sKvAICKfFLR-G~CsnGSCpFSHepsp 1943 (2132)
..++..+|+||++ |.|.+ |+.|+|+|+. .+.++|++|++ |.|.+..|+|.|...+
T Consensus 12 ~~~k~~vCk~fl~-G~C~~-G~~C~fsH~~~~~~~~~C~~f~~~G~C~~~~C~y~H~~p~ 69 (72)
T 2rhk_C 12 SGEKTVVCKHWLR-GLCKK-GDQCEFLHEYDMTKMSECYFYSKFGECSNKECPFLHIDPE 69 (72)
T ss_dssp SCCCCSBCHHHHT-TCCCC-GGGSSSBCSCCTTSCCBCHHHHHHSCCSBTTCCSBCCCCC
T ss_pred CCCcCeeCHHHhc-CCCCC-CCCCCCccccccccCCcccccCCCCCCCCCCeeccCCCcc
Confidence 3467889999999 99999 8999999985 57889999999 9999999999998654
No 8
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.71 E-value=3.6e-09 Score=102.74 Aligned_cols=63 Identities=32% Similarity=0.661 Sum_probs=49.5
Q ss_pred CCCCCCCCCC-CccccccccccCccCCC--CcccccccCC-----CCCCCCcccccCCCCCCCCCCCCCCC
Q 039602 1907 NGKCPYIHDP-SKIAVCTKFLKGLCSNS--DCKLTHKVIP-----ERMPDCSYFLQGLCTNKNCPYRHVHV 1969 (2132)
Q Consensus 1907 G~~CpFiHDP-sKvAICKfFLRG~CsnG--SCpFSHepsp-----eRmPvCrfFLnG~CsNdnCPYsHVK~ 1969 (2132)
|..+++.++. .+..+|++|++|.|.++ .|+|+|.+.. .++++|.+|++|.|.++.|+|.|...
T Consensus 4 ~~~~~~~~~~~~~~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~~~~~~vC~dflkG~C~r~~Cky~H~~~ 74 (89)
T 2rpp_A 4 GSSGPVRDTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSLKGRCSRENCKYLHPPT 74 (89)
T ss_dssp CCCSCCCSCSSSEECBCHHHHHTCCCCCTTTSSSBCCCSSSCCBTTBEEBCHHHHHTCCCCTTCCSBCCCH
T ss_pred cccccccCCCcchhhhchHHhcCCCCCCCCCCCCcCCCccccccCCceeeehhhhhCcCCCCCcceecCHH
Confidence 4567777775 56778888888888887 7888887653 36788888888999888899988764
No 9
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=1.9e-09 Score=105.91 Aligned_cols=54 Identities=30% Similarity=0.761 Sum_probs=47.4
Q ss_pred cccCccccccccccccccCCCC-CCCCCCCC---------CccccccccccCccCCCCcccccccC
Q 039602 1887 LARKRKYCQFFTRFGKCNKDNG-KCPYIHDP---------SKIAVCTKFLKGLCSNSDCKLTHKVI 1942 (2132)
Q Consensus 1887 l~KKtq~CkfFlRTGkCkKgG~-~CpFiHDP---------sKvAICKfFLRG~CsnGSCpFSHeps 1942 (2132)
...+..+|++|++ |.|.+ |+ .|+|+|++ .++.+|++|++|.|.++.|+|.|.+.
