RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 039604
(373 letters)
>gnl|CDD|223200 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA
glycosylase [DNA replication, recombination, and
repair].
Length = 285
Score = 192 bits (489), Expect = 7e-59
Identities = 80/221 (36%), Positives = 115/221 (52%), Gaps = 13/221 (5%)
Query: 114 VPRIIARPLSSEGEVEAAIRHLRNADRQLASLIDIHPPPTFDSF--------HTPFLALT 165
+ A ++EAA+R L + D LA +ID P PF AL
Sbjct: 51 AGLVSASREPVAEDIEAALRRLFDLDPDLAPIIDALGPLPLLRAPGLRLPLAPDPFEALV 110
Query: 166 RSILYQQLAFKAGTSIYTRFIALCGGEAGVV-----PETVLALTPQQLRQIGVSGRKASY 220
R+IL QQ++ A I+ R ++L G + PE + A + LR+ G+SGRKA Y
Sbjct: 111 RAILSQQVSVAAAAKIWARLVSLYGNALEIYHSFPTPEQLAAADEEALRRCGLSGRKAEY 170
Query: 221 LHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDL 280
+ LAR G L S + + D+ LT + GIG W+ MF++F L RPDV P +DL
Sbjct: 171 IISLARAAAEGELDLSELKPLSDEEAIEELTALKGIGPWTAEMFLLFGLGRPDVFPADDL 230
Query: 281 GVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLWR 321
G+R+ ++ LY L P ++ +L E+W PYRS A+ YLWR
Sbjct: 231 GLRRAIKKLYRLPTRPTEKEVRELAERWGPYRSYAALYLWR 271
>gnl|CDD|216088 pfam00730, HhH-GPD, HhH-GPD superfamily base excision DNA repair
protein. This family contains a diverse range of
structurally related DNA repair proteins. The
superfamily is called the HhH-GPD family after its
hallmark Helix-hairpin-helix and Gly/Pro rich loop
followed by a conserved aspartate. This includes
endonuclease III, EC:4.2.99.18 and MutY an A/G-specific
adenine glycosylase, both have a C terminal 4Fe-4S
cluster. The family also includes 8-oxoguanine DNA
glycosylases. The methyl-CPG binding protein MBD4 also
contains a related domain that is a thymine DNA
glycosylase. The family also includes
DNA-3-methyladenine glycosylase II EC:3.2.2.21 and other
members of the AlkA family.
Length = 144
Score = 124 bits (314), Expect = 9e-35
Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 12/150 (8%)
Query: 166 RSILYQQLAFKAGTSIYTRFIALCGGEAGVVPETVLALTPQQLRQI----GVSGRKASYL 221
+IL QQ + KA I R G PE + ++LR++ G RKA Y+
Sbjct: 2 SAILSQQTSDKAANKITKRLFERYGF---PTPEDLAEADEEELRELIKGLGFYRRKAKYI 58
Query: 222 HDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLG 281
+LAR G L + + L + G+G W+ ++F+L RPDV P D
Sbjct: 59 KELARILVEGYLGLVPLDLEEL----EALLALPGVGRWTAEAVLLFALGRPDVFPAVDTH 114
Query: 282 VRKGVQLLYSLEELPRPSQMDQLCEK-WRP 310
VR+ + L ++ P ++++ E+ W P
Sbjct: 115 VRRVAKRLGLIDTKPPKKEVERELEELWPP 144
>gnl|CDD|238013 cd00056, ENDO3c, endonuclease III; includes endonuclease III
(DNA-(apurinic or apyrimidinic site) lyase), alkylbase
DNA glycosidases (Alka-family) and other DNA
glycosidases.
Length = 158
Score = 113 bits (286), Expect = 2e-30
Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 15/167 (8%)
Query: 161 FLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPETVLALTPQQLRQIGVS---GRK 217
F L IL QQ KA Y R G PE + A ++LR++ S RK
Sbjct: 1 FEVLVSEILSQQTTDKAVNKAYERLFERYG----PTPEALAAADEEELRELIRSLGYRRK 56
Query: 218 ASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPI 277
A YL +LAR G +DD L + G+G + ++ ++F+L PD P+
Sbjct: 57 AKYLKELARAIVEGFGGLV----LDDPDAREELLALPGVGRKTANVVLLFALG-PDAFPV 111
Query: 278 NDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRP--YRSVASWYLWRF 322
D VR+ ++ L + + P ++++L E+ P Y A+ L
Sbjct: 112 -DTHVRRVLKRLGLIPKKKTPEELEELLEELLPKPYWGEANQALMDL 157
>gnl|CDD|214684 smart00478, ENDO3c, endonuclease III. includes endonuclease III
(DNA-(apurinic or apyrimidinic site) lyase), alkylbase
DNA glycosidases (Alka-family) and other DNA
glycosidases.
