Your job contains 1 sequence.
>039604
MVEQTQSQTQNQPEPQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSP
PSKIPLRPRKIRKLSPDNGVDQASSSQPTESSKATSAKSTKSRAIQQQQQTLTVPRIIAR
PLSSEGEVEAAIRHLRNADRQLASLIDIHPPPTFDSFHTPFLALTRSILYQQLAFKAGTS
IYTRFIALCGGEAGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVN
MDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQ
MDQLCEKWRPYRSVASWYLWRFVEAKGAPSSAAAVAAGAALPQPQQEEQQQPQLLDQINS
LINIGYNDFHINS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 039604
(373 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2025127 - symbol:AT1G75230 species:3702 "Arabi... 1053 1.9e-106 1
TAIR|locus:2016457 - symbol:AT1G19480 species:3702 "Arabi... 1011 5.4e-102 1
TAIR|locus:2077947 - symbol:AT3G50880 species:3702 "Arabi... 718 5.9e-76 2
ASPGD|ASPL0000073519 - symbol:AN4389 species:162425 "Emer... 254 4.8e-28 2
POMBASE|SPAPB24D3.04c - symbol:mag1 "DNA-3-methyladenine ... 263 1.0e-22 1
POMBASE|SPBC23G7.11 - symbol:mag2 "DNA-3-methyladenine gl... 261 1.6e-22 1
UNIPROTKB|Q0BWS7 - symbol:HNE_3393 "Putative DNA-3-methyl... 233 1.5e-19 1
UNIPROTKB|Q5LRK0 - symbol:SPO2127 "DNA-3-methyladenine gl... 202 3.0e-16 1
TIGR_CMR|SPO_2127 - symbol:SPO_2127 "DNA-3-methyladenine ... 202 3.0e-16 1
TIGR_CMR|BA_3871 - symbol:BA_3871 "DNA-3-methyladenine gl... 187 8.9e-13 1
CGD|CAL0000388 - symbol:orf19.3639 species:5476 "Candida ... 178 1.9e-12 2
UNIPROTKB|Q59Y10 - symbol:MAG1 "Putative uncharacterized ... 178 1.9e-12 2
SGD|S000000944 - symbol:MAG1 "3-methyl-adenine DNA glycos... 149 3.9e-10 2
UNIPROTKB|Q10630 - symbol:alkA "Probable bifunctional tra... 126 4.4e-05 1
>TAIR|locus:2025127 [details] [associations]
symbol:AT1G75230 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA;ISS]
InterPro:IPR003265 InterPro:IPR011257 Pfam:PF00730 SMART:SM00478
EMBL:CP002684 GO:GO:0005634 GO:GO:0003824 GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 KO:K01247 Gene3D:1.10.1670.10
InterPro:IPR023170 IPI:IPI00532637 RefSeq:NP_974147.1
UniGene:At.18305 ProteinModelPortal:F4HXH4 SMR:F4HXH4 PRIDE:F4HXH4
EnsemblPlants:AT1G75230.2 GeneID:843860 KEGG:ath:AT1G75230
OMA:ARSLTCE Uniprot:F4HXH4
Length = 394
Score = 1053 (375.7 bits), Expect = 1.9e-106, P = 1.9e-106
Identities = 207/291 (71%), Positives = 232/291 (79%)
Query: 38 VQTETANNATITHANVTP--QTSSPPSKIPLRPRKIRKLSPDNGVDQASSSQPTEXXXXX 95
V ++ TI VT SSPP+KIPLRPRKIRKLSPD+ D + P
Sbjct: 45 VSGSIVSSTTIEAPQVTELGNVSSPPTKIPLRPRKIRKLSPDD--DASDGFNPEHNLSQM 102
Query: 96 XXXXXXXRAIQQQQQTLTVPRIIARPLSSEGEVEAAIRHLRNADRQLASLIDIHPPPTFD 155
++ Q +T+TVPRI AR L+ EGE+EAA+ HLR+ D LASLIDIHPPPTF+
Sbjct: 103 TTTKPATKSKLSQSRTVTVPRIQARSLTCEGELEAALHHLRSVDPLLASLIDIHPPPTFE 162
Query: 156 SFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPETVLALTPQQLRQIGVSG 215
+F TPFLAL RSILYQQLA KAG SIYTRF+ALCGGE GVVPE VL LTPQQLRQIGVSG
Sbjct: 163 TFQTPFLALIRSILYQQLAAKAGNSIYTRFVALCGGENGVVPENVLPLTPQQLRQIGVSG 222
Query: 216 RKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVL 275
RKASYLHDLARKYQNGILSDS IVNMD+KSLFTMLTMVNGIGSWSVHMFMI SLHRPDVL
Sbjct: 223 RKASYLHDLARKYQNGILSDSGIVNMDEKSLFTMLTMVNGIGSWSVHMFMINSLHRPDVL 282
Query: 276 PINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLWRFVEAK 326
P+NDLGVRKGVQ+L +E+LPRPS+M+QLCEKWRPYRSVASWYLWR +E+K
Sbjct: 283 PVNDLGVRKGVQMLNGMEDLPRPSKMEQLCEKWRPYRSVASWYLWRLIESK 333
>TAIR|locus:2016457 [details] [associations]
symbol:AT1G19480 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA;ISS]
InterPro:IPR003265 InterPro:IPR011257 Pfam:PF00730 SMART:SM00478