T Consensus 16 ~~~k~~VCr~Flr-G~C~r-gd~~C~FsH~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~ 79 (98)
T 2e5s_A 16 RTDKLEVCREFQR-GNCAR-GETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPPA 79 (98)
T ss_dssp CSSEEEBCSHHHH-TCCSS-HHHHCSSBCCSSCCSCCTTTCEEEBCHHHHHTCCCCTTCCSBCCCH
T ss_pred ChhhhhhhHHHhc-CcCCC-CCCCCCCcCCchhccccccCCccccchhhccCCCCCCCcCccCChH
Confidence 3456779999999 99999 77 79999996 36789999999999999999999864
No 10
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.64 E-value=6.8e-09 Score=99.55 Aligned_cols=50 Identities=32% Similarity=0.794 Sum_probs=29.9
Q ss_pred CccccccccccccccCCCC-CCCCCCCCC-------ccccccccccCccCCCCccccccc
Q 039602 1890 KRKYCQFFTRFGKCNKDNG-KCPYIHDPS-------KIAVCTKFLKGLCSNSDCKLTHKV 1941 (2132)
Q Consensus 1890 Ktq~CkfFlRTGkCkKgG~-~CpFiHDPs-------KvAICKfFLRG~CsnGSCpFSHep 1941 (2132)
+..+|++|++ |.|.+ |+ .|+|+|++. ++.+|.+|++|.|.++.|+|.|.+
T Consensus 8 ~~~VCr~Flr-G~C~r-~d~~C~f~H~~~~~~~~~~~~~vC~dflkG~C~r~~C~y~H~~ 65 (83)
T 3d2n_A 8 TLEVCREFQR-GTCSR-PDTECKFAHPSKSCQVENGRVIACFDSLKGRCSRENCKYLHPP 65 (83)
T ss_dssp EEEBCTTGGG-TCCCS-CTTTCSSBCCCTTCCEETTEEECCHHHHTTCCCCSSCSSCCCC
T ss_pred cchhcHHHhc-CCCCC-CCCCCCCcCCCccccccCCceeehhHhhhccccCCCcceeCCh
Confidence 3456777777 77777 43 777777753 245555555555555555555543
No 11
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.63 E-value=5e-09 Score=102.71 Aligned_cols=59 Identities=32% Similarity=0.806 Sum_probs=45.5
Q ss_pred cccCccccccccccccccCCCCCCCCCCCCCccccccccc-cCccCCC-CcccccccCCCCCCCCc
Q 039602 1887 LARKRKYCQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFL-KGLCSNS-DCKLTHKVIPERMPDCS 1950 (2132)
Q Consensus 1887 l~KKtq~CkfFlRTGkCkKgG~~CpFiHDPsKvAICKfFL-RG~CsnG-SCpFSHepspeRmPvCr 1950 (2132)
+.++..+|+||.+ |.|.+ |+.|+|+|+ ..+|++|+ .|.|.+| .|+|+|.+....++.|.
T Consensus 9 ~~~k~~lC~~f~~-G~C~~-G~~C~f~H~---~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~l 69 (98)
T 2cqe_A 9 LPKKRELCKFYIT-GFCAR-AENCPYMHG---DFPCKLYHTTGNCINGDDCMFSHDPLTEETRELL 69 (98)
T ss_dssp CSCCCSBCTTTTT-TCCSC-STTCSSBSS---SSBCSHHHHTSCCSSCTTCSSBCCCCCHHHHHHH
T ss_pred CCCCCccCccccc-CcCCC-CCCCCCCCC---CCcCcCcccCCcCCCCCCCcccCCCCcccchhHH
Confidence 4467888999975 99998 788999998 67788886 7888887 88888886554444443
No 12
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.62 E-value=1.5e-08 Score=99.34 Aligned_cols=58 Identities=22% Similarity=0.599 Sum_probs=43.8
Q ss_pred CCCCCCC-CCCccCccccccCCCCCCcccCCCC-ccccCCCCcCcCCCCCCCCCCCCCCC
Q 039602 1964 YRHVHVN-PNASTCEGFLKGYCADGDECRKKHS-YVCPTFKATGSCALGAKCRLHHPKSR 2021 (2132)
Q Consensus 1964 YsHVK~s-pKapVCrdFlqGyCpKGdkCpFRHv-~eCPDFa~TGsCprGdkCKFaHpere 2021 (2132)
|.|.... .+..+|++|+.|.|.+|++|+|.|. .+|++|..+|.|++|+.|+|.|....