Length = 149
Score = 69.2 bits (170), Expect = 3e-14
Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 23/158 (14%)
Query: 171 QQLAFKAGTSIYTRFIALCGGEAGVVPETVLALTPQQL----RQIGVSGRKASYLHDLAR 226
QQ + R PE + A ++L R +G RKA YL +LAR
Sbjct: 3 QQTTDERVNKATERLFEKFPT-----PEDLAAADEEELEELIRGLGFYRRKARYLIELAR 57
Query: 227 KYQNGILSDSAIVNMDD-KSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKG 285
++ + DD + L + G+G + + + F+L +P D V +
Sbjct: 58 I----LVEEYGGEVPDDREELLK----LPGVGRKTANAVLSFALGKP--FIPVDTHVLRI 107
Query: 286 VQLLYSLEELPRPSQMDQLCEKWRP---YRSVASWYLW 320
+ L +++ P ++++L EK P +R + +
Sbjct: 108 AKRLGLVDKKSTPEEVEKLLEKLLPEEDWRELNLLLID 145
>gnl|CDD|236671 PRK10308, PRK10308, 3-methyl-adenine DNA glycosylase II;
Provisional.
Length = 283
Score = 40.5 bits (95), Expect = 7e-04
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 197 PETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGI 256
PE + A PQ L+ +G+ ++A L LA G L + +++ L GI
Sbjct: 158 PERLAAADPQALKALGMPLKRAEALIHLANAALEGTLPLTIPGDVE--QAMKTLQTFPGI 215
Query: 257 GSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVAS 316
G W+ + F + DV +D +++ + P+Q+ + E+W+P+RS A
Sbjct: 216 GRWTANYFALRGWQAKDVFLPDDYLIKQRFPGM-------TPAQIRRYAERWKPWRSYAL 268
Query: 317 WYLW 320
++W
Sbjct: 269 LHIW 272
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 35.5 bits (82), Expect = 0.050
Identities = 22/110 (20%), Positives = 34/110 (30%), Gaps = 12/110 (10%)
Query: 7 SQTQNQPEPQPEPETQPPPNQDSTTALAVIPVQTETANNA--TITHANVTPQTSSPPSKI 64
+Q P+P P P+Q S A P T++ +PPS
Sbjct: 384 TQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTA 443
Query: 65 PLRPRKIRKLSPDNGVDQASSSQPTESSKATSAKSTKSRAIQQQQQTLTV 114
P Q + SK +S + R IQ++ + T
Sbjct: 444 P----------QAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATG 483
Score = 31.3 bits (71), Expect = 0.85
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 9/74 (12%)
Query: 2 VEQTQSQTQNQPEPQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSPP 61
+QS QP P+ TQP + + V + A PQ P
Sbjct: 400 PSPSQSSAAAQP-SAPQSATQPAGTPPTVSVDPPAAVPVNPPSTA--------PQAVRPA 450
Query: 62 SKIPLRPRKIRKLS 75
+ + K+S
Sbjct: 451 QFKEEKKIPVSKVS 464
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional.
Length = 141
Score = 33.6 bits (77), Expect = 0.051
Identities = 16/65 (24%), Positives = 17/65 (26%), Gaps = 5/65 (7%)
Query: 5 TQSQTQNQPEPQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSPPSKI 64
PEP P Q P T P A P + PPS
Sbjct: 80 APLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVP-----PAPAAAVPAPAAAPPPSDP 134
Query: 65 PLRPR 69
P PR
Sbjct: 135 PQPPR 139
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional.
Length = 256
Score = 34.2 bits (79), Expect = 0.068
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 3 EQTQSQTQNQPEPQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSPPS 62
EQT ++ + Q + + Q PP + P QT TA T A V Q ++P +
Sbjct: 109 EQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQT-TAPVQPQTPAPVRTQPAAPVT 167
Query: 63 KIPLRPRK 70
+ P+
Sbjct: 168 QAVEAPKV 175
Score = 28.5 bits (64), Expect = 4.9
Identities = 24/106 (22%), Positives = 36/106 (33%), Gaps = 7/106 (6%)
Query: 3 EQTQSQTQNQPEPQPE-PETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSPP 61
EQ Q+ + QP E P + P +T Q + T VTP +
Sbjct: 89 EQMQADMRQQPTQLSEVPYNEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTA 148
Query: 62 SKIPLRPRKIRKLSPDNGVDQASSSQPTESSKATSAKSTKSRAIQQ 107
P P +R A +Q E+ K + K + R + Q
Sbjct: 149 PVQPQTPAPVRTQPA------APVTQAVEAPKVEAEKEKEQRWMVQ 188
>gnl|CDD|219741 pfam08193, INO80_Ies4, INO80 complex subunit Ies4. The INO80
ATPase is a member of the SNF2 family of ATPases and
functions as an integral component of a multisubunit
ATP-dependent chromatin remodelling complex. This family
of proteins corresponds to the fungal Ies4 subunit of
INO80.
Length = 228
Score = 34.2 bits (78), Expect = 0.070
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 3/121 (2%)
Query: 15 PQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSPPSKIPLRPRKIRKL 74
P P E +P + S+ A +P + A++A T A T T +P K P+K K
Sbjct: 38 PSPVKEDEPSDSPASSAADPPVPSSVDNASDAASTPAAGTSATDTPRRKGGPGPKKGEKR 97
Query: 75 SPDNGVDQASSSQPTESSKATSAKSTKSRAIQQQQQTLTVPRIIARPLSSEGEVEAAIRH 134
S G ++S+P K K + + T + P ++ G + A +R
Sbjct: 98 SAGQGTTSETTSKP--RGKPGPKKKPRLDDGTLEGAKGTSSHRLG-PKANTGAINAGLRA 154
Query: 135 L 135
L
Sbjct: 155 L 155
>gnl|CDD|218658 pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein.
