Query 039605
Match_columns 352
No_of_seqs 448 out of 3217
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 11:19:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02661 Putative thiazole syn 100.0 3.7E-49 8E-54 368.5 23.7 315 21-352 23-357 (357)
2 COG1635 THI4 Ribulose 1,5-bisp 100.0 3.5E-42 7.6E-47 294.9 20.4 241 78-323 2-261 (262)
3 KOG2960 Protein involved in th 100.0 1.4E-41 3.1E-46 289.3 15.3 273 60-332 30-328 (328)
4 TIGR00292 thiazole biosynthesi 100.0 5.7E-37 1.2E-41 279.3 22.2 232 86-322 1-254 (254)
5 PRK04176 ribulose-1,5-biphosph 100.0 1.6E-36 3.5E-41 277.1 22.1 235 83-323 2-256 (257)
6 PF01946 Thi4: Thi4 family; PD 100.0 1.7E-34 3.8E-39 249.3 15.2 209 90-303 1-230 (230)
7 COG0492 TrxB Thioredoxin reduc 99.6 3.7E-15 8E-20 139.0 13.8 123 182-325 182-304 (305)
8 COG2081 Predicted flavoprotein 99.6 1.9E-14 4.1E-19 135.1 13.9 129 105-250 2-167 (408)
9 PF03486 HI0933_like: HI0933-l 99.6 7.9E-15 1.7E-19 142.3 11.7 128 107-250 1-166 (409)
10 COG1249 Lpd Pyruvate/2-oxoglut 99.6 1.1E-13 2.3E-18 135.5 18.9 119 179-319 215-334 (454)
11 PRK06452 sdhA succinate dehydr 99.6 4E-14 8.7E-19 143.5 15.8 135 105-250 4-198 (566)
12 PRK10262 thioredoxin reductase 99.6 1.2E-13 2.7E-18 130.5 16.3 120 190-327 196-320 (321)
13 PRK05249 soluble pyridine nucl 99.6 2.2E-13 4.8E-18 135.2 18.7 113 182-318 220-333 (461)
14 PRK15317 alkyl hydroperoxide r 99.5 1E-13 2.3E-18 139.3 16.3 123 184-325 392-515 (517)
15 PTZ00139 Succinate dehydrogena 99.5 7.3E-14 1.6E-18 142.8 15.2 135 105-250 28-229 (617)
16 PRK06116 glutathione reductase 99.5 2.6E-13 5.6E-18 134.3 18.1 115 182-319 212-327 (450)
17 PRK06069 sdhA succinate dehydr 99.5 5.7E-14 1.2E-18 142.9 13.7 137 104-250 3-200 (577)
18 PLN02546 glutathione reductase 99.5 8.4E-13 1.8E-17 133.2 21.8 114 183-319 298-412 (558)
19 PRK06175 L-aspartate oxidase; 99.5 1.1E-13 2.4E-18 136.1 15.0 133 105-250 3-189 (433)
20 PRK08958 sdhA succinate dehydr 99.5 1.2E-13 2.6E-18 140.6 15.6 135 105-250 6-206 (588)
21 PRK07573 sdhA succinate dehydr 99.5 1.2E-13 2.6E-18 141.7 15.7 136 104-250 33-232 (640)
22 PRK09231 fumarate reductase fl 99.5 1.2E-13 2.7E-18 140.4 15.7 137 105-250 3-196 (582)
23 PLN00128 Succinate dehydrogena 99.5 1.3E-13 2.7E-18 141.3 15.3 135 105-250 49-250 (635)
24 TIGR01424 gluta_reduc_2 glutat 99.5 3.9E-13 8.5E-18 132.8 18.0 113 183-319 212-325 (446)
25 COG0029 NadB Aspartate oxidase 99.5 2.5E-13 5.4E-18 130.4 15.8 131 108-250 9-196 (518)
26 PF00890 FAD_binding_2: FAD bi 99.5 1.1E-13 2.3E-18 135.6 13.7 133 108-251 1-204 (417)
27 PRK05945 sdhA succinate dehydr 99.5 1.6E-13 3.4E-18 139.6 14.9 136 105-250 2-197 (575)
28 PRK09078 sdhA succinate dehydr 99.5 1.7E-13 3.6E-18 139.8 15.1 135 105-250 11-212 (598)
29 PRK07803 sdhA succinate dehydr 99.5 2E-13 4.3E-18 140.0 15.3 136 105-250 7-213 (626)
30 TIGR01176 fum_red_Fp fumarate 99.5 2.5E-13 5.5E-18 137.9 15.8 137 105-250 2-195 (580)
31 PLN02815 L-aspartate oxidase 99.5 1.4E-13 3E-18 139.9 13.7 136 104-250 27-222 (594)
32 PRK08274 tricarballylate dehyd 99.5 3.7E-13 8.1E-18 133.7 15.8 133 106-250 4-192 (466)
33 PRK06481 fumarate reductase fl 99.5 2.7E-13 5.7E-18 136.0 14.7 134 105-250 60-251 (506)
34 PRK09077 L-aspartate oxidase; 99.5 2.7E-13 5.9E-18 136.8 14.6 138 102-250 4-207 (536)
35 PRK06370 mercuric reductase; V 99.5 1.1E-12 2.5E-17 130.1 18.5 117 182-319 216-333 (463)
36 PLN02507 glutathione reductase 99.5 1.2E-12 2.6E-17 130.9 18.5 114 182-319 248-362 (499)
37 PRK12834 putative FAD-binding 99.5 4.6E-13 9.9E-18 135.6 15.5 141 105-250 3-227 (549)
38 PRK08626 fumarate reductase fl 99.5 3.3E-13 7.2E-18 138.8 14.5 136 104-250 3-220 (657)
39 PRK07121 hypothetical protein; 99.5 5.8E-13 1.3E-17 133.2 15.7 133 105-250 19-239 (492)
40 PRK07804 L-aspartate oxidase; 99.5 6.1E-13 1.3E-17 134.3 15.8 138 105-250 15-210 (541)
41 TIGR00551 nadB L-aspartate oxi 99.5 4.1E-13 8.8E-18 134.1 14.3 132 106-250 2-189 (488)
42 COG3634 AhpF Alkyl hydroperoxi 99.5 2.1E-13 4.6E-18 125.0 10.8 123 182-323 393-516 (520)
43 PRK07057 sdhA succinate dehydr 99.5 5.8E-13 1.3E-17 135.7 15.0 136 104-250 10-211 (591)
44 PRK07395 L-aspartate oxidase; 99.5 4.1E-13 8.9E-18 135.7 13.7 132 105-249 8-196 (553)
45 TIGR01812 sdhA_frdA_Gneg succi 99.5 5.8E-13 1.3E-17 135.4 14.4 132 108-250 1-191 (566)
46 PRK06263 sdhA succinate dehydr 99.5 6.7E-13 1.5E-17 134.2 14.7 134 105-250 6-197 (543)
47 PRK06185 hypothetical protein; 99.5 2.3E-12 5E-17 125.7 18.0 136 103-250 3-169 (407)
48 PRK12769 putative oxidoreducta 99.5 1.4E-12 3.1E-17 134.6 17.4 123 191-323 518-653 (654)
49 TIGR01292 TRX_reduct thioredox 99.5 9.7E-13 2.1E-17 122.5 14.7 117 185-321 183-300 (300)
50 PRK08010 pyridine nucleotide-d 99.5 2.7E-12 5.8E-17 126.7 18.5 113 182-319 203-316 (441)
51 PRK06854 adenylylsulfate reduc 99.5 6.3E-13 1.4E-17 135.8 14.3 137 105-250 10-195 (608)
52 PRK08641 sdhA succinate dehydr 99.5 1.3E-12 2.8E-17 133.2 15.8 135 106-250 3-200 (589)
53 KOG0405 Pyridine nucleotide-di 99.5 1.2E-12 2.5E-17 120.2 13.8 129 105-250 19-165 (478)
54 COG0654 UbiH 2-polyprenyl-6-me 99.4 2.3E-12 5E-17 125.1 16.4 129 106-250 2-162 (387)
55 PRK12810 gltD glutamate syntha 99.4 3.8E-12 8.1E-17 126.7 17.8 122 191-325 341-468 (471)
56 PTZ00306 NADH-dependent fumara 99.4 9.5E-13 2.1E-17 143.3 14.5 141 103-251 406-621 (1167)
57 PRK07512 L-aspartate oxidase; 99.4 9.1E-13 2E-17 132.2 13.3 134 103-250 6-197 (513)
58 PRK08275 putative oxidoreducta 99.4 1.5E-12 3.3E-17 131.9 14.9 136 105-250 8-200 (554)
59 PF01494 FAD_binding_3: FAD bi 99.4 2.4E-12 5.3E-17 122.1 15.0 133 106-250 1-172 (356)
60 COG0644 FixC Dehydrogenases (f 99.4 2.1E-12 4.5E-17 125.7 14.7 127 105-250 2-152 (396)
61 PRK06467 dihydrolipoamide dehy 99.4 1.6E-11 3.5E-16 122.1 21.3 117 182-319 219-336 (471)
62 PRK08205 sdhA succinate dehydr 99.4 2E-12 4.4E-17 131.7 14.2 134 105-250 4-206 (583)
63 PRK07494 2-octaprenyl-6-methox 99.4 6.1E-12 1.3E-16 121.9 16.5 131 104-251 5-168 (388)
64 PRK08071 L-aspartate oxidase; 99.4 2.4E-12 5.2E-17 129.1 13.8 131 106-250 3-190 (510)
65 TIGR02032 GG-red-SF geranylger 99.4 5.2E-12 1.1E-16 117.1 15.0 129 107-251 1-149 (295)
66 PRK12837 3-ketosteroid-delta-1 99.4 3.6E-12 7.8E-17 128.0 14.9 133 105-250 6-235 (513)
67 PRK08773 2-octaprenyl-3-methyl 99.4 8.5E-12 1.9E-16 121.2 17.1 131 104-251 4-170 (392)
68 PRK10015 oxidoreductase; Provi 99.4 4.7E-12 1E-16 124.4 15.3 129 105-250 4-164 (429)
69 PRK12775 putative trifunctiona 99.4 4.6E-12 9.9E-17 135.7 16.3 126 191-325 621-758 (1006)
70 PRK10157 putative oxidoreducta 99.4 3.5E-12 7.5E-17 125.4 13.9 129 105-250 4-164 (428)
71 PRK09126 hypothetical protein; 99.4 6.9E-12 1.5E-16 121.7 15.7 130 106-251 3-168 (392)
72 PRK12778 putative bifunctional 99.4 5.7E-12 1.2E-16 132.2 16.1 124 191-323 620-751 (752)
73 PRK12779 putative bifunctional 99.4 1.1E-11 2.4E-16 131.8 18.2 125 191-324 496-629 (944)
74 PRK07364 2-octaprenyl-6-methox 99.4 1E-11 2.2E-16 121.4 16.6 133 106-251 18-182 (415)
75 KOG1335 Dihydrolipoamide dehyd 99.4 4.2E-12 9.1E-17 118.0 12.9 101 182-292 255-356 (506)
76 PRK13800 putative oxidoreducta 99.4 4.3E-12 9.3E-17 135.2 14.4 136 105-250 12-205 (897)
77 PRK08849 2-octaprenyl-3-methyl 99.4 1.3E-11 2.9E-16 119.6 16.6 130 106-251 3-168 (384)
78 TIGR03143 AhpF_homolog putativ 99.4 7E-12 1.5E-16 127.1 15.2 128 185-332 185-319 (555)
79 PRK08013 oxidoreductase; Provi 99.4 1.4E-11 3E-16 120.1 16.8 130 106-251 3-169 (400)
80 TIGR01811 sdhA_Bsu succinate d 99.4 4.9E-12 1.1E-16 129.1 13.5 132 109-250 1-196 (603)
81 PRK12845 3-ketosteroid-delta-1 99.4 5.5E-12 1.2E-16 127.7 13.8 39 105-145 15-53 (564)
82 PRK05192 tRNA uridine 5-carbox 99.4 7.1E-12 1.5E-16 125.9 13.7 130 105-250 3-157 (618)
83 PRK08401 L-aspartate oxidase; 99.4 8.7E-12 1.9E-16 123.9 14.2 126 107-250 2-175 (466)
84 TIGR02061 aprA adenosine phosp 99.4 8E-12 1.7E-16 127.2 14.1 132 108-250 1-191 (614)
85 PRK12844 3-ketosteroid-delta-1 99.4 9.3E-12 2E-16 126.1 14.6 59 181-251 211-270 (557)
86 PRK07608 ubiquinone biosynthes 99.4 2.1E-11 4.6E-16 118.0 16.5 129 106-251 5-168 (388)
87 PRK06126 hypothetical protein; 99.4 1.6E-11 3.6E-16 124.3 16.1 137 104-251 5-189 (545)
88 PRK13984 putative oxidoreducta 99.4 2E-11 4.4E-16 125.1 16.5 124 191-323 474-603 (604)
89 PRK08850 2-octaprenyl-6-methox 99.3 2.5E-11 5.4E-16 118.5 16.4 130 106-251 4-169 (405)
90 PLN02985 squalene monooxygenas 99.3 2.3E-11 4.9E-16 122.0 16.4 137 103-251 40-209 (514)
91 PRK12809 putative oxidoreducta 99.3 3.9E-11 8.4E-16 123.6 18.5 124 191-324 501-637 (639)
92 PRK08020 ubiF 2-octaprenyl-3-m 99.3 2.6E-11 5.7E-16 117.6 16.3 131 105-251 4-170 (391)
93 TIGR01813 flavo_cyto_c flavocy 99.3 1.1E-11 2.5E-16 122.1 13.7 131 108-251 1-193 (439)
94 PRK07045 putative monooxygenas 99.3 2.4E-11 5.2E-16 117.8 15.7 131 105-250 4-165 (388)
95 PF01266 DAO: FAD dependent ox 99.3 1.3E-11 2.7E-16 117.3 13.5 127 108-251 1-204 (358)
96 PRK12814 putative NADPH-depend 99.3 5.7E-11 1.2E-15 122.5 19.1 127 191-327 373-506 (652)
97 PRK06184 hypothetical protein; 99.3 2.9E-11 6.3E-16 121.3 16.5 132 106-251 3-169 (502)
98 PRK12842 putative succinate de 99.3 2.1E-11 4.5E-16 124.2 15.6 43 102-145 5-47 (574)
99 PRK06617 2-octaprenyl-6-methox 99.3 4.1E-11 9E-16 115.7 16.8 128 107-251 2-161 (374)
100 PRK07333 2-octaprenyl-6-methox 99.3 4.1E-11 9E-16 116.6 16.9 128 107-251 2-168 (403)
101 PRK08244 hypothetical protein; 99.3 4.5E-11 9.8E-16 119.7 17.3 132 106-251 2-160 (493)
102 TIGR03140 AhpF alkyl hydropero 99.3 1.9E-11 4E-16 123.0 14.5 161 107-323 353-514 (515)
103 PRK12835 3-ketosteroid-delta-1 99.3 1.5E-11 3.3E-16 125.2 14.0 40 105-145 10-49 (584)
104 PRK05714 2-octaprenyl-3-methyl 99.3 3.8E-11 8.2E-16 117.1 16.0 129 106-251 2-169 (405)
105 PRK06834 hypothetical protein; 99.3 3.9E-11 8.5E-16 119.8 16.3 129 106-251 3-157 (488)
106 PRK12771 putative glutamate sy 99.3 2.7E-11 5.9E-16 123.1 15.3 125 191-325 317-447 (564)
107 KOG0404 Thioredoxin reductase 99.3 1.1E-11 2.5E-16 107.4 10.4 123 182-323 196-320 (322)
108 PRK07190 hypothetical protein; 99.3 4.5E-11 9.8E-16 119.2 16.3 129 105-250 4-165 (487)
109 PRK11101 glpA sn-glycerol-3-ph 99.3 1.8E-11 3.9E-16 123.8 13.3 135 105-250 5-211 (546)
110 PF01134 GIDA: Glucose inhibit 99.3 4.3E-11 9.4E-16 114.4 15.1 125 108-248 1-150 (392)
111 COG0579 Predicted dehydrogenas 99.3 2.8E-11 6.1E-16 116.9 13.9 131 105-250 2-211 (429)
112 PF12831 FAD_oxidored: FAD dep 99.3 9E-13 1.9E-17 129.5 3.4 128 108-248 1-148 (428)
113 TIGR01984 UbiH 2-polyprenyl-6- 99.3 6.1E-11 1.3E-15 114.6 16.1 128 108-251 1-163 (382)
114 PRK12839 hypothetical protein; 99.3 3.3E-11 7.2E-16 122.3 14.4 41 104-145 6-46 (572)
115 PRK08132 FAD-dependent oxidore 99.3 1.2E-10 2.7E-15 118.0 18.2 134 105-251 22-186 (547)
116 TIGR01988 Ubi-OHases Ubiquinon 99.3 7.5E-11 1.6E-15 113.8 15.9 128 108-251 1-164 (385)
117 PRK06134 putative FAD-binding 99.3 4.8E-11 1E-15 121.6 15.0 40 105-145 11-50 (581)
118 PRK08163 salicylate hydroxylas 99.3 7.7E-11 1.7E-15 114.5 15.9 130 106-251 4-167 (396)
119 PRK07236 hypothetical protein; 99.3 1.2E-10 2.7E-15 112.8 17.2 129 104-251 4-155 (386)
120 TIGR01318 gltD_gamma_fam gluta 99.3 2.2E-10 4.7E-15 113.9 19.1 122 191-322 332-466 (467)
121 PRK05329 anaerobic glycerol-3- 99.3 2E-10 4.4E-15 112.0 18.4 126 182-321 263-420 (422)
122 PRK06183 mhpA 3-(3-hydroxyphen 99.3 6.6E-11 1.4E-15 119.7 15.4 135 105-251 9-175 (538)
123 TIGR01989 COQ6 Ubiquinone bios 99.3 1.1E-10 2.4E-15 115.1 16.5 130 107-251 1-184 (437)
124 PRK08243 4-hydroxybenzoate 3-m 99.3 8.6E-11 1.9E-15 114.2 15.5 132 106-251 2-164 (392)
125 KOG2415 Electron transfer flav 99.3 1.7E-10 3.8E-15 108.4 16.7 143 105-250 75-256 (621)
126 PRK12843 putative FAD-binding 99.3 7.3E-11 1.6E-15 120.2 15.2 60 180-251 223-283 (578)
127 TIGR01316 gltA glutamate synth 99.3 7.7E-11 1.7E-15 116.6 15.0 169 107-321 273-449 (449)
128 PRK04965 NADH:flavorubredoxin 99.3 5.9E-11 1.3E-15 114.8 13.7 160 107-319 142-301 (377)
129 PRK09754 phenylpropionate diox 99.3 5.1E-11 1.1E-15 116.0 13.3 162 107-319 145-308 (396)
130 PTZ00367 squalene epoxidase; P 99.3 1.2E-10 2.6E-15 117.7 16.3 159 91-251 18-220 (567)
131 COG1053 SdhA Succinate dehydro 99.3 2.1E-11 4.5E-16 122.6 10.7 136 105-250 5-202 (562)
132 TIGR01421 gluta_reduc_1 glutat 99.3 2.1E-10 4.5E-15 113.6 17.6 159 107-318 167-326 (450)
133 TIGR01350 lipoamide_DH dihydro 99.3 2.9E-10 6.3E-15 112.8 18.7 161 107-320 171-332 (461)
134 PRK09853 putative selenate red 99.3 9.5E-11 2.1E-15 123.6 15.8 123 192-327 720-847 (1019)
135 TIGR03315 Se_ygfK putative sel 99.3 1.4E-10 3.1E-15 122.8 17.1 40 106-146 537-576 (1012)
136 PRK07818 dihydrolipoamide dehy 99.3 2.5E-10 5.4E-15 113.5 17.6 162 107-319 173-335 (466)
137 PRK07843 3-ketosteroid-delta-1 99.2 1.4E-10 2.9E-15 117.7 15.6 40 105-145 6-45 (557)
138 PRK12831 putative oxidoreducta 99.2 2E-10 4.2E-15 114.1 16.1 171 107-323 282-462 (464)
139 TIGR02053 MerA mercuric reduct 99.2 3.3E-10 7.1E-15 112.6 17.7 162 107-320 167-329 (463)
140 PF13738 Pyr_redox_3: Pyridine 99.2 5.7E-12 1.2E-16 110.9 4.6 130 110-259 1-147 (203)
141 PRK06416 dihydrolipoamide dehy 99.2 5.4E-10 1.2E-14 111.0 18.9 161 107-319 173-333 (462)
142 COG2072 TrkA Predicted flavopr 99.2 7.7E-11 1.7E-15 116.1 12.7 142 105-261 7-155 (443)
143 PLN02172 flavin-containing mon 99.2 2.3E-10 4.9E-15 113.3 15.6 142 106-260 10-183 (461)
144 TIGR02028 ChlP geranylgeranyl 99.2 2.4E-10 5.2E-15 111.4 15.5 133 107-250 1-160 (398)
145 TIGR02023 BchP-ChlP geranylger 99.2 2.4E-10 5.2E-15 110.9 15.2 130 107-250 1-155 (388)
146 PRK05732 2-octaprenyl-6-methox 99.2 4.3E-10 9.4E-15 109.1 16.8 132 105-251 2-170 (395)
147 PLN00093 geranylgeranyl diphos 99.2 3E-10 6.5E-15 112.2 15.7 135 105-250 38-199 (450)
148 PRK06847 hypothetical protein; 99.2 4.2E-10 9E-15 108.5 16.1 129 106-251 4-164 (375)
149 KOG1298 Squalene monooxygenase 99.2 7.5E-11 1.6E-15 109.8 10.0 135 104-250 43-208 (509)
150 TIGR02485 CobZ_N-term precorri 99.2 1.9E-10 4E-15 113.3 13.6 125 111-250 1-183 (432)
151 PRK07588 hypothetical protein; 99.2 4.7E-10 1E-14 108.9 16.0 127 108-252 2-160 (391)
152 PRK06115 dihydrolipoamide dehy 99.2 1.3E-09 2.7E-14 108.5 19.4 163 107-319 175-337 (466)
153 PRK11445 putative oxidoreducta 99.2 5E-10 1.1E-14 107.3 15.9 129 107-251 2-158 (351)
154 PRK11728 hydroxyglutarate oxid 99.2 3.9E-10 8.5E-15 109.6 15.2 129 106-251 2-205 (393)
155 PRK07845 flavoprotein disulfid 99.2 6.9E-10 1.5E-14 110.3 17.1 158 107-319 178-336 (466)
156 PRK05976 dihydrolipoamide dehy 99.2 6.5E-10 1.4E-14 110.7 16.9 160 107-318 181-341 (472)
157 PRK14694 putative mercuric red 99.2 1.2E-09 2.6E-14 108.7 18.7 155 107-318 179-333 (468)
158 PRK09564 coenzyme A disulfide 99.2 3.7E-10 7.9E-15 111.6 14.8 163 107-319 150-316 (444)
159 PRK07538 hypothetical protein; 99.2 7.2E-10 1.6E-14 108.5 16.8 133 108-251 2-166 (413)
160 TIGR01317 GOGAT_sm_gam glutama 99.2 1E-09 2.2E-14 109.6 18.0 119 197-325 355-482 (485)
161 PRK14727 putative mercuric red 99.2 1.2E-09 2.6E-14 109.0 18.6 156 107-319 189-345 (479)
162 PF07992 Pyr_redox_2: Pyridine 99.2 3.5E-11 7.6E-16 105.5 6.6 156 108-292 1-199 (201)
163 PLN02463 lycopene beta cyclase 99.2 5.9E-10 1.3E-14 109.8 15.8 125 105-251 27-170 (447)
164 PRK06475 salicylate hydroxylas 99.2 6.4E-10 1.4E-14 108.4 16.0 131 108-251 4-168 (400)
165 PRK13369 glycerol-3-phosphate 99.2 6.3E-10 1.4E-14 111.6 16.3 40 105-145 5-44 (502)
166 PTZ00058 glutathione reductase 99.2 8.2E-10 1.8E-14 111.6 17.0 166 107-319 238-431 (561)
167 TIGR02360 pbenz_hydroxyl 4-hyd 99.2 5.9E-10 1.3E-14 108.3 15.2 132 106-251 2-164 (390)
168 PRK06327 dihydrolipoamide dehy 99.2 1E-09 2.2E-14 109.4 17.1 162 107-319 184-346 (475)
169 TIGR03364 HpnW_proposed FAD de 99.2 5E-10 1.1E-14 107.7 14.3 35 107-142 1-35 (365)
170 TIGR01423 trypano_reduc trypan 99.2 8.7E-10 1.9E-14 110.0 16.4 159 107-319 188-350 (486)
171 PRK06115 dihydrolipoamide dehy 99.2 2.2E-10 4.8E-15 113.9 12.1 41 106-147 3-43 (466)
172 PLN02852 ferredoxin-NADP+ redu 99.2 1.5E-09 3.3E-14 107.6 17.9 126 192-324 288-424 (491)
173 PRK12266 glpD glycerol-3-phosp 99.2 6.8E-10 1.5E-14 111.5 15.6 40 105-145 5-44 (508)
174 COG0578 GlpA Glycerol-3-phosph 99.2 4.7E-10 1E-14 110.8 14.0 134 105-250 11-225 (532)
175 PLN02697 lycopene epsilon cycl 99.2 4.7E-10 1E-14 112.3 14.1 123 105-250 107-248 (529)
176 TIGR02374 nitri_red_nirB nitri 99.2 6.2E-10 1.3E-14 117.1 15.6 160 107-319 141-300 (785)
177 TIGR00275 flavoprotein, HI0933 99.2 2.3E-10 4.9E-15 111.6 11.5 123 110-250 1-160 (400)
178 PRK06912 acoL dihydrolipoamide 99.2 1.3E-09 2.9E-14 108.1 16.9 158 107-318 171-328 (458)
179 PRK13748 putative mercuric red 99.1 1.1E-09 2.5E-14 111.3 16.8 155 107-318 271-426 (561)
180 PLN02464 glycerol-3-phosphate 99.1 1.5E-09 3.4E-14 111.3 17.7 64 177-250 231-296 (627)
181 PRK07846 mycothione reductase; 99.1 1.6E-09 3.6E-14 107.2 17.3 157 107-319 167-324 (451)
182 PRK06996 hypothetical protein; 99.1 1.3E-09 2.8E-14 106.2 16.3 130 105-248 10-172 (398)
183 PRK06292 dihydrolipoamide dehy 99.1 1.9E-09 4.2E-14 106.9 17.8 160 107-320 170-331 (460)
184 PRK14989 nitrite reductase sub 99.1 9E-10 2E-14 116.2 16.1 160 108-318 147-308 (847)
185 TIGR01377 soxA_mon sarcosine o 99.1 9.1E-10 2E-14 106.3 14.6 35 107-142 1-35 (380)
186 PRK05976 dihydrolipoamide dehy 99.1 2.1E-10 4.5E-15 114.3 10.3 129 106-250 4-154 (472)
187 PRK05868 hypothetical protein; 99.1 1.3E-09 2.9E-14 105.2 15.6 126 108-251 3-161 (372)
188 TIGR01790 carotene-cycl lycope 99.1 9.8E-10 2.1E-14 106.5 14.6 126 108-250 1-141 (388)
189 PRK11259 solA N-methyltryptoph 99.1 7E-10 1.5E-14 106.9 13.1 36 106-142 3-38 (376)
190 PRK11749 dihydropyrimidine deh 99.1 1.3E-09 2.7E-14 108.3 15.0 173 107-324 274-454 (457)
191 TIGR03452 mycothione_red mycot 99.1 2.5E-09 5.5E-14 105.9 17.0 157 107-319 170-327 (452)
192 PTZ00318 NADH dehydrogenase-li 99.1 4.4E-09 9.5E-14 103.4 18.5 161 108-325 175-351 (424)
193 PRK07251 pyridine nucleotide-d 99.1 2.4E-10 5.1E-15 112.8 9.6 122 106-250 3-130 (438)
194 PRK06416 dihydrolipoamide dehy 99.1 3.4E-10 7.5E-15 112.4 10.8 41 105-147 3-43 (462)
195 TIGR01421 gluta_reduc_1 glutat 99.1 2.6E-10 5.7E-15 112.9 9.7 122 106-250 2-141 (450)
196 PRK07251 pyridine nucleotide-d 99.1 3.2E-09 6.9E-14 104.8 16.9 155 108-318 159-314 (438)
197 PRK14694 putative mercuric red 99.1 6.5E-10 1.4E-14 110.6 11.6 43 103-147 3-45 (468)
198 PRK06753 hypothetical protein; 99.1 1.3E-09 2.9E-14 105.0 13.4 125 108-251 2-153 (373)
199 PTZ00058 glutathione reductase 99.1 6.7E-10 1.5E-14 112.2 11.7 40 105-146 47-86 (561)
200 TIGR03329 Phn_aa_oxid putative 99.1 1.6E-09 3.6E-14 107.5 14.4 37 105-141 23-60 (460)
201 TIGR03385 CoA_CoA_reduc CoA-di 99.1 1.4E-09 3.1E-14 106.9 13.3 162 107-319 138-303 (427)