T Consensus 3 ~sH~~~~~~k~~lC~~f~~G~C~~G~~C~f~H~~~~C~~f~~~G~C~~G~~C~f~H~~~~ 62 (98)
T 2cqe_A 3 SGSSGELPKKRELCKFYITGFCARAENCPYMHGDFPCKLYHTTGNCINGDDCMFSHDPLT 62 (98)
T ss_dssp CCCCCCCSCCCSBCTTTTTTCCSCSTTCSSBSSSSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred ccccCCCCCCCccCcccccCcCCCCCCCCCCCCCCcCcCcccCCcCCCCCCCcccCCCCc
Confidence 4454432 4566777777777778888888884 78999977899999999999998653
No 13
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.60 E-value=1.6e-08 Score=97.05 Aligned_cols=52 Identities=35% Similarity=0.767 Sum_probs=46.8
Q ss_pred ccccccccccCccCCC--CcccccccC-----CCCCCCCcccccCCCCCCCCCCCCCCC
Q 039602 1918 KIAVCTKFLKGLCSNS--DCKLTHKVI-----PERMPDCSYFLQGLCTNKNCPYRHVHV 1969 (2132)
Q Consensus 1918 KvAICKfFLRG~CsnG--SCpFSHeps-----peRmPvCrfFLnG~CsNdnCPYsHVK~ 1969 (2132)
++.+|++|++|.|.++ .|+|+|.+. ..++++|.+|++|.|.++.|+|.|...
T Consensus 8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~~~~~~~vC~dflkG~C~r~~C~y~H~~~ 66 (83)
T 3d2n_A 8 TLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRCSRENCKYLHPPP 66 (83)
T ss_dssp EEEBCTTGGGTCCCSCTTTCSSBCCCTTCCEETTEEECCHHHHTTCCCCSSCSSCCCCH
T ss_pred cchhcHHHhcCCCCCCCCCCCCcCCCccccccCCceeehhHhhhccccCCCcceeCChH
Confidence 5789999999999998 999999975 346789999999999999999999864
No 14
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.56 E-value=1.4e-08 Score=98.68 Aligned_cols=52 Identities=33% Similarity=0.811 Sum_probs=46.5
Q ss_pred cCccccccccccccccCCCC-CCCCCCCCC-------ccccccccccCccCCCCcccccccC
Q 039602 1889 RKRKYCQFFTRFGKCNKDNG-KCPYIHDPS-------KIAVCTKFLKGLCSNSDCKLTHKVI 1942 (2132)
Q Consensus 1889 KKtq~CkfFlRTGkCkKgG~-~CpFiHDPs-------KvAICKfFLRG~CsnGSCpFSHeps 1942 (2132)
.+..+|++|++ |.|.+ |+ .|+|+|++. ++.+|.+|++|.|.++.|+|.|.+.
T Consensus 15 ~~~~VCrdFlr-G~C~r-~d~~CrfsH~~~~~~v~~~~~~vC~dflkG~C~r~~Cky~H~~~ 74 (89)
T 2rpp_A 15 LTLEVCRQFQR-GTCSR-SDEECKFAHPPKSCQVENGRVIACFDSLKGRCSRENCKYLHPPT 74 (89)
T ss_dssp SEECBCHHHHH-TCCCC-CTTTSSSBCCCSSSCCBTTBEEBCHHHHHTCCCCTTCCSBCCCH
T ss_pred chhhhchHHhc-CCCCC-CCCCCCCcCCCccccccCCceeeehhhhhCcCCCCCcceecCHH
Confidence 34678999999 99999 65 999999875 6899999999999999999999864
No 15
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.50 E-value=3.7e-08 Score=90.92 Aligned_cols=26 Identities=31% Similarity=0.839 Sum_probs=0.0
Q ss_pred ccccCCCCcCcCCCCCCCCCCCCCCC
Q 039602 1996 YVCPTFKATGSCALGAKCRLHHPKSR 2021 (2132)
Q Consensus 1996 ~eCPDFa~TGsCprGdkCKFaHpere 2021 (2132)
.+|++|..+|.|++|..|+|+|...+
T Consensus 51 ~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 51 ELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp --------------------------
T ss_pred CcccchhhCcCCCCcCcCCCCCCCCC
Confidence 47998888999999999999998754
No 16
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.44 E-value=7.5e-08 Score=88.92 Aligned_cols=54 Identities=26% Similarity=0.706 Sum_probs=26.3
Q ss_pred cccCccccccccccccccCCCCCCCCCCCCCc-----------cccccccc-cCccCCC-Cccccccc
Q 039602 1887 LARKRKYCQFFTRFGKCNKDNGKCPYIHDPSK-----------IAVCTKFL-KGLCSNS-DCKLTHKV 1941 (2132)
Q Consensus 1887 l~KKtq~CkfFlRTGkCkKgG~~CpFiHDPsK-----------vAICKfFL-RG~CsnG-SCpFSHep 1941 (2132)
...++.+|++|+++|.|.+ |..|+|+|+... ..+|++|+ .|.|.+| .|+|.|..