This family consists of several Neisseria meningitidis
TspB virulence factor proteins.
Length = 502
Score = 34.2 bits (78), Expect = 0.10
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 11 NQPEPQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSPPSKIPLRPRK 70
N P P+ P T+P P D P AN T P + + P + R RK
Sbjct: 343 NNPNPRENPGTRPNPEPD--------PDLNPDANPDTDGQPGTRPDSPAVPDRPNGRHRK 394
Query: 71 IRKLSPDNGV 80
RK D G+
Sbjct: 395 ERKEGEDGGL 404
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 33.6 bits (77), Expect = 0.12
Identities = 24/135 (17%), Positives = 36/135 (26%), Gaps = 18/135 (13%)
Query: 1 MVEQTQSQTQNQPEPQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSP 60
+ QPEP+P E PP + E P+
Sbjct: 46 AKVLEAPTEEPQPEPEPPEEQPKPPTEP--------ETPPE--------PTPPKPKEKPK 89
Query: 61 PSKIPLRPRKIRKLSPDN--GVDQASSSQPTESSKATSAKSTKSRAIQQQQQTLTVPRII 118
P K P +P+ K P V + S A A + ++ +
Sbjct: 90 PEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAAT 149
Query: 119 ARPLSSEGEVEAAIR 133
S + AIR
Sbjct: 150 GPSASYLSGLRRAIR 164
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 33.9 bits (78), Expect = 0.13
Identities = 26/139 (18%), Positives = 42/139 (30%), Gaps = 12/139 (8%)
Query: 4 QTQSQTQNQPE---PQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSP 60
+Q + P P PP A +QTE + + Q +
Sbjct: 75 LQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPTIQTEPGQLYPVQVPVMVTQNPAN 134
Query: 61 PSKI-PLRPRKIRKLSPDNGVDQASSSQPTESSKATSAKSTKSRAIQQQQQT--LTVPRI 117
P + R +++L G +S Q + + K+ Q QQQ T P+
Sbjct: 135 SPLDQPAQQRALQQLQQRYG--APASGQLP----SQQQSAQKNDESQLQQQPNGETPPQQ 188
Query: 118 IARPLSSEGEVEAAIRHLR 136
E E +R
Sbjct: 189 TDGAGDDESEALVRLREAD 207
Score = 29.7 bits (67), Expect = 2.5
Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 7/113 (6%)
Query: 3 EQTQSQTQNQPEPQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSPPS 62
Q+ PQP P+ P + A T T + A A
Sbjct: 51 PSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGP 110
Query: 63 KIPLRPRKIRKLSPDNGVDQASSSQPTESSKATSAKSTKSRAIQQQQQTLTVP 115
I P ++ + V Q ++ P + RA+QQ QQ P
Sbjct: 111 TIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQ-------QRALQQLQQRYGAP 156
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 33.4 bits (76), Expect = 0.22
Identities = 28/161 (17%), Positives = 49/161 (30%), Gaps = 17/161 (10%)
Query: 3 EQTQSQTQNQPEPQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSPPS 62
Q Q P P P P+ P D A + A + P+ P
Sbjct: 2923 PPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQP 2982
Query: 63 KIPLRPRKIRKLSPDNGVDQASSSQPTESSKATSAKSTKSRAIQQQQQTLTVPRIIARPL 122
+ +SS P + + S S+ + ++ ++T P + + L
Sbjct: 2983 APS--------------REAPASSTPPLTGHSLSRVSSWASSLALHEETDPPPVSLKQTL 3028
Query: 123 SSEGEVE---AAIRHLRNADRQLASLIDIHPPPTFDSFHTP 160
+ E A +++R +D PP D F
Sbjct: 3029 WPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHE 3069
Score = 28.8 bits (64), Expect = 5.8
Identities = 25/149 (16%), Positives = 38/149 (25%), Gaps = 17/149 (11%)
Query: 4 QTQSQTQNQPEPQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSPPSK 63
T++ P +PE P P P P P
Sbjct: 2890 AVSRSTESFALPPDQPERPPQP------QAPPPPQPQPQP-----------PPPPQPQPP 2932
Query: 64 IPLRPRKIRKLSPDNGVDQASSSQPTESSKATSAKSTKSRAIQQQQQTLTVPRIIARPLS 123
P PR L+P A A A+ + + P A S
Sbjct: 2933 PPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASS 2992
Query: 124 SEGEVEAAIRHLRNADRQLASLIDIHPPP 152
+ ++ + + LA + PPP
Sbjct: 2993 TPPLTGHSLSRVSSWASSLALHEETDPPP 3021
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 32.2 bits (74), Expect = 0.51
Identities = 23/91 (25%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 4 QTQSQTQNQPEPQPEPETQPPPNQDSTTALAVI---------PVQTETANNATITHANVT 54
++QS + + P P + PP T L P TA A+
Sbjct: 511 ESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQI 570
Query: 55 PQTSSPPSKIPLRPRKIRKL-SPDNGVDQAS 84
P SSPP IP P S +D+A+
Sbjct: 571 PADSSPPPPIPEEPTPSPTKDSSPEEIDKAA 601
>gnl|CDD|114726 pfam06020, Roughex, Drosophila roughex protein. This family
consists of several roughex (RUX) proteins specific to
Drosophila species. Roughex can influence the
intracellular distribution of cyclin A and is therefore
defined as a distinct and specialised cell cycle
inhibitor for cyclin A-dependent kinase activity. Rux is
though to regulate the metaphase to anaphase transition
during development.