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0003824 GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 eggNOG:COG0122 KO:K01247
Gene3D:1.10.1670.10 InterPro:IPR023170 HOGENOM:HOG000261908
EMBL:BT026466 IPI:IPI00542919 RefSeq:NP_564085.1 UniGene:At.41746
ProteinModelPortal:Q0V7V4 SMR:Q0V7V4 PRIDE:Q0V7V4
EnsemblPlants:AT1G19480.1 GeneID:838533 KEGG:ath:AT1G19480
TAIR:At1g19480 InParanoid:Q0V7V4 OMA:DNESATA PhylomeDB:Q0V7V4
ProtClustDB:CLSN2684571 Genevestigator:Q0V7V4 Uniprot:Q0V7V4
Length = 382
Score = 1011 (360.9 bits), Expect = 5.4e-102, P = 5.4e-102
Identities = 204/298 (68%), Positives = 230/298 (77%)
Query: 38 VQTETANNATITHANVTP--QTSSPPSKIPLRPRKIRKLSPDNGV-------DQASSSQP 88
V ++ TI +T SSPPSKIPLRPRKIRKL+ D V + SSSQ
Sbjct: 42 VSGSIVSSTTIDARRITELGNVSSPPSKIPLRPRKIRKLTLDGDVSGEDYKAEDISSSQV 101
Query: 89 TEXXXXXXXXXXXXRAIQQQQQTLTVPRIIARPLSSEGEVEAAIRHLRNADRQLASLIDI 148
+ + +TVPRI ARPL+ EGE+E AI +LRNAD LA+LID+
Sbjct: 102 NSPLATDGKSPGKGKL--SHLRAITVPRIQARPLTCEGELETAIHYLRNADPLLAALIDV 159
Query: 149 HPPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPETVLALTPQQL 208
HPPPTF+SF TPFLAL R+ILYQQLA KAG SIYTRF++LCGGE VVPETVL+L PQQL
Sbjct: 160 HPPPTFESFKTPFLALIRNILYQQLAMKAGNSIYTRFVSLCGGENLVVPETVLSLNPQQL 219
Query: 209 RQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFS 268
RQIGVSGRKASYLHDLARKYQNGILSDSAI+NMD+KSLFTMLTMVNGIGSWSVHMFMI S
Sbjct: 220 RQIGVSGRKASYLHDLARKYQNGILSDSAILNMDEKSLFTMLTMVNGIGSWSVHMFMINS 279
Query: 269 LHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLWRFVEAK 326
LHRPDVLP+NDLGVRKGVQLLY L++LPRPSQM+Q C KWRPYRSV SWY+WR +EAK
Sbjct: 280 LHRPDVLPVNDLGVRKGVQLLYGLDDLPRPSQMEQHCAKWRPYRSVGSWYMWRLIEAK 337
>TAIR|locus:2077947 [details] [associations]
symbol:AT3G50880 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA;ISS]
InterPro:IPR003265 InterPro:IPR011257 Pfam:PF00730 SMART:SM00478
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0008725 GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 eggNOG:COG0122 KO:K01247
Gene3D:1.10.1670.10 InterPro:IPR023170 EMBL:AL049862
HOGENOM:HOG000261908 EMBL:BT005275 EMBL:AK119087 IPI:IPI00540517
PIR:T08409 RefSeq:NP_190657.1 UniGene:At.35446
ProteinModelPortal:Q9SVL1 SMR:Q9SVL1 ProMEX:Q9SVL1
EnsemblPlants:AT3G50880.1 GeneID:824252 KEGG:ath:AT3G50880
TAIR:At3g50880 InParanoid:Q9SVL1 OMA:WTANMQL PhylomeDB:Q9SVL1
ProtClustDB:CLSN2915368 Genevestigator:Q9SVL1 Uniprot:Q9SVL1
Length = 273
Score = 718 (257.8 bits), Expect = 5.9e-76, Sum P(2) = 5.9e-76
Identities = 140/217 (64%), Positives = 170/217 (78%)
Query: 115 PRII---ARPLSSEGEVEAAIRHLRNADRQLASLIDIH-PPPTFDSFHTPFLALTRSILY 170
PRII + PLS++ V+ A+RHL+++D L +LI H PP FDS +TPFL+L RSILY
Sbjct: 54 PRIIITASPPLSTKSTVDIALRHLQSSDELLGALITTHNDPPLFDSSNTPFLSLARSILY 113
Query: 171 QQLAFKAGTSIYTRFIALC-GGEAGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQ 229
QQLA KA IY RFI+L GGEAGVVPE+V++L+ LR+IGVSGRKASYLHDLA KY
Sbjct: 114 QQLATKAAKCIYDRFISLFNGGEAGVVPESVISLSAVDLRKIGVSGRKASYLHDLADKYN 173
Query: 230 NGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLL 289
NG+LSD I+ M D+ L LT+V GIG W+VHMFMIFSLHRPDVLP+ DLGVRKGV+ L
Sbjct: 174 NGVLSDELILKMSDEELIDRLTLVKGIGVWTVHMFMIFSLHRPDVLPVGDLGVRKGVKDL 233
Query: 290 YSLEELPRPSQMDQLCEKWRPYRSVASWYLWRFVEAK 326
Y L+ LP P QM+QLCEKWRPYRSV SWY+WR +E++
Sbjct: 234 YGLKNLPGPLQMEQLCEKWRPYRSVGSWYMWRLIESR 270
Score = 66 (28.3 bits), Expect = 5.9e-76, Sum P(2) = 5.9e-76
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 39 QTETANNATITHANVT-PQTSSPPSKIPLRPRKIRKLSPD 77
Q+ ++ I+ N+T + S S+I RPRKIRK+S D
Sbjct: 12 QSSLPPDSLISAGNLTVSEVSGSSSRIRFRPRKIRKVSSD 51