T Consensus 8 ~~~kt~~C~~f~~~G~C~~-G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~ 74 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRY-GAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNP 74 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTT-TTTCSSCSSSCCGGGTC-------------------------------
T ss_pred CCccchhCHHhhhCCCcCC-CCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCC
Confidence 3567899999987799999 899999998632 34676555 5777776 77777754
No 17
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.47 E-value=8.1e-05 Score=82.63 Aligned_cols=103 Identities=25% Similarity=0.614 Sum_probs=63.3
Q ss_pred CccccccccccccccCCCCCCCCCCCCCccccccccccCccC----CC-CcccccccCCC-CC--------------CCC
Q 039602 1890 KRKYCQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCS----NS-DCKLTHKVIPE-RM--------------PDC 1949 (2132)
Q Consensus 1890 Ktq~CkfFlRTGkCkKgG~~CpFiHDPsKvAICKfFLRG~Cs----nG-SCpFSHepspe-Rm--------------PvC 1949 (2132)
...+|+ + +.|.. .|.-.| +|++|+-|.|. .+ .|+|+|+.... +. .+|
T Consensus 73 ~lRLC~---~-~~C~g---~C~~LH------LCK~~l~G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~ 139 (229)
T 3u9g_A 73 RARVCR---R-KYCQR---PCDSLH------LCKLNLLGRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELA 139 (229)
T ss_dssp SCCBCC---C-TTCCS---SCCSBC------CCHHHHTTCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHH
T ss_pred cceeeC---C-CCCCc---ccccee------echhhhcCcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhh
Confidence 355784 2 55763 387777 69999999993 22 79999986421 10 011
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCccCccccc-----cCCCCCCcccCCCCccccCCCCcCcCCCCCCCCCCCCCCCC
Q 039602 1950 SYFLQGLCTNKNCPYRHVHVNPNASTCEGFLK-----GYCADGDECRKKHSYVCPTFKATGSCALGAKCRLHHPKSRS 2022 (2132)
Q Consensus 1950 rfFLnG~CsNdnCPYsHVK~spKapVCrdFlq-----GyCpKGdkCpFRHv~eCPDFa~TGsCprGdkCKFaHperes 2022 (2132)
.-.++ ..+..--++|.+| . |.|..++.|...|+ |..|. .|.|.+ ..|+..|...+.