Length = 334
Score = 31.1 bits (70), Expect = 0.98
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 13/81 (16%)
Query: 3 EQTQSQTQNQPEPQPEPET-QPPPNQDSTTA--LAVIPVQTETANNATITHANVTP---- 55
E TQ + P+P PE E QP P Q TA IPV T T ++ TP
Sbjct: 255 ENTQEEEDADPDPIPEVEQEQPAPQQAEETAREAVNIPVDLPTPLETT-NFSSYTPRKRQ 313
Query: 56 QTSS----PPSKIPLRPRKIR 72
QT++ PP + P P+++R
Sbjct: 314 QTTNGNEVPPKRTP-GPQRMR 333
>gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated.
Length = 420
Score = 30.9 bits (71), Expect = 1.2
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 12/40 (30%)
Query: 321 RFVEAKGAPSSAAAVAAGAALPQPQQEEQQQPQLLDQINS 360
VE GA S AA+ AG +P L++I+
Sbjct: 210 IGVEPAGAASMKAALEAG------------KPVTLEKIDK 237
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional.
Length = 991
Score = 30.8 bits (69), Expect = 1.3
Identities = 15/57 (26%), Positives = 22/57 (38%)
Query: 13 PEPQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSPPSKIPLRPR 69
P P P+ + P + + T + IP Q T+ P T PP + P R
Sbjct: 649 PTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMR 705
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 30.6 bits (70), Expect = 1.6
Identities = 23/116 (19%), Positives = 36/116 (31%), Gaps = 5/116 (4%)
Query: 12 QPEPQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSPPSKIPLRP--R 69
PEP+ P++ P TA V A A+ Q + P
Sbjct: 365 LPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLA 424
Query: 70 KIRKLSPDNGVDQASSSQPTESSKATSAKSTKSRAIQQQQQTLTVPRIIARPLSSE 125
++L G +A S+P +S+A S R + + P E
Sbjct: 425 ARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALE---KAPAKKE 477
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 30.4 bits (68), Expect = 1.6
Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 19/164 (11%)
Query: 3 EQTQSQTQNQPEPQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSPPS 62
E+ + ++ EP P+P + P A A P +T A A V+ S P
Sbjct: 213 EEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAA----APVS-SGDSGPY 267
Query: 63 KIPLRPRKIRKLSPDNGVDQASSSQP-------TESSKATSAKSTKSRAIQQQQQTLTVP 115
PL +RKL+ D GVD ++ + A + + ++RA P
Sbjct: 268 VTPL----VRKLAKDKGVDLSTVKGTGVGGRIRKQDVLAAAKAAEEARAAAAAPAAAAAP 323
Query: 116 RIIARPLSSEGEVEAAIRHLRNADRQLASLIDIHPPPTFDSFHT 159
A P ++ E LR +++ + I T +S T
Sbjct: 324 ---AAPAAAAKPAEPDTAKLRGTTQKMNRIRQITADKTIESLQT 364
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 30.3 bits (69), Expect = 2.0
Identities = 14/126 (11%), Positives = 23/126 (18%), Gaps = 4/126 (3%)
Query: 10 QNQPEPQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSPPSKIPLRPR 69
+P P P A A H P
Sbjct: 612 AARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPA 671
Query: 70 KIRKLSPDNGV----DQASSSQPTESSKATSAKSTKSRAIQQQQQTLTVPRIIARPLSSE 125
K +P A ++ + + + Q P A+ S+
Sbjct: 672 KAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAP 731
Query: 126 GEVEAA 131
Sbjct: 732 SPAADD 737
>gnl|CDD|151472 pfam11025, GP40, Glycoprotein GP40 of Cryptosporidium. This family
is highly conserved in Cryptosporidium spp. Many members
are annotated as being a 60 kDa glycoprotein.
Length = 165
Score = 29.4 bits (66), Expect = 2.1
Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 13/118 (11%)
Query: 37 PVQTETANNATITHANVTPQTSSPPSKIPLRPRKIRKLSPDNGVD-----------QASS 85
PV T TI +A + QT P I + DN V SS
Sbjct: 21 PVATLKCGGYTIVYAPIKDQTDPAPRYISGEVTSVTFEKSDNTVKIKVNGKEFSTLSTSS 80
Query: 86 SQPTESSKATSAKSTKSRA--IQQQQQTLTVPRIIARPLSSEGEVEAAIRHLRNADRQ 141
S PTE++ + ++SR ++ +T + A L +E A+ +A ++
Sbjct: 81 SSPTENNGSAGQAQSRSRRSLSEETGETAATVDLFAFTLDGGKRIEVAVPSDEDASKR 138
>gnl|CDD|237868 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 702
Score = 30.0 bits (67), Expect = 2.3
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 14/96 (14%)
Query: 12 QPEPQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSPPSK--IPLRPR 69
+PEP+PEPE +P PNQD + V + + V +T S + IP+ +
Sbjct: 431 EPEPEPEPEPEPQPNQD-------LMVFDPNHHELIGLESAVVQETVSVLEEDFIPVPEQ 483
Query: 70 KIRKLSPDNGVDQ-----ASSSQPTESSKATSAKST 100
K+ ++ + V Q AS+++P +A+SA+ +
Sbjct: 484 KLVQVQAETQVKQIEPEPASTAEPIGLFEASSAEFS 519
>gnl|CDD|234203 TIGR03420, DnaA_homol_Hda, DnaA regulatory inactivator Hda.