202 TIGR01438 TGR thioredoxin and 99.1 5.7E-09 1.2E-13 104.2 17.5 160 108-319 182-343 (484)
203 TIGR00136 gidA glucose-inhibit 99.1 2.4E-09 5.2E-14 107.6 14.6 128 107-250 1-154 (617)
204 PRK08294 phenol 2-monooxygenas 99.1 5.3E-09 1.2E-13 107.6 17.3 139 106-251 32-211 (634)
205 PRK13512 coenzyme A disulfide 99.1 2.3E-09 5.1E-14 105.7 13.8 158 107-318 149-310 (438)
206 PTZ00052 thioredoxin reductase 99.0 7.5E-09 1.6E-13 103.7 17.0 156 108-319 184-340 (499)
207 TIGR01373 soxB sarcosine oxida 99.0 4.1E-09 8.8E-14 102.9 14.4 38 105-143 29-68 (407)
208 PRK12409 D-amino acid dehydrog 99.0 8E-09 1.7E-13 101.0 16.2 35 107-142 2-36 (410)
209 TIGR03378 glycerol3P_GlpB glyc 99.0 1E-08 2.2E-13 99.2 16.6 125 180-318 265-419 (419)
210 PRK00711 D-amino acid dehydrog 99.0 5.2E-09 1.1E-13 102.4 14.7 57 179-251 202-258 (416)
211 PRK01747 mnmC bifunctional tRN 99.0 4.1E-09 8.9E-14 109.2 14.6 36 106-142 260-295 (662)
212 COG1252 Ndh NADH dehydrogenase 99.0 6.6E-09 1.4E-13 99.9 14.7 168 107-328 156-338 (405)
213 COG0445 GidA Flavin-dependent 99.0 1.1E-09 2.4E-14 106.5 9.4 128 106-249 4-157 (621)
214 PRK13748 putative mercuric red 99.0 3.1E-09 6.6E-14 108.2 13.0 42 105-148 97-138 (561)
215 PRK12770 putative glutamate sy 99.0 4.7E-09 1E-13 100.6 13.6 168 107-323 173-351 (352)
216 PRK06292 dihydrolipoamide dehy 99.0 1.8E-09 4E-14 107.1 10.8 40 105-146 2-41 (460)
217 TIGR01350 lipoamide_DH dihydro 99.0 1.8E-09 3.8E-14 107.3 10.2 39 107-147 2-40 (461)
218 PRK07818 dihydrolipoamide dehy 99.0 1.6E-09 3.4E-14 107.8 9.4 39 106-146 4-42 (466)
219 PRK06327 dihydrolipoamide dehy 99.0 2.1E-09 4.6E-14 107.1 10.0 130 106-250 4-157 (475)
220 TIGR01438 TGR thioredoxin and 99.0 4.8E-09 1E-13 104.7 12.1 33 106-139 2-34 (484)
221 PTZ00153 lipoamide dehydrogena 99.0 1.8E-08 3.8E-13 103.5 16.4 168 107-319 313-494 (659)
222 KOG2404 Fumarate reductase, fl 99.0 4E-09 8.8E-14 96.4 10.2 132 108-250 11-206 (477)
223 TIGR01423 trypano_reduc trypan 99.0 6.2E-09 1.3E-13 103.9 12.6 43 106-148 3-53 (486)
224 PF00732 GMC_oxred_N: GMC oxid 99.0 7.6E-09 1.6E-13 96.5 12.5 61 182-250 196-258 (296)
225 TIGR03219 salicylate_mono sali 99.0 1.5E-08 3.3E-13 99.2 15.2 125 108-251 2-160 (414)
226 TIGR03140 AhpF alkyl hydropero 99.0 8.9E-09 1.9E-13 103.7 13.8 114 104-250 210-323 (515)
227 KOG0042 Glycerol-3-phosphate d 99.0 6.6E-10 1.4E-14 107.5 5.3 139 102-250 63-287 (680)
228 COG1251 NirB NAD(P)H-nitrite r 98.9 3.4E-09 7.3E-14 106.4 10.1 199 61-321 108-307 (793)
229 PF04820 Trp_halogenase: Trypt 98.9 9.9E-09 2.1E-13 101.6 13.4 65 172-252 148-213 (454)
230 PF05834 Lycopene_cycl: Lycope 98.9 1.5E-08 3.2E-13 98.1 14.3 126 108-251 1-143 (374)
231 PTZ00383 malate:quinone oxidor 98.9 1.3E-08 2.8E-13 101.5 13.8 59 178-251 211-274 (497)
232 COG0446 HcaD Uncharacterized N 98.9 1.3E-08 2.9E-13 98.7 13.7 168 106-319 136-309 (415)
233 PRK14727 putative mercuric red 98.9 6.7E-09 1.5E-13 103.6 11.7 43 105-148 15-57 (479)
234 PLN02927 antheraxanthin epoxid 98.9 2.9E-08 6.4E-13 101.5 16.2 128 105-251 80-249 (668)
235 TIGR01372 soxA sarcosine oxida 98.9 1.7E-08 3.7E-13 108.8 15.3 125 105-250 162-286 (985)
236 TIGR01320 mal_quin_oxido malat 98.9 3.3E-08 7.1E-13 98.6 16.2 62 178-250 178-240 (483)
237 COG1148 HdrA Heterodisulfide r 98.9 4.1E-09 8.9E-14 101.0 8.9 40 105-145 123-162 (622)
238 TIGR02730 carot_isom carotene 98.9 2.6E-08 5.6E-13 99.8 14.9 38 107-145 1-38 (493)
239 PRK05257 malate:quinone oxidor 98.9 4.3E-08 9.4E-13 97.9 16.2 37 105-141 4-41 (494)
240 KOG1336 Monodehydroascorbate/f 98.9 2.7E-08 5.8E-13 95.7 13.8 164 106-317 213-380 (478)
241 TIGR02053 MerA mercuric reduct 98.9 4.6E-09 1E-13 104.4 9.1 38 107-146 1-38 (463)
242 PTZ00052 thioredoxin reductase 98.9 7.8E-09 1.7E-13 103.6 10.7 33 106-139 5-37 (499)
243 COG0665 DadA Glycine/D-amino a 98.9 2.3E-08 5E-13 96.6 12.4 38 105-143 3-40 (387)
244 PTZ00153 lipoamide dehydrogena 98.9 9.4E-09 2E-13 105.5 9.8 44 105-149 115-159 (659)
245 TIGR03169 Nterm_to_SelD pyridi 98.9 6.2E-08 1.4E-12 93.1 15.0 161 107-325 146-314 (364)
246 TIGR02734 crtI_fam phytoene de 98.9 5.3E-08 1.1E-12 97.8 15.0 36 109-145 1-36 (502)
247 PF00743 FMO-like: Flavin-bind 98.8 7.7E-09 1.7E-13 103.9 8.7 133 108-255 3-155 (531)
248 KOG1399 Flavin-containing mono 98.8 5.7E-08 1.2E-12 95.1 14.4 138 106-258 6-161 (448)
249 KOG0399 Glutamate synthase [Am 98.8 7.5E-08 1.6E-12 99.8 15.3 62 83-145 1755-1823(2142)
250 PRK06912 acoL dihydrolipoamide 98.8 2.7E-08 5.9E-13 98.8 12.1 36 108-145 2-37 (458)
251 COG0493 GltD NADPH-dependent g 98.8 7.2E-09 1.6E-13 101.8 7.7 123 191-321 318-450 (457)
252 KOG4716 Thioredoxin reductase 98.8 6.4E-08 1.4E-12 89.2 13.0 123 180-319 240-364 (503)
253 PRK13977 myosin-cross-reactive 98.8 7E-08 1.5E-12 96.5 13.6 40 106-145 22-64 (576)
254 PRK07845 flavoprotein disulfid 98.8 2.5E-08 5.3E-13 99.3 10.4 126 108-250 3-151 (466)
255 PRK13339 malate:quinone oxidor 98.8 1.4E-07 3.1E-12 93.8 14.5 38 104-141 4-42 (497)
256 TIGR01789 lycopene_cycl lycope 98.8 1.2E-07 2.7E-12 91.4 13.4 120 108-250 1-138 (370)
257 PRK09897 hypothetical protein; 98.7 1.8E-07 3.9E-12 93.9 14.8 129 108-251 3-167 (534)
258 PF13454 NAD_binding_9: FAD-NA 98.7 1.6E-07 3.6E-12 79.4 12.1 123 110-248 1-155 (156)
259 PRK07233 hypothetical protein; 98.7 2.8E-07 6E-12 90.4 15.2 37 108-145 1-37 (434)
260 PRK05675 sdhA succinate dehydr 98.7 1.1E-07 2.5E-12 96.7 12.6 121 119-250 1-189 (570)
261 COG3075 GlpB Anaerobic glycero 98.7 1.8E-07 3.8E-12 86.1 12.2 55 182-249 262-316 (421)
262 PF00070 Pyr_redox: Pyridine n 98.7 1.7E-07 3.8E-12 69.9 10.2 78 109-219 2-79 (80)
263 KOG2311 NAD/FAD-utilizing prot 98.7 5.4E-08 1.2E-12 93.2 9.0 128 106-249 28-185 (679)
264 PTZ00188 adrenodoxin reductase 98.7 3.6E-08 7.8E-13 96.9 7.4 39 106-145 39-78 (506)
265 PRK07846 mycothione reductase; 98.7 1.4E-07 3E-12 93.5 11.4 39 106-148 1-39 (451)
266 TIGR03452 mycothione_red mycot 98.7 7.5E-08 1.6E-12 95.4 9.3 39 106-148 2-40 (452)
267 PRK02106 choline dehydrogenase 98.7 2.7E-07 5.9E-12 93.9 13.3 57 185-251 207-263 (560)
268 COG3573 Predicted oxidoreducta 98.7 4.9E-07 1.1E-11 83.4 13.4 144 105-250 4-228 (552)
269 COG3380 Predicted NAD/FAD-depe 98.6 8.2E-08 1.8E-12 86.1 7.7 124 108-248 3-158 (331)
270 KOG2614 Kynurenine 3-monooxyge 98.6 1.6E-07 3.5E-12 89.1 9.5 37 107-144 3-39 (420)
271 KOG2820 FAD-dependent oxidored 98.6 3.7E-07 8E-12 84.3 11.3 36 106-142 7-42 (399)
272 KOG2844 Dimethylglycine dehydr 98.6 2.5E-07 5.3E-12 92.0 10.4 55 180-250 189-243 (856)
273 COG1233 Phytoene dehydrogenase 98.6 9.4E-08 2E-12 95.5 7.8 95 106-212 3-97 (487)
274 TIGR01810 betA choline dehydro 98.6 7.6E-07 1.7E-11 90.1 13.8 57 184-250 199-255 (532)
275 PRK12831 putative oxidoreducta 98.6 1.1E-07 2.3E-12 94.6 7.2 101 105-249 139-239 (464)
276 TIGR02462 pyranose_ox pyranose 98.6 1.2E-06 2.5E-11 88.1 14.1 36 107-143 1-36 (544)
277 PF06039 Mqo: Malate:quinone o 98.5 9.1E-07 2E-11 85.5 12.4 63 179-250 182-244 (488)
278 PTZ00363 rab-GDP dissociation 98.5 1.7E-06 3.6E-11 85.2 14.4 40 105-145 3-42 (443)
279 PRK08255 salicylyl-CoA 5-hydro 98.5 3.4E-07 7.3E-12 96.4 10.1 113 108-250 2-141 (765)
280 PF13450 NAD_binding_8: NAD(P) 98.5 1.1E-07 2.4E-12 68.7 4.1 36 111-147 1-36 (68)
281 TIGR01372 soxA sarcosine oxida 98.5 1.9E-06 4E-11 93.2 14.8 155 107-323 318-473 (985)
282 PRK13512 coenzyme A disulfide 98.5 7.3E-07 1.6E-11 88.1 10.4 115 108-251 3-118 (438)
283 TIGR01816 sdhA_forward succina 98.5 1.1E-06 2.5E-11 89.4 12.1 87 154-250 70-181 (565)
284 PRK11749 dihydropyrimidine deh 98.5 3.6E-07 7.8E-12 90.7 7.7 99 105-250 139-237 (457)
285 PRK09564 coenzyme A disulfide 98.5 8.8E-07 1.9E-11 87.5 10.4 114 108-251 2-116 (444)
286 COG2509 Uncharacterized FAD-de 98.5 2.7E-06 5.8E-11 81.7 13.1 57 179-250 174-230 (486)
287 PRK06567 putative bifunctional 98.4 4.1E-07 8.9E-12 95.6 7.9 39 106-145 383-421 (1028)
288 TIGR01316 gltA glutamate synth 98.4 3.7E-07 8.1E-12 90.4 7.2 98 105-249 132-229 (449)
289 PRK12770 putative glutamate sy 98.4 9.3E-07 2E-11 84.8 9.1 109 106-249 18-129 (352)
290 PRK09754 phenylpropionate diox 98.4 8.1E-07 1.7E-11 86.6 8.8 107 106-250 3-112 (396)
291 KOG2852 Possible oxidoreductas 98.4 1.1E-06 2.3E-11 79.6 8.7 134 107-252 11-210 (380)
292 KOG2853 Possible oxidoreductas 98.4 4.1E-06 8.9E-11 77.6 11.7 37 105-141 85-124 (509)
293 PLN02612 phytoene desaturase 98.4 1.4E-05 2.9E-10 81.6 16.1 40 105-145 92-131 (567)
294 TIGR00137 gid_trmFO tRNA:m(5)U 98.3 4.6E-06 9.9E-11 81.3 11.9 34 108-142 2-35 (433)
295 COG1232 HemY Protoporphyrinoge 98.3 4.1E-06 8.9E-11 81.9 11.5 37 108-145 2-40 (444)
296 PLN02785 Protein HOTHEAD 98.3 3.5E-06 7.5E-11 86.0 11.4 34 105-140 54-87 (587)
297 PRK04965 NADH:flavorubredoxin 98.3 3.8E-06 8.2E-11 81.3 10.8 107 107-250 3-111 (377)
298 COG1231 Monoamine oxidase [Ami 98.3 7E-06 1.5E-10 79.1 12.3 40 105-145 6-45 (450)
299 KOG1800 Ferredoxin/adrenodoxin 98.3 2.1E-06 4.6E-11 80.5 8.3 187 106-340 20-218 (468)
300 KOG2665 Predicted FAD-dependen 98.2 7.7E-06 1.7E-10 75.1 9.4 133 105-250 47-257 (453)
301 KOG4254 Phytoene desaturase [C 98.2 8.3E-06 1.8E-10 78.1 9.6 55 182-251 268-322 (561)
302 KOG3855 Monooxygenase involved 98.2 2.8E-05 6E-10 73.9 12.8 133 105-251 35-218 (481)
303 KOG0029 Amine oxidase [Seconda 98.2 2E-06 4.3E-11 85.8 5.3 40 105-145 14-53 (501)
304 PRK07208 hypothetical protein; 98.2 2.1E-06 4.6E-11 85.6 5.5 39 106-145 4-42 (479)
305 PTZ00318 NADH dehydrogenase-li 98.2 2.3E-05 5.1E-10 77.0 12.6 116 106-250 10-125 (424)
306 PRK05335 tRNA (uracil-5-)-meth 98.2 9.4E-06 2E-10 78.8 9.4 98 107-206 3-126 (436)
307 TIGR02733 desat_CrtD C-3',4' d 98.1 2.4E-06 5.2E-11 85.6 5.3 38 107-145 2-39 (492)
308 COG4529 Uncharacterized protei 98.1 3.3E-05 7.1E-10 75.1 12.7 131 107-252 2-166 (474)
309 PF13434 K_oxygenase: L-lysine 98.1 5.5E-06 1.2E-10 79.0 7.4 133 106-249 2-158 (341)
310 TIGR03169 Nterm_to_SelD pyridi 98.1 1.4E-05 3.1E-10 76.8 9.4 106 108-251 1-108 (364)
311 TIGR00031 UDP-GALP_mutase UDP- 98.1 4E-06 8.6E-11 80.8 5.1 38 107-145 2-39 (377)
312 PLN02268 probable polyamine ox 98.1 4.1E-06 8.8E-11 82.6 5.2 37 108-145 2-38 (435)
313 PRK11883 protoporphyrinogen ox 98.1 3.8E-06 8.3E-11 82.9 4.9 37 108-145 2-40 (451)
314 KOG1238 Glucose dehydrogenase/ 98.0 2.5E-05 5.4E-10 78.3 10.1 38 105-142 56-93 (623)
315 PLN02576 protoporphyrinogen ox 98.0 7.8E-06 1.7E-10 82.0 5.5 40 106-145 12-51 (496)
316 PRK14989 nitrite reductase sub 98.0 3E-05 6.5E-10 82.3 10.1 106 108-250 5-113 (847)
317 COG0562 Glf UDP-galactopyranos 98.0 8.9E-06 1.9E-10 74.9 5.1 38 107-145 2-39 (374)
318 TIGR02374 nitri_red_nirB nitri 98.0 3E-05 6.6E-10 82.0 9.4 106 109-250 1-108 (785)
319 KOG0685 Flavin-containing amin 97.9 0.00013 2.7E-09 70.8 12.3 40 106-145 21-60 (498)
320 TIGR00562 proto_IX_ox protopor 97.9 1.1E-05 2.3E-10 80.1 5.2 39 107-145 3-44 (462)
321 TIGR02731 phytoene_desat phyto 97.9 1.4E-05 3E-10 79.3 5.1 37 108-145 1-37 (453)
322 TIGR03862 flavo_PP4765 unchara 97.9 8.9E-05 1.9E-09 71.4 10.3 80 154-250 59-141 (376)
323 PLN02568 polyamine oxidase 97.9 1.7E-05 3.6E-10 80.2 5.6 39 106-145 5-48 (539)
324 PLN02676 polyamine oxidase 97.9 1.7E-05 3.6E-10 79.4 5.4 42 103-145 23-65 (487)
325 COG3349 Uncharacterized conser 97.8 1.7E-05 3.6E-10 77.8 4.7 37 108-145 2-38 (485)
326 PRK12416 protoporphyrinogen ox 97.8 1.9E-05 4.1E-10 78.5 4.7 38 108-145 3-45 (463)
327 TIGR03377 glycerol3P_GlpA glyc 97.7 0.00016 3.4E-09 73.0 10.1 65 177-251 127-191 (516)
328 TIGR02352 thiamin_ThiO glycine 97.7 0.00023 4.9E-09 67.3 10.6 59 178-252 137-195 (337)
329 COG1252 Ndh NADH dehydrogenase 97.7 0.00028 6.1E-09 68.3 10.5 114 107-257 4-119 (405)
330 KOG1346 Programmed cell death 97.7 7.3E-05 1.6E-09 71.1 6.0 163 107-320 348-519 (659)
331 PLN02529 lysine-specific histo 97.7 5.8E-05 1.3E-09 78.5 5.5 40 105-145 159-198 (738)
332 TIGR02732 zeta_caro_desat caro 97.7 5.4E-05 1.2E-09 75.6 5.1 37 108-145 1-37 (474)
333 PF06100 Strep_67kDa_ant: Stre 97.6 0.0013 2.9E-08 64.5 14.3 39 107-145 3-44 (500)
334 PLN02328 lysine-specific histo 97.6 6.9E-05 1.5E-09 78.5 5.4 39 106-145 238-276 (808)
335 KOG2403 Succinate dehydrogenas 97.6 0.00027 5.9E-09 69.4 9.0 56 277-332 424-481 (642)
336 KOG2495 NADH-dehydrogenase (ub 97.5 0.00082 1.8E-08 64.4 10.9 157 107-318 219-393 (491)
337 TIGR03197 MnmC_Cterm tRNA U-34 97.5 0.00066 1.4E-08 65.7 10.3 58 178-252 135-192 (381)
338 COG1206 Gid NAD(FAD)-utilizing 97.5 0.00035 7.6E-09 64.7 7.8 97 107-205 4-126 (439)
339 COG2303 BetA Choline dehydroge 97.4 0.00014 3.1E-09 73.7 4.6 60 183-250 207-266 (542)
340 PLN02487 zeta-carotene desatur 97.4 0.00017 3.8E-09 73.2 5.2 38 107-145 76-113 (569)
341 PLN03000 amine oxidase 97.3 0.00028 6.1E-09 74.2 5.4 40 105-145 183-222 (881)
342 PLN02976 amine oxidase 97.2 0.0004 8.6E-09 75.9 5.3 40 105-145 692-731 (1713)
343 COG2907 Predicted NAD/FAD-bind 97.2 0.00035 7.6E-09 65.2 4.2 38 106-145 8-45 (447)
344 KOG1276 Protoporphyrinogen oxi 97.2 0.00046 1E-08 66.1 4.5 39 106-145 11-51 (491)
345 PF13434 K_oxygenase: L-lysine 97.0 0.0069 1.5E-07 57.9 11.0 130 106-248 190-339 (341)
346 PRK06567 putative bifunctional 96.9 0.0071 1.5E-07 64.5 10.8 107 191-327 652-775 (1028)
347 KOG1336 Monodehydroascorbate/f 96.9 0.0042 9.1E-08 60.4 8.2 103 106-249 74-180 (478)
348 KOG3851 Sulfide:quinone oxidor 96.8 0.013 2.8E-07 54.4 10.1 36 105-140 38-74 (446)
349 COG3486 IucD Lysine/ornithine 96.6 0.028 6E-07 53.9 11.6 38 105-142 4-41 (436)
350 PF00996 GDI: GDP dissociation 96.6 0.0033 7.1E-08 61.8 5.3 44 105-149 3-46 (438)
351 PLN02172 flavin-containing mon 96.3 0.022 4.9E-07 56.6 9.7 34 106-140 204-237 (461)
352 PRK01438 murD UDP-N-acetylmura 96.2 0.015 3.2E-07 58.2 7.9 32 108-140 18-49 (480)
353 PRK02705 murD UDP-N-acetylmura 95.8 0.012 2.5E-07 58.6 5.0 34 108-142 2-35 (459)
354 COG5044 MRS6 RAB proteins gera 95.5 0.029 6.2E-07 53.1 6.0 41 104-145 4-44 (434)
355 KOG2755 Oxidoreductase [Genera 95.5 0.01 2.2E-07 53.6 2.7 33 109-141 2-35 (334)
356 PRK06370 mercuric reductase; V 95.4 0.023 4.9E-07 56.6 5.4 60 107-167 172-231 (463)
357 PRK05249 soluble pyridine nucl 95.2 0.03 6.5E-07 55.6 5.5 60 107-167 176-235 (461)
358 PF01593 Amino_oxidase: Flavin 94.9 0.024 5.1E-07 54.7 3.6 29 116-145 1-29 (450)
359 PLN02507 glutathione reductase 94.8 0.045 9.7E-07 55.1 5.5 61 107-168 204-264 (499)
360 TIGR01424 gluta_reduc_2 glutat 94.8 0.047 1E-06 54.1 5.5 60 107-167 167-226 (446)
361 PRK08010 pyridine nucleotide-d 94.8 0.051 1.1E-06 53.7 5.6 60 108-168 160-219 (441)
362 COG1249 Lpd Pyruvate/2-oxoglut 94.7 0.054 1.2E-06 53.7 5.5 59 108-167 175-233 (454)
363 PRK06116 glutathione reductase 94.6 0.055 1.2E-06 53.6 5.5 60 107-167 168-227 (450)
364 PLN02546 glutathione reductase 94.6 0.053 1.1E-06 55.3 5.3 61 107-168 253-313 (558)
365 COG1251 NirB NAD(P)H-nitrite r 94.5 0.21 4.6E-06 51.5 9.4 108 107-250 4-113 (793)
366 COG4716 Myosin-crossreactive a 94.2 0.092 2E-06 50.0 5.6 38 108-145 24-64 (587)
367 PRK06467 dihydrolipoamide dehy 94.1 0.077 1.7E-06 53.0 5.2 36 107-143 175-210 (471)
368 PTZ00188 adrenodoxin reductase 94.1 3.4 7.4E-05 41.4 16.5 118 192-323 324-441 (506)
369 TIGR03385 CoA_CoA_reduc CoA-di 93.9 0.17 3.7E-06 49.7 7.2 100 120-250 1-103 (427)
370 COG0569 TrkA K+ transport syst 93.8 0.077 1.7E-06 47.6 4.1 32 108-140 2-33 (225)
371 PF01210 NAD_Gly3P_dh_N: NAD-d 93.7 0.075 1.6E-06 44.7 3.8 31 109-140 2-32 (157)
372 KOG2495 NADH-dehydrogenase (ub 93.6 1 2.2E-05 43.8 11.4 122 106-257 55-178 (491)
373 PF02737 3HCDH_N: 3-hydroxyacy 93.6 0.085 1.8E-06 45.6 3.9 31 109-140 2-32 (180)
374 PF02558 ApbA: Ketopantoate re 93.3 0.12 2.6E-06 42.9 4.3 31 109-140 1-31 (151)
375 KOG4405 GDP dissociation inhib 93.1 0.1 2.2E-06 50.2 3.8 43 105-148 7-49 (547)
376 COG0446 HcaD Uncharacterized N 93.1 0.21 4.5E-06 48.2 6.2 107 109-252 1-108 (415)
377 KOG1439 RAB proteins geranylge 92.9 0.078 1.7E-06 50.8 2.9 40 106-146 4-43 (440)
378 PF13738 Pyr_redox_3: Pyridine 92.9 0.13 2.9E-06 44.5 4.3 34 106-140 167-200 (203)
379 COG3486 IucD Lysine/ornithine 92.9 2.6 5.7E-05 40.8 13.0 128 109-251 190-341 (436)
380 PF13241 NAD_binding_7: Putati 92.9 0.12 2.6E-06 40.2 3.5 33 106-139 7-39 (103)
381 PF00743 FMO-like: Flavin-bind 92.7 0.75 1.6E-05 46.7 9.8 34 106-140 183-216 (531)
382 PRK14106 murD UDP-N-acetylmura 92.6 0.17 3.7E-06 50.1 5.0 33 107-140 6-38 (450)
383 TIGR01470 cysG_Nterm siroheme 92.5 0.17 3.7E-06 44.7 4.3 33 107-140 10-42 (205)
384 PF01262 AlaDh_PNT_C: Alanine 92.3 0.2 4.4E-06 42.6 4.4 33 107-140 21-53 (168)
385 PF01488 Shikimate_DH: Shikima 91.8 0.28 6E-06 40.2 4.5 33 106-139 12-45 (135)
386 PF02254 TrkA_N: TrkA-N domain 91.8 0.24 5.2E-06 39.0 4.0 31 109-140 1-31 (116)
387 PRK06719 precorrin-2 dehydroge 91.7 0.27 5.8E-06 41.5 4.3 32 106-138 13-44 (157)
388 PRK06129 3-hydroxyacyl-CoA deh 91.4 0.22 4.8E-06 46.8 4.0 32 108-140 4-35 (308)
389 COG0686 Ald Alanine dehydrogen 91.4 0.18 3.9E-06 46.9 3.2 34 105-139 167-200 (371)
390 PRK06718 precorrin-2 dehydroge 91.4 0.28 6E-06 43.2 4.4 33 106-139 10-42 (202)
391 TIGR00518 alaDH alanine dehydr 91.3 0.26 5.6E-06 47.7 4.4 34 106-140 167-200 (370)
392 TIGR03143 AhpF_homolog putativ 91.1 0.27 5.7E-06 50.3 4.5 35 107-142 144-178 (555)
393 PF03721 UDPG_MGDP_dh_N: UDP-g 91.0 0.22 4.8E-06 43.2 3.3 32 108-140 2-33 (185)
394 PRK09424 pntA NAD(P) transhydr 91.0 0.25 5.4E-06 49.6 4.0 34 106-140 165-198 (509)
395 PRK10262 thioredoxin reductase 90.9 0.3 6.5E-06 46.0 4.3 35 107-142 147-181 (321)
396 TIGR00561 pntA NAD(P) transhyd 90.8 1.3 2.7E-05 44.6 8.8 34 106-140 164-197 (511)
397 PRK15317 alkyl hydroperoxide r 90.8 0.3 6.6E-06 49.4 4.6 35 107-142 352-386 (517)
398 PF13478 XdhC_C: XdhC Rossmann 90.7 0.79 1.7E-05 37.7 6.1 32 109-141 1-32 (136)
399 TIGR02354 thiF_fam2 thiamine b 90.3 0.42 9E-06 42.0 4.5 33 106-139 21-54 (200)
400 cd00401 AdoHcyase S-adenosyl-L 90.3 0.36 7.8E-06 47.2 4.4 34 106-140 202-235 (413)
401 PRK06249 2-dehydropantoate 2-r 90.3 0.46 9.9E-06 44.7 5.0 32 108-140 7-38 (313)
402 KOG0405 Pyridine nucleotide-di 90.3 1.2 2.6E-05 42.2 7.5 184 107-344 190-376 (478)
403 TIGR01292 TRX_reduct thioredox 90.2 0.36 7.9E-06 44.4 4.2 53 107-166 142-195 (300)
404 PRK08293 3-hydroxybutyryl-CoA 90.0 0.39 8.3E-06 44.6 4.2 32 108-140 5-36 (287)
405 PRK09260 3-hydroxybutyryl-CoA 90.0 0.37 8.1E-06 44.7 4.1 32 108-140 3-34 (288)
406 cd01080 NAD_bind_m-THF_DH_Cycl 89.9 1 2.2E-05 38.4 6.4 34 105-139 43-77 (168)
407 PRK05708 2-dehydropantoate 2-r 89.7 0.49 1.1E-05 44.4 4.7 32 108-140 4-35 (305)
408 PRK07819 3-hydroxybutyryl-CoA 89.5 0.42 9.2E-06 44.4 4.1 33 108-141 7-39 (286)
409 KOG1335 Dihydrolipoamide dehyd 89.2 0.24 5.2E-06 47.4 2.1 59 108-167 213-271 (506)
