BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039604
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H56|A Chain A, Crystal Structure Of Dna-3-methyladenine Glycosidase
(10174367) From Bacillus Halodurans At 2.55 A Resolution
pdb|2H56|B Chain B, Crystal Structure Of Dna-3-methyladenine Glycosidase
(10174367) From Bacillus Halodurans At 2.55 A Resolution
pdb|2H56|C Chain C, Crystal Structure Of Dna-3-methyladenine Glycosidase
(10174367) From Bacillus Halodurans At 2.55 A Resolution
Length = 233
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 95/183 (51%), Gaps = 1/183 (0%)
Query: 139 DRQLASLIDIHPPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPE 198
D +L I+I + PF +L SI+ QQL+ KA ++IY R L GG A PE
Sbjct: 30 DSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGG-ALEKPE 88
Query: 199 TVLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGS 258
+ ++ + LRQ GVS RK Y+ + ++G L + + + ++ LT + GIG
Sbjct: 89 QLYRVSDEALRQAGVSKRKIEYIRHVCEHVESGRLDFTELEGAEATTVIEKLTAIKGIGQ 148
Query: 259 WSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWY 318
W+ F FSL R DVL + D+G+++G + LY E + + W PY +VA Y
Sbjct: 149 WTAEXFXXFSLGRLDVLSVGDVGLQRGAKWLYGNGEGDGKKLLIYHGKAWAPYETVACLY 208
Query: 319 LWR 321
LW+
Sbjct: 209 LWK 211
>pdb|3S6I|A Chain A, Schizosaccaromyces Pombe 3-Methyladenine Dna Glycosylase
(Mag1) In Complex With Abasic-Dna.
pdb|3S6I|D Chain D, Schizosaccaromyces Pombe 3-Methyladenine Dna Glycosylase
(Mag1) In Complex With Abasic-Dna
Length = 228
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 4/192 (2%)
Query: 134 HLRNAD---RQLASLIDIHPPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCG 190
HL D ++L L+ + P P+ L R++ QQL KA +I+ RF ++
Sbjct: 21 HLSGLDENWKRLVKLVGNYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRFKSISN 80
Query: 191 GEAGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGIL-SDSAIVNMDDKSLFTM 249
PE + + + +R G S RK L +A +G++ + + ++ L
Sbjct: 81 NGQFPTPEEIRDMDFEIMRACGFSARKIDSLKSIAEATISGLIPTKEEAERLSNEELIER 140
Query: 250 LTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWR 309
LT + GIG W+V M +IFSL+R DV+P +DL +R G + L+ L ++P + + E
Sbjct: 141 LTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLPKIPTKMYVLKHSEICA 200
Query: 310 PYRSVASWYLWR 321
P+R+ A+WYLW+
Sbjct: 201 PFRTAAAWYLWK 212
>pdb|4B21|A Chain A, Unprecedented Sculpting Of Dna At Abasic Sites By Dna
Glycosylase Homolog Mag2
pdb|4B22|A Chain A, Unprecedented Sculpting Of Dna At Abasic Sites By Dna
Glycosylase Homolog Mag2
pdb|4B23|A Chain A, Unprecedented Sculpting Of Dna At Abasic Sites By Dna
Glycoslase Homolog Mag2
pdb|4B24|A Chain A, Unprecedented Sculpting Of Dna At Abasic Sites By Dna
Glycoslase Homolog Mag2
Length = 232
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 110/213 (51%), Gaps = 6/213 (2%)
Query: 114 VPRIIARPLSSEGEVEAAIRHLRNADRQLASLIDIHPPPTFDSF--HTPFLALTRSILYQ 171
VPR +S + + + A +HL + D + +SL+ P T H P+ + R+I Q
Sbjct: 14 VPR--GSHMSKDSDYKRAEKHLSSIDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQ 71
Query: 172 QLAFKAGTSIYTRFIALCG-GEAGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQN 230
+L+ A SI +F C + P+ ++ + L + G S K+ +H +A N
Sbjct: 72 KLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETLHECGFSKLKSQEIHIVAEAALN 131
Query: 231 G-ILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLL 289
I S S I M ++ L L+ + G+ W++ M+ IF+L R D++P +D ++ +
Sbjct: 132 KQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEF 191
Query: 290 YSLEELPRPSQMDQLCEKWRPYRSVASWYLWRF 322
+ L P+ ++++L + +PYR++A+WYLW+
Sbjct: 192 FGLSSKPQTEEVEKLTKPCKPYRTIAAWYLWQI 224
>pdb|4HSB|A Chain A, S. Pombe 3-methyladenine Dna Glycosylase-like Protein Mag2
Bound To Damaged Dna
Length = 217
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 107/205 (52%), Gaps = 4/205 (1%)
Query: 122 LSSEGEVEAAIRHLRNADRQLASLIDIHPPPTFDSF--HTPFLALTRSILYQQLAFKAGT 179
+S + + + A +HL + D + +SL+ P T H P+ + R+I Q+L+ A
Sbjct: 5 MSKDSDYKRAEKHLSSIDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATN 64
Query: 180 SIYTRFIALCG-GEAGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNG-ILSDSA 237
SI +F C + P+ ++ + L + G S K+ +H +A N I S S
Sbjct: 65 SIINKFCTQCSDNDEFPTPKQIMETDVETLHECGFSKLKSQEIHIVAEAALNKQIPSKSE 124