Members of this protein family are Hda (Homologous to
DnaA). These proteins are about half the length of DnaA
and homologous over length of Hda. In the model species
Escherichia coli, the initiation of DNA replication
requires DnaA bound to ATP rather than ADP; Hda helps
facilitate the conversion of DnaA-ATP to DnaA-ADP [DNA
metabolism, DNA replication, recombination, and repair].
Length = 226
Score = 29.5 bits (67), Expect = 2.3
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 141 QLASLIDIHPPPTFDSFHTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGV 195
QL + + PTFD+F+ A + L Q A K +Y L GE+G
Sbjct: 1 QLPLDVGLPDDPTFDNFYAGGNAELLAALRQLAAGKGDRFLY-----LW-GESGS 49
>gnl|CDD|221188 pfam11725, AvrE, Pathogenicity factor. This family is secreted by
gram-negative Gammaproteobacteria such as Pseudomonas
syringae of tomato and the fire blight plant pathogen
Erwinia amylovora, amongst others. It is an essential
pathogenicity factor of approximately 198 kDa. Its
injection into the host-plant is dependent upon the
bacterial type III or Hrp secretion system. The family
is long and carries a number of predicted functional
regions, including an ERMS or endoplasmic reticulum
membrane retention signal at both the C- and the
N-termini, a leucine-zipper motif from residues 539-560,
and a nuclear localisation signal at 1358-1361. this
conserved AvrE-family of effectors is among the few that
are required for full virulence of many phytopathogenic
pseudomonads, erwinias and pantoeas.
Length = 1771
Score = 30.1 bits (68), Expect = 2.4
Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 3/111 (2%)
Query: 54 TPQTSSPPSKIPLRPRKIRKLSPDNGVDQASSSQPTESSKATSAKSTKSRAIQQQQQTLT 113
+ SK+P L D+ + Q S +A+ ++ ++SR
Sbjct: 159 VSKEEGTSSKMPATALASAALFKDDEIRQ--EVDAARSDQASQSRLSRSRGNPPAIPPDA 216
Query: 114 VPRIIARPLSSEGEVEA-AIRHLRNADRQLASLIDIHPPPTFDSFHTPFLA 163
PR S+ G E RN Q +D F F+ P L
Sbjct: 217 APRQPMLTRSAGGRFEGEDENLERNLQPQSPITLDKKGKLDFSGFNPPALN 267
>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane
glycoprotein G.
Length = 408
Score = 29.6 bits (66), Expect = 2.5
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Query: 17 PEPETQPPPNQDSTTALAVIPVQTETAN-NATITHANVTPQTSSPPSKIPLRPRKIRK-L 74
PEP+T+PPP+Q + P T + + + T T + +PP+ R
Sbjct: 230 PEPQTEPPPSQRGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPA--TSNRRSPHSTA 287
Query: 75 SPDNGVDQASSSQPTESSKAT-----SAKSTKSRAIQQQQQT 111
+P + + +PT AT S + +Q T
Sbjct: 288 TPPPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPTT 329
Score = 28.9 bits (64), Expect = 4.8
Identities = 25/107 (23%), Positives = 35/107 (32%), Gaps = 18/107 (16%)
Query: 4 QTQSQTQNQPEP----QPEPETQPPPNQDSTTALAVIPVQTE-TANNATITHANVTPQTS 58
+T S P Q P++QP T TE T T +N PQT
Sbjct: 176 KTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTE 235
Query: 59 SPPSKIPLRPRKIRKLSPDNGVDQASSS--QPTESSKATSAKSTKSR 103
PPS+ +G Q S +S+ + T+ R
Sbjct: 236 PPPSQ-----------RGPSGSPQHPPSTTSQDQSTTGDGQEHTQRR 271
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 29.8 bits (67), Expect = 2.7
Identities = 17/118 (14%), Positives = 29/118 (24%), Gaps = 3/118 (2%)
Query: 14 EPQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSPPSKIPLRPRKIRK 73
P+ + A P T + P ++ + R +
Sbjct: 409 ALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRC---DE 465
Query: 74 LSPDNGVDQASSSQPTESSKATSAKSTKSRAIQQQQQTLTVPRIIARPLSSEGEVEAA 131
D S+S P + +A RA T P ++ E A
Sbjct: 466 RDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPA 523
Score = 28.7 bits (64), Expect = 6.1
Identities = 25/154 (16%), Positives = 44/154 (28%), Gaps = 14/154 (9%)
Query: 5 TQSQTQNQPEPQPEPETQPPPNQ--DSTTALAVIPVQTET-ANNATITHANVTPQTSSPP 61
++ P P P D A AN + + + PP
Sbjct: 412 PKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPP 471
Query: 62 SKI--------PLRPRKIRKLSPDNGVDQASSSQPTESSKATSAKSTKSRAIQQQQQTLT 113
+ P + +P A++ ++A +A S +
Sbjct: 472 ADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPE 531
Query: 114 VPR---IIARPLSSEGEVEAAIRHLRNADRQLAS 144
A P + G AA+ LRNA +++S
Sbjct: 532 ARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSS 565
>gnl|CDD|180536 PRK06347, PRK06347, autolysin; Reviewed.