T Consensus 140 ~LLLQ------------nDp~lLPeiC~~Y-kG~g~~g~C~~~~~C~kLHI--C~~Fl-~G~C~f-~~CkRsH~~~~~ 200 (229)
T 3u9g_A 140 CLLVQ------------SDPFFLPEICKSY-KGEGRKQTCGQPQPCERLHI--CEHFT-RGNCSY-LNCLRSHNLMDR 200 (229)
T ss_dssp HHHHT------------TCGGGSCCBCTTC-CCSSSCCSCSSSSCCCSBCS--CHHHH-TTCCCC-SSCSSCCCTTSH
T ss_pred heecc------------CCCccCchHHHHh-CCCCCCCcCCCCCCCcceec--cchhh-cCCcCC-CCccCccCccCc
Confidence 00000 0000012466666 4 47777777877775 88888 888888 688888877553
No 18
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.33 E-value=3.6e-05 Score=85.39 Aligned_cols=96 Identities=25% Similarity=0.539 Sum_probs=59.8
Q ss_pred ccccccccccccccC---CCCCCCCCCCCC---cccccc-ccccCccCCCCcccccccCCCCCC-CCccccc-----CCC
Q 039602 1891 RKYCQFFTRFGKCNK---DNGKCPYIHDPS---KIAVCT-KFLKGLCSNSDCKLTHKVIPERMP-DCSYFLQ-----GLC 1957 (2132)
Q Consensus 1891 tq~CkfFlRTGkCkK---gG~~CpFiHDPs---KvAICK-fFLRG~CsnGSCpFSHepspeRmP-vCrfFLn-----G~C 1957 (2132)
-.+|+||.- |.|.+ .+..|+|.||.. ...+=+ +-+.+.=...-|.+.-..+|.-.| +|.+| + |.|
T Consensus 89 LHLCK~~l~-G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLPeiC~~Y-kG~g~~g~C 166 (229)
T 3u9g_A 89 LHLCKLNLL-GRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPEICKSY-KGEGRKQTC 166 (229)
T ss_dssp BCCCHHHHT-TCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSCCBCTTC-CCSSSCCSC
T ss_pred eeechhhhc-CcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCchHHHHh-CCCCCCCcC
Confidence 457999996 99943 157899999952 111100 100110000112222222333333 89999 6 488
Q ss_pred CC-CCCCCCCCCCCCCCccCccccccCCCCCCcccCCCCcc
Q 039602 1958 TN-KNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHSYV 1997 (2132)
Q Consensus 1958 sN-dnCPYsHVK~spKapVCrdFlqGyCpKGdkCpFRHv~e 1997 (2132)
+. +.|...| +|++|++|.|.. ..|+..|.+.
T Consensus 167 ~~~~~C~kLH--------IC~~Fl~G~C~f-~~CkRsH~~~ 198 (229)
T 3u9g_A 167 GQPQPCERLH--------ICEHFTRGNCSY-LNCLRSHNLM 198 (229)
T ss_dssp SSSSCCCSBC--------SCHHHHTTCCCC-SSCSSCCCTT
T ss_pred CCCCCCccee--------ccchhhcCCcCC-CCccCccCcc
Confidence 87 8898888 699999999998 7999988753
No 19
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=96.38 E-value=3.8e-05 Score=73.89 Aligned_cols=66 Identities=30% Similarity=0.726 Sum_probs=53.4
Q ss_pred cCccccccccccccccCCCCCCCCCCCCCccccccccccCccCCCCcccccccCCCCCCCCcccccCCCCCCCCCCCCCC
Q 039602 1889 RKRKYCQFFTRFGKCNKDNGKCPYIHDPSKIAVCTKFLKGLCSNSDCKLTHKVIPERMPDCSYFLQGLCTNKNCPYRHVH 1968 (2132)
Q Consensus 1889 KKtq~CkfFlRTGkCkKgG~~CpFiHDPsKvAICKfFLRG~CsnGSCpFSHepspeRmPvCrfFLnG~CsNdnCPYsHVK 1968 (2132)
+..+.|+||.. |.+ ..|+|.|... ...|+++ ..|.+..|.|.|.. ...|+|+.. |.+..|+|.|..