410 PRK15116 sulfur acceptor prote 89.2 0.6 1.3E-05 43.0 4.7 36 105-141 29-65 (268)
411 PRK06522 2-dehydropantoate 2-r 89.1 0.51 1.1E-05 43.9 4.3 31 108-139 2-32 (304)
412 PRK12921 2-dehydropantoate 2-r 89.1 0.5 1.1E-05 44.0 4.3 30 108-138 2-31 (305)
413 PRK07066 3-hydroxybutyryl-CoA 89.0 0.51 1.1E-05 44.7 4.2 32 108-140 9-40 (321)
414 PF00899 ThiF: ThiF family; I 88.8 0.57 1.2E-05 38.1 4.0 33 107-140 3-36 (135)
415 cd05311 NAD_bind_2_malic_enz N 88.6 0.64 1.4E-05 41.7 4.5 34 106-140 25-61 (226)
416 PRK06035 3-hydroxyacyl-CoA deh 88.6 0.55 1.2E-05 43.7 4.1 32 108-140 5-36 (291)
417 TIGR02733 desat_CrtD C-3',4' d 88.5 2.5 5.4E-05 42.3 9.1 62 177-248 231-292 (492)
418 KOG3923 D-aspartate oxidase [A 88.5 0.45 9.8E-06 44.0 3.3 35 107-141 4-44 (342)
419 PRK12549 shikimate 5-dehydroge 88.3 0.61 1.3E-05 43.4 4.2 32 107-139 128-160 (284)
420 PRK07530 3-hydroxybutyryl-CoA 88.2 0.76 1.6E-05 42.7 4.8 32 108-140 6-37 (292)
421 PRK04148 hypothetical protein; 88.2 0.41 8.9E-06 39.2 2.6 32 107-140 18-49 (134)
422 PRK12475 thiamine/molybdopteri 88.1 0.7 1.5E-05 44.1 4.6 34 106-140 24-58 (338)
423 PRK07688 thiamine/molybdopteri 87.9 0.76 1.7E-05 43.9 4.7 34 106-140 24-58 (339)
424 cd05292 LDH_2 A subgroup of L- 87.8 0.73 1.6E-05 43.4 4.5 32 108-140 2-35 (308)
425 TIGR02356 adenyl_thiF thiazole 87.8 0.85 1.8E-05 40.1 4.6 34 106-140 21-55 (202)
426 PF00670 AdoHcyase_NAD: S-aden 87.8 0.66 1.4E-05 39.2 3.7 33 107-140 24-56 (162)
427 PRK09231 fumarate reductase fl 87.8 0.53 1.1E-05 48.4 3.8 56 268-323 359-416 (582)
428 cd01483 E1_enzyme_family Super 87.5 0.88 1.9E-05 37.4 4.3 31 109-140 2-33 (143)
429 PRK02472 murD UDP-N-acetylmura 87.5 0.66 1.4E-05 45.8 4.2 32 108-140 7-38 (447)
430 PRK05808 3-hydroxybutyryl-CoA 87.4 0.68 1.5E-05 42.8 4.0 32 108-140 5-36 (282)
431 TIGR00936 ahcY adenosylhomocys 87.3 0.78 1.7E-05 44.8 4.4 34 106-140 195-228 (406)
432 KOG1346 Programmed cell death 87.3 1.5 3.2E-05 42.7 6.0 123 105-250 177-311 (659)
433 cd01487 E1_ThiF_like E1_ThiF_l 87.3 0.91 2E-05 38.9 4.4 31 109-140 2-33 (174)
434 PRK12778 putative bifunctional 87.2 0.72 1.6E-05 48.9 4.5 56 107-167 571-627 (752)
435 COG1748 LYS9 Saccharopine dehy 87.1 0.8 1.7E-05 44.3 4.3 31 108-139 3-34 (389)
436 PRK12548 shikimate 5-dehydroge 86.9 0.87 1.9E-05 42.4 4.4 33 107-140 127-160 (289)
437 PTZ00082 L-lactate dehydrogena 86.8 1.1 2.5E-05 42.3 5.2 34 107-141 7-41 (321)
438 PRK08229 2-dehydropantoate 2-r 86.6 0.88 1.9E-05 43.2 4.4 31 108-139 4-34 (341)
439 PRK06263 sdhA succinate dehydr 86.5 0.69 1.5E-05 47.1 3.8 55 269-323 350-405 (543)
440 TIGR01763 MalateDH_bact malate 86.3 1 2.2E-05 42.4 4.5 32 108-140 3-35 (305)
441 PRK10669 putative cation:proto 85.6 1.1 2.3E-05 45.9 4.6 34 106-140 417-450 (558)
442 PRK08644 thiamine biosynthesis 85.6 1.3 2.9E-05 39.2 4.7 34 106-140 28-62 (212)
443 cd01075 NAD_bind_Leu_Phe_Val_D 85.5 1.2 2.6E-05 39.1 4.3 32 107-139 29-60 (200)
444 PRK00066 ldh L-lactate dehydro 85.5 1.5 3.2E-05 41.5 5.2 34 106-140 6-41 (315)
445 PRK05562 precorrin-2 dehydroge 85.3 1.2 2.6E-05 39.8 4.3 33 106-139 25-57 (223)
446 PRK03369 murD UDP-N-acetylmura 85.3 1 2.2E-05 45.2 4.3 31 108-139 14-44 (488)
447 PRK04308 murD UDP-N-acetylmura 85.3 1.4 3E-05 43.7 5.1 32 108-140 7-38 (445)
448 PRK06130 3-hydroxybutyryl-CoA 85.2 1.1 2.4E-05 41.9 4.3 32 108-140 6-37 (311)
449 PRK05476 S-adenosyl-L-homocyst 85.1 1.2 2.5E-05 43.9 4.4 34 106-140 212-245 (425)
450 PRK08306 dipicolinate synthase 84.8 1.3 2.8E-05 41.4 4.4 34 106-140 152-185 (296)
451 COG3634 AhpF Alkyl hydroperoxi 84.7 0.7 1.5E-05 43.8 2.5 35 106-141 354-388 (520)
452 TIGR02355 moeB molybdopterin s 84.7 1.5 3.2E-05 39.7 4.6 34 106-140 24-58 (240)
453 PRK14620 NAD(P)H-dependent gly 84.5 1.3 2.8E-05 41.9 4.3 32 108-140 2-33 (326)
454 cd01078 NAD_bind_H4MPT_DH NADP 84.5 1.6 3.4E-05 37.9 4.6 33 106-139 28-61 (194)
455 PRK12779 putative bifunctional 84.5 1.2 2.5E-05 48.6 4.4 33 107-140 448-480 (944)
456 PRK08641 sdhA succinate dehydr 84.5 0.98 2.1E-05 46.5 3.7 56 268-323 356-412 (589)
457 PLN02545 3-hydroxybutyryl-CoA 84.4 1.2 2.7E-05 41.4 4.1 32 108-140 6-37 (295)
458 PRK11064 wecC UDP-N-acetyl-D-m 84.4 1.3 2.7E-05 43.6 4.3 32 108-140 5-36 (415)
459 PRK06452 sdhA succinate dehydr 84.3 1 2.3E-05 46.0 3.9 53 271-323 350-405 (566)
460 PRK01368 murD UDP-N-acetylmura 84.3 1.4 3.1E-05 43.8 4.7 32 106-139 6-37 (454)
461 cd05291 HicDH_like L-2-hydroxy 84.2 1.5 3.1E-05 41.2 4.5 33 108-141 2-36 (306)
462 TIGR03026 NDP-sugDHase nucleot 84.0 1.1 2.4E-05 43.9 3.8 32 108-140 2-33 (411)
463 PRK05945 sdhA succinate dehydr 84.0 1.3 2.7E-05 45.5 4.3 48 276-323 366-415 (575)
464 PRK08328 hypothetical protein; 83.9 1.6 3.5E-05 39.2 4.5 34 106-140 27-61 (231)
465 PRK01710 murD UDP-N-acetylmura 83.8 1.3 2.9E-05 44.0 4.2 32 108-140 16-47 (458)
466 TIGR01812 sdhA_frdA_Gneg succi 83.8 0.99 2.2E-05 46.2 3.4 46 278-323 357-404 (566)
467 TIGR02853 spore_dpaA dipicolin 83.8 1.5 3.2E-05 40.9 4.3 34 106-140 151-184 (287)
468 PRK05690 molybdopterin biosynt 83.7 1.6 3.6E-05 39.5 4.5 34 106-140 32-66 (245)
469 PRK12550 shikimate 5-dehydroge 83.7 1.6 3.4E-05 40.4 4.4 32 108-140 124-156 (272)
470 TIGR03736 PRTRC_ThiF PRTRC sys 83.7 1.6 3.5E-05 39.5 4.4 35 106-140 11-55 (244)
471 TIGR01176 fum_red_Fp fumarate 83.6 1.2 2.7E-05 45.7 4.1 53 271-323 361-415 (580)
472 PLN02494 adenosylhomocysteinas 83.5 1.5 3.3E-05 43.5 4.5 34 106-140 254-287 (477)
473 cd01339 LDH-like_MDH L-lactate 83.5 1.4 3E-05 41.3 4.0 31 109-140 1-32 (300)
474 PRK00094 gpsA NAD(P)H-dependen 83.5 1.6 3.4E-05 41.0 4.4 32 108-140 3-34 (325)
475 COG1004 Ugd Predicted UDP-gluc 83.4 1.4 3E-05 42.5 3.9 32 108-140 2-33 (414)
476 PRK14619 NAD(P)H-dependent gly 83.2 1.9 4.1E-05 40.4 4.9 32 108-140 6-37 (308)
477 PRK09496 trkA potassium transp 83.1 1.4 3E-05 43.5 4.1 32 108-140 2-33 (453)
478 COG1063 Tdh Threonine dehydrog 83.1 1.5 3.2E-05 42.0 4.1 32 108-140 171-203 (350)
479 PRK04690 murD UDP-N-acetylmura 83.0 1.4 3E-05 44.0 4.1 31 108-139 10-40 (468)
480 TIGR02731 phytoene_desat phyto 82.9 4.5 9.7E-05 40.0 7.6 60 179-248 214-274 (453)
481 PRK07502 cyclohexadienyl dehyd 82.9 1.9 4E-05 40.4 4.7 32 108-140 8-41 (307)
482 PLN02520 bifunctional 3-dehydr 82.8 1.5 3.3E-05 44.5 4.3 32 107-139 380-411 (529)
483 TIGR00507 aroE shikimate 5-deh 82.8 1.7 3.8E-05 39.9 4.3 32 107-139 118-149 (270)
484 TIGR02279 PaaC-3OHAcCoADH 3-hy 82.7 1.5 3.2E-05 44.3 4.1 32 108-140 7-38 (503)
485 PRK06223 malate dehydrogenase; 82.7 1.8 3.9E-05 40.5 4.5 32 108-140 4-36 (307)
486 TIGR01811 sdhA_Bsu succinate d 82.6 1.3 2.8E-05 45.8 3.7 52 271-322 374-426 (603)
487 PRK14027 quinate/shikimate deh 82.5 1.8 3.8E-05 40.3 4.3 32 107-139 128-160 (283)
488 PRK14618 NAD(P)H-dependent gly 82.4 1.8 3.9E-05 41.0 4.4 32 108-140 6-37 (328)
489 PRK07803 sdhA succinate dehydr 82.3 1.4 3E-05 45.7 3.9 47 277-323 402-449 (626)
490 PRK03803 murD UDP-N-acetylmura 82.2 1.6 3.5E-05 43.2 4.2 32 108-140 8-39 (448)
491 PRK06069 sdhA succinate dehydr 82.1 1.4 3E-05 45.2 3.8 45 279-323 370-416 (577)
492 cd00757 ThiF_MoeB_HesA_family 81.9 2.2 4.7E-05 38.2 4.5 34 106-140 21-55 (228)
493 PRK08017 oxidoreductase; Provi 81.8 2 4.4E-05 38.4 4.4 32 108-140 4-36 (256)
494 PRK07326 short chain dehydroge 81.8 2.2 4.7E-05 37.7 4.5 33 107-140 7-40 (237)
495 PRK09077 L-aspartate oxidase; 81.7 1.4 3.1E-05 44.7 3.7 54 269-322 355-410 (536)
496 TIGR01809 Shik-DH-AROM shikima 81.7 2.2 4.7E-05 39.6 4.6 33 106-139 125-158 (282)
497 PRK06481 fumarate reductase fl 81.7 1.5 3.2E-05 44.3 3.7 50 273-322 454-504 (506)
498 PRK00141 murD UDP-N-acetylmura 81.6 1.8 3.9E-05 43.3 4.2 31 108-139 17-47 (473)
499 PRK00258 aroE shikimate 5-dehy 81.6 2 4.4E-05 39.7 4.3 32 107-139 124-156 (278)
500 TIGR02964 xanthine_xdhC xanthi 81.5 2.4 5.2E-05 38.5 4.7 34 106-140 100-133 (246)
No 1
>PLN02661 Putative thiazole synthesis
Probab=100.00 E-value=3.7e-49 Score=368.54 Aligned_cols=315 Identities=77% Similarity=1.141 Sum_probs=263.2
Q ss_pred CCCCCCccccCCCCCCCCCcCccCCcCCCCCccccCccCcccccccccCCCCCCCccccccCcccchhhhHHHHHhHhhc
Q 039605 21 FGNNSCFHGNGIPISSPPSSLLRPYQKPSIKYSSSSRKNDMSISASASASSPPSDLDAFKFDAIKESIVSRETTRRYMTD 100 (352)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (352)
..+.++|++.+.....+.+. +..+........++.+.|||+.|+|.+++|..++|+|.++|+.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~f~~~~e~~is~~i~~~~~~~ 86 (357)
T PLN02661 23 ASSSSSFAGVRLVTSVRAPL----------------ADASAPARSSSSSSTAPYDLNNFKFAPIKESIVSREMTRRYMTD 86 (357)
T ss_pred ccccccccCccccccccCCc----------------cccccccccccCCCCCCCccccccceechhhHhhccchHhHhhh
Confidence 45677888888776544432 23333444455667889999999999999999999999999999
Q ss_pred ccCCCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCc--------ceeecchHHHHHHHcCCccccCCCeE
Q 039605 101 MITHADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGAS--------GSVVRKPAHLFLDELGIDYDEQDNYV 172 (352)
Q Consensus 101 ~~~~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~--------~~~~~~~~~~~l~~~Gi~~~~~~~~~ 172 (352)
+.+..++||+|||+|++|+.||+.|++.+|++|+||||+..+||+. ....+.+..++++++|++|+..+.|.
T Consensus 87 l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~ 166 (357)
T PLN02661 87 MITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYV 166 (357)
T ss_pred hhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCee
Confidence 9999999999999999999999999975489999999998887642 22344567789999999998776677
Q ss_pred EEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCC
Q 039605 173 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPF 252 (352)
Q Consensus 173 ~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~ 252 (352)
...+..++.+.|.+++.++.|+++++++.+.+|+.+++++.|+.++|..+..+..++.+.++..|+||.||+|||+.++.
T Consensus 167 vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ 246 (357)
T PLN02661 167 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPF 246 (357)
T ss_pred EecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcc
Confidence 77777888888998888788999999999999999999999999877543334333333456789999999999987743
Q ss_pred CC------------CCCCCccccccccccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHH
Q 039605 253 GA------------TGVRGMKALDMNTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKS 320 (352)
Q Consensus 253 ~~------------~g~~g~~~~~~~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~ 320 (352)
.. ..+|++..+|++.+|..+++++++++||+|++||.++.++|.+||||+||+|+.||+|+|+.|++.
T Consensus 247 ga~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~ 326 (357)
T PLN02661 247 GATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKA 326 (357)
T ss_pred hhhhhhcccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHH
Confidence 21 124889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCceeeecCceeeeecCCCcccccC
Q 039605 321 LGQPNAMDGTYVGSIHPELVLAASSPAEIADA 352 (352)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (352)
|+.....++......+||+|+| .+++|++||
T Consensus 327 l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 357 (357)
T PLN02661 327 LGLPNALDGTYKPNLHPELVLA-ADDDETADA 357 (357)
T ss_pred Hccchhhcchhhhccchhhhhc-cCccccccC
Confidence 9998888888888999999994 555588886
No 2
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-42 Score=294.92 Aligned_cols=241 Identities=41% Similarity=0.697 Sum_probs=217.0
Q ss_pred ccccCcccchhhhHHHHHhHhhcccCCCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC--------ccee
Q 039605 78 AFKFDAIKESIVSRETTRRYMTDMITHADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA--------SGSV 149 (352)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~--------~~~~ 149 (352)
.|+|.+++|..++|+|+++|+.++.+..+.||+|||+||+||+||++|+++ |+||+|+|++..+||+ ....
T Consensus 2 ~~~f~~~~E~~itraI~~~~~~~l~~~~esDViIVGaGPsGLtAAyyLAk~-g~kV~i~E~~ls~GGG~w~GGmlf~~iV 80 (262)
T COG1635 2 SFKFAPLREVKITRAITERYFEDLLDYLESDVIIVGAGPSGLTAAYYLAKA-GLKVAIFERKLSFGGGIWGGGMLFNKIV 80 (262)
T ss_pred CccccchhhHHHHHHHHHHHHHHHHhhhhccEEEECcCcchHHHHHHHHhC-CceEEEEEeecccCCcccccccccceee
Confidence 478999999999999999999998888889999999999999999999999 9999999999888877 4556
Q ss_pred ecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCC-EEEEEEEcccceeccCCC
Q 039605 150 VRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGN-RVGGIVTNWALVSMNHDS 228 (352)
Q Consensus 150 ~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g-~v~gv~~~~g~~~~~~~~ 228 (352)
++.+..+.|+++|+++...++..+..+..++...|..++. +.|+++++.+.+++++..++ +|.|+.++|.+++...
T Consensus 81 v~~~a~~iL~e~gI~ye~~e~g~~v~ds~e~~skl~~~a~-~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~-- 157 (262)
T COG1635 81 VREEADEILDEFGIRYEEEEDGYYVADSAEFASKLAARAL-DAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAG-- 157 (262)
T ss_pred ecchHHHHHHHhCCcceecCCceEEecHHHHHHHHHHHHH-hcCceeeecceEEEEEEecCCceEEEEEecchhhhcc--
Confidence 7889999999999999988777788888999999988887 67899999999999999988 8999999997655443
Q ss_pred CCCCCCeEEEeCEEEEccCCCCCC----------CCCCCCCccccccccccceeecccccccCceeEecchhhhhcCCCC
Q 039605 229 QSCMDPNVMEAKVVVSSCGHDGPF----------GATGVRGMKALDMNTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPR 298 (352)
Q Consensus 229 ~~~g~~~~i~A~~VIlAtG~~~~~----------~~~g~~g~~~~~~~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r 298 (352)
.+.++.+++|+.||.|||+..+. ....++|+..+|.+++|..+++++++++||+|++||+++.++|.+|
T Consensus 158 -lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av~G~pR 236 (262)
T COG1635 158 -LHVDPLTIRAKAVVDATGHDAEVVSFLAKRIPELGIEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVHGLPR 236 (262)
T ss_pred -cccCcceeeEEEEEeCCCCchHHHHHHHHhccccccccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhhcCCcc
Confidence 45678999999999999997631 2235589999999999999999999999999999999999999999
Q ss_pred CCcchhhhhhchHHHHHHHHHHcCC
Q 039605 299 MGPTFGAMMISGQKAAHLALKSLGQ 323 (352)
Q Consensus 299 ~g~~~~~~~~sG~~aA~~i~~~l~~ 323 (352)
|||+||+|+.||++||+.|++.|+.
T Consensus 237 MGPiFGgMllSGkkaAe~i~e~L~~ 261 (262)
T COG1635 237 MGPIFGGMLLSGKKAAEEILEKLKL 261 (262)
T ss_pred cCchhhhhhhchHHHHHHHHHHhhc
Confidence 9999999999999999999999864
No 3
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=100.00 E-value=1.4e-41 Score=289.30 Aligned_cols=273 Identities=66% Similarity=1.004 Sum_probs=246.6
Q ss_pred cccccccccCCCCCCCccccccCcccchhhhHHHHHhHhhcccCCCCccEEEECCcHHHHHHHHHHhc-CCCCcEEEEec
Q 039605 60 DMSISASASASSPPSDLDAFKFDAIKESIVSRETTRRYMTDMITHADTDVVVVGAGSAGLSCAYEISK-NPNVQVAIIEQ 138 (352)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~la~-~~G~kV~viEk 138 (352)
|..+..+..+.....||.+|+|.|++|+..+|+|.++|+.++.+..+.||||||+|.+||++||..++ +|.+||.+||.
T Consensus 30 s~p~~~~l~~~~~s~d~s~F~FaPIrEStVSRaMTrRYf~DldkyAesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~ 109 (328)
T KOG2960|consen 30 STPVTHCLSDIVKSEDWSDFKFAPIRESTVSRAMTRRYFKDLDKYAESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIES 109 (328)
T ss_pred cCcccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhccceEEECCCccccceeeeeeccCCCceEEEEEe
Confidence 34444455556666788899999999999999999999999988888999999999999999999984 57999999999
Q ss_pred cCCCCCC--------cceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCC
Q 039605 139 SVSPGGA--------SGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGN 210 (352)
Q Consensus 139 ~~~~GG~--------~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g 210 (352)
.-.+||+ +....+.|.+-+|+++|++++..++|....|...+...++.+....+|+++++.+.+++|+...+
T Consensus 110 SVaPGGGaWLGGQLFSAMvvRKPAhLFL~EigvpYedegdYVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g 189 (328)
T KOG2960|consen 110 SVAPGGGAWLGGQLFSAMVVRKPAHLFLQEIGVPYEDEGDYVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPG 189 (328)
T ss_pred eecCCCcccccchhhhhhhhcChHHHHHHHhCCCcccCCCEEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhcccC
Confidence 8888876 45567789999999999999999999999999999999999999999999999999999998632
Q ss_pred -----EEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCC------------CCccccccccccceee
Q 039605 211 -----RVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGV------------RGMKALDMNTAEDAIV 273 (352)
Q Consensus 211 -----~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~------------~g~~~~~~~~g~~~vv 273 (352)
++.||+++|.++..+..+..|.++..+++..|+-+||+.+|++..+. +++.+++++..|..++
T Consensus 190 ~~g~~rvaGVVTNWtLV~qnHgtQsCMDPNviea~~vvS~tGHDGPFGAfcvKRl~si~~~~~l~gMk~LDMN~AEd~iV 269 (328)
T KOG2960|consen 190 EKGEVRVAGVVTNWTLVTQNHGTQSCMDPNVIEAAVVVSTTGHDGPFGAFCVKRLVSIDQNQKLGGMKGLDMNHAEDDIV 269 (328)
T ss_pred cCCceEEEEEEeeeEEeeeccCccccCCCCeeeEEEEEEccCCCCCchhHHHHHHhhhhhhhhcCCCccccccchhhhhh
Confidence 78899999999999999999999999999999999999998875433 8889999999999999
Q ss_pred cccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCCCCCCCCcee
Q 039605 274 KLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNAMDGTYV 332 (352)
Q Consensus 274 ~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~~~~~~~~~~ 332 (352)
.++++.+||++++||.+.+++|.+||||+||+|+.||.+||+.+++.+..++..|+.++
T Consensus 270 ~~trevvpgMiv~GMEvaE~DGanRMGPTFGaMm~SG~kAaq~aLk~f~~~~aid~~~v 328 (328)
T KOG2960|consen 270 IHTREVVPGMIVAGMEVAELDGANRMGPTFGAMMLSGVKAAQQALKHFAAPNAIDGTLV 328 (328)
T ss_pred hhhhhccCceEEeeeeeeeccCCcccCcchhhhhhcchhHHHHHHHHhcCccccccccC
Confidence 99999999999999999999999999999999999999999999999999999888753
No 4
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=100.00 E-value=5.7e-37 Score=279.30 Aligned_cols=232 Identities=42% Similarity=0.711 Sum_probs=193.3
Q ss_pred chhhhHHHHHhHhhcccCCCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCc--------ceeecchHHHH
Q 039605 86 ESIVSRETTRRYMTDMITHADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGAS--------GSVVRKPAHLF 157 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~--------~~~~~~~~~~~ 157 (352)
|..++|+|+++|+.++.+..++||+|||||++|++||+.|+++ |++|+||||+..+|++. ...++.+..++
T Consensus 1 e~~~~~~~~~~~~~~~~~~~~~DVvIVGgGpAGL~aA~~la~~-G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~ 79 (254)
T TIGR00292 1 ESKISRAIVERYFEDLLDYAESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEI 79 (254)
T ss_pred CchhHHHHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCccccCCCcceecccccchHHHH
Confidence 3578999999999998888899999999999999999999999 99999999998877541 11234456788
Q ss_pred HHHcCCccccCCCeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCC--EEEEEEEcccceeccCCCCCCCCCe
Q 039605 158 LDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGN--RVGGIVTNWALVSMNHDSQSCMDPN 235 (352)
Q Consensus 158 l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g--~v~gv~~~~g~~~~~~~~~~~g~~~ 235 (352)
++++|+++...+......+..++.+.|++++. +.|+++++++.+.+++.+++ ++.|+.++|..+.... .+.++.