Query: 238 IVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPR 297
I M ++ L L+ + G+ W++ M+ IF+L R D++P +D ++ + + L P+
Sbjct: 125 IEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLSSKPQ 184
Query: 298 PSQMDQLCEKWRPYRSVASWYLWRF 322
++++L + +PYR++A+WYLW+
Sbjct: 185 TEEVEKLTKPCKPYRTIAAWYLWQI 209
>pdb|2YG9|A Chain A, Structure Of An Unusual 3-Methyladenine Dna Glycosylase Ii
( Alka) From Deinococcus Radiodurans
pdb|2YG9|B Chain B, Structure Of An Unusual 3-Methyladenine Dna Glycosylase Ii
( Alka) From Deinococcus Radiodurans
Length = 225
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 87/169 (51%), Gaps = 9/169 (5%)
Query: 152 PTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPETVLALTPQQLRQI 211
P PF L RS+ QQL+ KA +IY R L GG VVP +L ++ LR +
Sbjct: 53 PVLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGG---VVPAALLKVSGDDLRGV 109
Query: 212 GVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHR 271
G+S K + A +G + + + D+ + L + GIG W+ MF++F+L R
Sbjct: 110 GLSWAKVRTVQAAAAAAVSGQIDFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLFALAR 169
Query: 272 PDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLW 320
PDV DL +R+GV+ LY E+ + +W PYRS+AS YLW
Sbjct: 170 PDVFSSGDLALRQGVERLYPGED------WRDVTARWAPYRSLASRYLW 212
>pdb|2YG8|A Chain A, Structure Of An Unusual 3-Methyladenine Dna Glycosylase Ii
( Alka) From Deinococcus Radiodurans
pdb|2YG8|B Chain B, Structure Of An Unusual 3-Methyladenine Dna Glycosylase Ii
( Alka) From Deinococcus Radiodurans
Length = 225
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 86/169 (50%), Gaps = 9/169 (5%)
Query: 152 PTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPETVLALTPQQLRQI 211
P PF L RS+ QQL+ KA +IY R L GG VVP +L ++ LR +
Sbjct: 53 PVLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGG---VVPAALLKVSGDDLRGV 109
Query: 212 GVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHR 271
G+S K + A +G + + + D+ + L + GIG W+ F++F+L R
Sbjct: 110 GLSWAKVRTVQAAAAAAVSGQIDFAHLSGQPDELVIAELVQLPGIGRWTAEXFLLFALAR 169
Query: 272 PDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLW 320
PDV DL +R+GV+ LY E+ + +W PYRS+AS YLW
Sbjct: 170 PDVFSSGDLALRQGVERLYPGED------WRDVTARWAPYRSLASRYLW 212
>pdb|2JHJ|A Chain A, 3-Methyladenine Dna-Glycosylase From Archaeoglobus
Fulgidus
pdb|2JHJ|B Chain B, 3-Methyladenine Dna-Glycosylase From Archaeoglobus
Fulgidus
Length = 295
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 74/156 (47%), Gaps = 15/156 (9%)
Query: 159 TPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEA---GV------VPETVLALTPQQLR 209
+ F + ++I+ QQ++F + + + G E G+ E +L + LR
Sbjct: 117 SVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAILKAGVEGLR 176
Query: 210 QIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSL 269
+ G+S RKA + ++A++ + + ++ + LT GIG W+ + + +L
Sbjct: 177 ECGLSRRKAELIVEIAKE-----ENLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSMAL 231
Query: 270 HRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLC 305
+ +V P +DLGVR+ V LY E+ ++ ++
Sbjct: 232 GK-NVFPADDLGVRRAVSRLYFNGEIQSAEKVREIA 266
>pdb|2JHN|A Chain A, 3-Methyladenine Dna-Glycosylase From Archaeoglobus
Fulgidus
pdb|2JHN|B Chain B, 3-Methyladenine Dna-Glycosylase From Archaeoglobus
Fulgidus
Length = 295
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 74/156 (47%), Gaps = 15/156 (9%)
Query: 159 TPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEA---GV------VPETVLALTPQQLR 209
+ F + ++I+ QQ++F + + + G E G+ E +L + LR
Sbjct: 117 SVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAILKAGVEGLR 176
Query: 210 QIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSL 269
+ G+S RKA + ++A++ + + ++ + LT GIG W+ + + +L
Sbjct: 177 ECGLSRRKAELIVEIAKE-----ENLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSIAL 231
Query: 270 HRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLC 305
+ +V P +DLGVR+ V LY E+ ++ ++
Sbjct: 232 GK-NVFPADDLGVRRAVSRLYFNGEIQSAEKVREIA 266
>pdb|3OGD|A Chain A, Alka Undamaged Dna Complex: Interrogation Of A G:c Base
Pair
Length = 289
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 72/178 (40%), Gaps = 21/178 (11%)
Query: 151 PPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPETVL--------A 202
P D+F R+IL Q ++ + R L G PE + A