T Consensus 7 ~~~e~CKf~~~---Ctn--~~C~f~Hp~~-~~~Cr~g--~~C~~~~C~f~HP~----~~~Crf~~~--C~n~~C~F~Hp~ 72 (80)
T 2lhn_A 7 KSLEQCKFGTH---CTN--KRCKYRHARS-HIMCREG--ANCTRIDCLFGHPI----NEDCRFGVN--CKNIYCLFRHPP 72 (80)
Confidence 45678999975 998 8999999754 3579986 57999999999962 246988774 999999999964
No 20
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=95.84 E-value=0.0002 Score=69.05 Aligned_cols=62 Identities=31% Similarity=0.628 Sum_probs=33.9
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCccCccccccCCCCCCcccCCCC--ccccCCCCcCcCCCCCCCCCCCCCCC
Q 039602 1948 DCSYFLQGLCTNKNCPYRHVHVNPNASTCEGFLKGYCADGDECRKKHS--YVCPTFKATGSCALGAKCRLHHPKSR 2021 (2132)
Q Consensus 1948 vCrfFLnG~CsNdnCPYsHVK~spKapVCrdFlqGyCpKGdkCpFRHv--~eCPDFa~TGsCprGdkCKFaHpere 2021 (2132)
.|+||.. |+++.|+|.|... ...|+++. .|.+ .+|.|.|. ..|.|+. .|.+ ..|.|.|+...
T Consensus 11 ~CKf~~~--Ctn~~C~f~Hp~~---~~~Cr~g~--~C~~-~~C~f~HP~~~~Crf~~---~C~n-~~C~F~Hp~g~ 74 (80)
T 2lhn_A 11 QCKFGTH--CTNKRCKYRHARS---HIMCREGA--NCTR-IDCLFGHPINEDCRFGV---NCKN-IYCLFRHPPGR 74 (80)
Confidence 4444442 5555555555431 12344332 3444 34555554 5676665 5888 89999997654
No 21
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.23 E-value=0.0066 Score=57.40 Aligned_cols=28 Identities=21% Similarity=0.721 Sum_probs=25.0
Q ss_pred ccccCCCCcCcCCCCCCCCCCCCCCCCCC
Q 039602 1996 YVCPTFKATGSCALGAKCRLHHPKSRSNG 2024 (2132)
Q Consensus 1996 ~eCPDFa~TGsCprGdkCKFaHperesr~ 2024 (2132)
.+|..| .+|.|++|+.|.|+|+..+.+.
T Consensus 21 ~LC~~~-~~G~C~~G~~C~FAHG~~ELr~ 48 (69)
T 2d9m_A 21 SICDRY-MNGTCPEGNSCKFAHGNAELHE 48 (69)
T ss_dssp SBCHHH-HHSCCSSCSSCSSBSSHHHHHH
T ss_pred ccCccc-CcCCCCCCCccCCcCCHHHHhh
Confidence 689999 5899999999999999988765
No 22
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=94.19 E-value=0.028 Score=50.44 Aligned_cols=39 Identities=26% Similarity=0.616 Sum_probs=28.8
Q ss_pred CCCCCCCC-CCCCccCccc-cccCCCCCCcccCCCCccccC
Q 039602 1962 CPYRHVHV-NPNASTCEGF-LKGYCADGDECRKKHSYVCPT 2000 (2132)
Q Consensus 1962 CPYsHVK~-spKapVCrdF-lqGyCpKGdkCpFRHv~eCPD 2000 (2132)
|-+.+... .....+|..| ..|||++|..|++.|...+|+
T Consensus 8 cclp~~~~~~~~~~iC~~FSayGwCp~G~~Cp~SHDiDl~~ 48 (50)
T 2fc6_A 8 CCLPPATHRPHPTSICDNFSAYGWCPLGPQCPQSHDISGPS 48 (50)
T ss_dssp CCCCTTSCCCCCSCBCSHHHHTCCCTTGGGCSSBCCCCCCC
T ss_pred ccCCCcccCccccchhhhccccccCCCCCCCCccccCCCCC
Confidence 44444433 2467899999 579999999999999887775
No 23
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.04 E-value=0.17 Score=48.09 Aligned_cols=23 Identities=22% Similarity=0.722 Sum_probs=13.5
Q ss_pred cccccccccccccCCCCCCCCCCCC
Q 039602 1892 KYCQFFTRFGKCNKDNGKCPYIHDP 1916 (2132)
Q Consensus 1892 q~CkfFlRTGkCkKgG~~CpFiHDP 1916 (2132)
.+|..|. +|.|.+ |..|.|+|..