>ASPGD|ASPL0000073519 [details] [associations]
symbol:AN4389 species:162425 "Emericella nidulans"
[GO:0047405 "pyrimidine-5'-nucleotide nucleosidase activity"
evidence=RCA] [GO:0043173 "nucleotide salvage" evidence=RCA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032993 "protein-DNA
complex" evidence=IEA] [GO:0008725 "DNA-3-methyladenine glycosylase
activity" evidence=IEA] [GO:0032131 "alkylated DNA binding"
evidence=IEA] [GO:0043916 "DNA-7-methylguanine glycosylase
activity" evidence=IEA] [GO:0052820 "DNA-1,N6-ethenoadenine
N-glycosylase activity" evidence=IEA] [GO:0006307 "DNA dealkylation
involved in DNA repair" evidence=IEA] [GO:0045007 "depurination"
evidence=IEA] [GO:0000725 "recombinational repair" evidence=IEA]
InterPro:IPR003265 InterPro:IPR011257 Pfam:PF00730 SMART:SM00478
GO:GO:0003824 GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
eggNOG:COG0122 KO:K01247 Gene3D:1.10.1670.10 InterPro:IPR023170
EMBL:BN001303 EMBL:AACD01000076 OrthoDB:EOG45HW6S
RefSeq:XP_661993.1 ProteinModelPortal:Q5B4Z2
EnsemblFungi:CADANIAT00006068 GeneID:2872182 KEGG:ani:AN4389.2
HOGENOM:HOG000188222 OMA:PHRTNAT Uniprot:Q5B4Z2
Length = 391
Score = 254 (94.5 bits), Expect = 4.8e-28, Sum P(2) = 4.8e-28
Identities = 52/129 (40%), Positives = 73/129 (56%)
Query: 197 PETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGI 256
PE ++ + LR G+S RKA Y+H LA K+ +G LS + ++N D+ L LT V G+
Sbjct: 255 PEEIVRVDIPTLRTAGLSQRKAEYIHGLAEKFASGELSATMLLNASDEELLEKLTAVRGL 314
Query: 257 GSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLE-ELPRPSQMDQLCEKWRPYRSVA 315
G WSV MF F+L R DV DLGV++G + + +M L K+ PYRS+
Sbjct: 315 GRWSVEMFACFTLKRTDVFSTGDLGVQRGCAAFMGKDFKYMSEKEMLDLAAKFAPYRSLF 374
Query: 316 SWYLWRFVE 324
WY+WR E
Sbjct: 375 MWYMWRVEE 383
Score = 77 (32.2 bits), Expect = 4.8e-28, Sum P(2) = 4.8e-28
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 118 IARPLSSEGEV-EAAIRHLRNADRQLASLIDIH-----PPPTFDSFHTPFLALTRSILYQ 171
+ RP ++ G + E A HL D +L LI H P PF +L +I+ Q
Sbjct: 150 LPRPTATTGTLLEKATAHLIATDPRLEPLIKAHHCSLFSPEGLAEKIDPFRSLVGTIIGQ 209
Query: 172 QLAFKAGTSIYTRFIALCGG 191
Q++ A SI +F+AL G
Sbjct: 210 QVSGAAARSIREKFVALLWG 229
>POMBASE|SPAPB24D3.04c [details] [associations]
symbol:mag1 "DNA-3-methyladenine glycosylase Mag1"
species:4896 "Schizosaccharomyces pombe" [GO:0000725
"recombinational repair" evidence=IMP] [GO:0003684 "damaged DNA
binding" evidence=IDA] [GO:0003905 "alkylbase DNA N-glycosylase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0006285 "base-excision repair, AP site formation" evidence=IGI]
[GO:0006307 "DNA dealkylation involved in DNA repair" evidence=IDA]
[GO:0008725 "DNA-3-methyladenine glycosylase activity"
evidence=IGI] [GO:0032131 "alkylated DNA binding" evidence=IDA]
[GO:0032993 "protein-DNA complex" evidence=IDA] [GO:0043916
"DNA-7-methylguanine glycosylase activity" evidence=IGI;IDA]
[GO:0045007 "depurination" evidence=IDA] [GO:0052820
"DNA-1,N6-ethenoadenine N-glycosylase activity" evidence=IDA]
[GO:0052821 "DNA-7-methyladenine glycosylase activity"
evidence=IEA] [GO:0052822 "DNA-3-methylguanine glycosylase
activity" evidence=IEA] InterPro:IPR000035 InterPro:IPR003265
InterPro:IPR003583 InterPro:IPR011257 Pfam:PF00730 PROSITE:PS00516
SMART:SM00278 SMART:SM00478 PomBase:SPAPB24D3.04c GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0008725
Gene3D:1.10.340.30 SUPFAM:SSF48150 eggNOG:COG0122 KO:K01247
GO:GO:0052822 GO:GO:0052821 GO:GO:0043916 GO:GO:0006307
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0045007 GO:GO:0032993
