BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039604
(373 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q92383|MAG1_SCHPO DNA-3-methyladenine glycosylase 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mag1 PE=1 SV=1
Length = 228
Score = 108 bits (269), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 4/192 (2%)
Query: 134 HLRNAD---RQLASLIDIHPPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCG 190
HL D ++L L+ + P P+ L R++ QQL KA +I+ RF ++
Sbjct: 21 HLSGLDENWKRLVKLVGNYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRFKSISN 80
Query: 191 GEAGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGIL-SDSAIVNMDDKSLFTM 249
PE + + + +R G S RK L +A +G++ + + ++ L
Sbjct: 81 NGQFPTPEEIRDMDFEIMRACGFSARKIDSLKSIAEATISGLIPTKEEAERLSNEELIER 140
Query: 250 LTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWR 309
LT + GIG W+V M +IFSL+R DV+P +DL +R G + L+ L ++P + + E
Sbjct: 141 LTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLPKIPTKMYVLKHSEICA 200
Query: 310 PYRSVASWYLWR 321
P+R+ A+WYLW+
Sbjct: 201 PFRTAAAWYLWK 212
>sp|O94468|MAG2_SCHPO Probable DNA-3-methyladenine glycosylase 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mag2 PE=1 SV=1
Length = 213
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 106/205 (51%), Gaps = 4/205 (1%)
Query: 122 LSSEGEVEAAIRHLRNADRQLASLIDIHPPPTFDSF--HTPFLALTRSILYQQLAFKAGT 179
+S + + + A +HL + D + +SL+ P T H P+ + R+I Q+L+ A
Sbjct: 1 MSKDSDYKRAEKHLSSIDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATN 60
Query: 180 SIYTRFIALCGGEAGV-VPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNG-ILSDSA 237
SI +F C P+ ++ + L + G S K+ +H +A N I S S
Sbjct: 61 SIINKFCTQCSDNDEFPTPKQIMETDVETLHECGFSKLKSQEIHIVAEAALNKQIPSKSE 120
Query: 238 IVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPR 297
I M ++ L L+ + G+ W++ M+ IF+L R D++P +D ++ + + L P+
Sbjct: 121 IEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLSSKPQ 180
Query: 298 PSQMDQLCEKWRPYRSVASWYLWRF 322
++++L + +PYR++A+WYLW+
Sbjct: 181 TEEVEKLTKPCKPYRTIAAWYLWQI 205
>sp|O31544|YFJP_BACSU Putative DNA-3-methyladenine glycosylase YfjP OS=Bacillus subtilis
(strain 168) GN=yfjP PE=3 SV=1
Length = 287
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 107/214 (50%), Gaps = 11/214 (5%)
Query: 118 IARPLSSEGEVEAAIRHLRNADRQLASLIDIHP--PPTFDSFHTPFLALTRSILYQQLAF 175
I R E ++ + H L+++ + H P D ++ + + + I++QQL
Sbjct: 78 IKRIFQWENHLQHVLDHFSKT--SLSAIFEEHAGTPLVLD--YSVYNCMMKCIIHQQLNL 133
Query: 176 KAGTSIYTRFIALCGGEAGVV-----PETVLALTPQQLRQIGVSGRKASYLHDLARKYQN 230
++ RF+ G + V PET+ L Q LR + S RKA Y D +R
Sbjct: 134 SFAYTLTERFVHAFGEQKDGVWCYPKPETIAELDYQDLRDLQFSMRKAEYTIDTSRMIAE 193
Query: 231 GILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLY 290
G LS S + +M D+ + L + GIG W+V ++F L RP++ P+ D+G++ ++ +
Sbjct: 194 GTLSLSELPHMADEDIMKKLIKIRGIGPWTVQNVLMFGLGRPNLFPLADIGLQNAIKRHF 253
Query: 291 SLEELPRPSQMDQLCEKWRPYRSVASWYLWRFVE 324
L++ P M + ++W PY S AS YLWR +E
Sbjct: 254 QLDDKPAKDVMLAMSKEWEPYLSYASLYLWRSIE 287
>sp|P37878|3MGA_BACSU DNA-3-methyladenine glycosylase OS=Bacillus subtilis (strain 168)
GN=alkA PE=1 SV=1
Length = 303
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 85/170 (50%), Gaps = 9/170 (5%)
Query: 161 FLALTRSILYQQLAFKAGTSIYTRF-------IALCGGEAGVVP--ETVLALTPQQLRQI 211
F AL +L QQ+ S+ +F I G + V P E + LTP L I
Sbjct: 131 FEALCWGVLGQQINLAFAYSLKKQFVEAFGDSIEWNGKKYWVFPPYERIARLTPTDLADI 190
Query: 212 GVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHR 271
++ +K+ Y+ +AR +G LS ++ M+ K L + GIG W+ + ++ L
Sbjct: 191 KMTVKKSEYIIGIARLMASGELSREKLMKMNFKDAEKNLIKIRGIGPWTANYVLMRCLRF 250
Query: 272 PDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLWR 321
P PI+D+G+ +++L ++ P ++ ++ W+ ++S A++YLWR
Sbjct: 251 PTAFPIDDVGLIHSIKILRNMNRKPTKDEILEISVPWKEWQSYATFYLWR 300
>sp|P22134|MAG_YEAST DNA-3-methyladenine glycosylase OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MAG1 PE=1 SV=1
Length = 296
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 101/224 (45%), Gaps = 45/224 (20%)
Query: 135 LRNADRQLASLIDIHPPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAG 194
L+N + L L + P T + + F+ L +IL QQ++ +A SI R ++L GG