T Consensus 80 l~~~gi~~~~~~~g~~~~~~~el~~~L~~~a~-e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g---~~~d~~ 155 (254)
T TIGR00292 80 LDEFGIRYEDEGDGYVVADSAEFISTLASKAL-QAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAG---LHVDPL 155 (254)
T ss_pred HHHCCCCeeeccCceEEeeHHHHHHHHHHHHH-HcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccC---CCCCCE
Confidence 99999998765443344566788888888887 56899999999999998877 7999998775322221 122467
Q ss_pred EEEeCEEEEccCCCCCC------------CCCCCCCccccccccccceeecccccccCceeEecchhhhhcCCCCCCcch
Q 039605 236 VMEAKVVVSSCGHDGPF------------GATGVRGMKALDMNTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTF 303 (352)
Q Consensus 236 ~i~A~~VIlAtG~~~~~------------~~~g~~g~~~~~~~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~ 303 (352)
+++|+.||+|||+.+.. ..+.++|+..+|++.+|..++++|++++||+|++||+++.++|.+||||+|
T Consensus 156 ~i~Ak~VVdATG~~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~~~rmgp~f 235 (254)
T TIGR00292 156 TQRSRVVVDATGHDAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGPIF 235 (254)
T ss_pred EEEcCEEEEeecCCchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcCCCCcCchH
Confidence 89999999999987631 122458899999999999999999999999999999999999999999999
Q ss_pred hhhhhchHHHHHHHHHHcC
Q 039605 304 GAMMISGQKAAHLALKSLG 322 (352)
Q Consensus 304 ~~~~~sG~~aA~~i~~~l~ 322 (352)
|+|+.||+|||+.|++.|+
T Consensus 236 g~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 236 GGMLLSGKHVAEQILEKLK 254 (254)
T ss_pred HHHHHhhHHHHHHHHHHhC
Confidence 9999999999999999874
No 5
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=100.00 E-value=1.6e-36 Score=277.10 Aligned_cols=235 Identities=36% Similarity=0.633 Sum_probs=194.3
Q ss_pred cccchhhhHHHHHhHhhcccCCCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCc--------ceeecchH
Q 039605 83 AIKESIVSRETTRRYMTDMITHADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGAS--------GSVVRKPA 154 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~--------~~~~~~~~ 154 (352)
+++|..++|+|+++|+.++.+..++||+||||||+|++||+.|++. |++|+||||...+||+. ....+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~DVvIVGgGpAGl~AA~~la~~-G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~ 80 (257)
T PRK04176 2 ELDEVKITRAIVEEYFEKLLDYLEVDVAIVGAGPSGLTAAYYLAKA-GLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEA 80 (257)
T ss_pred CchHHHHHHHHHHHHHHHHHHhccCCEEEECccHHHHHHHHHHHhC-CCeEEEEecCCCCCCccccCccccccccchHHH
Confidence 4678899999999999999888899999999999999999999999 99999999998877642 12234456
Q ss_pred HHHHHHcCCccccC-CCeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCC-EEEEEEEcccceeccCCCCCCC
Q 039605 155 HLFLDELGIDYDEQ-DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGN-RVGGIVTNWALVSMNHDSQSCM 232 (352)
Q Consensus 155 ~~~l~~~Gi~~~~~-~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g-~v~gv~~~~g~~~~~~~~~~~g 232 (352)
.++++++|+++... ..++ ..+..++...|.+++. +.|+++++++.+.++..+++ ++.|+.++|..+.. .+.+.
T Consensus 81 ~~~l~~~gv~~~~~~~g~~-~vd~~~l~~~L~~~A~-~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~---~g~~~ 155 (257)
T PRK04176 81 DEILDEFGIRYKEVEDGLY-VADSVEAAAKLAAAAI-DAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEM---AGLHV 155 (257)
T ss_pred HHHHHHCCCCceeecCcce-eccHHHHHHHHHHHHH-HcCCEEEcCceeceeeEeCCCcEEEEEEccccccc---cCCCC
Confidence 78899999988654 2232 3456777888888887 57999999999999998766 89999887632111 11122
Q ss_pred CCeEEEeCEEEEccCCCCCC----------CCCCCCCccccccccccceeecccccccCceeEecchhhhhcCCCCCCcc
Q 039605 233 DPNVMEAKVVVSSCGHDGPF----------GATGVRGMKALDMNTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPT 302 (352)
Q Consensus 233 ~~~~i~A~~VIlAtG~~~~~----------~~~g~~g~~~~~~~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~ 302 (352)
+..+++|+.||+|||+++.. ....++|+..+|.+.+|..+++++++++||+|++||+++.++|.+||||+
T Consensus 156 ~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~~~~g~~~~gm~~~~~~~~~rmg~~ 235 (257)
T PRK04176 156 DPLTIEAKAVVDATGHDAEVVSVLARKGPELGIEVPGEKSMWAERGEKLVVENTGEVYPGLYVAGMAANAVHGLPRMGPI 235 (257)
T ss_pred CcEEEEcCEEEEEeCCCcHHHHHHHHHcCCcccccCCccccccCchHHHHHhcCCeEcCCEEEeehhhhhhcCCCccCch
Confidence 45789999999999998742 12234889999999999999999999999999999999999999999999
Q ss_pred hhhhhhchHHHHHHHHHHcCC
Q 039605 303 FGAMMISGQKAAHLALKSLGQ 323 (352)
Q Consensus 303 ~~~~~~sG~~aA~~i~~~l~~ 323 (352)
||+|+.||++||+.|++.|+.
T Consensus 236 fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 236 FGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred hHhHHHhHHHHHHHHHHHhhc
Confidence 999999999999999999875
No 6
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=100.00 E-value=1.7e-34 Score=249.34 Aligned_cols=209 Identities=43% Similarity=0.697 Sum_probs=162.5
Q ss_pred hHHHHHhHhhcccCCCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC--------cceeecchHHHHHHHc
Q 039605 90 SRETTRRYMTDMITHADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA--------SGSVVRKPAHLFLDEL 161 (352)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~--------~~~~~~~~~~~~l~~~ 161 (352)
+|+|+++|++++.+..++||+|||+||+||+||+.|++. |+||+|||++..+||+ ....++.+..+.|+++
T Consensus 1 sraI~~~~~~~l~~~~~~DV~IVGaGpaGl~aA~~La~~-g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~el 79 (230)
T PF01946_consen 1 SRAIIERYFEDLYDYLEYDVAIVGAGPAGLTAAYYLAKA-GLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDEL 79 (230)
T ss_dssp HHHHHHHHHHHHHHHTEESEEEE--SHHHHHHHHHHHHH-TS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHH
T ss_pred ChHHHHHHHHHHHhhccCCEEEECCChhHHHHHHHHHHC-CCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhC
Confidence 578889999988888899999999999999999999999 9999999999888766 3455677889999999
Q ss_pred CCccccCCCeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeC-CEEEEEEEcccceeccCCCCCCCCCeEEEeC
Q 039605 162 GIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-NRVGGIVTNWALVSMNHDSQSCMDPNVMEAK 240 (352)
Q Consensus 162 Gi~~~~~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~-g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~ 240 (352)
|+++...+++.+..+..++...|..++.+ +|+++++.+.+++++..+ ++|.|+.++|.+++.... ..++.+|+|+
T Consensus 80 gi~y~~~~~g~~v~d~~~~~s~L~s~a~~-aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~gl---HvDPl~i~ak 155 (230)
T PF01946_consen 80 GIPYEEYGDGYYVADSVEFTSTLASKAID-AGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGL---HVDPLTIRAK 155 (230)
T ss_dssp T---EE-SSEEEES-HHHHHHHHHHHHHT-TTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT-----T-B-EEEEES
T ss_pred CceeEEeCCeEEEEcHHHHHHHHHHHHhc-CCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhc---CCCcceEEEe
Confidence 99999887888888899999999999884 899999999999999988 899999999976655421 2357899999
Q ss_pred EEEEccCCCCCCCC------------CCCCCccccccccccceeecccccccCceeEecchhhhhcCCCCCCcch
Q 039605 241 VVVSSCGHDGPFGA------------TGVRGMKALDMNTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTF 303 (352)
Q Consensus 241 ~VIlAtG~~~~~~~------------~g~~g~~~~~~~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~ 303 (352)
.||.|||+..+... ..++|+..+|.+.+|..++++|++++||+|++||+++.++|.+||||+|
T Consensus 156 ~ViDaTGHda~v~~~~~kk~~~~~~~~~v~Ge~~m~~~~~E~~vV~~T~eV~PGL~v~GMa~~av~G~~RMGPiF 230 (230)
T PF01946_consen 156 VVIDATGHDAEVVRVLAKKLKLLTPTGKVPGEKSMWAERGEDLVVENTREVYPGLYVAGMAANAVDGGPRMGPIF 230 (230)
T ss_dssp EEEE---SSSSSTSHHHHHHHHTTSSS-----EEB-HHHHHHHHHHCEEEEETTEEE-THHHHHHHT-EB-SSB-
T ss_pred EEEeCCCCchHHHHHHHHHhhhcccccccCCCCCcCcchhHHHHHHhhccccCCEEEechhhHhhcCCCCCCCCC
Confidence 99999999875321 2458999999999999999999999999999999999999999999987
No 7
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.7e-15 Score=139.04 Aligned_cols=123 Identities=16% Similarity=0.157 Sum_probs=89.4
Q ss_pred HHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcc
Q 039605 182 STIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMK 261 (352)
Q Consensus 182 ~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~ 261 (352)
..+.+++.+..++++++++.+.++..++ +.++.+.+. + ++...+..+.|+++.|..+...+. .+.
T Consensus 182 ~~~~~~l~~~~~i~~~~~~~i~ei~G~~--v~~v~l~~~------~----~~~~~~~~~gvf~~iG~~p~~~~~--~~~- 246 (305)
T COG0492 182 EILVERLKKNVKIEVLTNTVVKEILGDD--VEGVVLKNV------K----GEEKELPVDGVFIAIGHLPNTELL--KGL- 246 (305)
T ss_pred HHHHHHHHhcCCeEEEeCCceeEEecCc--cceEEEEec------C----CceEEEEeceEEEecCCCCchHHH--hhc-
Confidence 4667777766699999999999999876 667777542 1 245789999999999976543221 111
Q ss_pred ccccccccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCCCC
Q 039605 262 ALDMNTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPN 325 (352)
Q Consensus 262 ~~~~~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~~~ 325 (352)
....+.+.+.+.+.++|++||+|++||+.... .|+..+. +.+|.+||..+.+||....
T Consensus 247 ~~~~~~g~I~v~~~~~TsvpGifAaGDv~~~~---~rqi~ta---~~~G~~Aa~~a~~~l~~~~ 304 (305)
T COG0492 247 GVLDENGYIVVDEEMETSVPGIFAAGDVADKN---GRQIATA---AGDGAIAALSAERYLESLA 304 (305)
T ss_pred cccCCCCcEEcCCCcccCCCCEEEeEeeccCc---ccEEeeh---hhhHHHHHHHHHHHhhhcc
Confidence 11234566666677999999999999998754 3543333 6789999999999997653
No 8
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.59 E-value=1.9e-14 Score=135.14 Aligned_cols=129 Identities=17% Similarity=0.279 Sum_probs=98.4
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCC-------CC-ccee--------------------------e
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPG-------GA-SGSV--------------------------V 150 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~G-------G~-~~~~--------------------------~ 150 (352)
+.+||+|||||+|||+||+.++++ |.+|+|||+++.+| |+ ++.. .
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~-G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft 80 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKA-GRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT 80 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhc-CCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC
Confidence 368999999999999999999999 99999999998754 22 1111 0
Q ss_pred cchHHHHHHHcCCccccC--CC-eEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCC
Q 039605 151 RKPAHLFLDELGIDYDEQ--DN-YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHD 227 (352)
Q Consensus 151 ~~~~~~~l~~~Gi~~~~~--~~-~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~ 227 (352)
....+.|++.+|+++... +. |+.......+.+.|+.++. +.||+++++++|.++..++..+ .+.++++
T Consensus 81 ~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~-~~gV~i~~~~~v~~v~~~~~~f-~l~t~~g------- 151 (408)
T COG2081 81 PEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELE-ALGVTIRTRSRVSSVEKDDSGF-RLDTSSG------- 151 (408)
T ss_pred HHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHH-HcCcEEEecceEEeEEecCceE-EEEcCCC-------
Confidence 112467888999987654 22 2333567788899999987 6799999999999999987433 4555432
Q ss_pred CCCCCCCeEEEeCEEEEccCCCC
Q 039605 228 SQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 228 ~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
.+|+||.+|+|+|+-+
T Consensus 152 -------~~i~~d~lilAtGG~S 167 (408)
T COG2081 152 -------ETVKCDSLILATGGKS 167 (408)
T ss_pred -------CEEEccEEEEecCCcC
Confidence 4899999999999755
No 9
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.59 E-value=7.9e-15 Score=142.29 Aligned_cols=128 Identities=22% Similarity=0.342 Sum_probs=82.4
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCC-------CC-cceee----------c-----------------
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPG-------GA-SGSVV----------R----------------- 151 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~G-------G~-~~~~~----------~----------------- 151 (352)
|||+|||||++||.||+.|++. |++|+|+||+..+| ++ ++..- .
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~-g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~ 79 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEK-GARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSP 79 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-H
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCH
Confidence 7999999999999999999999 99999999998765 11 11110 0
Q ss_pred chHHHHHHHcCCccccC-CC--eEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCC
Q 039605 152 KPAHLFLDELGIDYDEQ-DN--YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDS 228 (352)
Q Consensus 152 ~~~~~~l~~~Gi~~~~~-~~--~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~ 228 (352)
.....|++++|+++... .. |+......+..+.|++++. +.|++++++++|.++..+++++..+.+++
T Consensus 80 ~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~-~~gv~i~~~~~V~~i~~~~~~~f~v~~~~--------- 149 (409)
T PF03486_consen 80 EDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELK-RLGVEIHFNTRVKSIEKKEDGVFGVKTKN--------- 149 (409)
T ss_dssp HHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHH-HHT-EEE-S--EEEEEEETTEEEEEEETT---------
T ss_pred HHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHH-HcCCEEEeCCEeeeeeecCCceeEeeccC---------
Confidence 12457889999987543 22 2223356677788888886 57999999999999999999888888732
Q ss_pred CCCCCCeEEEeCEEEEccCCCC
Q 039605 229 QSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 229 ~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
..++.||.||+|+|+.+
T Consensus 150 -----~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 150 -----GGEYEADAVILATGGKS 166 (409)
T ss_dssp -----TEEEEESEEEE----SS
T ss_pred -----cccccCCEEEEecCCCC
Confidence 36899999999999865
No 10
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.58 E-value=1.1e-13 Score=135.52 Aligned_cols=119 Identities=15% Similarity=0.144 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCC
Q 039605 179 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVR 258 (352)
Q Consensus 179 ~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~ 258 (352)
+..+.+.+.+.+ .|+++++++++..+...++. ..+.+.++ +..++++|.|++|+|..+.....|+
T Consensus 215 ei~~~~~~~l~~-~gv~i~~~~~v~~~~~~~~~-v~v~~~~g------------~~~~~~ad~vLvAiGR~Pn~~~LgL- 279 (454)
T COG1249 215 EISKELTKQLEK-GGVKILLNTKVTAVEKKDDG-VLVTLEDG------------EGGTIEADAVLVAIGRKPNTDGLGL- 279 (454)
T ss_pred HHHHHHHHHHHh-CCeEEEccceEEEEEecCCe-EEEEEecC------------CCCEEEeeEEEEccCCccCCCCCCh-
Confidence 455566666664 78999999999999887665 34555432 2237999999999997654432222
Q ss_pred Ccccccccc-ccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHH
Q 039605 259 GMKALDMNT-AEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 259 g~~~~~~~~-g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
...++..+. +.+.+.+.+.++.|++|++||+.... | ...-+..+|+.||+.|+.
T Consensus 280 e~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~~~~-----~--Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 280 ENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGP-----M--LAHVAMAEGRIAAENIAG 334 (454)
T ss_pred hhcCceECCCCCEEeCCccccCCCCEEEeeccCCCc-----c--cHhHHHHHHHHHHHHHhC
Confidence 233455444 67677766677799999999997542 2 233457899999999997
No 11
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.57 E-value=4e-14 Score=143.55 Aligned_cols=135 Identities=24% Similarity=0.372 Sum_probs=98.9
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC-------cceee-------c-------------------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA-------SGSVV-------R------------------- 151 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~-------~~~~~-------~------------------- 151 (352)
.++||||||+|.||++||+.+++. |++|+||||....+++ ....+ .
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~-G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~ 82 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASA-GFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQ 82 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHC-CCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCH
Confidence 478999999999999999999999 9999999998665443 11000 0
Q ss_pred ----------chHHHHHHHcCCccccCCC--e----------EEEe-----chHHHHHHHHHHHHcCCCcEEEccceeEE
Q 039605 152 ----------KPAHLFLDELGIDYDEQDN--Y----------VVIK-----HAALFTSTIMSKLLARPNVKLFNAVAAED 204 (352)
Q Consensus 152 ----------~~~~~~l~~~Gi~~~~~~~--~----------~~~~-----~~~~~~~~L~~~~~~~~gv~i~~~t~v~~ 204 (352)
...++||.++|++|+...+ + .... ....+...|.+++. +.|+++++++.+++
T Consensus 83 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~~~~~~ 161 (566)
T PRK06452 83 DAAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTS-GLNVDFYNEWFSLD 161 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHH-hCCCEEEeCcEEEE
Confidence 0135789999999965311 1 0111 13346677777776 46999999999999
Q ss_pred EEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 205 LIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 205 l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
|+.++++|+|+.+.+. ++ ++...+.|+.||+|||+++
T Consensus 162 Li~~~g~v~Gv~~~~~------~~---g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 162 LVTDNKKVVGIVAMQM------KT---LTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred EEEECCEEEEEEEEEC------CC---CeEEEEEeCeEEECCCccc
Confidence 9999999999987431 11 2346899999999999865
No 12
>PRK10262 thioredoxin reductase; Provisional
Probab=99.55 E-value=1.2e-13 Score=130.52 Aligned_cols=120 Identities=18% Similarity=0.164 Sum_probs=80.3
Q ss_pred cCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcccccccccc
Q 039605 190 ARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDMNTAE 269 (352)
Q Consensus 190 ~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~~~g~ 269 (352)
++.|++++.++.+.++..+++++.++.+.++ .+ .++..++.+|.||+++|..+..... .. .+..+.+.
T Consensus 196 ~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~------~~--~~~~~~i~~D~vv~a~G~~p~~~l~--~~--~l~~~~g~ 263 (321)
T PRK10262 196 ENGNIILHTNRTLEEVTGDQMGVTGVRLRDT------QN--SDNIESLDVAGLFVAIGHSPNTAIF--EG--QLELENGY 263 (321)
T ss_pred cCCCeEEEeCCEEEEEEcCCccEEEEEEEEc------CC--CCeEEEEECCEEEEEeCCccChhHh--hc--cccccCCE
Confidence 3678999999999999776556666766431 00 0123579999999999976543221 10 12233344
Q ss_pred ceeec-----ccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCCCCCC
Q 039605 270 DAIVK-----LTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNAM 327 (352)
Q Consensus 270 ~~vv~-----~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~~~~~ 327 (352)
..+.+ +..+..|++|++||+.... .++... ++.+|.+||.+|.+||++..+.
T Consensus 264 i~vd~~~~~~~~~t~~~~VyA~GD~~~~~---~~~~~~---A~~~g~~Aa~~~~~~l~~~~~~ 320 (321)
T PRK10262 264 IKVQSGIHGNATQTSIPGVFAAGDVMDHI---YRQAIT---SAGTGCMAALDAERYLDGLADA 320 (321)
T ss_pred EEECCCCcccccccCCCCEEECeeccCCC---cceEEE---EehhHHHHHHHHHHHHHhcccC
Confidence 33333 5678999999999998532 233222 4789999999999999877653
No 13
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.55 E-value=2.2e-13 Score=135.15 Aligned_cols=113 Identities=16% Similarity=0.159 Sum_probs=75.7
Q ss_pred HHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcc
Q 039605 182 STIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMK 261 (352)
Q Consensus 182 ~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~ 261 (352)
..+.+.+. +.|++++.++.+.++..+++.+. +.+.+ ..++.+|.||+|+|..+.....+.. ..
T Consensus 220 ~~l~~~l~-~~gI~v~~~~~v~~i~~~~~~~~-v~~~~--------------g~~i~~D~vi~a~G~~p~~~~l~l~-~~ 282 (461)
T PRK05249 220 DALSYHLR-DSGVTIRHNEEVEKVEGGDDGVI-VHLKS--------------GKKIKADCLLYANGRTGNTDGLNLE-NA 282 (461)
T ss_pred HHHHHHHH-HcCCEEEECCEEEEEEEeCCeEE-EEECC--------------CCEEEeCEEEEeecCCccccCCCch-hh
Confidence 44555554 56999999999999987655432 33322 2479999999999976543321111 11
Q ss_pred cccc-ccccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHH
Q 039605 262 ALDM-NTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLAL 318 (352)
Q Consensus 262 ~~~~-~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~ 318 (352)
++.. +.+...+.+++++..|++|++||+... +. ....+..+|+.||..|+
T Consensus 283 g~~~~~~G~i~vd~~~~t~~~~IyAiGD~~~~----~~---~~~~A~~~g~~aa~~i~ 333 (461)
T PRK05249 283 GLEADSRGQLKVNENYQTAVPHIYAVGDVIGF----PS---LASASMDQGRIAAQHAV 333 (461)
T ss_pred CcEecCCCcEeeCCCcccCCCCEEEeeecCCC----cc---cHhHHHHHHHHHHHHHc
Confidence 2222 345566678888999999999998742 22 23345789999999987
No 14
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.55 E-value=1e-13 Score=139.31 Aligned_cols=123 Identities=20% Similarity=0.163 Sum_probs=85.9
Q ss_pred HHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcccc
Q 039605 184 IMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKAL 263 (352)
Q Consensus 184 L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~ 263 (352)
+.+++.+..|+++++++.+.++..+++++.++.+.+. . +++..++.+|.|++|+|..+.... .... +
T Consensus 392 l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~------~---~g~~~~i~~D~v~~~~G~~p~~~~---l~~~-v 458 (517)
T PRK15317 392 LQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDR------T---TGEEHHLELEGVFVQIGLVPNTEW---LKGT-V 458 (517)
T ss_pred HHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEEC------C---CCcEEEEEcCEEEEeECCccCchH---Hhhh-e
Confidence 3444554579999999999999887678877776431 1 123468999999999997653322 1111 3
Q ss_pred cc-ccccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCCCC
Q 039605 264 DM-NTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPN 325 (352)
Q Consensus 264 ~~-~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~~~ 325 (352)
.. ..+...+.+++++..||+|++||+.... .++ ...++.+|..||..|.++|..+.
T Consensus 459 ~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~---~k~---~~~A~~eG~~Aa~~~~~~l~~~~ 515 (517)
T PRK15317 459 ELNRRGEIIVDARGATSVPGVFAAGDCTTVP---YKQ---IIIAMGEGAKAALSAFDYLIRNS 515 (517)
T ss_pred eeCCCCcEEECcCCCCCCCCEEECccccCCC---CCE---EEEhhhhHHHHHHHHHHHHhhcC
Confidence 33 2356566678889999999999998532 233 22347899999999999996654
No 15
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.55 E-value=7.3e-14 Score=142.82 Aligned_cols=135 Identities=21% Similarity=0.282 Sum_probs=99.4
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC-------cceeec--------------------------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA-------SGSVVR-------------------------- 151 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~-------~~~~~~-------------------------- 151 (352)
.++||||||+|.|||+||+.+++. |++|+||||....+++ ......
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~-G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~l 106 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVEL-GYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDA 106 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHc-CCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHH
Confidence 578999999999999999999999 9999999998765543 111100
Q ss_pred --------chHHHHHHHcCCccccCCC--eE------------------EEe-----chHHHHHHHHHHHHcCCCcEEEc
Q 039605 152 --------KPAHLFLDELGIDYDEQDN--YV------------------VIK-----HAALFTSTIMSKLLARPNVKLFN 198 (352)
Q Consensus 152 --------~~~~~~l~~~Gi~~~~~~~--~~------------------~~~-----~~~~~~~~L~~~~~~~~gv~i~~ 198 (352)
...++||.++|++|+.... +. ... ....+...|.+++. +.|+++++
T Consensus 107 v~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~-~~gv~i~~ 185 (617)
T PTZ00139 107 IQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSL-KYDCNFFI 185 (617)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHH-hCCCEEEe
Confidence 1245899999999965311 11 000 12356677777776 57999999
Q ss_pred cceeEEEEE-eCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 199 AVAAEDLIV-KGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 199 ~t~v~~l~~-~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
++.+++|+. ++++|.|+...+ ..+ ++...|.|+.||+|||+++
T Consensus 186 ~~~~~~Li~~~~g~v~Gv~~~~------~~~---g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 186 EYFALDLIMDEDGECRGVIAMS------MED---GSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred ceEEEEEEECCCCEEEEEEEEE------CCC---CeEEEEECCcEEEeCCCCc
Confidence 999999998 678999987632 112 2456899999999999875
No 16
>PRK06116 glutathione reductase; Validated
Probab=99.54 E-value=2.6e-13 Score=134.26 Aligned_cols=115 Identities=8% Similarity=0.172 Sum_probs=76.1
Q ss_pred HHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcc
Q 039605 182 STIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMK 261 (352)
Q Consensus 182 ~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~ 261 (352)
..+.+.+. +.|++++.++.+.++..+++....+.+.+ ..++.+|.||+|+|..+.....+.. ..
T Consensus 212 ~~l~~~L~-~~GV~i~~~~~V~~i~~~~~g~~~v~~~~--------------g~~i~~D~Vv~a~G~~p~~~~l~l~-~~ 275 (450)
T PRK06116 212 ETLVEEME-KKGIRLHTNAVPKAVEKNADGSLTLTLED--------------GETLTVDCLIWAIGREPNTDGLGLE-NA 275 (450)
T ss_pred HHHHHHHH-HCCcEEECCCEEEEEEEcCCceEEEEEcC--------------CcEEEeCEEEEeeCCCcCCCCCCch-hc
Confidence 34444444 67999999999999987644322344432 2479999999999976543321111 11
Q ss_pred cccc-ccccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHH
Q 039605 262 ALDM-NTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 262 ~~~~-~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
++.. ..+...+.+++++..|++|++||+.... +....++.+|+.||+.+..
T Consensus 276 g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~-------~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 276 GVKLNEKGYIIVDEYQNTNVPGIYAVGDVTGRV-------ELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CceECCCCcEecCCCCCcCCCCEEEEeecCCCc-------CcHHHHHHHHHHHHHHHhC
Confidence 2332 2455666788889999999999997421 2234557899999998864
No 17
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.54 E-value=5.7e-14 Score=142.93 Aligned_cols=137 Identities=22% Similarity=0.327 Sum_probs=99.3
Q ss_pred CCCccEEEECCcHHHHHHHHHHhcCCC---CcEEEEeccCCCCCC-------cceeec----------------------
Q 039605 104 HADTDVVVVGAGSAGLSCAYEISKNPN---VQVAIIEQSVSPGGA-------SGSVVR---------------------- 151 (352)
Q Consensus 104 ~~~~DVvIIGgG~aGl~aA~~la~~~G---~kV~viEk~~~~GG~-------~~~~~~---------------------- 151 (352)
..++||||||+|.|||+||+.+++. | ++|+||||....+++ ....+.
T Consensus 3 ~~~~DVlVVG~G~AGl~AA~~Aa~~-G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~ 81 (577)
T PRK06069 3 VLKYDVVIVGSGLAGLRAAVAAAER-SGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLA 81 (577)
T ss_pred ceecCEEEECccHHHHHHHHHHHHh-CCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccC
Confidence 3578999999999999999999998 8 899999998765543 111010
Q ss_pred ------------chHHHHHHHcCCccccCCC--eE----------EEec-----hHHHHHHHHHHHHcCCCcEEEcccee
Q 039605 152 ------------KPAHLFLDELGIDYDEQDN--YV----------VIKH-----AALFTSTIMSKLLARPNVKLFNAVAA 202 (352)
Q Consensus 152 ------------~~~~~~l~~~Gi~~~~~~~--~~----------~~~~-----~~~~~~~L~~~~~~~~gv~i~~~t~v 202 (352)
...++||+++|++|+.... +. ...+ ...+.+.|.+++.+..|+++++++.+
T Consensus 82 d~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v 161 (577)
T PRK06069 82 DQDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFV 161 (577)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEE
Confidence 0135788999999865321 11 1111 23466777877765579999999999
Q ss_pred EEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 203 EDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 203 ~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
++|+.+++++.|+...+ ..+ ++...|.|+.||+|||+.+
T Consensus 162 ~~Li~~~g~v~Gv~~~~------~~~---g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 162 TSLIVENGVFKGVTAID------LKR---GEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred EEEEEECCEEEEEEEEE------cCC---CeEEEEECCcEEEcCchhc
Confidence 99999889999987632 111 1345799999999999873
No 18
>PLN02546 glutathione reductase
Probab=99.54 E-value=8.4e-13 Score=133.19 Aligned_cols=114 Identities=13% Similarity=0.149 Sum_probs=72.5
Q ss_pred HHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCccc
Q 039605 183 TIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKA 262 (352)
Q Consensus 183 ~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~ 262 (352)
.+.+.+. +.|++++.++.+.++..+++....+...+ .....+|.||+|+|..+.....+. ...+
T Consensus 298 ~l~~~L~-~~GV~i~~~~~v~~i~~~~~g~v~v~~~~--------------g~~~~~D~Viva~G~~Pnt~~L~l-e~~g 361 (558)
T PLN02546 298 FVAEQMS-LRGIEFHTEESPQAIIKSADGSLSLKTNK--------------GTVEGFSHVMFATGRKPNTKNLGL-EEVG 361 (558)
T ss_pred HHHHHHH-HCCcEEEeCCEEEEEEEcCCCEEEEEECC--------------eEEEecCEEEEeeccccCCCcCCh-hhcC
Confidence 3344443 67999999999999876433322233211 133458999999997654422111 1122
Q ss_pred cccc-cccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHH
Q 039605 263 LDMN-TAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 263 ~~~~-~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
+..+ .+.+.+.+++++..|++|++||+.... .....++.+|..+|..++.