GO:GO:0000725 EMBL:U76637 PIR:JC5177 RefSeq:NP_593991.1 PDB:3S6I
PDBsum:3S6I ProteinModelPortal:Q92383 STRING:Q92383
EnsemblFungi:SPAPB24D3.04c.1 GeneID:2543565 KEGG:spo:SPAPB24D3.04c
HOGENOM:HOG000261908 OMA:YLWRIAD OrthoDB:EOG45HW6S NextBio:20804573
GO:GO:0032131 GO:GO:0052820 Uniprot:Q92383
Length = 228
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 59/192 (30%), Positives = 99/192 (51%)
Query: 134 HLRNAD---RQLASLIDIHPPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCG 190
HL D ++L L+ + P P+ L R++ QQL KA +I+ RF ++
Sbjct: 21 HLSGLDENWKRLVKLVGNYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRFKSISN 80
Query: 191 GEAGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGIL-SDSAIVNMDDKSLFTM 249
PE + + + +R G S RK L +A +G++ + + ++ L
Sbjct: 81 NGQFPTPEEIRDMDFEIMRACGFSARKIDSLKSIAEATISGLIPTKEEAERLSNEELIER 140
Query: 250 LTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWR 309
LT + GIG W+V M +IFSL+R DV+P +DL +R G + L+ L ++P + + E
Sbjct: 141 LTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLPKIPTKMYVLKHSEICA 200
Query: 310 PYRSVASWYLWR 321
P+R+ A+WYLW+
Sbjct: 201 PFRTAAAWYLWK 212
>POMBASE|SPBC23G7.11 [details] [associations]
symbol:mag2 "DNA-3-methyladenine glycosidase Mag2"
species:4896 "Schizosaccharomyces pombe" [GO:0003905 "alkylbase DNA
N-glycosylase activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006285 "base-excision repair, AP site
formation" evidence=IGI] [GO:0006307 "DNA dealkylation involved in
DNA repair" evidence=ISO] [GO:0008725 "DNA-3-methyladenine
glycosylase activity" evidence=IEA] [GO:0043916
"DNA-7-methylguanine glycosylase activity" evidence=IEA]
[GO:0052821 "DNA-7-methyladenine glycosylase activity"
evidence=IEA] [GO:0052822 "DNA-3-methylguanine glycosylase
activity" evidence=IEA] InterPro:IPR000035 InterPro:IPR003265
InterPro:IPR011257 Pfam:PF00730 PROSITE:PS00516 SMART:SM00478
PomBase:SPBC23G7.11 GO:GO:0005634 GO:GO:0008725 Gene3D:1.10.340.30
SUPFAM:SSF48150 eggNOG:COG0122 KO:K01247 GO:GO:0003905
GO:GO:0052822 GO:GO:0052821 GO:GO:0043916 GO:GO:0006307
Gene3D:1.10.1670.10 InterPro:IPR023170 EMBL:CU329671 GO:GO:0006285
HOGENOM:HOG000261908 PIR:T39957 RefSeq:NP_595869.1 PDB:4B21
PDB:4B22 PDB:4B23 PDB:4B24 PDBsum:4B21 PDBsum:4B22 PDBsum:4B23
PDBsum:4B24 ProteinModelPortal:O94468 STRING:O94468
EnsemblFungi:SPBC23G7.11.1 GeneID:2540646 KEGG:spo:SPBC23G7.11
OMA:NYTEREL OrthoDB:EOG43248C NextBio:20801770 Uniprot:O94468
Length = 213
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 56/204 (27%), Positives = 107/204 (52%)
Query: 122 LSSEGEVEAAIRHLRNADRQLASLIDIHPPPTFDSF--HTPFLALTRSILYQQLAFKAGT 179
+S + + + A +HL + D + +SL+ P T H P+ + R+I Q+L+ A
Sbjct: 1 MSKDSDYKRAEKHLSSIDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATN 60
Query: 180 SIYTRFIALCG-GEAGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNG-ILSDSA 237
SI +F C + P+ ++ + L + G S K+ +H +A N I S S
Sbjct: 61 SIINKFCTQCSDNDEFPTPKQIMETDVETLHECGFSKLKSQEIHIVAEAALNKQIPSKSE 120
Query: 238 IVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPR 297
I M ++ L L+ + G+ W++ M+ IF+L R D++P +D ++ + + L P+
Sbjct: 121 IEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLSSKPQ 180
Query: 298 PSQMDQLCEKWRPYRSVASWYLWR 321
++++L + +PYR++A+WYLW+
Sbjct: 181 TEEVEKLTKPCKPYRTIAAWYLWQ 204
>UNIPROTKB|Q0BWS7 [details] [associations]
symbol:HNE_3393 "Putative DNA-3-methyladenine glycosylase"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0003905
"alkylbase DNA N-glycosylase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] InterPro:IPR003265 InterPro:IPR003583