Sbjct: 115 PGCVDAFEQG----VRAILGQCVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAA 170
Query: 203 LTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVH 262
PQ L+ +G+ ++A L LA G L + + D + L GIG W+ +
Sbjct: 171 ADPQALKALGMPLKRAEALIHLANAALEGTLPMT--IPGDVEQAMKTLQTFPGIGRWTAN 228
Query: 263 MFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLW 320
F + DV +D +++ + P+Q+ + E+W+P+RS A ++W
Sbjct: 229 YFALRGWQAKDVFLPDDYLIKQRFPGM-------TPAQIRRYAERWKPWRSYALLHIW 279
>pdb|3OH6|A Chain A, Alka Undamaged Dna Complex: Interrogation Of A C:g Base
Pair
pdb|3OH9|A Chain A, Alka Undamaged Dna Complex: Interrogation Of A T:a Base
Pair
Length = 289
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 21/178 (11%)
Query: 151 PPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPETVLALTPQQ--- 207
P D+F R+IL Q ++ + R L G PE + TPQ+
Sbjct: 115 PGCVDAFEQG----VRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAA 170
Query: 208 -----LRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVH 262
L+ +G+ ++A L LA G L + + D + L GIG W+ +
Sbjct: 171 ADPQALKALGMPLKRAEALIHLANAALEGTLPMT--IPGDVEQAMKTLQTFPGIGRWTAN 228
Query: 263 MFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLW 320
F + DV +D +++ + P+Q+ + E+W+P+RS A ++W
Sbjct: 229 YFALRGWQAKDVFLPDDCLIKQRFPGM-------TPAQIRRYAERWKPWRSYALLHIW 279
>pdb|1MPG|A Chain A, 3-Methyladenine Dna Glycosylase Ii From Escherichia Coli
pdb|1MPG|B Chain B, 3-Methyladenine Dna Glycosylase Ii From Escherichia Coli
pdb|1DIZ|A Chain A, Crystal Structure Of E. Coli 3-Methyladenine Dna
Glycosylase (Alka) Complexed With Dna
pdb|1DIZ|B Chain B, Crystal Structure Of E. Coli 3-Methyladenine Dna
Glycosylase (Alka) Complexed With Dna
pdb|1PVS|A Chain A, 3-Methyladenine Glcosylase Ii(Alka) Hypoxanthine Complex
pdb|1PVS|B Chain B, 3-Methyladenine Glcosylase Ii(Alka) Hypoxanthine Complex
pdb|3CVS|A Chain A, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:adenine Base Pair
pdb|3CVS|B Chain B, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:adenine Base Pair
pdb|3CVS|C Chain C, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:adenine Base Pair
pdb|3CVS|D Chain D, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:adenine Base Pair
pdb|3CVT|A Chain A, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CVT|B Chain B, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CVT|C Chain C, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CVT|D Chain D, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CW7|A Chain A, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CW7|B Chain B, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CW7|C Chain C, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CW7|D Chain D, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CWA|A Chain A, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CWA|B Chain B, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CWA|C Chain C, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CWA|D Chain D, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CWS|A Chain A, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxyinosine:thymine Base Pair
pdb|3CWS|B Chain B, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxyinosine:thymine Base Pair
pdb|3CWS|C Chain C, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxyinosine:thymine Base Pair
pdb|3CWS|D Chain D, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxyinosine:thymine Base Pair
pdb|3CWT|A Chain A, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxyinosine:adenine Base Pair
pdb|3CWT|B Chain B, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxyinosine:adenine Base Pair
pdb|3CWT|C Chain C, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxyinosine:adenine Base Pair
pdb|3CWT|D Chain D, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxyinosine:adenine Base Pair
pdb|3CWU|A Chain A, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxy-1,N6-Ethenoadenine:thymine Base Pair
pdb|3CWU|B Chain B, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxy-1,N6-Ethenoadenine:thymine Base Pair
pdb|3CWU|C Chain C, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxy-1,N6-Ethenoadenine:thymine Base Pair
pdb|3CWU|D Chain D, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxy-1,N6-Ethenoadenine:thymine Base Pair