T Consensus 362 l~~d~~G~I~VD~~l~Ts~p~IYAaGDv~~~~-------~l~~~A~~~g~~~a~~i~g 412 (558)
T PLN02546 362 VKMDKNGAIEVDEYSRTSVPSIWAVGDVTDRI-------NLTPVALMEGGALAKTLFG 412 (558)
T ss_pred CcCCCCCcEeECCCceeCCCCEEEeeccCCCc-------ccHHHHHHHHHHHHHHHcC
Confidence 3333 456666788899999999999998532 1233557789999988864
No 19
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.54 E-value=1.1e-13 Score=136.06 Aligned_cols=133 Identities=19% Similarity=0.280 Sum_probs=97.0
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcce-----e--------------------e---------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGS-----V--------------------V--------- 150 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~-----~--------------------~--------- 150 (352)
.++||||||+|.||++||+.++ . |++|+||||....+++... . .
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~-G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~ 80 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-K-DLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKI 80 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-c-CCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHH
Confidence 4789999999999999999984 6 9999999999876654110 0 0
Q ss_pred ----cchHHHHHHHcCCccccCCC---eE--------EEe-----chHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCC
Q 039605 151 ----RKPAHLFLDELGIDYDEQDN---YV--------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGN 210 (352)
Q Consensus 151 ----~~~~~~~l~~~Gi~~~~~~~---~~--------~~~-----~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g 210 (352)
....++||.++|++|+.... +. ... ....+...|++++.++.|+++++++.+++|+.+++
T Consensus 81 ~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~ 160 (433)
T PRK06175 81 LANESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIENDN 160 (433)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCC
Confidence 01245789999998865321 10 010 12356677887777667999999999999998888
Q ss_pred EEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 211 RVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 211 ~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
++.|+..... ++..++.|+.||+|||+++
T Consensus 161 ~v~Gv~~~~~-----------g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 161 TCIGAICLKD-----------NKQINIYSKVTILATGGIG 189 (433)
T ss_pred EEEEEEEEEC-----------CcEEEEEcCeEEEccCccc
Confidence 9988765211 1235799999999999854
No 20
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.54 E-value=1.2e-13 Score=140.63 Aligned_cols=135 Identities=21% Similarity=0.318 Sum_probs=98.5
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC-------cceee-----c---------------------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA-------SGSVV-----R--------------------- 151 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~-------~~~~~-----~--------------------- 151 (352)
.++||||||+|.|||+||+.+++. |++|+||||....+|+ ..... .
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~-G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~ 84 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQS-GQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDA 84 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHc-CCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHH
Confidence 368999999999999999999999 9999999998665543 10000 0
Q ss_pred --------chHHHHHHHcCCccccCC--CeE-----------------EEe-----chHHHHHHHHHHHHcCCCcEEEcc
Q 039605 152 --------KPAHLFLDELGIDYDEQD--NYV-----------------VIK-----HAALFTSTIMSKLLARPNVKLFNA 199 (352)
Q Consensus 152 --------~~~~~~l~~~Gi~~~~~~--~~~-----------------~~~-----~~~~~~~~L~~~~~~~~gv~i~~~ 199 (352)
...++||+++|++|+... .+. ... ....+...|.+++. +.|++++++
T Consensus 85 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gi~i~~~ 163 (588)
T PRK08958 85 IEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNL-KNHTTIFSE 163 (588)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhh-hcCCEEEeC
Confidence 124589999999996531 111 001 13456677777665 579999999
Q ss_pred ceeEEEEEe-CCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 200 VAAEDLIVK-GNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 200 t~v~~l~~~-~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
+.+++|+.+ +++|.|+...+ ..+ ++...|.|+.||+|||+++
T Consensus 164 ~~~~~Li~~~~g~v~Gv~~~~------~~~---g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 164 WYALDLVKNQDGAVVGCTAIC------IET---GEVVYFKARATVLATGGAG 206 (588)
T ss_pred cEEEEEEECCCCEEEEEEEEE------cCC---CcEEEEEcCeEEECCCCcc
Confidence 999999985 68999998732 111 2456899999999999875
No 21
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.54 E-value=1.2e-13 Score=141.73 Aligned_cols=136 Identities=21% Similarity=0.208 Sum_probs=95.1
Q ss_pred CCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC--------ccee-----------------------e--
Q 039605 104 HADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA--------SGSV-----------------------V-- 150 (352)
Q Consensus 104 ~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~--------~~~~-----------------------~-- 150 (352)
+.++||||||+|.|||+||+.|++. |++|+||||...++++ .... .
T Consensus 33 ~~~~DVlVVG~G~AGl~AAi~Aae~-G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~~~~~~d~~~~g~~~~d 111 (640)
T PRK07573 33 KRKFDVIVVGTGLAGASAAATLGEL-GYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTVKGGDFRAR 111 (640)
T ss_pred ccccCEEEECccHHHHHHHHHHHHc-CCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCHHHHHHHHHHhcCCCCC
Confidence 3578999999999999999999999 9999999987655422 0000 0
Q ss_pred ----------cchHHHHHHHcCCccccCCC--eEE----------Eec-----hHHHH----HHHHHHHHcCCCcEEEcc
Q 039605 151 ----------RKPAHLFLDELGIDYDEQDN--YVV----------IKH-----AALFT----STIMSKLLARPNVKLFNA 199 (352)
Q Consensus 151 ----------~~~~~~~l~~~Gi~~~~~~~--~~~----------~~~-----~~~~~----~~L~~~~~~~~gv~i~~~ 199 (352)
....++||.++|++|+.... +.. ..+ ...+. +.|.+.+. +.|++++++
T Consensus 112 ~~lv~~l~~~s~~~i~wL~~~GV~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~~~l~~~L~~~~~-~~gV~i~~~ 190 (640)
T PRK07573 112 EANVYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYQALSRQIA-AGTVKMYTR 190 (640)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCCceeccccCCcccceeEeCCCCCchhHHHHHHHHHHHHHH-hcCCEEEec
Confidence 01245889999999964311 100 000 11222 33444454 679999999
Q ss_pred ceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 200 VAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 200 t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
+.+++|+.++++|.|+.+.+. . +++...|.||.||+|||+++
T Consensus 191 t~v~~Li~d~g~V~GV~~~~~------~---~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 191 TEMLDLVVVDGRARGIVARNL------V---TGEIERHTADAVVLATGGYG 232 (640)
T ss_pred eEEEEEEEeCCEEEEEEEEEC------C---CCcEEEEECCEEEECCCCcc
Confidence 999999998899999987431 1 12346799999999999965
No 22
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.54 E-value=1.2e-13 Score=140.37 Aligned_cols=137 Identities=22% Similarity=0.318 Sum_probs=99.1
Q ss_pred CCccEEEECCcHHHHHHHHHHhcC-CCCcEEEEeccCCCCCCcce-------ee--------------------------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKN-PNVQVAIIEQSVSPGGASGS-------VV-------------------------- 150 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~-~G~kV~viEk~~~~GG~~~~-------~~-------------------------- 150 (352)
.++||||||+|.|||+||+.+++. +|++|+||||....+++... ..
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v 82 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVV 82 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHHH
Confidence 478999999999999999999976 15899999998765543100 00
Q ss_pred ------cchHHHHHHHcCCccccCCC--eEE----------Ee-----chHHHHHHHHHHHHcCCCcEEEccceeEEEEE
Q 039605 151 ------RKPAHLFLDELGIDYDEQDN--YVV----------IK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV 207 (352)
Q Consensus 151 ------~~~~~~~l~~~Gi~~~~~~~--~~~----------~~-----~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~ 207 (352)
....++||+++|++|+...+ +.. .. ....+...|++++.+..+++++.++.+++|+.
T Consensus 83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~ 162 (582)
T PRK09231 83 EYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILV 162 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEEE
Confidence 01245889999999975321 110 11 12356677777776656899999999999999
Q ss_pred eCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 208 KGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 208 ~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
++++|.|+...+ ..+ ++...+.|+.||+|||+++
T Consensus 163 ~~g~v~Gv~~~~------~~~---g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 163 DDGHVRGLVAMN------MME---GTLVQIRANAVVMATGGAG 196 (582)
T ss_pred eCCEEEEEEEEE------cCC---CcEEEEECCEEEECCCCCc
Confidence 889999987621 111 2346899999999999876
No 23
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.53 E-value=1.3e-13 Score=141.26 Aligned_cols=135 Identities=21% Similarity=0.295 Sum_probs=99.1
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC-------cceeec--------------------------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA-------SGSVVR-------------------------- 151 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~-------~~~~~~-------------------------- 151 (352)
.++||||||+|.|||.||+.+++. |++|+||||....+++ ......
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~-G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~l 127 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEH-GFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDA 127 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhc-CCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHH
Confidence 478999999999999999999999 9999999998765543 111000
Q ss_pred --------chHHHHHHHcCCccccCCC--eE------------------EEe-----chHHHHHHHHHHHHcCCCcEEEc
Q 039605 152 --------KPAHLFLDELGIDYDEQDN--YV------------------VIK-----HAALFTSTIMSKLLARPNVKLFN 198 (352)
Q Consensus 152 --------~~~~~~l~~~Gi~~~~~~~--~~------------------~~~-----~~~~~~~~L~~~~~~~~gv~i~~ 198 (352)
...++||.++|++|+...+ +. ... ....+...|.+++. +.|++++.
T Consensus 128 v~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~-~~gv~i~~ 206 (635)
T PLN00128 128 IQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAM-KHNTQFFV 206 (635)
T ss_pred HHHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHH-hCCCEEEE
Confidence 1245889999999974311 10 000 12346677777776 46999999
Q ss_pred cceeEEEEEe-CCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 199 AVAAEDLIVK-GNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 199 ~t~v~~l~~~-~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
++.+++|+.+ +++|.|+...+ .. +++...|.|+.||+|||+++
T Consensus 207 ~~~~~~Li~~~~g~v~Gv~~~~------~~---~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 207 EYFALDLIMDSDGACQGVIALN------ME---DGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred eeEEEEEEEcCCCEEEEEEEEE------cC---CCeEEEEEcCeEEECCCCCc
Confidence 9999999987 68999997632 11 12457899999999999975
No 24
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.53 E-value=3.9e-13 Score=132.81 Aligned_cols=113 Identities=10% Similarity=0.178 Sum_probs=74.2
Q ss_pred HHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCccc
Q 039605 183 TIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKA 262 (352)
Q Consensus 183 ~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~ 262 (352)
.+.+.+. +.|++++.++.+.++..+++.+ .+.+.+ ..++.+|.||+|+|..+.....+.. ..+
T Consensus 212 ~l~~~l~-~~gV~i~~~~~v~~i~~~~~~~-~v~~~~--------------g~~i~~D~viva~G~~pn~~~l~l~-~~g 274 (446)
T TIGR01424 212 LLARNME-GRGIRIHPQTSLTSITKTDDGL-KVTLSH--------------GEEIVADVVLFATGRSPNTKGLGLE-AAG 274 (446)
T ss_pred HHHHHHH-HCCCEEEeCCEEEEEEEcCCeE-EEEEcC--------------CcEeecCEEEEeeCCCcCCCcCCcc-ccC
Confidence 3444444 5799999999999997655443 233322 2479999999999976543221111 122
Q ss_pred ccc-ccccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHH
Q 039605 263 LDM-NTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 263 ~~~-~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
+.. +.+...+.++++++.|++|++||+.... +....+..+|+.+|+.|+.
T Consensus 275 ~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~-------~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 275 VELNDAGAIAVDEYSRTSIPSIYAVGDVTDRI-------NLTPVAIMEATCFANTEFG 325 (446)
T ss_pred eEECCCCcEEeCCCCccCCCCEEEeeccCCCc-------cchhHHHHHHHHHHHHHhc
Confidence 333 2355666788899999999999997421 2233557789999988863
No 25
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.53 E-value=2.5e-13 Score=130.44 Aligned_cols=131 Identities=24% Similarity=0.449 Sum_probs=100.2
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCC-------CCcceeec-----------------------------
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPG-------GASGSVVR----------------------------- 151 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~G-------G~~~~~~~----------------------------- 151 (352)
||+|||+|.|||++|+.|++. ++|+||-|..... |+....+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~--~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv 86 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS--FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIV 86 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC--CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 999999999999999999874 8999999987542 22221111
Q ss_pred ---chHHHHHHHcCCccccCC--CeEEE----------ec-----hHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCC-
Q 039605 152 ---KPAHLFLDELGIDYDEQD--NYVVI----------KH-----AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGN- 210 (352)
Q Consensus 152 ---~~~~~~l~~~Gi~~~~~~--~~~~~----------~~-----~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g- 210 (352)
...++||.++|++|+... .|.+. .| ...+.+.|.+++.++++|+++.++.+.+|+.+++
T Consensus 87 ~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~ 166 (518)
T COG0029 87 SEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGI 166 (518)
T ss_pred HhHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCc
Confidence 135689999999999764 24332 12 2467789999999889999999999999999988
Q ss_pred EEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 211 RVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 211 ~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
.+.|+.+.+. . ++..+|.++.||+|||+.+
T Consensus 167 ~~~Gv~~~~~------~----~~~~~~~a~~vVLATGG~g 196 (518)
T COG0029 167 GVAGVLVLNR------N----GELGTFRAKAVVLATGGLG 196 (518)
T ss_pred eEeEEEEecC------C----CeEEEEecCeEEEecCCCc
Confidence 5558887431 0 0247899999999999865
No 26
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.52 E-value=1.1e-13 Score=135.56 Aligned_cols=133 Identities=26% Similarity=0.351 Sum_probs=90.8
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCccee----------e-------c-------------------
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSV----------V-------R------------------- 151 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~----------~-------~------------------- 151 (352)
||||||+|.+|++||+.|+++ |++|+||||.+..||+.... . .
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~-G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEA-GAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDP 79 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHT-TT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-H
T ss_pred CEEEECCCHHHHHHHHHHhhh-cCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeeccccccccc
Confidence 899999999999999999999 99999999998866541000 0 0
Q ss_pred ----------chHHHHHHHcCCccccC--C------------CeEEEe-----------chHHHHHHHHHHHHcCCCcEE
Q 039605 152 ----------KPAHLFLDELGIDYDEQ--D------------NYVVIK-----------HAALFTSTIMSKLLARPNVKL 196 (352)
Q Consensus 152 ----------~~~~~~l~~~Gi~~~~~--~------------~~~~~~-----------~~~~~~~~L~~~~~~~~gv~i 196 (352)
....+||+++|++|... + .+.... ....+...|.+.+. +.|++|
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~gv~i 158 (417)
T PF00890_consen 80 DLVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAE-EAGVDI 158 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHH-HTTEEE
T ss_pred chhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHh-hcCeee
Confidence 01357888899888761 0 100111 23445677777776 568999
Q ss_pred EccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCC
Q 039605 197 FNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 197 ~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
++++.+++|+.++++|+|+...+. .+++..+|+|+.||+|||++..
T Consensus 159 ~~~~~~~~Li~e~g~V~Gv~~~~~---------~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 159 RFNTRVTDLITEDGRVTGVVAENP---------ADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp EESEEEEEEEEETTEEEEEEEEET---------TTCEEEEEEESEEEE----BGG
T ss_pred eccceeeeEEEeCCceeEEEEEEC---------CCCeEEEEeeeEEEeccCcccc
Confidence 999999999999999999998521 1224578999999999998874
No 27
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.52 E-value=1.6e-13 Score=139.62 Aligned_cols=136 Identities=22% Similarity=0.311 Sum_probs=96.8
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCC-CCcEEEEeccCCCCCC-------cceee------c-------------------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNP-NVQVAIIEQSVSPGGA-------SGSVV------R------------------- 151 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~-G~kV~viEk~~~~GG~-------~~~~~------~------------------- 151 (352)
.++||||||+|.||++||+.|++.+ |++|+||||....+++ ..... .
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~ 81 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQ 81 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCH
Confidence 4689999999999999999999761 4899999998765532 00000 0
Q ss_pred ----------chHHHHHHHcCCccccCC--CeE----------EEe-----chHHHHHHHHHHHHcCCCcEEEccceeEE
Q 039605 152 ----------KPAHLFLDELGIDYDEQD--NYV----------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAED 204 (352)
Q Consensus 152 ----------~~~~~~l~~~Gi~~~~~~--~~~----------~~~-----~~~~~~~~L~~~~~~~~gv~i~~~t~v~~ 204 (352)
...++||+++|++|+... .+. ... ....+...|.+.+. +.|+++++++.+++
T Consensus 82 ~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~-~~gi~i~~~t~v~~ 160 (575)
T PRK05945 82 DAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLR-RYGVTIYDEWYVMR 160 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHh-hCCCEEEeCcEEEE
Confidence 113478889999986532 111 011 12456677777776 57999999999999
Q ss_pred EEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 205 LIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 205 l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
|+.++++|.|+...+ ..+ ++...+.|+.||+|||+++
T Consensus 161 L~~~~g~v~Gv~~~~------~~~---g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 161 LILEDNQAKGVVMYH------IAD---GRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred EEEECCEEEEEEEEE------cCC---CeEEEEECCEEEECCCCCc
Confidence 999889999987522 111 1345799999999999975
No 28
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.52 E-value=1.7e-13 Score=139.84 Aligned_cols=135 Identities=24% Similarity=0.310 Sum_probs=97.7
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC-------cceeec--------------------------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA-------SGSVVR-------------------------- 151 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~-------~~~~~~-------------------------- 151 (352)
.++||||||+|.|||+||+.|++. |++|+||||....+++ ......
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~-G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~l 89 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEA-GLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDA 89 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHc-CCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHH
Confidence 578999999999999999999999 9999999998654433 111000
Q ss_pred --------chHHHHHHHcCCccccCCC--eEE------------------Ee-----chHHHHHHHHHHHHcCCCcEEEc
Q 039605 152 --------KPAHLFLDELGIDYDEQDN--YVV------------------IK-----HAALFTSTIMSKLLARPNVKLFN 198 (352)
Q Consensus 152 --------~~~~~~l~~~Gi~~~~~~~--~~~------------------~~-----~~~~~~~~L~~~~~~~~gv~i~~ 198 (352)
...++||.++|++|+.... +.. .. ....+...|++.+. +.|+++++
T Consensus 90 v~~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~-~~gi~i~~ 168 (598)
T PRK09078 90 IEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSL-KHNAEFFI 168 (598)
T ss_pred HHHHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHh-hcCCEEEE
Confidence 1135788999999864311 110 00 12346677777776 57999999
Q ss_pred cceeEEEEEeC-CEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 199 AVAAEDLIVKG-NRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 199 ~t~v~~l~~~~-g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
++.+++|+.++ ++|.|+...+ .++ ++...|.|+.||+|||+++
T Consensus 169 ~~~v~~Li~~~~g~v~Gv~~~~------~~~---g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 169 EYFALDLIMDDGGVCRGVVAWN------LDD---GTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred eEEEEEEEEcCCCEEEEEEEEE------CCC---CcEEEEEcCEEEECCCCCc
Confidence 99999999876 7899997632 111 2456899999999999875
No 29
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.52 E-value=2e-13 Score=139.96 Aligned_cols=136 Identities=26% Similarity=0.407 Sum_probs=96.8
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC-------cceee---------------------------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA-------SGSVV--------------------------- 150 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~-------~~~~~--------------------------- 150 (352)
.++||||||+|.||++||+.|++. |++|+||||....++. .....
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~-G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~~ 85 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARER-GLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNWR 85 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHC-CCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcHH
Confidence 478999999999999999999999 9999999998765432 11000
Q ss_pred --------cchHHHHHHHcCCccccCCC--e----------EEEec-----hHHHHHHHHHHHHcCC-------C-----
Q 039605 151 --------RKPAHLFLDELGIDYDEQDN--Y----------VVIKH-----AALFTSTIMSKLLARP-------N----- 193 (352)
Q Consensus 151 --------~~~~~~~l~~~Gi~~~~~~~--~----------~~~~~-----~~~~~~~L~~~~~~~~-------g----- 193 (352)
....++||.++|++|+...+ + ....+ ...+...|.+.+.+.. |
T Consensus 86 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~ 165 (626)
T PRK07803 86 MAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEAR 165 (626)
T ss_pred HHHHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccCCcCc
Confidence 01234788899999975311 1 11111 3456667777665432 5
Q ss_pred cEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 194 VKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 194 v~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
+++++++.+++|+.+++++.|+...+ ..+ ++...|.|+.||+|||+++
T Consensus 166 v~i~~~~~v~~L~~~~g~v~Gv~~~~------~~~---g~~~~i~Ak~VVlATGG~~ 213 (626)
T PRK07803 166 IKVFAECTITELLKDGGRIAGAFGYW------RES---GRFVLFEAPAVVLATGGIG 213 (626)
T ss_pred eEEEeCCEEEEEEEECCEEEEEEEEE------CCC---CeEEEEEcCeEEECCCccc
Confidence 99999999999999889999987632 111 2346799999999999853
No 30
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.51 E-value=2.5e-13 Score=137.92 Aligned_cols=137 Identities=24% Similarity=0.342 Sum_probs=100.0
Q ss_pred CCccEEEECCcHHHHHHHHHHhcC-CCCcEEEEeccCCCCCCc-------cee--------------------e------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKN-PNVQVAIIEQSVSPGGAS-------GSV--------------------V------ 150 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~-~G~kV~viEk~~~~GG~~-------~~~--------------------~------ 150 (352)
.++||||||+|.|||.||+.+++. +|++|+||||....+++. ... +
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv 81 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVV 81 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHH
Confidence 368999999999999999999975 258999999987655431 000 0
Q ss_pred ------cchHHHHHHHcCCccccCC--CeEE----------Ee-----chHHHHHHHHHHHHcCCCcEEEccceeEEEEE
Q 039605 151 ------RKPAHLFLDELGIDYDEQD--NYVV----------IK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV 207 (352)
Q Consensus 151 ------~~~~~~~l~~~Gi~~~~~~--~~~~----------~~-----~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~ 207 (352)
....++||+++|++|+... .+.. .. ....+.+.|.+++.+..+++++.++.+++|+.
T Consensus 82 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~ 161 (580)
T TIGR01176 82 EYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLV 161 (580)
T ss_pred HHHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEe
Confidence 0124588999999997531 1111 11 23456778888777667899999999999999
Q ss_pred eCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 208 KGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 208 ~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
++++|.|+...+ ..+ ++...+.|+.||+|||+++
T Consensus 162 ~~g~v~Gv~~~~------~~~---g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 162 DDGRVCGLVAIE------MAE---GRLVTILADAVVLATGGAG 195 (580)
T ss_pred eCCEEEEEEEEE------cCC---CcEEEEecCEEEEcCCCCc
Confidence 989999987632 111 2456899999999999865
No 31
>PLN02815 L-aspartate oxidase
Probab=99.51 E-value=1.4e-13 Score=139.87 Aligned_cols=136 Identities=22% Similarity=0.275 Sum_probs=98.4
Q ss_pred CCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCc-------ceee--------------------c-----
Q 039605 104 HADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGAS-------GSVV--------------------R----- 151 (352)
Q Consensus 104 ~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~-------~~~~--------------------~----- 151 (352)
+.++||||||+|.|||+||+.+++. | +|+||||....||+. .... .
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~-G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv 104 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEY-G-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETV 104 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhC-C-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHH
Confidence 3478999999999999999999999 9 999999988766531 1000 0
Q ss_pred -------chHHHHHHHcCCccccCC--CeE----------EEe-----chHHHHHHHHHHHHcCCCcEEEccceeEEEEE
Q 039605 152 -------KPAHLFLDELGIDYDEQD--NYV----------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV 207 (352)
Q Consensus 152 -------~~~~~~l~~~Gi~~~~~~--~~~----------~~~-----~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~ 207 (352)
...++||.++|++|+... .+. ... ....+...|.+.+.+..|+++++++.+++|+.
T Consensus 105 ~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~ 184 (594)
T PLN02815 105 RVVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLLT 184 (594)
T ss_pred HHHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeee
Confidence 124589999999997431 111 111 23456678888877667999999999999998
Q ss_pred eC-C---EEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 208 KG-N---RVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 208 ~~-g---~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
++ + +|.|+.+.+ ..+ ++...|.|+.||+|||+++
T Consensus 185 ~~~g~~~~v~Gv~~~~------~~~---g~~~~i~AkaVILATGG~g 222 (594)
T PLN02815 185 SQDGGSIVCHGADVLD------TRT---GEVVRFISKVTLLASGGAG 222 (594)
T ss_pred ecCCCccEEEEEEEEE------cCC---CeEEEEEeceEEEcCCcce
Confidence 63 4 388987632 111 2456889999999999865
No 32
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.50 E-value=3.7e-13 Score=133.70 Aligned_cols=133 Identities=18% Similarity=0.237 Sum_probs=94.9
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCC--CCCCcce---e--------------e----------------
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVS--PGGASGS---V--------------V---------------- 150 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~--~GG~~~~---~--------------~---------------- 150 (352)
++||||||+|++|++||+.|+++ |++|+||||.+. .||.... . .
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~-G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREA-GASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR 82 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence 68999999999999999999999 999999999863 4443100 0 0
Q ss_pred ------------cchHHHHHHHcCCccccCC--CeE-------EEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeC
Q 039605 151 ------------RKPAHLFLDELGIDYDEQD--NYV-------VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG 209 (352)
Q Consensus 151 ------------~~~~~~~l~~~Gi~~~~~~--~~~-------~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~ 209 (352)
.....+|+.++|+++.... .+. .......+...|.+.+. +.|+++++++++++|+.++
T Consensus 83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~-~~gv~i~~~t~v~~l~~~~ 161 (466)
T PRK08274 83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAE-RLGVEIRYDAPVTALELDD 161 (466)
T ss_pred CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHH-HCCCEEEcCCEEEEEEecC
Confidence 0012467888888775421 111 11113456677777665 6799999999999999988
Q ss_pred CEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 210 NRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 210 g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
++|+++.+.. .+++...++++.||+|+|++.
T Consensus 162 g~v~gv~~~~----------~~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 162 GRFVGARAGS----------AAGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred CeEEEEEEEc----------cCCceEEEECCEEEECCCCCC
Confidence 8999987732 011346799999999999764
No 33
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.50 E-value=2.7e-13 Score=135.98 Aligned_cols=134 Identities=23% Similarity=0.364 Sum_probs=96.5
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcce-------e-----------------e----------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGS-------V-----------------V---------- 150 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~-------~-----------------~---------- 150 (352)
.++||||||+|.+|++||+.+++. |++|+||||.+..||.... . +
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~-Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~ 138 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDA-GMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGT 138 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCC
Confidence 378999999999999999999999 9999999999877764100 0 0
Q ss_pred ------------cchHHHHHHHcCCccccC---CC------eEEE---echHHHHHHHHHHHHcCCCcEEEccceeEEEE
Q 039605 151 ------------RKPAHLFLDELGIDYDEQ---DN------YVVI---KHAALFTSTIMSKLLARPNVKLFNAVAAEDLI 206 (352)
Q Consensus 151 ------------~~~~~~~l~~~Gi~~~~~---~~------~~~~---~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~ 206 (352)
....++||+++|++|... +. +... .....+...|.+.+. +.|+++++++.+++|+
T Consensus 139 ~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~-~~gv~i~~~t~v~~l~ 217 (506)
T PRK06481 139 NDKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQ-ERKIPLFVNADVTKIT 217 (506)
T ss_pred CCHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHH-HcCCeEEeCCeeEEEE
Confidence 011347888888877531 00 0000 012345667777665 5699999999999999
Q ss_pred EeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 207 VKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 207 ~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
.++++|+|+.+... + ++..++.++.||+|+|++.