InterPro:IPR011257 Pfam:PF00730 SMART:SM00278 SMART:SM00478
GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150 eggNOG:COG0122
KO:K01247 GO:GO:0003905 Gene3D:1.10.1670.10 InterPro:IPR023170
GO:GO:0003677 GO:GO:0006281 EMBL:CP000158 GenomeReviews:CP000158_GR
HOGENOM:HOG000261908 RefSeq:YP_762066.1 ProteinModelPortal:Q0BWS7
STRING:Q0BWS7 GeneID:4288503 KEGG:hne:HNE_3393 PATRIC:32219665
OMA:IVCGQQL BioCyc:HNEP228405:GI69-3395-MONOMER Uniprot:Q0BWS7
Length = 213
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 64/203 (31%), Positives = 99/203 (48%)
Query: 124 SEGEVEAAIRHLRNADRQLASLIDIHPPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYT 183
S ++ A L AD LA D P + + + L R I +QQL+ KA +I+
Sbjct: 5 SRRRLKTACERLALADPALARAYDSLGVPEWRTSEPGYNMLGRMISHQQLSTKAAATIWG 64
Query: 184 RFIALCGGEAGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDD 243
R + + GE V PET+LA P LR G+S K ++L +A G L+ + + D
Sbjct: 65 R-VEVFLGE--VTPETLLAADPDALRACGLSRPKVAHLTSIAEAMVTGELNLARVCAADL 121
Query: 244 KSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQ 303
S L V GIG W+ +F+++++ D PI D+G+ + + L E Q
Sbjct: 122 DSARAELVSVRGIGPWTAELFLLYAVGAMDAFPIADVGLMEAHKQLGRYETRMESKIFTQ 181
Query: 304 LCEKWRPYRSVASWYLWRFVEAK 326
E WRP+R VA+ LW ++ A+
Sbjct: 182 HAEIWRPHRGVAAHLLWGWLNAE 204
>UNIPROTKB|Q5LRK0 [details] [associations]
symbol:SPO2127 "DNA-3-methyladenine glycosylase II,
putative" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003905
"alkylbase DNA N-glycosylase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] InterPro:IPR003265 InterPro:IPR011257
Pfam:PF00730 SMART:SM00478 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150 KO:K01247
GO:GO:0003905 Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0006281
HOGENOM:HOG000261908 OMA:IVCGQQL RefSeq:YP_167355.1
ProteinModelPortal:Q5LRK0 GeneID:3193412 KEGG:sil:SPO2127
PATRIC:23377597 ProtClustDB:CLSK933770 Uniprot:Q5LRK0
Length = 210
Score = 202 (76.2 bits), Expect = 3.0e-16, P = 3.0e-16
Identities = 63/213 (29%), Positives = 103/213 (48%)
Query: 112 LTVPRIIARP-LSSEGEVEAAIRHLRNADRQLASLIDIHPPPTFDSFHTPFLALTRSILY 170
+TV RII P +EG AA L + ++A + + P F L +I+
Sbjct: 1 MTVGRIIETPDCVAEG---AA--WLAESCPRMAHAMTLTGPLPLRRRPDGFAELLSAIVS 55
Query: 171 QQLAFKAGTSIYTRFIALCGGEAGVV-PETVLALTPQQLRQIGVSGRKASYLHDLARKYQ 229
QQ++ + +I+ R A AG++ P +L + LR G+S +K Y +LA+
Sbjct: 56 QQVSVASANAIWARMRA-----AGLIGPRKILWASDDDLRAAGLSRQKIRYARELAKAR- 109
Query: 230 NGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLL 289
+ + + D + LT V GIG W+ ++ +FSL R DV DL +++ ++L
Sbjct: 110 ---IDFNGLRAAPDADVVAELTRVPGIGVWTAEIYAMFSLGRADVFAPGDLALQEAARVL 166
Query: 290 YSLEELPRPSQMDQLCEKWRPYRSVASWYLWRF 322
Y L E P + Q+ W P+RSVA+ LW +
Sbjct: 167 YELPERPSERALRQMALAWSPWRSVAARVLWAY 199
>TIGR_CMR|SPO_2127 [details] [associations]
symbol:SPO_2127 "DNA-3-methyladenine glycosylase II,
putative" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003905
"alkylbase DNA N-glycosylase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] InterPro:IPR003265 InterPro:IPR011257
Pfam:PF00730 SMART:SM00478 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150 KO:K01247
GO:GO:0003905 Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0006281
HOGENOM:HOG000261908 OMA:IVCGQQL RefSeq:YP_167355.1
ProteinModelPortal:Q5LRK0 GeneID:3193412 KEGG:sil:SPO2127
PATRIC:23377597 ProtClustDB:CLSK933770 Uniprot:Q5LRK0
Length = 210
Score = 202 (76.2 bits), Expect = 3.0e-16, P = 3.0e-16
Identities = 63/213 (29%), Positives = 103/213 (48%)