pdb|3D4V|A Chain A, Crystal Structure Of An Alka HostGUEST COMPLEX
N7methylguanine:cytosine Base Pair
pdb|3D4V|B Chain B, Crystal Structure Of An Alka HostGUEST COMPLEX
N7methylguanine:cytosine Base Pair
pdb|3D4V|C Chain C, Crystal Structure Of An Alka HostGUEST COMPLEX
N7methylguanine:cytosine Base Pair
pdb|3D4V|D Chain D, Crystal Structure Of An Alka HostGUEST COMPLEX
N7methylguanine:cytosine Base Pair
Length = 282
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 21/178 (11%)
Query: 151 PPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPETVLALTPQQ--- 207
P D+F R+IL Q ++ + R L G PE + TPQ+
Sbjct: 108 PGCVDAFEQG----VRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAA 163
Query: 208 -----LRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVH 262
L+ +G+ ++A L LA G L + + D + L GIG W+ +
Sbjct: 164 ADPQALKALGMPLKRAEALIHLANAALEGTLPMT--IPGDVEQAMKTLQTFPGIGRWTAN 221
Query: 263 MFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLW 320
F + DV +D +++ + P+Q+ + E+W+P+RS A ++W
Sbjct: 222 YFALRGWQAKDVFLPDDYLIKQRFPGM-------TPAQIRRYAERWKPWRSYALLHIW 272
>pdb|3I0X|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA
CONTAINING ADENINE Opposite To 8-Oxog
Length = 291
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 214 SGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPD 273
+G +A YL D + NG L+ I +++D L G+G M+FS+ +
Sbjct: 177 AGFRAKYLKDTVDRIYNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYS 236
Query: 274 VLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLWRF 322
P+ D V+K + LY ++ D EK+ A YL+ +
Sbjct: 237 AFPV-DTWVKKAMMSLYVAPDVSLKKIRDFGREKFGSLSGFAQQYLFYY 284
>pdb|3F10|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine Dna Glycosylase In Complex With
8-Oxoguanosine
Length = 292
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 214 SGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPD 273
+G +A YL D + NG L+ I +++D L G+G M+FS+ +
Sbjct: 177 AGFRAKYLKDTVDRIYNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYS 236
Query: 274 VLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLWRF 322
P+ D V+K + LY ++ D EK+ A YL+ +
Sbjct: 237 AFPV-DTWVKKAMMSLYVAPDVSLKKIRDFGREKFGSLSGFAQQYLFYY 284
>pdb|3I0W|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA
CONTAINING CYTOSINE Opposite To 8-Oxog
Length = 290
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 214 SGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPD 273
+G +A YL D + NG L+ I +++D L G+G M+FS+ +
Sbjct: 177 AGFRAKYLKDTVDRIYNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYS 236
Query: 274 VLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLWRF 322
P+ D V+K + LY ++ D EK+ A YL+ +
Sbjct: 237 AFPV-DTWVKKAMMSLYVAPDVSLKKIRDFGREKFGSLSGFAQQYLFYY 284
>pdb|3F0Z|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN ITS APO-Form
Length = 292
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
Query: 214 SGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPD 273
+G +A YL D + NG L+ I +++D L G+G +FS +
Sbjct: 177 AGFRAKYLKDTVDRIYNGELNLEYIKSLNDNECHEELKKFXGVGPKVADCIXLFSXQKYS 236
Query: 274 VLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLWRF 322
P+ D V+K LY ++ D EK+ A YL+ +
Sbjct: 237 AFPV-DTWVKKAXXSLYVAPDVSLKKIRDFGREKFGSLSGFAQQYLFYY 284
>pdb|1NAS|A Chain A, Sepiapterin Reductase Complexed With N-acetyl Serotonin
pdb|1OAA|A Chain A, Mouse Sepiapterin Reductase Complexed With Nadp And
Oxaloacetate
Length = 259
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 270 HRPD---VLPINDLGVRKGVQ-LLYSLEELPRPSQMDQL 304
+PD VL DLG GVQ LL ++ ELPRP + +L
Sbjct: 56 QQPDLKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRL 94
>pdb|1SEP|A Chain A, Mouse Sepiapterin Reductase Complexed With Nadp And
Sepiapterin
Length = 261
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 270 HRPD---VLPINDLGVRKGVQ-LLYSLEELPRPSQMDQL 304
+PD VL DLG GVQ LL ++ ELPRP + +L
Sbjct: 58 QQPDLKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRL 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,564,639
Number of Sequences: 62578
Number of extensions: 298332
Number of successful extensions: 688
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 20
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)