Length = 592
Score = 29.7 bits (66), Expect = 3.1
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
Query: 2 VEQTQSQTQNQPEPQPEPET--QPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSS 59
E T Q + + Q + QP Q P + T +N ++ TP T +
Sbjct: 83 TEPTVEPKQTETKEQTKTPEEKQPAAKQVEKA-----PAEPATVSNPDNATSSSTPATYN 137
Query: 60 PPSKIPLR 67
K LR
Sbjct: 138 LLQKSALR 145
Score = 28.9 bits (64), Expect = 4.8
Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 7/81 (8%)
Query: 8 QTQNQPEPQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSPPSKIPLR 67
+ E E ++TT V P QTET TP+ P +K +
Sbjct: 60 EASKSAEANTTKEAPATATPENTTEPTVEPKQTETKEQTK------TPEEKQPAAKQVEK 113
Query: 68 PRKIRKLSPDNGVDQASSSQP 88
+ N + SSS P
Sbjct: 114 A-PAEPATVSNPDNATSSSTP 133
>gnl|CDD|183147 PRK11465, PRK11465, putative mechanosensitive channel protein;
Provisional.
Length = 741
Score = 29.7 bits (67), Expect = 3.1
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 5 TQSQTQNQPEPQPEPETQPPPNQDSTTALAVIPVQTETANNATITH---ANVTPQTSSPP 61
T + T + EP PEP + + ALA + + +T+ I A TP P
Sbjct: 26 TTTSTDSTTEPAPEP--DIEQKKAAYAALADV-LDNDTSRKELIDQLRTAAATPPAEPVP 82
Query: 62 SKIP 65
+P
Sbjct: 83 KIVP 86
>gnl|CDD|227502 COG5175, MOT2, Transcriptional repressor [Transcription].
Length = 480
Score = 29.3 bits (65), Expect = 3.5
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 9/136 (6%)
Query: 17 PEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSPPSKIPL--------RP 68
P P + T+ + P + + TP T S S I L
Sbjct: 277 PSPAAMEAQFKHKTSRVFKAPDKILFPPLDFTNTQSATPVTLSNSSSINLPTLNDSLGHH 336
Query: 69 RKIRKLSPDNGVDQASSSQPTESSKATSAKSTKSRAIQQQQQTLTVPRIIARPLSSEGEV 128
+ + N + S+ +S A K A+ + ++ RP+S + +
Sbjct: 337 TETTTTTNTNATSHSHGSKKKQSLAAEEYKDPYD-ALGNAARLHSLSNYQKRPISIKSDE 395
Query: 129 EAAIRHLRNADRQLAS 144
E + + +D LA+
Sbjct: 396 ETYKKWDKKSDNTLAN 411
>gnl|CDD|226156 COG3629, DnrI, DNA-binding transcriptional activator of the SARP
family [Signal transduction mechanisms].
Length = 280
Score = 29.3 bits (66), Expect = 3.5
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 126 GEVEAAIRHLRNADRQLASLIDIHPPPTFDSF 157
G AAIR R + LA + I P P +
Sbjct: 201 GRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232
>gnl|CDD|177148 MTH00079, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 508
Score = 29.3 bits (66), Expect = 3.8
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 231 GILSDSAIVNMDDKSLFTMLTMVNGIGS--------WSVHMFMI 266
GI+S S + K +F L MV I S W+ HM+ +
Sbjct: 252 GIISQSTLYLTGKKEVFGSLGMVYAILSIGLIGCVVWAHHMYTV 295
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 29.3 bits (65), Expect = 3.8
Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Query: 3 EQTQSQTQNQPEPQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQT 57
+ TQ T P QP + Q V P Q T N A PQT
Sbjct: 202 KPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNP----AQQPPQT 252
>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional.
Length = 226
Score = 28.7 bits (64), Expect = 3.8
Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 4/113 (3%)
Query: 3 EQTQSQTQNQPEPQPEPETQPPPNQDSTTALAVIP----VQTETANNATITHANVTPQTS 58
+Q+ + +P E E ++ + TA + T Q +
Sbjct: 90 AGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAARDGPTPDPTAQPA 149
Query: 59 SPPSKIPLRPRKIRKLSPDNGVDQASSSQPTESSKATSAKSTKSRAIQQQQQT 111
+P + R R P + T + S T +R ++ T
Sbjct: 150 TPDERRSPRQRPPVSGEPPTPSTPDAHVAGTLQAARESLVETLARFARRAAAT 202
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 29.3 bits (65), Expect = 3.9
Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 9/81 (11%)
Query: 81 DQASSSQPTESSKATSAKSTKSRAIQQQQQTLTVPR--------IIARPLSSEGEVEAAI 132
D SS T S +T+ + S + R I+ P+ S G A
Sbjct: 272 DSTSSPSTTRPSGSTTTTTPASSGPSAPGGPGSSSRNAVTRSTDSISGPIPSPGAPRAIT 331
Query: 133 RHLRNADRQLASLI-DIHPPP 152
+ + + D P P
Sbjct: 332 GQMGEREMFAVQFLGDFKPKP 352
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 29.2 bits (65), Expect = 4.1
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 5 TQSQTQNQPEPQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSPPSKI 64
+QS+ + + Q PETQ P T L P+ T +A ++ + +S +
Sbjct: 34 SQSEQNIENDGQNSPETQSPL-----TELQPSPLPPNTTLDAPVSDSQGDESSSEQQPQN 88
Query: 65 P------LRPRKIRK 73
P P+K R+
Sbjct: 89 PNSTEPAPPPKKRRR 103
>gnl|CDD|235710 PRK06133, PRK06133, glutamate carboxypeptidase; Reviewed.