T Consensus 218 ~~~g~V~Gv~~~~~-------~---g~~~~i~a~~VVlAtGG~~ 251 (506)
T PRK06481 218 EKDGKVTGVKVKIN-------G---KETKTISSKAVVVTTGGFG 251 (506)
T ss_pred ecCCEEEEEEEEeC-------C---CeEEEEecCeEEEeCCCcc
Confidence 88889999877421 1 1245799999999999875
No 34
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.50 E-value=2.7e-13 Score=136.80 Aligned_cols=138 Identities=24% Similarity=0.390 Sum_probs=99.3
Q ss_pred cCCCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcc-------eee--------------------c---
Q 039605 102 ITHADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASG-------SVV--------------------R--- 151 (352)
Q Consensus 102 ~~~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~-------~~~--------------------~--- 151 (352)
++..++||||||+|.||++||+.|++. ++|+||||....+|+.. ... .
T Consensus 4 ~~~~~~DVlVVG~G~AGl~AA~~aa~~--~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~ 81 (536)
T PRK09077 4 SPEHQCDVLIIGSGAAGLSLALRLAEH--RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDED 81 (536)
T ss_pred CccccCCEEEECchHHHHHHHHHHHHC--CCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHH
Confidence 345679999999999999999999874 79999999876555310 000 0
Q ss_pred ---------chHHHHHHHcCCccccCC------CeEE----------Ee-----chHHHHHHHHHHHHcCCCcEEEccce
Q 039605 152 ---------KPAHLFLDELGIDYDEQD------NYVV----------IK-----HAALFTSTIMSKLLARPNVKLFNAVA 201 (352)
Q Consensus 152 ---------~~~~~~l~~~Gi~~~~~~------~~~~----------~~-----~~~~~~~~L~~~~~~~~gv~i~~~t~ 201 (352)
...++||+++|++|+... .|.. .. ....+...|.+++.+.+|+++++++.
T Consensus 82 ~v~~~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~ 161 (536)
T PRK09077 82 AVRFIAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHN 161 (536)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEE
Confidence 123578999999997532 1211 11 12356677788787677999999999
Q ss_pred eEEEEEeC------CEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 202 AEDLIVKG------NRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 202 v~~l~~~~------g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
+++|+.++ ++|.|+...+ ..+ ++...|.++.||+|||+++
T Consensus 162 v~~Li~~~~~~~~~g~v~Gv~~~~------~~~---g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 162 AIDLITSDKLGLPGRRVVGAYVLN------RNK---ERVETIRAKFVVLATGGAS 207 (536)
T ss_pred eeeeeecccccCCCCEEEEEEEEE------CCC---CcEEEEecCeEEECCCCCC
Confidence 99999864 7899998742 111 2356799999999999865
No 35
>PRK06370 mercuric reductase; Validated
Probab=99.49 E-value=1.1e-12 Score=130.13 Aligned_cols=117 Identities=10% Similarity=0.096 Sum_probs=75.2
Q ss_pred HHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcc
Q 039605 182 STIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMK 261 (352)
Q Consensus 182 ~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~ 261 (352)
..+.+.+ ++.|+++++++.+.++..+++.+ .+.+.. .+ +..++.+|.||+|+|..+.....++. ..
T Consensus 216 ~~l~~~l-~~~GV~i~~~~~V~~i~~~~~~~-~v~~~~-------~~----~~~~i~~D~Vi~A~G~~pn~~~l~l~-~~ 281 (463)
T PRK06370 216 AAVREIL-EREGIDVRLNAECIRVERDGDGI-AVGLDC-------NG----GAPEITGSHILVAVGRVPNTDDLGLE-AA 281 (463)
T ss_pred HHHHHHH-HhCCCEEEeCCEEEEEEEcCCEE-EEEEEe-------CC----CceEEEeCEEEECcCCCcCCCCcCch-hh
Confidence 3344444 36799999999999998765543 232211 00 23579999999999976543211111 12
Q ss_pred ccccc-cccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHH
Q 039605 262 ALDMN-TAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 262 ~~~~~-~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
++..+ .+...+.+++++..|++|++||+.... . ....+..+|+.||+.|+.
T Consensus 282 g~~~~~~G~i~vd~~l~t~~~~IyAiGD~~~~~----~---~~~~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 282 GVETDARGYIKVDDQLRTTNPGIYAAGDCNGRG----A---FTHTAYNDARIVAANLLD 333 (463)
T ss_pred CceECCCCcEeECcCCcCCCCCEEEeeecCCCc----c---cHHHHHHHHHHHHHHHhC
Confidence 23332 455666688889999999999997431 2 123457789999999874
No 36
>PLN02507 glutathione reductase
Probab=99.49 E-value=1.2e-12 Score=130.93 Aligned_cols=114 Identities=12% Similarity=0.181 Sum_probs=76.0
Q ss_pred HHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcc
Q 039605 182 STIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMK 261 (352)
Q Consensus 182 ~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~ 261 (352)
..+.+.+. +.|++++.++.+.++..+++.+ .+...+ ..++.+|.||+|+|..+.....++. ..
T Consensus 248 ~~l~~~l~-~~GI~i~~~~~V~~i~~~~~~~-~v~~~~--------------g~~i~~D~vl~a~G~~pn~~~l~l~-~~ 310 (499)
T PLN02507 248 AVVARNLE-GRGINLHPRTNLTQLTKTEGGI-KVITDH--------------GEEFVADVVLFATGRAPNTKRLNLE-AV 310 (499)
T ss_pred HHHHHHHH-hCCCEEEeCCEEEEEEEeCCeE-EEEECC--------------CcEEEcCEEEEeecCCCCCCCCCch-hh
Confidence 33344443 6799999999999998765543 233321 2479999999999976554321111 12
Q ss_pred ccccc-cccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHH
Q 039605 262 ALDMN-TAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 262 ~~~~~-~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
++..+ .+...+.++++++.|++|++||+.... . ....+..+|+.+|..++.
T Consensus 311 gl~~~~~G~I~Vd~~~~Ts~p~IyAiGDv~~~~----~---l~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 311 GVELDKAGAVKVDEYSRTNIPSIWAIGDVTNRI----N---LTPVALMEGTCFAKTVFG 362 (499)
T ss_pred CcEECCCCcEecCCCCcCCCCCEEEeeEcCCCC----c---cHHHHHHHHHHHHHHHcC
Confidence 23333 355666788899999999999998532 1 234557889999998863
No 37
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.49 E-value=4.6e-13 Score=135.62 Aligned_cols=141 Identities=22% Similarity=0.284 Sum_probs=95.4
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC--CCCCCcce----------------------------------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV--SPGGASGS---------------------------------- 148 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~--~~GG~~~~---------------------------------- 148 (352)
.++||||||+|.+||+||+.+++. |++|+||||.+ ..||+...
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~-G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~ds~e~~~~d~~~~~~ 81 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADA-GKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIKDSLELALQDWLGSAG 81 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcccCHHHHHHHHHhccC
Confidence 478999999999999999999999 99999999998 55553100
Q ss_pred -----e------e-------cchHHHHHHHcCCccccCC---------------CeEEE----echHHHHHHHHHHHH--
Q 039605 149 -----V------V-------RKPAHLFLDELGIDYDEQD---------------NYVVI----KHAALFTSTIMSKLL-- 189 (352)
Q Consensus 149 -----~------~-------~~~~~~~l~~~Gi~~~~~~---------------~~~~~----~~~~~~~~~L~~~~~-- 189 (352)
. . ....++||+++|++|.... ..... .....+...|.+++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~G~~~~~~l~~~~~~~ 161 (549)
T PRK12834 82 FDRPEDHWPRQWAEAYVDFAAGEKRSWLHSLGLRFFPVVGWAERGGGDAGGHGNSVPRFHITWGTGPGVVEPFERRVREA 161 (549)
T ss_pred CCCccccchHHHHHHHHHhCCHHHHHHHHHcCCeeEecCCccccCCcccCCcccccCceecCCCCcHHHHHHHHHHHHHH
Confidence 0 0 1234578888999875310 00000 012335556655543
Q ss_pred -cCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCC--------CCCCCCeEEEeCEEEEccCCCC
Q 039605 190 -ARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDS--------QSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 190 -~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~--------~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
+..++++++++++++|+.++++|+||.+... ...+ ...++..+|.||.||+|||++.
T Consensus 162 ~~~~gv~i~~~t~~~~Li~~~g~V~Gv~~~~~----~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~ 227 (549)
T PRK12834 162 AARGLVRFRFRHRVDELVVTDGAVTGVRGTVL----EPSDAERGEASSREVVGEFELRAQAVIVTSGGIG 227 (549)
T ss_pred HHhCCceEEecCEeeEEEEeCCEEEEEEEEec----ccccccccccccccccceEEEecCEEEEeCCCcc
Confidence 2446999999999999998899999986210 0000 0001235899999999999976
No 38
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.49 E-value=3.3e-13 Score=138.75 Aligned_cols=136 Identities=18% Similarity=0.188 Sum_probs=96.5
Q ss_pred CCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC-------cceee--------c-----------------
Q 039605 104 HADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA-------SGSVV--------R----------------- 151 (352)
Q Consensus 104 ~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~-------~~~~~--------~----------------- 151 (352)
+.++||||||+|.+||.||+.+++. |++|+||||.+..+++ ....+ .
T Consensus 3 ~~~~DVlVIG~G~AGl~AAi~Aae~-G~~VivleK~~~~~s~s~~a~GGi~a~~g~~~~g~~Ds~e~~~~Dt~k~~~~~~ 81 (657)
T PRK08626 3 IIYTDALVIGAGLAGLRVAIAAAQR-GLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSDWGC 81 (657)
T ss_pred ceeccEEEECccHHHHHHHHHHHHc-CCCEEEEeCCCCCCcchHHHhhhHHhhccccccCCCCCHHHHHHHHHHhcCCCC
Confidence 3578999999999999999999999 9999999998765432 00000 0
Q ss_pred ------------chHHHHHHHcCCccccCCC-----------------------e---E-------EEe-----chHHHH
Q 039605 152 ------------KPAHLFLDELGIDYDEQDN-----------------------Y---V-------VIK-----HAALFT 181 (352)
Q Consensus 152 ------------~~~~~~l~~~Gi~~~~~~~-----------------------~---~-------~~~-----~~~~~~ 181 (352)
...++||.++|++|+.... + . ... ....+.
T Consensus 82 D~~~vr~~v~~sp~~i~~L~~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~i~~r~~GG~~~~R~~~~~d~tG~~l~ 161 (657)
T PRK08626 82 DQEVARMFVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLINARDFGGTKKWRTCYTADGTGHTML 161 (657)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCeecCCCcccccccccccccccccccccccccccccccccceeEecCCCcHHHHH
Confidence 1235788899998864310 0 0 000 122344
Q ss_pred HHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 182 STIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 182 ~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
..|.+.+. +.|+++++++.+++|+.++++|.|+.+.+ ..+ |+...|.|+.||+|||+++
T Consensus 162 ~~L~~~~~-~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~------~~~---G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 162 YAVDNEAI-KLGVPVHDRKEAIALIHDGKRCYGAVVRC------LIT---GELRAYVAKATLIATGGYG 220 (657)
T ss_pred HHHHHHHH-hCCCEEEeeEEEEEEEEECCEEEEEEEEE------cCC---CcEEEEEcCeEEECCCccc
Confidence 55555555 67999999999999999889999988742 111 2456789999999999865
No 39
>PRK07121 hypothetical protein; Validated
Probab=99.49 E-value=5.8e-13 Score=133.23 Aligned_cols=133 Identities=26% Similarity=0.386 Sum_probs=95.9
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCccee-----------e-----------------------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSV-----------V----------------------- 150 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~-----------~----------------------- 150 (352)
.++||||||+|.+|++||++|++. |++|+||||....||..... .
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~-G~~VillEK~~~~gG~s~~sgG~~~~~~g~~~q~~~g~~d~~~~~~~~~~~~~~~ 97 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAA-GARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFEDSPENMYAYLRVAVGP 97 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCCCCcccccCeEEEeCCCcHHHHhcCCCCCHHHHHHHHHHHhCC
Confidence 478999999999999999999999 99999999998766542100 0
Q ss_pred -------------cchHHHHHHHcCCccccCC--C------------eE-------------------EEe------chH
Q 039605 151 -------------RKPAHLFLDELGIDYDEQD--N------------YV-------------------VIK------HAA 178 (352)
Q Consensus 151 -------------~~~~~~~l~~~Gi~~~~~~--~------------~~-------------------~~~------~~~ 178 (352)
....++||+++|++|.... . +. ... ...
T Consensus 98 ~~d~~l~~~~~~~s~~~i~wl~~~Gv~f~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 177 (492)
T PRK07121 98 GVDEEKLRRYCEGSVEHFDWLEGLGVPFERSFFPEKTSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRVQGPGDSGGGA 177 (492)
T ss_pred CCCHHHHHHHHHccHHHHHHHHHcCcEEEeccCCCcccCCCCCcccccchhhcchhhhhccCCcccceecCCCCCCCchH
Confidence 0013468888888875310 0 00 000 133
Q ss_pred HHHHHHHHHHHcCCCcEEEccceeEEEEEeC-CEEEEEEEcccceeccCCCCCCCCCeEEEe-CEEEEccCCCC
Q 039605 179 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-NRVGGIVTNWALVSMNHDSQSCMDPNVMEA-KVVVSSCGHDG 250 (352)
Q Consensus 179 ~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~-g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A-~~VIlAtG~~~ 250 (352)
.+...|.+.+. +.|+++++++.+++|+.++ ++++|+..... ++...++| +.||+|||++.
T Consensus 178 ~~~~~L~~~~~-~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~-----------~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 178 MLMDPLAKRAA-ALGVQIRYDTRATRLIVDDDGRVVGVEARRY-----------GETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred HHHHHHHHHHH-hCCCEEEeCCEEEEEEECCCCCEEEEEEEeC-----------CcEEEEEeCCEEEECCCCcC
Confidence 45666766665 5799999999999999874 68999887421 13467999 99999999876
No 40
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.48 E-value=6.1e-13 Score=134.31 Aligned_cols=138 Identities=25% Similarity=0.326 Sum_probs=97.5
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcc-------eee---------------------------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASG-------SVV--------------------------- 150 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~-------~~~--------------------------- 150 (352)
.++||||||+|.|||.||+.+++. |++|+||||....+|+.. ...
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~-G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~ 93 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRA-GRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVR 93 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHc-CCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 478999999999999999999999 999999999887654310 000
Q ss_pred -----cchHHHHHHHcCCccccCC--CeEE----------Ee------chHHHHHHHHHHHHcCCCcEEEccceeEEEEE
Q 039605 151 -----RKPAHLFLDELGIDYDEQD--NYVV----------IK------HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV 207 (352)
Q Consensus 151 -----~~~~~~~l~~~Gi~~~~~~--~~~~----------~~------~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~ 207 (352)
....++||.++|++|+... .+.. .. ....+.+.|.+++. +.++++++++.+++|+.
T Consensus 94 ~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~-~~gV~i~~~~~v~~Li~ 172 (541)
T PRK07804 94 SLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVR-ADPLDIREHALALDLLT 172 (541)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHH-hCCCEEEECeEeeeeEE
Confidence 0123578999999987531 1111 11 13456677777765 56799999999999998
Q ss_pred eC-CEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 208 KG-NRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 208 ~~-g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
++ ++|.|+.+.+ ...+..+....+.|+.||+|||+++
T Consensus 173 ~~~g~v~Gv~~~~------~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 173 DGTGAVAGVTLHV------LGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred cCCCeEEEEEEEe------ccCCCCCcEEEEEcCeEEECCCCCC
Confidence 75 6899987641 0000001135799999999999865
No 41
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.48 E-value=4.1e-13 Score=134.14 Aligned_cols=132 Identities=28% Similarity=0.456 Sum_probs=97.6
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCc-------ceee----------------------------
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGAS-------GSVV---------------------------- 150 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~-------~~~~---------------------------- 150 (352)
++||||||+|.|||.||+.|++. |. |+||||.+..+|+. ....
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~-G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~ 79 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQ-GR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEF 79 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhC-CC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHH
Confidence 57999999999999999999999 87 99999997655431 0000
Q ss_pred ----cchHHHHHHHcCCccccCC--CeE----------EEe-----chHHHHHHHHHHHHcCCCcEEEccceeEEEEEeC
Q 039605 151 ----RKPAHLFLDELGIDYDEQD--NYV----------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG 209 (352)
Q Consensus 151 ----~~~~~~~l~~~Gi~~~~~~--~~~----------~~~-----~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~ 209 (352)
....++||+++|++|+... .+. ... ....+...|.+++.+..|+++++++.+++|+.++
T Consensus 80 ~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~ 159 (488)
T TIGR00551 80 VVSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIET 159 (488)
T ss_pred HHHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccC
Confidence 0124578999999986431 111 111 2346677888877755799999999999999888
Q ss_pred CEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 210 NRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 210 g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
+++.|+.+.+. ++...+.++.||+|||+++
T Consensus 160 g~v~Gv~~~~~-----------~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 160 GRVVGVWVWNR-----------ETVETCHADAVVLATGGAG 189 (488)
T ss_pred CEEEEEEEEEC-----------CcEEEEEcCEEEECCCccc
Confidence 88998877431 1235799999999999976
No 42
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.1e-13 Score=125.04 Aligned_cols=123 Identities=20% Similarity=0.135 Sum_probs=94.8
Q ss_pred HHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcc
Q 039605 182 STIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMK 261 (352)
Q Consensus 182 ~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~ 261 (352)
..|.+++..-+|++++.+..-+++..++++|+|+...+ .. .|+...+.-..|++-.|-. +++.|..-.
T Consensus 393 ~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~d------r~---sge~~~l~LeGvFVqIGL~---PNT~WLkg~ 460 (520)
T COG3634 393 AVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRD------RV---SGEEHHLELEGVFVQIGLL---PNTEWLKGA 460 (520)
T ss_pred HHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEe------cc---CCceeEEEeeeeEEEEecc---cChhHhhch
Confidence 56777888889999999999999999889999998754 22 2355677778899999943 344453322
Q ss_pred ccc-cccccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCC
Q 039605 262 ALD-MNTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 323 (352)
Q Consensus 262 ~~~-~~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~ 323 (352)
++ ..+||+++..+..+++||+|++||+....| +|..+. +++|.+|+..+.+||-.
T Consensus 461 -vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~y---KQIIIa---mG~GA~AaL~AFDyLIR 516 (520)
T COG3634 461 -VELNRRGEIIVDARGETNVPGVFAAGDCTTVPY---KQIIIA---MGEGAKASLSAFDYLIR 516 (520)
T ss_pred -hhcCcCccEEEecCCCcCCCceeecCcccCCcc---ceEEEE---ecCcchhhhhhhhhhee
Confidence 33 346898888888899999999999987654 664444 78899999999999854
No 43
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.48 E-value=5.8e-13 Score=135.75 Aligned_cols=136 Identities=21% Similarity=0.337 Sum_probs=96.6
Q ss_pred CCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC-------cceee---c----------------------
Q 039605 104 HADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA-------SGSVV---R---------------------- 151 (352)
Q Consensus 104 ~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~-------~~~~~---~---------------------- 151 (352)
+.++||||||+|.|||+||+.+++. |++|+||||....++. ..... .
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~-G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~ 88 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARA-GLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQD 88 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHC-CCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHH
Confidence 3578999999999999999999999 9999999997543332 11000 0
Q ss_pred ---------chHHHHHHHcCCccccCC--CeEE-----------------Ee-----chHHHHHHHHHHHHcCCCcEEEc
Q 039605 152 ---------KPAHLFLDELGIDYDEQD--NYVV-----------------IK-----HAALFTSTIMSKLLARPNVKLFN 198 (352)
Q Consensus 152 ---------~~~~~~l~~~Gi~~~~~~--~~~~-----------------~~-----~~~~~~~~L~~~~~~~~gv~i~~ 198 (352)
...++||.++|++|+... .+.. .. ....+...|++.+. +.|++++.
T Consensus 89 ~v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~-~~gi~i~~ 167 (591)
T PRK07057 89 AIEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNV-AAKTQFFV 167 (591)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHH-hcCCEEEe
Confidence 013578889999986531 1110 00 12346677777665 57999999
Q ss_pred cceeEEEEEe-CCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 199 AVAAEDLIVK-GNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 199 ~t~v~~l~~~-~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
++.+++|+.+ +++|.|+.+.+ ..+ ++...+.|+.||+|||+++
T Consensus 168 ~~~~~~Li~~~~g~v~Gv~~~~------~~~---g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 168 EWMALDLIRDADGDVLGVTALE------MET---GDVYILEAKTTLFATGGAG 211 (591)
T ss_pred CcEEEEEEEcCCCeEEEEEEEE------cCC---CeEEEEECCeEEECCCCcc
Confidence 9999999986 57899998732 111 2346789999999999865
No 44
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.47 E-value=4.1e-13 Score=135.66 Aligned_cols=132 Identities=24% Similarity=0.390 Sum_probs=96.4
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCc-------ceeec--------------------------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGAS-------GSVVR-------------------------- 151 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~-------~~~~~-------------------------- 151 (352)
.++||||||+|.||++||+.++ . |++|+||||....||+. .....
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~-G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv~ 85 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-S-HLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVR 85 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-c-CCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 4789999999999999999985 6 99999999998766541 00000
Q ss_pred ------chHHHHHHHcCCccccCCC-eE----------EEe-----chHHHHHHHHHHHHcCCCcEEEccceeEEEEEeC
Q 039605 152 ------KPAHLFLDELGIDYDEQDN-YV----------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG 209 (352)
Q Consensus 152 ------~~~~~~l~~~Gi~~~~~~~-~~----------~~~-----~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~ 209 (352)
...++||.++|++|+.... +. ... ....+...|.+.+.++.|+++++++.+++|+.++
T Consensus 86 ~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~ 165 (553)
T PRK07395 86 FLVEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWLEP 165 (553)
T ss_pred HHHHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhheecC
Confidence 1235789999999975311 10 111 1345667777777656799999999999999873
Q ss_pred --CEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCC
Q 039605 210 --NRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHD 249 (352)
Q Consensus 210 --g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~ 249 (352)
++|.|+.+..+ ++...+.|+.||+|||++
T Consensus 166 ~~g~v~Gv~~~~~-----------g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 166 ETGRCQGISLLYQ-----------GQITWLRAGAVILATGGG 196 (553)
T ss_pred CCCEEEEEEEEEC-----------CeEEEEEcCEEEEcCCCC
Confidence 78999876321 134568999999999985
No 45
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.47 E-value=5.8e-13 Score=135.44 Aligned_cols=132 Identities=29% Similarity=0.370 Sum_probs=94.8
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC-------cceee-----------------------c------
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA-------SGSVV-----------------------R------ 151 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~-------~~~~~-----------------------~------ 151 (352)
||||||+|.+|++||+.|++. |++|+||||....+++ ..... .
T Consensus 1 DVlVVG~G~AGl~AA~~aae~-G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~ 79 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKA-GLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVE 79 (566)
T ss_pred CEEEECccHHHHHHHHHHHHC-CCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHH
Confidence 899999999999999999999 9999999998765432 10000 0
Q ss_pred ------chHHHHHHHcCCccccCCC--eEE----------Ee-----chHHHHHHHHHHHHcCCCcEEEccceeEEEEEe
Q 039605 152 ------KPAHLFLDELGIDYDEQDN--YVV----------IK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK 208 (352)
Q Consensus 152 ------~~~~~~l~~~Gi~~~~~~~--~~~----------~~-----~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~ 208 (352)
...++||+++|++|+.... +.. .. ....+...|.+.+. +.|+++++++.+++|+.+
T Consensus 80 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~~~v~~L~~~ 158 (566)
T TIGR01812 80 YMCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCL-KLGVSFFNEYFALDLIHD 158 (566)
T ss_pred HHHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHH-HcCCEEEeccEEEEEEEe
Confidence 0235788999998864311 110 00 12345567777766 459999999999999998
Q ss_pred CCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 209 GNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 209 ~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
+++|.|+...+ ..+ ++...+.|+.||+|||+++
T Consensus 159 ~g~v~Gv~~~~------~~~---g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 159 DGRVRGVVAYD------LKT---GEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred CCEEEEEEEEE------CCC---CcEEEEECCeEEECCCccc
Confidence 89999987632 111 2345799999999999865
No 46
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.47 E-value=6.7e-13 Score=134.23 Aligned_cols=134 Identities=24% Similarity=0.317 Sum_probs=95.3
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCC-CCCCcc-------eee--------------------c-----
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVS-PGGASG-------SVV--------------------R----- 151 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~-~GG~~~-------~~~--------------------~----- 151 (352)
.++||||||+|.||++||+.+ +. |++|+||||... .||+.. ... .
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~-G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv 83 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ER-GKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLV 83 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hc-CCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHH
Confidence 478999999999999999999 88 999999999864 343311 000 0
Q ss_pred -------chHHHHHHHcCCccccCCC--eE----------EEe-----chHHHHHHHHHHHHcCCCcEEEccceeEEEEE
Q 039605 152 -------KPAHLFLDELGIDYDEQDN--YV----------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV 207 (352)
Q Consensus 152 -------~~~~~~l~~~Gi~~~~~~~--~~----------~~~-----~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~ 207 (352)
....+||+++|++|+.... +. ... ....+...|.+.+. +.|+++++++.+++|+.
T Consensus 84 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~t~v~~Li~ 162 (543)
T PRK06263 84 EILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLI-KERIKILEEVMAIKLIV 162 (543)
T ss_pred HHHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHh-cCCCEEEeCeEeeeeEE
Confidence 1134788999999864311 11 110 13456677777776 47999999999999998
Q ss_pred eCCE-EEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 208 KGNR-VGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 208 ~~g~-v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
++++ |+|+...+ ..+ ++...|.|+.||+|||++.
T Consensus 163 ~~~~~v~Gv~~~~------~~~---g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 163 DENREVIGAIFLD------LRN---GEIFPIYAKATILATGGAG 197 (543)
T ss_pred eCCcEEEEEEEEE------CCC---CcEEEEEcCcEEECCCCCC
Confidence 8764 99987632 111 2346899999999999864
No 47
>PRK06185 hypothetical protein; Provisional
Probab=99.47 E-value=2.3e-12 Score=125.70 Aligned_cols=136 Identities=24% Similarity=0.344 Sum_probs=96.3
Q ss_pred CCCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCC-CcceeecchHHHHHHHcCCcccc--------------
Q 039605 103 THADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGG-ASGSVVRKPAHLFLDELGIDYDE-------------- 167 (352)
Q Consensus 103 ~~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG-~~~~~~~~~~~~~l~~~Gi~~~~-------------- 167 (352)
...++||+|||||++|+++|+.|++. |++|+|||+.+.... .....+.....+.++++|+.-..