Query: 112 LTVPRIIARP-LSSEGEVEAAIRHLRNADRQLASLIDIHPPPTFDSFHTPFLALTRSILY 170
+TV RII P +EG AA L + ++A + + P F L +I+
Sbjct: 1 MTVGRIIETPDCVAEG---AA--WLAESCPRMAHAMTLTGPLPLRRRPDGFAELLSAIVS 55
Query: 171 QQLAFKAGTSIYTRFIALCGGEAGVV-PETVLALTPQQLRQIGVSGRKASYLHDLARKYQ 229
QQ++ + +I+ R A AG++ P +L + LR G+S +K Y +LA+
Sbjct: 56 QQVSVASANAIWARMRA-----AGLIGPRKILWASDDDLRAAGLSRQKIRYARELAKAR- 109
Query: 230 NGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLL 289
+ + + D + LT V GIG W+ ++ +FSL R DV DL +++ ++L
Sbjct: 110 ---IDFNGLRAAPDADVVAELTRVPGIGVWTAEIYAMFSLGRADVFAPGDLALQEAARVL 166
Query: 290 YSLEELPRPSQMDQLCEKWRPYRSVASWYLWRF 322
Y L E P + Q+ W P+RSVA+ LW +
Sbjct: 167 YELPERPSERALRQMALAWSPWRSVAARVLWAY 199
>TIGR_CMR|BA_3871 [details] [associations]
symbol:BA_3871 "DNA-3-methyladenine glycosidase"
species:198094 "Bacillus anthracis str. Ames" [GO:0006281 "DNA
repair" evidence=ISS] [GO:0008725 "DNA-3-methyladenine glycosylase
activity" evidence=ISS] InterPro:IPR000035 InterPro:IPR003265
InterPro:IPR011257 InterPro:IPR012904 Pfam:PF00730 Pfam:PF07934
PROSITE:PS00516 SMART:SM00478 GO:GO:0008725 GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 KO:K01247 GO:GO:0052822
GO:GO:0052821 GO:GO:0043916 Gene3D:1.10.1670.10 InterPro:IPR023170
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006289 GO:GO:0008534 RefSeq:NP_846120.1 RefSeq:YP_020511.1
RefSeq:YP_029840.1 ProteinModelPortal:Q81WU5 DNASU:1088762
EnsemblBacteria:EBBACT00000011095 EnsemblBacteria:EBBACT00000014910
EnsemblBacteria:EBBACT00000023602 GeneID:1088762 GeneID:2815196
GeneID:2852868 KEGG:ban:BA_3871 KEGG:bar:GBAA_3871 KEGG:bat:BAS3587
HOGENOM:HOG000221909 OMA:FEALCWG ProtClustDB:CLSK886592
BioCyc:BANT260799:GJAJ-3646-MONOMER
BioCyc:BANT261594:GJ7F-3762-MONOMER Uniprot:Q81WU5
Length = 303
Score = 187 (70.9 bits), Expect = 8.9e-13, P = 8.9e-13
Identities = 37/126 (29%), Positives = 66/126 (52%)
Query: 197 PETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDD-KSLFTMLTMVNG 255
PET+ L + L+ + ++ RK YL +A+ G LS +++ + D K LT ++G
Sbjct: 175 PETIANLHVEDLKNLKMTTRKCEYLIGIAKLITEGNLSKESLLQIQDVKQAEKRLTAIHG 234
Query: 256 IGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVA 315
IG W+ + ++ L P PI+D+G+ ++ L E P ++ W+ + S A
Sbjct: 235 IGPWTANYVLMRCLRFPSAFPIDDVGLHNAIKYLTGSESKPTKHEIKDFAVNWKNWESYA 294
Query: 316 SWYLWR 321
++YLWR
Sbjct: 295 TFYLWR 300
>CGD|CAL0000388 [details] [associations]
symbol:orf19.3639 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006307 "DNA dealkylation
involved in DNA repair" evidence=IEA] [GO:0006285 "base-excision
repair, AP site formation" evidence=IEA] [GO:0003905 "alkylbase DNA
N-glycosylase activity" evidence=IEA] InterPro:IPR000035
InterPro:IPR003265 InterPro:IPR003583 InterPro:IPR011257
Pfam:PF00730 PROSITE:PS00516 SMART:SM00278 SMART:SM00478
CGD:CAL0000388 GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
eggNOG:COG0122 KO:K01247 GO:GO:0003905 Gene3D:1.10.1670.10
InterPro:IPR023170 GO:GO:0003677 EMBL:AACQ01000103
EMBL:AACQ01000102 RefSeq:XP_714480.1 RefSeq:XP_714528.1
ProteinModelPortal:Q59Y10 STRING:Q59Y10 GeneID:3643839
GeneID:3643897 KEGG:cal:CaO19.11121 KEGG:cal:CaO19.3639
Uniprot:Q59Y10
Length = 354
Score = 178 (67.7 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 49/154 (31%), Positives = 79/154 (51%)
Query: 158 HTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPETVLALTPQQLRQIGVSGRK 217
HT + +L RS++ QQ++ A +I TRF L G P+ L TP++L+ +G+S K
Sbjct: 139 HTYWYSLIRSVIAQQVSGAAAKAIQTRFEGLFDGIP--TPDKTLKFTPEELKSVGLSNMK 196