Length = 410
Score = 29.2 bits (66), Expect = 4.3
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 330 SSAAAVAAGAALPQPQ---QEEQQQPQLLDQINSLINI 364
++AAA A AA P + +Q+QP LD + L++I
Sbjct: 12 AAAAAAGAAAAAPDAELLAAAQQEQPAYLDTLKELVSI 49
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 28.8 bits (65), Expect = 4.3
Identities = 14/58 (24%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 5 TQSQTQNQPEPQPEPETQPPPNQDSTTALAVIPVQTETANNATITH-ANVTPQTSSPP 61
T + P P +T P +Q A A P N ANV + P
Sbjct: 168 TTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAP 225
Score = 28.8 bits (65), Expect = 4.4
Identities = 13/54 (24%), Positives = 14/54 (25%)
Query: 9 TQNQPEPQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSPPS 62
T P T P P D V P Q AT A + P
Sbjct: 184 TTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPL 237
>gnl|CDD|227600 COG5275, COG5275, BRCT domain type II [General function prediction
only].
Length = 276
Score = 28.6 bits (63), Expect = 5.1
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 8/100 (8%)
Query: 19 PETQPPPNQDSTTALAVIPVQTETANNATITHANVTP-QTSSPPSKIPLRPRKIRKLSPD 77
P+ + + I ET + + H T T+S + + R RK +
Sbjct: 17 PDEYFEQQSTRSRSKPRIISNKETTTSKDVVHPVKTELDTTSDSKPVVHQTRATRKPA-- 74
Query: 78 NGVDQASSSQPTESSKATSAKSTKSRAIQQQQQTLTVPRI 117
Q + + T +SK+ S +T + + ++ +PR
Sbjct: 75 ----QPKAEKST-TSKSKSHTTTATTHTSRSSKSKGLPRF 109
>gnl|CDD|147601 pfam05505, Ebola_NP, Ebola nucleoprotein. This family consists of
Ebola and Marburg virus nucleoproteins. These proteins
are responsible for encapsidation of genomic RNA. It has
been found that nucleoprotein DNA vaccines can offer
protection from the virus.
Length = 717
Score = 28.8 bits (64), Expect = 5.5
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 3/91 (3%)
Query: 1 MVEQTQSQTQNQPEPQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSP 60
+ + + T Q + + +PPP A + NN + P +
Sbjct: 479 PIPEQAASTYGQTSRERQGIPEPPPGSHQPGNRASQDL---NNNNQKQEDESTNPIGKTS 535
Query: 61 PSKIPLRPRKIRKLSPDNGVDQASSSQPTES 91
L P + D D SS P ES
Sbjct: 536 LRYQELTPVQEEDEPEDQTDDDDSSLPPLES 566
>gnl|CDD|216289 pfam01080, Presenilin, Presenilin. Mutations in presenilin-1 are a
major cause of early onset Alzheimer's disease. It has
been found that presenilin-1 binds to beta-catenin
in-vivo. This family also contains SPE proteins from
C.elegans.
Length = 403
Score = 28.6 bits (64), Expect = 6.1
Identities = 19/105 (18%), Positives = 29/105 (27%), Gaps = 6/105 (5%)
Query: 31 TALAVIPVQTETANNATITHANVTPQTSSPPSKIPL--RPRKIRKLSPDNGVDQASSSQP 88
T + E + + T ++P S K S D S S
Sbjct: 227 TVGSNQEETNEGTPSTIRRTSKSTRSAANPDSAPTSHSTLELPEKSSTPELSDDESDSSE 286
Query: 89 TESSKATSAKSTKSRAIQQQQQTLTVPRIIARPLSSEGEVEAAIR 133
TES S S +Q + + E E E ++
Sbjct: 287 TES---QSDSSLAPEEDAAEQPEV-QSNSLPSNEKREEEEERGVK 327
>gnl|CDD|139494 PRK13335, PRK13335, superantigen-like protein; Reviewed.