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~-G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~ 81 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARA-GVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFE 81 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEE
Confidence 34578999999999999999999999 999999999754321 12334445566677766652110
Q ss_pred -CC---------------CeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCC
Q 039605 168 -QD---------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSC 231 (352)
Q Consensus 168 -~~---------------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~ 231 (352)
.+ .+........+.+.|.+.+.+..|+++++++++.++..+++++.++.+.. .+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~-------~~--- 151 (407)
T PRK06185 82 IGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRART-------PD--- 151 (407)
T ss_pred ECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEc-------CC---
Confidence 00 01112233456677777776667999999999999999888887776532 11
Q ss_pred CCCeEEEeCEEEEccCCCC
Q 039605 232 MDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 232 g~~~~i~A~~VIlAtG~~~ 250 (352)
...+++|+.||.|+|.++
T Consensus 152 -g~~~i~a~~vI~AdG~~S 169 (407)
T PRK06185 152 -GPGEIRADLVVGADGRHS 169 (407)
T ss_pred -CcEEEEeCEEEECCCCch
Confidence 125799999999999987
No 48
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.47 E-value=1.4e-12 Score=134.59 Aligned_cols=123 Identities=15% Similarity=0.055 Sum_probs=78.4
Q ss_pred CCCcEEEccceeEEEEEe-CCEEEEEEEcccce-eccCCCCC------CCCCeEEEeCEEEEccCCCCCCCCCCCCCccc
Q 039605 191 RPNVKLFNAVAAEDLIVK-GNRVGGIVTNWALV-SMNHDSQS------CMDPNVMEAKVVVSSCGHDGPFGATGVRGMKA 262 (352)
Q Consensus 191 ~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~g~~-~~~~~~~~------~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~ 262 (352)
+.|+++++++.+.++..+ ++++.++++..... +.+ .+|. .++..++.+|.||+|.|..+.... +....+
T Consensus 518 ~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~-~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~--~~~~~g 594 (654)
T PRK12769 518 EEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPD-AQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMP--WLESHG 594 (654)
T ss_pred HcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcC-CCCCCcceeCCCceEEEECCEEEECccCCCCccc--cccccC
Confidence 569999999999999764 57888887632100 000 0110 234568999999999997654211 111122
Q ss_pred cccc-cccceeec----ccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCC
Q 039605 263 LDMN-TAEDAIVK----LTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 323 (352)
Q Consensus 263 ~~~~-~g~~~vv~----~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~ 323 (352)
+.++ .|...+.. ++.++.||+|++||+.... ..+..|+.+|++||..|.+||..
T Consensus 595 l~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~-------~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 595 VTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGA-------DLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred CcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCC-------cHHHHHHHHHHHHHHHHHHHhCc
Confidence 3333 24333322 3578999999999997421 12345688999999999999864
No 49
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.47 E-value=9.7e-13 Score=122.51 Aligned_cols=117 Identities=18% Similarity=0.158 Sum_probs=76.2
Q ss_pred HHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCccccc
Q 039605 185 MSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALD 264 (352)
Q Consensus 185 ~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~ 264 (352)
.+.+.++.|+++++++.+.++..++ ++..+...+ .. +++..++.+|.||+|+|..+.... .... +.
T Consensus 183 ~~~l~~~~gv~~~~~~~v~~i~~~~-~~~~v~~~~------~~---~g~~~~i~~D~vi~a~G~~~~~~~---l~~~-~~ 248 (300)
T TIGR01292 183 LDRLRKNPNIEFLWNSTVKEIVGDN-KVEGVKIKN------TV---TGEEEELKVDGVFIAIGHEPNTEL---LKGL-LE 248 (300)
T ss_pred HHHHHhCCCeEEEeccEEEEEEccC-cEEEEEEEe------cC---CCceEEEEccEEEEeeCCCCChHH---HHHh-he
Confidence 4444433499999999999987644 555555422 01 123478999999999996543311 1111 11
Q ss_pred cc-cccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHc
Q 039605 265 MN-TAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 321 (352)
Q Consensus 265 ~~-~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l 321 (352)
.+ .+...+.++.++..|++|++||+.... +. .+..++.+|..||..|.++|
T Consensus 249 ~~~~g~i~v~~~~~t~~~~vya~GD~~~~~---~~---~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 249 LDEGGYIVTDEGMRTSVPGVFAAGDVRDKG---YR---QAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred ecCCCcEEECCCCccCCCCEEEeecccCcc---hh---hhhhhhhhHHHHHHHHHhhC
Confidence 12 244455677788899999999998521 11 23456889999999999876
No 50
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.47 E-value=2.7e-12 Score=126.71 Aligned_cols=113 Identities=10% Similarity=0.054 Sum_probs=73.1
Q ss_pred HHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcc
Q 039605 182 STIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMK 261 (352)
Q Consensus 182 ~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~ 261 (352)
..+.+.+. +.|+++++++.+.++..+++.+. +... ..++.+|.||+|+|..+....... ...
T Consensus 203 ~~l~~~l~-~~gV~v~~~~~v~~i~~~~~~v~-v~~~---------------~g~i~~D~vl~a~G~~pn~~~l~~-~~~ 264 (441)
T PRK08010 203 DNIATILR-DQGVDIILNAHVERISHHENQVQ-VHSE---------------HAQLAVDALLIASGRQPATASLHP-ENA 264 (441)
T ss_pred HHHHHHHH-hCCCEEEeCCEEEEEEEcCCEEE-EEEc---------------CCeEEeCEEEEeecCCcCCCCcCc-hhc
Confidence 33334443 67999999999999987655432 3221 135889999999997654322111 112
Q ss_pred ccccc-cccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHH
Q 039605 262 ALDMN-TAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 262 ~~~~~-~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
++..+ .+...+.+++++..|++|++||+.... + ....++.+|+.+++.++.
T Consensus 265 gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~-----~--~~~~a~~~~~~~~~~~~g 316 (441)
T PRK08010 265 GIAVNERGAIVVDKYLHTTADNIWAMGDVTGGL-----Q--FTYISLDDYRIVRDELLG 316 (441)
T ss_pred CcEECCCCcEEECCCcccCCCCEEEeeecCCCc-----c--chhHHHHHHHHHHHHHcC
Confidence 23332 466666788889999999999998532 1 122346678888888753
No 51
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.46 E-value=6.3e-13 Score=135.85 Aligned_cols=137 Identities=23% Similarity=0.360 Sum_probs=96.1
Q ss_pred CCccEEEECCcHHHHHHHHHHhcC-CCCcEEEEeccCCCCCCc--------ceee-------------------------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKN-PNVQVAIIEQSVSPGGAS--------GSVV------------------------- 150 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~-~G~kV~viEk~~~~GG~~--------~~~~------------------------- 150 (352)
.++||||||+|.|||+||+.|++. +|++|+||||....+++. +..+
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~l 89 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDL 89 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHH
Confidence 478999999999999999999985 389999999986532221 0000
Q ss_pred -------cchHHHHHHHcCCccccCC--CeEEE------echHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEE
Q 039605 151 -------RKPAHLFLDELGIDYDEQD--NYVVI------KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGI 215 (352)
Q Consensus 151 -------~~~~~~~l~~~Gi~~~~~~--~~~~~------~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv 215 (352)
....++||+++|++|+... .+... .....+...|.+.+.+..|+++++++.+.+|+.++++|+|+
T Consensus 90 v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv 169 (608)
T PRK06854 90 VYDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGA 169 (608)
T ss_pred HHHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEE
Confidence 0123578889999886431 11110 12345666677776644569999999999999888899998
Q ss_pred EEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 216 VTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 216 ~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
...+ ..+ ++...+.|+.||+|||+++
T Consensus 170 ~~~~------~~~---g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 170 VGFS------VRE---NKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred EEEE------ccC---CcEEEEECCEEEECCCchh
Confidence 6521 111 1345899999999999865
No 52
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.46 E-value=1.3e-12 Score=133.18 Aligned_cols=135 Identities=17% Similarity=0.218 Sum_probs=95.1
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC-------cceeec---------------------------
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA-------SGSVVR--------------------------- 151 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~-------~~~~~~--------------------------- 151 (352)
.+||||||+|.|||+||+.+++. |++|+||||....+|+ ......
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~-G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~ 81 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEA-GVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPP 81 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHc-CCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHHH
Confidence 56999999999999999999999 9999999998765433 111100
Q ss_pred --------chHHHHHHHcCCccccCCC--eEE----------Ee-----chHHHHHHHHHHHHcC---CCcEEEccceeE
Q 039605 152 --------KPAHLFLDELGIDYDEQDN--YVV----------IK-----HAALFTSTIMSKLLAR---PNVKLFNAVAAE 203 (352)
Q Consensus 152 --------~~~~~~l~~~Gi~~~~~~~--~~~----------~~-----~~~~~~~~L~~~~~~~---~gv~i~~~t~v~ 203 (352)
...++||+++|++|+...+ +.. .. ....+...|.+.+.+. .+++++.++.++
T Consensus 82 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~~ 161 (589)
T PRK08641 82 VKAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFL 161 (589)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEEeeEEEE
Confidence 1135889999999864321 111 10 1234556666655432 248999999999
Q ss_pred EEEEe-CCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 204 DLIVK-GNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 204 ~l~~~-~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
+|+.+ +++|.|+.+.+ ..+ ++...+.|+.||+|||+++
T Consensus 162 ~Li~~~~g~v~Gv~~~~------~~~---g~~~~i~AkaVILATGG~~ 200 (589)
T PRK08641 162 GAVLDDEGVCRGIVAQD------LFT---MEIESFPADAVIMATGGPG 200 (589)
T ss_pred EEEECCCCEEEEEEEEE------CCC---CcEEEEECCEEEECCCCCc
Confidence 99985 68999998743 111 1345789999999999976
No 53
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.46 E-value=1.2e-12 Score=120.21 Aligned_cols=129 Identities=22% Similarity=0.291 Sum_probs=85.5
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCccee------------ecchHHHHHHHcCCccccCCCeE
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSV------------VRKPAHLFLDELGIDYDEQDNYV 172 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~------------~~~~~~~~l~~~Gi~~~~~~~~~ 172 (352)
.+||++|||||..|+++|+++++. |.||.|+|.....||++-.. ......+...++|++......+.
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~-GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fd 97 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASH-GAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFD 97 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhc-CceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCc
Confidence 489999999999999999999999 99999999887788873221 11223344567888775444333
Q ss_pred E--Eech-HHH---HHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEcc
Q 039605 173 V--IKHA-ALF---TSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSC 246 (352)
Q Consensus 173 ~--~~~~-~~~---~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAt 246 (352)
+ +.+. ..+ .+.++++...+.+++++.+. +-...++.++++..++ ....++++++++|+
T Consensus 98 W~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~-------------a~f~~~~~v~V~~~d~---~~~~Ytak~iLIAt 161 (478)
T KOG0405|consen 98 WKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGR-------------ARFVSPGEVEVEVNDG---TKIVYTAKHILIAT 161 (478)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhccccceeEEeee-------------EEEcCCCceEEEecCC---eeEEEecceEEEEe
Confidence 2 1221 222 35677777777788888763 1112222223333232 34569999999999
Q ss_pred CCCC
Q 039605 247 GHDG 250 (352)
Q Consensus 247 G~~~ 250 (352)
|+.+
T Consensus 162 Gg~p 165 (478)
T KOG0405|consen 162 GGRP 165 (478)
T ss_pred CCcc
Confidence 9875
No 54
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.45 E-value=2.3e-12 Score=125.06 Aligned_cols=129 Identities=22% Similarity=0.313 Sum_probs=101.3
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEecc--CCCCCCcceeecchHHHHHHHcCC-ccc-c-------------C
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQS--VSPGGASGSVVRKPAHLFLDELGI-DYD-E-------------Q 168 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~--~~~GG~~~~~~~~~~~~~l~~~Gi-~~~-~-------------~ 168 (352)
.+||+||||||+|+++|+.|++. |++|+|||+. .....+....+.....+.|+++|+ +-- . .
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~ 80 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-GLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDG 80 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecC
Confidence 46999999999999999999999 9999999997 222233667777888899999987 310 0 0
Q ss_pred C--------------CeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEc-ccceeccCCCCCCCC
Q 039605 169 D--------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTN-WALVSMNHDSQSCMD 233 (352)
Q Consensus 169 ~--------------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~-~g~~~~~~~~~~~g~ 233 (352)
+ .+....+..++.+.|.+.+.+..+++++.+++++.+..+++.+. +.+. +|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~-v~l~~dG------------- 146 (387)
T COG0654 81 GRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VTLSFDG------------- 146 (387)
T ss_pred CceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE-EEEcCCC-------------
Confidence 0 11223456678889999998778899999999999999988777 6554 32
Q ss_pred CeEEEeCEEEEccCCCC
Q 039605 234 PNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 234 ~~~i~A~~VIlAtG~~~ 250 (352)
.+++||+||.|+|.+|
T Consensus 147 -~~~~a~llVgADG~~S 162 (387)
T COG0654 147 -ETLDADLLVGADGANS 162 (387)
T ss_pred -cEEecCEEEECCCCch
Confidence 4899999999999887
No 55
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.44 E-value=3.8e-12 Score=126.65 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=81.1
Q ss_pred CCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCC----CCCCCeEEEeCEEEEccCCCCCCCCCCCCCccccccc
Q 039605 191 RPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQ----SCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDMN 266 (352)
Q Consensus 191 ~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~----~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~~ 266 (352)
+.|+++++++.+.++..+++++.++.+... .. .++ ..++..++.+|.||+|+|..+... .+....++..+
T Consensus 341 ~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~--~~--~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~--~l~~~~gl~~~ 414 (471)
T PRK12810 341 EEGVEREFNVQTKEFEGENGKVTGVKVVRT--EL--GEGDFEPVEGSEFVLPADLVLLAMGFTGPEA--GLLAQFGVELD 414 (471)
T ss_pred HcCCeEEeccCceEEEccCCEEEEEEEEEE--Ee--cCCCccccCCceEEEECCEEEECcCcCCCch--hhccccCcccC
Confidence 569999999999999877788888876421 01 010 112457899999999999654321 11112223333
Q ss_pred -cccceee-cccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCCCC
Q 039605 267 -TAEDAIV-KLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPN 325 (352)
Q Consensus 267 -~g~~~vv-~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~~~ 325 (352)
.+...+. +++.+..||+|++||+.... . .+..++.+|++||..|.++|.+..
T Consensus 415 ~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~----~---~~~~Av~~G~~AA~~i~~~L~g~~ 468 (471)
T PRK12810 415 ERGRVAAPDNAYQTSNPKVFAAGDMRRGQ----S---LVVWAIAEGRQAARAIDAYLMGST 468 (471)
T ss_pred CCCCEEeCCCcccCCCCCEEEccccCCCc----h---hHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2443333 46778899999999998521 1 234568899999999999997643
No 56
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.44 E-value=9.5e-13 Score=143.26 Aligned_cols=141 Identities=22% Similarity=0.239 Sum_probs=97.7
Q ss_pred CCCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCccee----------------------------e----
Q 039605 103 THADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSV----------------------------V---- 150 (352)
Q Consensus 103 ~~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~----------------------------~---- 150 (352)
++.++||||||+|.||++||+.+++. |++|+||||.+..||+.... .
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~-Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~~~~ 484 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASC-GAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGK 484 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHHHHhcc
Confidence 45689999999999999999999999 99999999998877651100 0
Q ss_pred ---c------------chHHHHHHHcCCccccC---C--Ce---EEEe---------chHHHHHHHHHHHHc--CCCcEE
Q 039605 151 ---R------------KPAHLFLDELGIDYDEQ---D--NY---VVIK---------HAALFTSTIMSKLLA--RPNVKL 196 (352)
Q Consensus 151 ---~------------~~~~~~l~~~Gi~~~~~---~--~~---~~~~---------~~~~~~~~L~~~~~~--~~gv~i 196 (352)
. ...++||.++|++|... + .+ .... ....+...|.+.+.+ +.|+++
T Consensus 485 ~~~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv~i 564 (1167)
T PTZ00306 485 GGHCDPGLVKTLSVKSADAISWLSSLGVPLTVLSQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVTI 564 (1167)
T ss_pred CCCCCHHHHHHHHHhhHHHHHHHHHcCCCceeeeccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCCcEE
Confidence 0 01347888899887531 0 00 0000 022344555555543 259999
Q ss_pred EccceeEEEEEeC---------CEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCC
Q 039605 197 FNAVAAEDLIVKG---------NRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 197 ~~~t~v~~l~~~~---------g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
++++.+++|+.++ ++|+|+.+.+. ...+++...|+||.||+|||++..
T Consensus 565 ~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~-------~~~~g~~~~i~AkaVILATGGf~~ 621 (1167)
T PTZ00306 565 MTETTVTSLLSESSARPDGVREIRVTGVRYKQA-------SDASGQVMDLLADAVILATGGFSN 621 (1167)
T ss_pred EECCEEEEEEecCCcccCCCccceEEEEEEEec-------ccCCCcEEEEEeceEEEecCCccc
Confidence 9999999999864 27999987531 001234578999999999999764
No 57
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.44 E-value=9.1e-13 Score=132.23 Aligned_cols=134 Identities=25% Similarity=0.380 Sum_probs=96.1
Q ss_pred CCCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCC-CCCCc-------ceee------------------------
Q 039605 103 THADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVS-PGGAS-------GSVV------------------------ 150 (352)
Q Consensus 103 ~~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~-~GG~~-------~~~~------------------------ 150 (352)
.+.++||||||+|.|||+||+.++ +.+|+||||... .||.. ....
T Consensus 6 ~~~~~DVlVIG~G~AGl~AAl~Aa---~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~~ 82 (513)
T PRK07512 6 RILTGRPVIVGGGLAGLMAALKLA---PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDPA 82 (513)
T ss_pred cCCcCCEEEECchHHHHHHHHHhC---cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCHH
Confidence 346899999999999999999995 569999999876 33321 0000
Q ss_pred --------cchHHHHHHHcCCccccCC--CeEE----------Ee------chHHHHHHHHHHHHcCCCcEEEccceeEE
Q 039605 151 --------RKPAHLFLDELGIDYDEQD--NYVV----------IK------HAALFTSTIMSKLLARPNVKLFNAVAAED 204 (352)
Q Consensus 151 --------~~~~~~~l~~~Gi~~~~~~--~~~~----------~~------~~~~~~~~L~~~~~~~~gv~i~~~t~v~~ 204 (352)
....++||.++|++|+... .+.. .. ....+...|.+.+.+..|+++++++.+++
T Consensus 83 ~v~~~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~~~~~v~~ 162 (513)
T PRK07512 83 VAALITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEARR 162 (513)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEECcChhh
Confidence 0124579999999986531 1111 11 12356677777776556999999999999
Q ss_pred EEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 205 LIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 205 l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
|+.++++|+|+.+.+. ++...+.|+.||+|||+++
T Consensus 163 Li~~~g~v~Gv~~~~~-----------~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 163 LLVDDGAVAGVLAATA-----------GGPVVLPARAVVLATGGIG 197 (513)
T ss_pred eeecCCEEEEEEEEeC-----------CeEEEEECCEEEEcCCCCc
Confidence 9988889999887431 1234799999999999964
No 58
>PRK08275 putative oxidoreductase; Provisional
Probab=99.44 E-value=1.5e-12 Score=131.95 Aligned_cols=136 Identities=24% Similarity=0.410 Sum_probs=96.6
Q ss_pred CCccEEEECCcHHHHHHHHHHhcC-CCCcEEEEeccCCCCCCc--------ceee----c--------------------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKN-PNVQVAIIEQSVSPGGAS--------GSVV----R-------------------- 151 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~-~G~kV~viEk~~~~GG~~--------~~~~----~-------------------- 151 (352)
.++||||||+|.||++||+.+++. +|++|+||||....+++. ...+ .
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 87 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK 87 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence 578999999999999999999975 268999999987633221 0000 0
Q ss_pred ---------chHHHHHHHcCCccccC--CCeEEE------------echHHHHHHHHHHHHcCCCcEEEccceeEEEEEe
Q 039605 152 ---------KPAHLFLDELGIDYDEQ--DNYVVI------------KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK 208 (352)
Q Consensus 152 ---------~~~~~~l~~~Gi~~~~~--~~~~~~------------~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~ 208 (352)
...++||+++|++|+.. +.+... .....+...|.+++. +.|+++++++.+++|+.+
T Consensus 88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~~~v~~Li~~ 166 (554)
T PRK08275 88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLK-RARVLITNRIMATRLLTD 166 (554)
T ss_pred HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHH-HCCCEEEcceEEEEEEEc
Confidence 12357888999998653 222110 012356677777775 579999999999999987
Q ss_pred -CCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 209 -GNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 209 -~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
++++.|+...+ ..+ ++...+.|+.||+|||+.+
T Consensus 167 ~~g~v~Gv~~~~------~~~---g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 167 ADGRVAGALGFD------CRT---GEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred CCCeEEEEEEEe------cCC---CcEEEEECCEEEECCCCcc
Confidence 77899987632 111 2346799999999999975
No 59
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.43 E-value=2.4e-12 Score=122.11 Aligned_cols=133 Identities=21% Similarity=0.284 Sum_probs=91.3
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC-cceeecchHHHHHHHcCCcccc----------------C
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA-SGSVVRKPAHLFLDELGIDYDE----------------Q 168 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~-~~~~~~~~~~~~l~~~Gi~~~~----------------~ 168 (352)
+|||+|||||++|+++|+.|+++ |++|+||||.+..... ....+.....+.|+++|+.-.. .
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~ 79 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA-GIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDG 79 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT-TCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEE
T ss_pred CceEEEECCCHHHHHHHHHHHhc-ccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecc
Confidence 37999999999999999999999 9999999998765322 3445556666777766642100 0
Q ss_pred ----------------------CCeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccC
Q 039605 169 ----------------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNH 226 (352)
Q Consensus 169 ----------------------~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~ 226 (352)
.......+...+.+.|.+.+. +.+++++++++++++..+++.+.......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~gv~i~~~~~v~~~~~d~~~~~~~~~~~------- 151 (356)
T PF01494_consen 80 ISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAE-ERGVDIRFGTRVVSIEQDDDGVTVVVRDG------- 151 (356)
T ss_dssp TTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHH-HHTEEEEESEEEEEEEEETTEEEEEEEET-------
T ss_pred cCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhh-hhhhhheeeeecccccccccccccccccc-------
Confidence 001112234566777777776 45799999999999999888765544321
Q ss_pred CCCCCCCCeEEEeCEEEEccCCCC
Q 039605 227 DSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 227 ~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
.+++..+++||.||.|+|.+|
T Consensus 152 ---~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 152 ---EDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp ---CTCEEEEEEESEEEE-SGTT-
T ss_pred ---cCCceeEEEEeeeecccCccc
Confidence 122446899999999999987
No 60
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.43 E-value=2.1e-12 Score=125.74 Aligned_cols=127 Identities=27% Similarity=0.347 Sum_probs=90.0
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcc--eeecchHHHHHHHcCCcccc--------------C
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASG--SVVRKPAHLFLDELGIDYDE--------------Q 168 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~--~~~~~~~~~~l~~~Gi~~~~--------------~ 168 (352)
++|||+||||||||++||+.|++. |++|+|+||+..+|.... ..+.. ..++++...+.. .
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~-G~~VlvlEk~~~~G~k~~~~~~~~~---~~l~~l~~~~~~~i~~~v~~~~~~~~~ 77 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGSEPGAKPCCGGGLSP---RALEELIPDFDEEIERKVTGARIYFPG 77 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHc-CCeEEEEecCCCCCCCccccceech---hhHHHhCCCcchhhheeeeeeEEEecC
Confidence 378999999999999999999999 999999999988875321 12221 122222221110 0
Q ss_pred C--------CeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeC
Q 039605 169 D--------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAK 240 (352)
Q Consensus 169 ~--------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~ 240 (352)
. ...+......+.+.|.+++. +.|++++.++.+.++..+++.+...+... ..+++||
T Consensus 78 ~~~~~~~~~~~~y~v~R~~fd~~La~~A~-~aGae~~~~~~~~~~~~~~~~~~~~~~~~--------------~~e~~a~ 142 (396)
T COG0644 78 EKVAIEVPVGEGYIVDRAKFDKWLAERAE-EAGAELYPGTRVTGVIREDDGVVVGVRAG--------------DDEVRAK 142 (396)
T ss_pred CceEEecCCCceEEEEhHHhhHHHHHHHH-HcCCEEEeceEEEEEEEeCCcEEEEEEcC--------------CEEEEcC
Confidence 0 11233445677777777776 67999999999999999987665444422 1689999
Q ss_pred EEEEccCCCC
Q 039605 241 VVVSSCGHDG 250 (352)
Q Consensus 241 ~VIlAtG~~~ 250 (352)
.||+|+|..+
T Consensus 143 ~vI~AdG~~s 152 (396)
T COG0644 143 VVIDADGVNS 152 (396)
T ss_pred EEEECCCcch
Confidence 9999999765
No 61
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.43 E-value=1.6e-11 Score=122.09 Aligned_cols=117 Identities=11% Similarity=0.076 Sum_probs=74.2
Q ss_pred HHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcc
Q 039605 182 STIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMK 261 (352)
Q Consensus 182 ~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~ 261 (352)
+.+.+.+. +. ++++.++.+..+..+++.+. +...++ +++..++.+|.||+|+|..+....... ...
T Consensus 219 ~~~~~~l~-~~-v~i~~~~~v~~i~~~~~~~~-v~~~~~----------~~~~~~i~~D~vi~a~G~~pn~~~l~~-~~~ 284 (471)
T PRK06467 219 KVFTKRIK-KQ-FNIMLETKVTAVEAKEDGIY-VTMEGK----------KAPAEPQRYDAVLVAVGRVPNGKLLDA-EKA 284 (471)
T ss_pred HHHHHHHh-hc-eEEEcCCEEEEEEEcCCEEE-EEEEeC----------CCcceEEEeCEEEEeecccccCCccCh-hhc
Confidence 34444444 34 89999999998876655442 333221 012357999999999997654422111 111
Q ss_pred cccc-ccccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHH
Q 039605 262 ALDM-NTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 262 ~~~~-~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
++.. +.+.+.+.+++++..|++|++||+... +. ....+..+|..||..|..
T Consensus 285 gl~~~~~G~I~Vd~~~~t~~p~VyAiGDv~~~----~~---la~~A~~eG~~aa~~i~g 336 (471)
T PRK06467 285 GVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQ----PM---LAHKGVHEGHVAAEVIAG 336 (471)
T ss_pred CceECCCCcEeeCCCcccCCCCEEEehhhcCC----cc---cHHHHHHHHHHHHHHHcC
Confidence 2333 245566678888999999999999742 12 234457789999998864
No 62
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.42 E-value=2e-12 Score=131.65 Aligned_cols=134 Identities=23% Similarity=0.346 Sum_probs=94.9
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCc-------ceee---------------------------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGAS-------GSVV--------------------------- 150 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~-------~~~~--------------------------- 150 (352)
.++||||||+|.+|++||+.|++ +++|+||||....+++. ....
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~--~~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~~ 81 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGP--RARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDA 81 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHh--CCCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHHH
Confidence 36899999999999999999986 48999999986544420 0000
Q ss_pred -------cchHHHHHHHcCCccccCC--CeE-----------------EEe-----chHHHHHHHHHHHHcCCCcEEEcc
Q 039605 151 -------RKPAHLFLDELGIDYDEQD--NYV-----------------VIK-----HAALFTSTIMSKLLARPNVKLFNA 199 (352)
Q Consensus 151 -------~~~~~~~l~~~Gi~~~~~~--~~~-----------------~~~-----~~~~~~~~L~~~~~~~~gv~i~~~ 199 (352)
....++||+++|++|+... .+. ... ....+...|.+.+. +.|++++++
T Consensus 82 v~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~-~~gv~i~~~ 160 (583)
T PRK08205 82 AEIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCV-KHGVEFFNE 160 (583)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHH-hcCCEEEeC
Confidence 0123578899999996432 111 011 12346677777665 679999999
Q ss_pred ceeEEEEEeC----CEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 200 VAAEDLIVKG----NRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 200 t~v~~l~~~~----g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
+.+++|+.++ ++|.|+...+ ..+ ++...|.|+.||+|||+++
T Consensus 161 ~~v~~Li~~~~~~~g~v~Gv~~~~------~~~---g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 161 FYVLDLLLTETPSGPVAAGVVAYE------LAT---GEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred CEEEEEEecCCccCCcEEEEEEEE------cCC---CeEEEEEeCeEEECCCCCc
Confidence 9999999876 7899997632 111 2345799999999999865
No 63
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.41 E-value=6.1e-12 Score=121.93 Aligned_cols=131 Identities=21% Similarity=0.331 Sum_probs=91.7
Q ss_pred CCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccc---------------cC
Q 039605 104 HADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYD---------------EQ 168 (352)
Q Consensus 104 ~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~---------------~~ 168 (352)
+..+||+|||||++|+++|+.|++. |++|+|||+.+.........+.....+.|+++|+.-. ..