Sbjct: 62 LKNNEFTL-YLKETQVPNTLEDY---FIRLASTILSQQISGQAAESIKARVVSLYGG--- 114
Query: 195 VVPETVLALTP-------QQLRQIGVSGRKASYLHDLA----RKYQNGILSDSAIVNMDD 243
P+ + ++ + G+S RK YL LA KY++ I + D+
Sbjct: 115 AFPDYKILFEDFKDPAKCAEIAKCGLSKRKMIYLESLAVYFTEKYKD-IEKLFGQKDNDE 173
Query: 244 KSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYS----LE-ELPRP 298
+ + +++T V GIG WS MF+I L R DV DLG+ +G S LE EL R
Sbjct: 174 EVIESLVTNVKGIGPWSAKMFLISGLKRMDVFAPEDLGIARGFSKYLSDKPELEKELMRE 233
Query: 299 SQ---------------------MDQLCEKWRPYRSVASWYLWR 321
+ M++ E + PYRSV + LWR
Sbjct: 234 RKVVKKSKIKHKKYNWKIYDDDIMEKCSETFSPYRSVFMFILWR 277
>sp|Q10630|ALKA_MYCTU Probable bifunctional transcriptional activator/DNA repair enzyme
AlkA OS=Mycobacterium tuberculosis GN=alkA PE=3 SV=1
Length = 496
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 34/178 (19%)
Query: 165 TRSILYQQLAFKAGTSIYTRFIALCG----GEAGVVPETVLALTPQQLRQIGVSGRKASY 220
R++L QQ++ KA ++ R +A G G + T ++ +QL +I G A
Sbjct: 322 VRAVLAQQVSTKAASTHAGRLVAAYGRPVHDRHGALTHTFPSI--EQLAEID-PGHLA-- 376
Query: 221 LHDLARKYQNGILSDSAIVNMDDKSLF-----------TMLTMVNGIGSWSVHMFMIFSL 269
+ + Q I ++ + ++ DKSL L + G+G W+ + + L
Sbjct: 377 ---VPKARQRTI--NALVASLADKSLVLDAGCDWQRARGQLLALPGVGPWTAEVIAMRGL 431
Query: 270 HRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLC---EKWRPYRSVASWYLWRFVE 324
PD P +DLG+R + ++L P+Q L +WRP+RS A+ +LW +E
Sbjct: 432 GDPDAFPASDLGLR------LAAKKLGLPAQRRALTVHSARWRPWRSYATQHLWTTLE 483
>sp|P04395|3MG2_ECOLI DNA-3-methyladenine glycosylase 2 OS=Escherichia coli (strain K12)
GN=alkA PE=1 SV=1
Length = 282
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 25/180 (13%)
Query: 151 PPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPETVLALTPQQ--- 207
P D+F R+IL Q ++ + R L G PE + TPQ+
Sbjct: 108 PGCVDAFEQG----VRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAA 163
Query: 208 -----LRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVH 262
L+ +G+ ++A L LA G L + + D + L GIG W+ +
Sbjct: 164 ADPQALKALGMPLKRAEALIHLANAALEGTLPMT--IPGDVEQAMKTLQTFPGIGRWTAN 221
Query: 263 MFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELP--RPSQMDQLCEKWRPYRSVASWYLW 320
F + DV +D ++ + P P+Q+ + E+W+P+RS A ++W
Sbjct: 222 YFALRGWQAKDVFLPDDYLIK---------QRFPGMTPAQIRRYAERWKPWRSYALLHIW 272
>sp|Q54V85|Y6038_DICDI Putative uncharacterized protein DDB_G0280555 OS=Dictyostelium
discoideum GN=DDB_G0280555 PE=4 SV=2
Length = 1469
Score = 37.7 bits (86), Expect = 0.12, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 4 QTQSQTQNQPE-PQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQT 57
QTQ QT+ QP+ PQP+P P P + T ++ N + N+TPQT
Sbjct: 721 QTQLQTKIQPKSPQPQPTAAPEPQKPPTPSI---------VKNQMHSQINITPQT 766
>sp|Q0BS88|SYE2_GRABC Glutamate--tRNA ligase 2 OS=Granulibacter bethesdensis (strain ATCC
BAA-1260 / CGDNIH1) GN=gltX2 PE=3 SV=1
Length = 447
Score = 35.4 bits (80), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 182 YTRFIALCGGEAGVVPETVLALTPQQLRQIGVSGRKASY---LHDLARKYQNGIL----- 233
Y R + L G A V +L +TP+Q Q +G++ + L D +++G+L
Sbjct: 105 YKRELRLKQGRAPVYDRAMLKMTPEQRAQAEANGKRPYWRFLLSDRTVGWRDGVLGPRQV 164
Query: 234 -----SDSAIVNMDDKSLFTMLTMVNGIGSWSVHMF 264
SD ++ D L+T ++V+ I + H+
Sbjct: 165 KLQAISDPVVIRADGTPLYTFTSVVDDIATGVTHII 200
>sp|P07207|NOTCH_DROME Neurogenic locus Notch protein OS=Drosophila melanogaster GN=N PE=1
SV=3
Length = 2703
Score = 31.6 bits (70), Expect = 9.2, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 75 SPDNGVDQASSSQPTESSKATSAKSTKS 102
SPDNG+D S + SSK TSA S K+
Sbjct: 2210 SPDNGLDATGSLRRKASSKKTSAASKKA 2237
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,737,965
Number of Sequences: 539616
Number of extensions: 5667345
Number of successful extensions: 38857
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 430
Number of HSP's that attempted gapping in prelim test: 35542
Number of HSP's gapped (non-prelim): 3154
length of query: 373
length of database: 191,569,459
effective HSP length: 119
effective length of query: 254
effective length of database: 127,355,155
effective search space: 32348209370
effective search space used: 32348209370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)