Query: 218 ASYLHDLARKYQ--NGILSDSAIVN---MDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRP 272
Y+ ++ + N L+ +DD + L + GIG WS MF +F+L
Sbjct: 197 VKYVQSISEAFNDPNNHLTRFEFYKQSKLDD--ILIELCKLKGIGIWSAKMFAMFTLEEM 254
Query: 273 DVLPINDLGVRKGV-QLLYSLEELPRPSQMDQLC 305
DV +DLG+ +G+ + L EL + Q+ Q C
Sbjct: 255 DVFAEDDLGIARGMARYLNKRPELLK--QIKQEC 286
Score = 45 (20.9 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 306 EKWRPYRSVASWYLWR 321
+++ PYRSV LWR
Sbjct: 325 KRFSPYRSVFMMILWR 340
>UNIPROTKB|Q59Y10 [details] [associations]
symbol:MAG1 "Putative uncharacterized protein MAG1"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000035
InterPro:IPR003265 InterPro:IPR003583 InterPro:IPR011257
Pfam:PF00730 PROSITE:PS00516 SMART:SM00278 SMART:SM00478
CGD:CAL0000388 GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
eggNOG:COG0122 KO:K01247 GO:GO:0003905 Gene3D:1.10.1670.10
InterPro:IPR023170 GO:GO:0003677 EMBL:AACQ01000103
EMBL:AACQ01000102 RefSeq:XP_714480.1 RefSeq:XP_714528.1
ProteinModelPortal:Q59Y10 STRING:Q59Y10 GeneID:3643839
GeneID:3643897 KEGG:cal:CaO19.11121 KEGG:cal:CaO19.3639
Uniprot:Q59Y10
Length = 354
Score = 178 (67.7 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 49/154 (31%), Positives = 79/154 (51%)
Query: 158 HTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPETVLALTPQQLRQIGVSGRK 217
HT + +L RS++ QQ++ A +I TRF L G P+ L TP++L+ +G+S K
Sbjct: 139 HTYWYSLIRSVIAQQVSGAAAKAIQTRFEGLFDGIP--TPDKTLKFTPEELKSVGLSNMK 196
Query: 218 ASYLHDLARKYQ--NGILSDSAIVN---MDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRP 272
Y+ ++ + N L+ +DD + L + GIG WS MF +F+L
Sbjct: 197 VKYVQSISEAFNDPNNHLTRFEFYKQSKLDD--ILIELCKLKGIGIWSAKMFAMFTLEEM 254
Query: 273 DVLPINDLGVRKGV-QLLYSLEELPRPSQMDQLC 305
DV +DLG+ +G+ + L EL + Q+ Q C
Sbjct: 255 DVFAEDDLGIARGMARYLNKRPELLK--QIKQEC 286
Score = 45 (20.9 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 306 EKWRPYRSVASWYLWR 321
+++ PYRSV LWR
Sbjct: 325 KRFSPYRSVFMMILWR 340
>SGD|S000000944 [details] [associations]
symbol:MAG1 "3-methyl-adenine DNA glycosylase" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IC]
[GO:0003905 "alkylbase DNA N-glycosylase activity"
evidence=IEA;IDA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0052822 "DNA-3-methylguanine
glycosylase activity" evidence=IEA] [GO:0006307 "DNA dealkylation
involved in DNA repair" evidence=IGI;IEP;ISS] [GO:0006285
"base-excision repair, AP site formation" evidence=IGI;IMP]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0008725 "DNA-3-methyladenine glycosylase
activity" evidence=IEA] [GO:0043916 "DNA-7-methylguanine
glycosylase activity" evidence=IEA] [GO:0052821
"DNA-7-methyladenine glycosylase activity" evidence=IEA]
InterPro:IPR000035 InterPro:IPR003265 InterPro:IPR003583
InterPro:IPR011257 Pfam:PF00730 PROSITE:PS00516 SMART:SM00278
SMART:SM00478 SGD:S000000944 GO:GO:0005634 GO:GO:0008725
Gene3D:1.10.340.30 SUPFAM:SSF48150 eggNOG:COG0122 KO:K01247
GO:GO:0003905 GO:GO:0052822 GO:GO:0052821 GO:GO:0043916
GO:GO:0006307 Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677
EMBL:BK006939 EMBL:U18917 GO:GO:0006285 OrthoDB:EOG45HW6S
EMBL:X56662 EMBL:X57781 EMBL:AY692938 PIR:S12498 RefSeq:NP_011069.1
ProteinModelPortal:P22134 SMR:P22134 DIP:DIP-6599N IntAct:P22134
MINT:MINT-675790 STRING:P22134 EnsemblFungi:YER142C GeneID:856885
KEGG:sce:YER142C CYGD:YER142c HOGENOM:HOG000113466 OMA:WSAKMFA
NextBio:983278 Genevestigator:P22134 GermOnline:YER142C
Uniprot:P22134
Length = 296
Score = 149 (57.5 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 52/162 (32%), Positives = 81/162 (50%)
Query: 135 LRNADRQLASLIDIHPPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAG 194
L+N + L L + P T + + F+ L +IL QQ++ +A SI R ++L GG
Sbjct: 62 LKNNEFTLY-LKETQVPNTLEDY---FIRLASTILSQQISGQAAESIKARVVSLYGG--- 114
Query: 195 VVPETVLALT----PQQLRQI---GVSGRKASYLHDLA----RKYQNGILSDSAIVNMDD 243
P+ + P + +I G+S RK YL LA KY++ I + D+
Sbjct: 115 AFPDYKILFEDFKDPAKCAEIAKCGLSKRKMIYLESLAVYFTEKYKD-IEKLFGQKDNDE 173
Query: 244 KSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKG 285
+ + +++T V GIG WS MF+I L R DV DLG+ +G
Sbjct: 174 EVIESLVTNVKGIGPWSAKMFLISGLKRMDVFAPEDLGIARG 215
Score = 54 (24.1 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 301 MDQLCEKWRPYRSVASWYLWR 321
M++ E + PYRSV + LWR
Sbjct: 257 MEKCSETFSPYRSVFMFILWR 277
>UNIPROTKB|Q10630 [details] [associations]
symbol:alkA "Probable bifunctional transcriptional
activator/DNA repair enzyme AlkA" species:1773 "Mycobacterium
tuberculosis" [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0006307 "DNA dealkylation
involved in DNA repair" evidence=IDA] [GO:0051409 "response to
nitrosative stress" evidence=IDA] InterPro:IPR003265
InterPro:IPR003583 InterPro:IPR004026 InterPro:IPR009057
InterPro:IPR011257 InterPro:IPR018060 InterPro:IPR018062
Pfam:PF00730 Pfam:PF02805 Pfam:PF12833 PROSITE:PS00041
PROSITE:PS01124 SMART:SM00278 SMART:SM00342 SMART:SM00478
GO:GO:0005886 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0008725 GO:GO:0046872 GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 eggNOG:COG0122 GO:GO:0052822
GO:GO:0052821 GO:GO:0043916 GO:GO:0006307 Gene3D:1.10.1670.10
Gene3D:3.30.310.20 InterPro:IPR010316 InterPro:IPR023170
Pfam:PF06029 SMART:SM01009 EMBL:BX842576 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:3.40.10.10 SUPFAM:SSF57884
GO:GO:0051409 GO:GO:0008168 EMBL:U65786 PIR:A70769
RefSeq:NP_215833.1 RefSeq:NP_335806.1 RefSeq:YP_006514694.1
ProteinModelPortal:Q10630 SMR:Q10630
EnsemblBacteria:EBMYCT00000003926 EnsemblBacteria:EBMYCT00000071713
GeneID:13319902 GeneID:886916 GeneID:924701 KEGG:mtc:MT1358
KEGG:mtu:Rv1317c KEGG:mtv:RVBD_1317c PATRIC:18124756
TubercuList:Rv1317c HOGENOM:HOG000129321 KO:K13529 OMA:RCRPDSA
ProtClustDB:CLSK791096 Uniprot:Q10630
Length = 496
Score = 126 (49.4 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 59/222 (26%), Positives = 101/222 (45%)
Query: 120 RPLSSEGEVEAAIRHLRNADRQLASLIDIHP----PPTFDSFHTPFLALTRSILYQQLAF 175
R L + + EA + L AD L +++ P P T D F R++L QQ++
Sbjct: 278 RLLDLDADPEAIVEAL-GADPDLRAVVGKAPGQRIPRTVDE--AEFAV--RAVLAQQVST 332
Query: 176 KAGTSIYTRFIALCGGEA----GVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNG 231
KA ++ R +A G G + T ++ +QL +I G A + ++ N
Sbjct: 333 KAASTHAGRLVAAYGRPVHDRHGALTHTFPSI--EQLAEID-PGHLA--VPKARQRTINA 387
Query: 232 I---LSDSAIV---NMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKG 285
+ L+D ++V D + L + G+G W+ + + L PD P +DLG+R
Sbjct: 388 LVASLADKSLVLDAGCDWQRARGQLLALPGVGPWTAEVIAMRGLGDPDAFPASDLGLR-- 445
Query: 286 VQLLYSLEELPRPSQMDQLC---EKWRPYRSVASWYLWRFVE 324
+ ++L P+Q L +WRP+RS A+ +LW +E
Sbjct: 446 ----LAAKKLGLPAQRRALTVHSARWRPWRSYATQHLWTTLE 483
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 373 308 0.00078 116 3 11 22 0.38 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 14
No. of states in DFA: 614 (65 KB)
Total size of DFA: 208 KB (2116 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.77u 0.08s 24.85t Elapsed: 00:00:01
Total cpu time: 24.78u 0.08s 24.86t Elapsed: 00:00:01
Start: Sat May 11 08:38:11 2013 End: Sat May 11 08:38:12 2013