T Consensus 21 ~LC~~~~-~G~C~~-G~~C~FAHG~ 43 (69)
T 2d9m_A 21 SICDRYM-NGTCPE-GNSCKFAHGN 43 (69)
T ss_dssp SBCHHHH-HSCCSS-CSSCSSBSSH
T ss_pred ccCcccC-cCCCCC-CCccCCcCCH
Confidence 5666663 366666 5666666653
No 24
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=87.50 E-value=0.16 Score=45.66 Aligned_cols=27 Identities=37% Similarity=0.768 Sum_probs=24.0
Q ss_pred CCccccCCCCcCcCCCCCCCCCCCCCC
Q 039602 1994 HSYVCPTFKATGSCALGAKCRLHHPKS 2020 (2132)
Q Consensus 1994 Hv~eCPDFa~TGsCprGdkCKFaHper 2020 (2132)
-..+|..|+..|+|++|..|+|.|...
T Consensus 19 ~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred ccchhhhccccccCCCCCCCCccccCC
Confidence 347899999999999999999999754
No 25
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=81.60 E-value=0.2 Score=56.10 Aligned_cols=21 Identities=38% Similarity=0.719 Sum_probs=10.4
Q ss_pred cCccccccCCCCCCcccCCCC
Q 039602 1975 TCEGFLKGYCADGDECRKKHS 1995 (2132)
Q Consensus 1975 VCrdFlqGyCpKGdkCpFRHv 1995 (2132)
+|.+|.+|.|.+|.+|+|+|.
T Consensus 72 ~C~ffakG~C~~G~~C~y~H~ 92 (240)
T 3u1l_A 72 FCLFFAKGMCCLGPKCEYLHH 92 (240)
T ss_dssp BCHHHHTTCCSCGGGCSSBBS
T ss_pred EcCccccCCCCCCCCCCccCC
Confidence 444444455555555555543
No 26
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=80.18 E-value=0.3 Score=54.74 Aligned_cols=26 Identities=35% Similarity=0.782 Sum_probs=22.6
Q ss_pred CccccCCCCcCcCCCCCCCCCCCCCCC
Q 039602 1995 SYVCPTFKATGSCALGAKCRLHHPKSR 2021 (2132)
Q Consensus 1995 v~eCPDFa~TGsCprGdkCKFaHpere 2021 (2132)
.+.|.+|+ +|.|.+|..|+|.|....
T Consensus 70 ~~~C~ffa-kG~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 70 LFFCLFFA-KGMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp CSBCHHHH-TTCCSCGGGCSSBBSCCC
T ss_pred CeEcCccc-cCCCCCCCCCCccCCCCC
Confidence 46899999 699999999999997554
No 27
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=35.83 E-value=7.7 Score=43.68 Aligned_cols=19 Identities=42% Similarity=0.908 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCCCCCCC
Q 039602 2006 SCALGAKCRLHHPKSRSNG 2024 (2132)
Q Consensus 2006 sCprGdkCKFaHperesr~ 2024 (2132)
.|.+|.+|||.|+++..+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~ 218 (223)
T 3v33_A 200 KCTYGIKCRFFHPERPSCP 218 (223)
T ss_dssp -------------------
T ss_pred ccccCCcceecCCccCCcc
Confidence 6999999999999987543
No 28
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=27.23 E-value=15 Score=40.96 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=16.8
Q ss_pred cccccccccchhHHhhhhhcccccccc
Q 039602 76 NDFAHRISINDDRLQQHQQTDRRHHHH 102 (2132)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (2132)
-+-|||++.+.+.|+++....|.||||
T Consensus 234 ~~~a~r~~~~~~~~~~~~~~~~~~~~~ 260 (261)
T 2eyu_A 234 LEDAMEASPDPKELERMIRGGRHHHHH 260 (261)
T ss_dssp HHHHHHHCSCHHHHHHHHC--------
T ss_pred HHHHHHHhCCHHHHHHHhccCcccccC
Confidence 356899999999999999988877777
Done!