Length = 356
Score = 28.2 bits (62), Expect = 6.9
Identities = 14/98 (14%), Positives = 35/98 (35%), Gaps = 1/98 (1%)
Query: 6 QSQTQNQPEPQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSPPS-KI 64
+ + + E +QP + + ++ P + + T + ++PPS
Sbjct: 81 NTNEEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQTTTESTTPKTKVTTPPSTNT 140
Query: 65 PLRPRKIRKLSPDNGVDQASSSQPTESSKATSAKSTKS 102
P + + +P + + + + T + A TK
Sbjct: 141 PQPMQSTKSDTPQSPTIKQAQTDMTPKYEDLRAYYTKP 178
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 28.1 bits (63), Expect = 6.9
Identities = 23/157 (14%), Positives = 47/157 (29%), Gaps = 21/157 (13%)
Query: 12 QPEPQPEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSPPSKIPLRPRKI 71
+P + PP + + P + +++++ A + Q+ +PP
Sbjct: 176 DADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNP- 234
Query: 72 RKLSPDNGVDQASSSQPTESSKATSAKSTKSRAIQQQQQTLTVPRIIARPLSSEGEVEAA 131
SP G + ++AK T A I + + A
Sbjct: 235 ---SPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAP-------IGGITLDDDAIAKA 284
Query: 132 IRHLRNADRQLASLIDIHPPPTFDSFHTPFLALTRSI 168
+H + A L F+ T L +++
Sbjct: 285 QKHAKWAISAL----------NFEDVPTAVKELRKAL 311
>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 814
Score = 28.7 bits (64), Expect = 7.2
Identities = 15/100 (15%), Positives = 23/100 (23%), Gaps = 3/100 (3%)
Query: 9 TQNQPEPQPEPETQPPPN---QDSTTALAVIPVQTETANNATITHANVTPQTSSPPSKIP 65
N Q E P + T E N T A + S
Sbjct: 20 ASNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAE 79
Query: 66 LRPRKIRKLSPDNGVDQASSSQPTESSKATSAKSTKSRAI 105
+ + TE+SK ++ R +
Sbjct: 80 TSDPTSEATDTTTSEARTVTPAATETSKPVEGQTVDVRIL 119
>gnl|CDD|223255 COG0177, Nth, Predicted EndoIII-related endonuclease [DNA
replication, recombination, and repair].
Length = 211
Score = 27.9 bits (63), Expect = 7.5
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 18/92 (19%)
Query: 145 LIDIHPPPTFD-SFHTPFLALTRSILYQQ----LAFKAGTSIYTRFIALCGGEAGVVPET 199
L +++P P + F PF L IL Q + KA +++ R+ PE
Sbjct: 13 LRELYPEPKTELDFKDPFELLVAVILSAQTTDEVVNKATPALFKRYPT---------PED 63
Query: 200 VLALTPQQL----RQIGVSGRKASYLHDLARK 227
+L ++L + IG+ KA + +LAR
Sbjct: 64 LLNADEEELEELIKSIGLYRNKAKNIKELARI 95
>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase;
Provisional.
Length = 481
Score = 28.2 bits (62), Expect = 7.7
Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 9/91 (9%)
Query: 3 EQTQSQTQNQPEPQ-PEPETQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSPP 61
E+ ++ TQ Q P+ P +P P + T T T N T TS+P
Sbjct: 283 EKKETTTQQQTAPKAPTEAAKPAPAPSTNTNANKTNTNTNTNTNNT--------NTSTPS 334
Query: 62 SKIPLRPRKIRKLSPDNGVDQASSSQPTESS 92
+ + +Q SS+ + SS
Sbjct: 335 KNTNTNTNSNTNTNSNTNANQGSSNNNSNSS 365
>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed.
Length = 421
Score = 28.1 bits (62), Expect = 8.2
Identities = 13/83 (15%), Positives = 30/83 (36%)
Query: 21 TQPPPNQDSTTALAVIPVQTETANNATITHANVTPQTSSPPSKIPLRPRKIRKLSPDNGV 80
+ P+ + + AVIP T + T + V ++ P + + +
Sbjct: 314 SAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPGTVALPAAEPVN 373
Query: 81 DQASSSQPTESSKATSAKSTKSR 103
Q TE+ ++++ T +
Sbjct: 374 MQPQPMSTTETQQSSTGNITSTA 396
>gnl|CDD|234273 TIGR03593, yidC_nterm, membrane protein insertase, YidC/Oxa1
family, N-terminal domain. Essentially all bacteria
have a member of the YidC family, whose C-terminal
domain is modeled by TIGR03592. The two copies are
found in endospore-forming bacteria such as Bacillus
subtilis appear redundant during vegetative growth,
although the member designated spoIIIJ (stage III
sporulation protein J) has a distinct role in spore
formation. YidC, its mitochondrial homolog Oxa1, and
its chloroplast homolog direct insertion into the
bacterial/organellar inner (or only) membrane. This
model describes an N-terminal sequence region,
including a large periplasmic domain lacking in YidC
members from Gram-positive species. The multifunctional
YidC protein acts both with and independently of the
Sec system [Protein fate, Protein and peptide secretion
and trafficking].
Length = 366
Score = 28.1 bits (63), Expect = 8.2
Identities = 9/46 (19%), Positives = 11/46 (23%)
Query: 4 QTQSQTQNQPEPQPEPETQPPPNQDSTTALAVIPVQTETANNATIT 49
Q PP D+ A A TA T+
Sbjct: 34 AAAQTASAQSATAAATPAAAPPAADAPAAAAAADAAAATAKRITVK 79
>gnl|CDD|236726 PRK10618, PRK10618, phosphotransfer intermediate protein in
two-component regulatory system with RcsBC; Provisional.
Length = 894
Score = 28.4 bits (64), Expect = 9.0
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 341 LPQPQQEEQQQPQLLDQINSLINI 364
L + E+++ +LLD + L++I
Sbjct: 673 LAADPEVEEEEEKLLDGVTVLLDI 696
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.129 0.370
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,740,118
Number of extensions: 1777396
Number of successful extensions: 3425
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3209
Number of HSP's successfully gapped: 170
Length of query: 373
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 275
Effective length of database: 6,590,910
Effective search space: 1812500250
Effective search space used: 1812500250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)