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARA-GASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDAT 83 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-CCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCC
Confidence 4478999999999999999999999 9999999998755333233344445666666664210 00
Q ss_pred C------------------CeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCC
Q 039605 169 D------------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQS 230 (352)
Q Consensus 169 ~------------------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~ 230 (352)
+ .+.+..+...+.+.|.+.+.+..++. +++++++++..+++.+. +.+.+
T Consensus 84 g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~-v~~~~----------- 150 (388)
T PRK07494 84 GRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDEVT-VTLAD----------- 150 (388)
T ss_pred CCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEE-EEECC-----------
Confidence 0 01122344566778888877655677 77999999988777654 44432
Q ss_pred CCCCeEEEeCEEEEccCCCCC
Q 039605 231 CMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 231 ~g~~~~i~A~~VIlAtG~~~~ 251 (352)
..++++|.||.|+|.++.
T Consensus 151 ---g~~~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 151 ---GTTLSARLVVGADGRNSP 168 (388)
T ss_pred ---CCEEEEeEEEEecCCCch
Confidence 257999999999998874
No 64
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.41 E-value=2.4e-12 Score=129.12 Aligned_cols=131 Identities=25% Similarity=0.334 Sum_probs=94.4
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcc-------eeec---------------------------
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASG-------SVVR--------------------------- 151 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~-------~~~~--------------------------- 151 (352)
++||||||+|.||+.||+.++ . |++|+||||.+..+|+.. ....
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~-~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~ 80 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELC-H-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRY 80 (510)
T ss_pred ccCEEEECccHHHHHHHHHhh-c-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHH
Confidence 679999999999999999996 4 899999999987655411 0000
Q ss_pred -----chHHHHHHHcCCccccC--CCeE----------EEec------hHHHHHHHHHHHHcCCCcEEEccceeEEEEEe
Q 039605 152 -----KPAHLFLDELGIDYDEQ--DNYV----------VIKH------AALFTSTIMSKLLARPNVKLFNAVAAEDLIVK 208 (352)
Q Consensus 152 -----~~~~~~l~~~Gi~~~~~--~~~~----------~~~~------~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~ 208 (352)
...++||.++|++|+.. +.+. ...+ ...+.+.|.+.+. .|+++++++.+++|+.+
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~--~gV~i~~~~~v~~Li~~ 158 (510)
T PRK08071 81 LVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV--PHVTVVEQEMVIDLIIE 158 (510)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh--cCCEEEECeEhhheeec
Confidence 12347888999999743 1111 1111 2345566666653 58999999999999988
Q ss_pred CCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 209 GNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 209 ~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
++++.|+.+.+. +++...+.|+.||+|||+++
T Consensus 159 ~g~v~Gv~~~~~----------~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 159 NGRCIGVLTKDS----------EGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred CCEEEEEEEEEC----------CCcEEEEEcCeEEEecCCCc
Confidence 889999887431 12345799999999999865
No 65
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.41 E-value=5.2e-12 Score=117.10 Aligned_cols=129 Identities=22% Similarity=0.293 Sum_probs=86.1
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC-cceeecchHHHHHHHcCC-------------------ccc
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA-SGSVVRKPAHLFLDELGI-------------------DYD 166 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~-~~~~~~~~~~~~l~~~Gi-------------------~~~ 166 (352)
|||+|||||++|+++|+.|++. |++|+||||....+.. +...+.....+.+...+. ...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK-GLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIP 79 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEec
Confidence 6999999999999999999999 9999999999765432 111122222222211110 000
Q ss_pred cCCCeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEcc
Q 039605 167 EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSC 246 (352)
Q Consensus 167 ~~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAt 246 (352)
....+........+.+.|.+.+. +.|++++++++++++..+++++. +.... +..++++|.||+|+
T Consensus 80 ~~~~~~~~i~r~~l~~~l~~~~~-~~gv~~~~~~~v~~~~~~~~~~~-~~~~~-------------~~~~~~a~~vv~a~ 144 (295)
T TIGR02032 80 IETELAYVIDRDAFDEQLAERAQ-EAGAELRLGTTVLDVEIHDDRVV-VIVRG-------------GEGTVTAKIVIGAD 144 (295)
T ss_pred cCCCcEEEEEHHHHHHHHHHHHH-HcCCEEEeCcEEeeEEEeCCEEE-EEEcC-------------ccEEEEeCEEEECC
Confidence 00112233455667778887776 57999999999999988877653 22211 13589999999999
Q ss_pred CCCCC
Q 039605 247 GHDGP 251 (352)
Q Consensus 247 G~~~~ 251 (352)
|.++.
T Consensus 145 G~~s~ 149 (295)
T TIGR02032 145 GSRSI 149 (295)
T ss_pred CcchH
Confidence 98763
No 66
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.41 E-value=3.6e-12 Score=128.05 Aligned_cols=133 Identities=22% Similarity=0.356 Sum_probs=92.7
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcce-----ee-----------------------------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGS-----VV----------------------------- 150 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~-----~~----------------------------- 150 (352)
.++||||||+| +|++||++|++. |++|+||||....||.... .+
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~-G~~V~vlEk~~~~Gg~t~~~~g~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 83 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAARE-GLSVALVEATDKFGGTTAYSGGGGMWFPCNPVLRRAGTDDTIEDALEYYHAVVGD 83 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHC-CCcEEEEecCCCCCcceecCCCceeccCCChhhhhcCcchHHHHHHHHHHHHhcc
Confidence 37899999999 999999999999 9999999998775543100 00
Q ss_pred --c-----------chHHHHHHH-cCCccccCC--------------C-eEEEe--------------------------
Q 039605 151 --R-----------KPAHLFLDE-LGIDYDEQD--------------N-YVVIK-------------------------- 175 (352)
Q Consensus 151 --~-----------~~~~~~l~~-~Gi~~~~~~--------------~-~~~~~-------------------------- 175 (352)
. ...++||++ .|++|.... . .....
T Consensus 84 ~~~~~l~~~~~~~s~~~i~wl~~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (513)
T PRK12837 84 RTPRDLQETYVRGGAPLIEYLEQDEHFEFAELPWPDYFGKAPKARADGQRHIVPKPLPAAALGELREQIRGPLDTERLGA 163 (513)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCCcCCCCCCcccCCcceeecCCCChHHhchhHHhccCccchhhhcc
Confidence 0 012467765 477764210 0 00000
Q ss_pred -------chHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeC-EEEEccC
Q 039605 176 -------HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAK-VVVSSCG 247 (352)
Q Consensus 176 -------~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~-~VIlAtG 247 (352)
....+...+++.+.++.|+++++++++++|+.++++|+||.... +++..+++|+ .||+|||
T Consensus 164 ~~~~~~~~G~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~-----------~g~~~~i~A~k~VIlAtG 232 (513)
T PRK12837 164 PPPDYLVGGRALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVER-----------GGERRRVRARRGVLLAAG 232 (513)
T ss_pred CCCCcccccHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEE-----------CCcEEEEEeCceEEEeCC
Confidence 01234456666666567999999999999999889999998732 1235689996 8999999
Q ss_pred CCC
Q 039605 248 HDG 250 (352)
Q Consensus 248 ~~~ 250 (352)
++.
T Consensus 233 G~~ 235 (513)
T PRK12837 233 GFE 235 (513)
T ss_pred Ccc
Confidence 974
No 67
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.41 E-value=8.5e-12 Score=121.16 Aligned_cols=131 Identities=21% Similarity=0.294 Sum_probs=91.4
Q ss_pred CCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCC----CC--cceeecchHHHHHHHcCCccccC---------
Q 039605 104 HADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPG----GA--SGSVVRKPAHLFLDELGIDYDEQ--------- 168 (352)
Q Consensus 104 ~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~G----G~--~~~~~~~~~~~~l~~~Gi~~~~~--------- 168 (352)
...+||+|||||++|+++|+.|+++ |++|+|||+.+.+. +. ....+.....+.|+++|+.-...
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~-G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 82 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADA-GLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRR 82 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-CCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccE
Confidence 3468999999999999999999999 99999999986432 11 12234445566666666521100
Q ss_pred -------C--------------CeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCC
Q 039605 169 -------D--------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHD 227 (352)
Q Consensus 169 -------~--------------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~ 227 (352)
. .+.+..+...+.+.|.+.+. +.|++++++++++++..+++.+. +.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~-~~gv~i~~~~~v~~i~~~~~~v~-v~~~~-------- 152 (392)
T PRK08773 83 MRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALH-AAGVQLHCPARVVALEQDADRVR-LRLDD-------- 152 (392)
T ss_pred EEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHH-hCCCEEEcCCeEEEEEecCCeEE-EEECC--------
Confidence 0 00112234566677777776 46999999999999988777653 44432
Q ss_pred CCCCCCCeEEEeCEEEEccCCCCC
Q 039605 228 SQSCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 228 ~~~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
..++.++.||.|+|.++.
T Consensus 153 ------g~~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 153 ------GRRLEAALAIAADGAAST 170 (392)
T ss_pred ------CCEEEeCEEEEecCCCch
Confidence 247999999999998874
No 68
>PRK10015 oxidoreductase; Provisional
Probab=99.40 E-value=4.7e-12 Score=124.42 Aligned_cols=129 Identities=22% Similarity=0.367 Sum_probs=85.8
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC--cceeecchHHHHH-HHc--------------------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA--SGSVVRKPAHLFL-DEL-------------------- 161 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~--~~~~~~~~~~~~l-~~~-------------------- 161 (352)
.+||||||||||+|++||+.|++. |++|+||||...+|.. +...+.....+.+ ..+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~-G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~ 82 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARA-GLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTE 82 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeC
Confidence 368999999999999999999999 9999999998876532 1111111111111 000
Q ss_pred ----CCccccCC-----CeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCC
Q 039605 162 ----GIDYDEQD-----NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCM 232 (352)
Q Consensus 162 ----Gi~~~~~~-----~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g 232 (352)
.+++.... ...+......+.+.|.+++. +.|++++.+++|+++..+++++.++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~-~~Gv~i~~~~~V~~i~~~~~~v~~v~~~-------------- 147 (429)
T PRK10015 83 ESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAE-QAGAQFIPGVRVDALVREGNKVTGVQAG-------------- 147 (429)
T ss_pred CCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHH-HcCCEEECCcEEEEEEEeCCEEEEEEeC--------------
Confidence 00010000 00122234556667777776 5799999999999999887887766542
Q ss_pred CCeEEEeCEEEEccCCCC
Q 039605 233 DPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 233 ~~~~i~A~~VIlAtG~~~ 250 (352)
..++.|+.||+|+|..+
T Consensus 148 -~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 148 -DDILEANVVILADGVNS 164 (429)
T ss_pred -CeEEECCEEEEccCcch
Confidence 24799999999999765
No 69
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.40 E-value=4.6e-12 Score=135.71 Aligned_cols=126 Identities=17% Similarity=0.138 Sum_probs=80.0
Q ss_pred CCCcEEEccceeEEEEEe-CCEEEEEEEcccce-eccCCC----CCCCCCeEEEeCEEEEccCCCCCCCCCCCCCccccc
Q 039605 191 RPNVKLFNAVAAEDLIVK-GNRVGGIVTNWALV-SMNHDS----QSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALD 264 (352)
Q Consensus 191 ~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~g~~-~~~~~~----~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~ 264 (352)
+.|+++++++.+.++..+ ++++.++.+..... ..+..+ ...++..++.+|.||+|.|..+..... ....++.
T Consensus 621 eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~--~~~~gl~ 698 (1006)
T PRK12775 621 EEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIIT--QSTPGLA 698 (1006)
T ss_pred hCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhh--hccCCcc
Confidence 579999999999999864 57888887642100 001000 012344679999999999976443211 1111122
Q ss_pred cc-cccceeec-----ccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCCCC
Q 039605 265 MN-TAEDAIVK-----LTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPN 325 (352)
Q Consensus 265 ~~-~g~~~vv~-----~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~~~ 325 (352)
.+ .+.+.+.+ ...++.||+|++||++... .++..++.+|++||..|.+||.++.
T Consensus 699 l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~-------~~vv~Ai~~Gr~AA~~I~~~L~~~~ 758 (1006)
T PRK12775 699 LNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGG-------ATVILAMGAGRRAARSIATYLRLGK 758 (1006)
T ss_pred cCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCc-------cHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 22 23333332 4678999999999997421 1344568999999999999997664
No 70
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.40 E-value=3.5e-12 Score=125.38 Aligned_cols=129 Identities=22% Similarity=0.367 Sum_probs=85.7
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC--cceeecchHHH-HHHHc----CC--------------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA--SGSVVRKPAHL-FLDEL----GI-------------- 163 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~--~~~~~~~~~~~-~l~~~----Gi-------------- 163 (352)
.+|||+||||||+|++||+.|+++ |++|+||||...+|.. +...+.....+ ++.++ .+
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~-G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLARE-GAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTE 82 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhC-CCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcC
Confidence 369999999999999999999999 9999999999876632 11111111111 11100 00
Q ss_pred ------cccc-----CCCeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCC
Q 039605 164 ------DYDE-----QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCM 232 (352)
Q Consensus 164 ------~~~~-----~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g 232 (352)
.+.. .....+......+.+.|.+.+. +.|++++.+++|+++..+++++.++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~-~~Gv~i~~~~~V~~i~~~~g~v~~v~~~-------------- 147 (428)
T PRK10157 83 KSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAE-EAGAQLITGIRVDNLVQRDGKVVGVEAD-------------- 147 (428)
T ss_pred CCceeeccccccccCCCCCceeeEHHHHHHHHHHHHH-HCCCEEECCCEEEEEEEeCCEEEEEEcC--------------
Confidence 0000 0001122334566677777776 5799999999999999888877665431
Q ss_pred CCeEEEeCEEEEccCCCC
Q 039605 233 DPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 233 ~~~~i~A~~VIlAtG~~~ 250 (352)
..++.|+.||+|+|.++
T Consensus 148 -g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 148 -GDVIEAKTVILADGVNS 164 (428)
T ss_pred -CcEEECCEEEEEeCCCH
Confidence 24799999999999865
No 71
>PRK09126 hypothetical protein; Provisional
Probab=99.40 E-value=6.9e-12 Score=121.67 Aligned_cols=130 Identities=18% Similarity=0.235 Sum_probs=90.0
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCC------CcceeecchHHHHHHHcCCccc--c----------
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGG------ASGSVVRKPAHLFLDELGIDYD--E---------- 167 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG------~~~~~~~~~~~~~l~~~Gi~~~--~---------- 167 (352)
++||+||||||+|+++|+.|+++ |++|+|+||.....- +....+.....+.|+++|+.-. .
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~ 81 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAK 81 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEE
Confidence 68999999999999999999999 999999999875321 1112233445666776665210 0
Q ss_pred ---CC-C--------------eEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCC
Q 039605 168 ---QD-N--------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQ 229 (352)
Q Consensus 168 ---~~-~--------------~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~ 229 (352)
.. . +....+...+.+.|++.+....|++++++++++++..+++.+ .+.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~-~v~~~~---------- 150 (392)
T PRK09126 82 VLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGA-QVTLAN---------- 150 (392)
T ss_pred EEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeE-EEEEcC----------
Confidence 00 0 001122344556777777666899999999999998776654 344432
Q ss_pred CCCCCeEEEeCEEEEccCCCCC
Q 039605 230 SCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 230 ~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
..++.||.||.|+|..+.
T Consensus 151 ----g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 151 ----GRRLTARLLVAADSRFSA 168 (392)
T ss_pred ----CCEEEeCEEEEeCCCCch
Confidence 257999999999998763
No 72
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.40 E-value=5.7e-12 Score=132.16 Aligned_cols=124 Identities=15% Similarity=0.121 Sum_probs=80.0
Q ss_pred CCCcEEEccceeEEEEEe-CCEEEEEEEcccceeccCCCC------CCCCCeEEEeCEEEEccCCCCCCCCCCCCCcccc
Q 039605 191 RPNVKLFNAVAAEDLIVK-GNRVGGIVTNWALVSMNHDSQ------SCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKAL 263 (352)
Q Consensus 191 ~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~g~~~~~~~~~------~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~ 263 (352)
+.|+++++++.+.++..+ ++++.++.+..-.......++ ..++..++.+|.||+|+|..+..... ....++
T Consensus 620 ~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~--~~~~gl 697 (752)
T PRK12778 620 EEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVP--SSIPGL 697 (752)
T ss_pred HcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCcccc--ccccCc
Confidence 569999999999998765 467888776321000000011 01234679999999999976543221 111123
Q ss_pred ccc-cccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCC
Q 039605 264 DMN-TAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 323 (352)
Q Consensus 264 ~~~-~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~ 323 (352)
..+ .+...+.+++.+..|++|++||++... ..+..|+.+|++||..|.+||.+
T Consensus 698 ~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~-------~~vv~Av~~G~~AA~~I~~~L~~ 751 (752)
T PRK12778 698 ELNRKGTIVVDEEMQSSIPGIYAGGDIVRGG-------ATVILAMGDGKRAAAAIDEYLSS 751 (752)
T ss_pred eECCCCCEEeCCCCCCCCCCEEEeCCccCCc-------HHHHHHHHHHHHHHHHHHHHhcc
Confidence 332 345455566788999999999997421 12345689999999999999975
No 73
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.39 E-value=1.1e-11 Score=131.76 Aligned_cols=125 Identities=14% Similarity=0.065 Sum_probs=77.9
Q ss_pred CCCcEEEccceeEEEEEeC--CEEEEEEEcccce-eccCCC----CCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcccc
Q 039605 191 RPNVKLFNAVAAEDLIVKG--NRVGGIVTNWALV-SMNHDS----QSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKAL 263 (352)
Q Consensus 191 ~~gv~i~~~t~v~~l~~~~--g~v~gv~~~~g~~-~~~~~~----~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~ 263 (352)
+.|+++++++.+.++..++ +++.++.+..-.. ..+..+ ...|+..++.||.||+|.|..+..... ....++
T Consensus 496 eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~--~~~~gl 573 (944)
T PRK12779 496 EEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMK--DAEPGL 573 (944)
T ss_pred HCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhh--hcccCc
Confidence 5699999999999998763 3677765521000 000000 012345689999999999976432110 111123
Q ss_pred ccc-cccceeec-ccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCCC
Q 039605 264 DMN-TAEDAIVK-LTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQP 324 (352)
Q Consensus 264 ~~~-~g~~~vv~-~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~~ 324 (352)
..+ .|.+.+.+ ...++.||+|++||++... .+...|+.+|++||..|.+||.-.
T Consensus 574 e~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~-------~~vv~Ai~eGr~AA~~I~~~L~~~ 629 (944)
T PRK12779 574 KTNKWGTIEVEKGSQRTSIKGVYSGGDAARGG-------STAIRAAGDGQAAAKEIVGEIPFT 629 (944)
T ss_pred eECCCCCEEECCCCCccCCCCEEEEEcCCCCh-------HHHHHHHHHHHHHHHHHHHHhccc
Confidence 332 34433333 3578899999999997421 134456899999999999999753
No 74
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.39 E-value=1e-11 Score=121.42 Aligned_cols=133 Identities=15% Similarity=0.259 Sum_probs=92.0
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCC---CcceeecchHHHHHHHcCCccc---------------c
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGG---ASGSVVRKPAHLFLDELGIDYD---------------E 167 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG---~~~~~~~~~~~~~l~~~Gi~~~---------------~ 167 (352)
++||+|||||++|+++|+.|+++ |++|+||||.+.... +....+.....+.|+++|+.-. .
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDS-GLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcC-CCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 68999999999999999999999 999999999876531 2233455556666666664210 0
Q ss_pred CC--------------CeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCC
Q 039605 168 QD--------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMD 233 (352)
Q Consensus 168 ~~--------------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~ 233 (352)
.. .+........+.+.|++++.+..+++++++++++++..+++.+. +.+.++ ++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~-v~~~~~-----------~~ 164 (415)
T PRK07364 97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAAT-VTLEIE-----------GK 164 (415)
T ss_pred CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeE-EEEccC-----------Cc
Confidence 00 00011122356677777777667899999999999987766543 444211 12
Q ss_pred CeEEEeCEEEEccCCCCC
Q 039605 234 PNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 234 ~~~i~A~~VIlAtG~~~~ 251 (352)
..+++||.||.|+|.++.
T Consensus 165 ~~~i~adlvIgADG~~S~ 182 (415)
T PRK07364 165 QQTLQSKLVVAADGARSP 182 (415)
T ss_pred ceEEeeeEEEEeCCCCch
Confidence 357999999999998874
No 75
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.39 E-value=4.2e-12 Score=117.96 Aligned_cols=101 Identities=13% Similarity=0.154 Sum_probs=66.3
Q ss_pred HHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcc
Q 039605 182 STIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMK 261 (352)
Q Consensus 182 ~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~ 261 (352)
....+++..+.|++|+.+++|.....+.+..+-+.+.+ .++ ++.++++||.+++++|..+...-.|+. ..
T Consensus 255 sk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~------ak~---~k~~tle~DvlLVsiGRrP~t~GLgle-~i 324 (506)
T KOG1335|consen 255 SKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVEN------AKT---GKKETLECDVLLVSIGRRPFTEGLGLE-KI 324 (506)
T ss_pred HHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEe------cCC---CceeEEEeeEEEEEccCcccccCCChh-hc
Confidence 34455555678999999999999998866333444432 222 357899999999999965433222222 22
Q ss_pred cccccc-ccceeecccccccCceeEecchhhh
Q 039605 262 ALDMNT-AEDAIVKLTREIVPGMIVAGMEVAE 292 (352)
Q Consensus 262 ~~~~~~-g~~~vv~~~~~~~pg~~~aG~~~~~ 292 (352)
+++.+. +...+.....+.+|.+|+.||+...
T Consensus 325 Gi~~D~r~rv~v~~~f~t~vP~i~~IGDv~~g 356 (506)
T KOG1335|consen 325 GIELDKRGRVIVNTRFQTKVPHIYAIGDVTLG 356 (506)
T ss_pred ccccccccceeccccccccCCceEEecccCCc
Confidence 344343 4433334557899999999998743
No 76
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.38 E-value=4.3e-12 Score=135.17 Aligned_cols=136 Identities=21% Similarity=0.324 Sum_probs=95.3
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCC-C-------cc-eee---c---------------------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGG-A-------SG-SVV---R--------------------- 151 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG-~-------~~-~~~---~--------------------- 151 (352)
.++||||||+|.+||.||+.+++. |++|+||||.....+ + .. ... .
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~-G~~V~lleK~~~~~sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~gl~d~~~ 90 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEH-GANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDYVAEITRANDGIVNQRT 90 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHC-CCeEEEEecccccCCCcccCCchhhhcccCCCccCHHHHHHHHHhhcCCCCCHHH
Confidence 578999999999999999999999 999999999864211 1 10 000 0
Q ss_pred --------chHHHHHHHcCCccccC--CCeEEE------------echHHHHHHHHHHHHc---CCCcEEEccceeEEEE
Q 039605 152 --------KPAHLFLDELGIDYDEQ--DNYVVI------------KHAALFTSTIMSKLLA---RPNVKLFNAVAAEDLI 206 (352)
Q Consensus 152 --------~~~~~~l~~~Gi~~~~~--~~~~~~------------~~~~~~~~~L~~~~~~---~~gv~i~~~t~v~~l~ 206 (352)
...++||+++|++|+.. +.+... .....+...|.+.+.+ ..+++++.++.+.+|+
T Consensus 91 v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~~~~~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li 170 (897)
T PRK13800 91 VYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRVHRSGSYVLPMPEGKDVKKALYRVLRQRSMRERIRIENRLMPVRVL 170 (897)
T ss_pred HHHHHHhHHHHHHHHHHcCCceeeCCCCCEeeeeeccCCCccccCCCchhHHHHHHHHHHHhhhcCCcEEEeceeeEEEE
Confidence 02357889999999754 222110 0123444555555543 2478999999999999
Q ss_pred EeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 207 VKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 207 ~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
.++++|.|+...+ ..+ |+...|.||.||+|||+++
T Consensus 171 ~~~g~v~Gv~~~~------~~~---g~~~~i~AkaVILATGG~g 205 (897)
T PRK13800 171 TEGGRAVGAAALN------TRT---GEFVTVGAKAVILATGPCG 205 (897)
T ss_pred eeCCEEEEEEEEe------cCC---CcEEEEECCEEEECCCccc
Confidence 8889999988632 112 2457899999999999864
No 77
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.38 E-value=1.3e-11 Score=119.56 Aligned_cols=130 Identities=22% Similarity=0.255 Sum_probs=92.3
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCC----CCC---cceeecchHHHHHHHcCCcccc-----------
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSP----GGA---SGSVVRKPAHLFLDELGIDYDE----------- 167 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~----GG~---~~~~~~~~~~~~l~~~Gi~~~~----------- 167 (352)
.+||+|||||++|+++|+.|++. |++|+|||+.+.. .+. ....+.....+.|+++|+.-..
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~ 81 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQ-GRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRL 81 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceE
Confidence 47999999999999999999999 9999999987521 111 2235566677888888753110
Q ss_pred -----CC-------------CeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCC
Q 039605 168 -----QD-------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQ 229 (352)
Q Consensus 168 -----~~-------------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~ 229 (352)
.. .+.+......+...|++++....+++++++++++++..+++.+. +.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~-v~~~~---------- 150 (384)
T PRK08849 82 ETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNR-VTLES---------- 150 (384)
T ss_pred EEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEE-EEECC----------
Confidence 00 00011122345566777777677899999999999988776653 54433
Q ss_pred CCCCCeEEEeCEEEEccCCCCC
Q 039605 230 SCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 230 ~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
..++++|.||.|+|.+|.
T Consensus 151 ----g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 151 ----GAEIEAKWVIGADGANSQ 168 (384)
T ss_pred ----CCEEEeeEEEEecCCCch
Confidence 258999999999999875
No 78
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.38 E-value=7e-12 Score=127.09 Aligned_cols=128 Identities=12% Similarity=0.005 Sum_probs=80.4
Q ss_pred HHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEE--EeCE----EEEccCCCCCCCCCCCC
Q 039605 185 MSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVM--EAKV----VVSSCGHDGPFGATGVR 258 (352)
Q Consensus 185 ~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i--~A~~----VIlAtG~~~~~~~~g~~ 258 (352)
.+++..+.|+++++++.+.++..+ +++..+.+.+ ..+ |+..++ .+|. ||+|+|..+.... .
T Consensus 185 ~~~~~~~~gV~i~~~~~V~~i~~~-~~v~~v~~~~------~~~---G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l---~ 251 (555)
T TIGR03143 185 AEKVKNHPKIEVKFNTELKEATGD-DGLRYAKFVN------NVT---GEITEYKAPKDAGTFGVFVFVGYAPSSEL---F 251 (555)
T ss_pred HHHHHhCCCcEEEeCCEEEEEEcC-CcEEEEEEEE------CCC---CCEEEEeccccccceEEEEEeCCCCChhH---H
Confidence 344444569999999999998753 4444443321 111 122333 3665 9999997654322 1
Q ss_pred Cccccccc-cccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCCCCCCCCcee
Q 039605 259 GMKALDMN-TAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNAMDGTYV 332 (352)
Q Consensus 259 g~~~~~~~-~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~~~~~~~~~~ 332 (352)
.. .+..+ .|.+.+.++++++.|++|++||+... ..++ +..|+.+|..||..|.+||.......+..|
T Consensus 252 ~~-~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~---~~~~---v~~A~~~G~~Aa~~i~~~l~~~~~~~~~~~ 319 (555)
T TIGR03143 252 KG-VVELDKRGYIPTNEDMETNVPGVYAAGDLRPK---ELRQ---VVTAVADGAIAATSAERYVKELKEKLGIAE 319 (555)
T ss_pred hh-hcccCCCCeEEeCCccccCCCCEEEceeccCC---Ccch---heeHHhhHHHHHHHHHHHHHhhhhhcCCCc
Confidence 11 12333 46666667888899999999998632 1122 234588999999999999977666444443
No 79
>PRK08013 oxidoreductase; Provisional
Probab=99.38 E-value=1.4e-11 Score=120.07 Aligned_cols=130 Identities=20% Similarity=0.287 Sum_probs=92.2
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCC----CC---cceeecchHHHHHHHcCCcccc-----------
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPG----GA---SGSVVRKPAHLFLDELGIDYDE----------- 167 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~G----G~---~~~~~~~~~~~~l~~~Gi~~~~----------- 167 (352)
++||+||||||+|+++|+.|++. |++|+|||+.+... .. ....+.....+.|+++|+.-..
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~ 81 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGS-GLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGM 81 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhC-CCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEE
Confidence 58999999999999999999999 99999999987532 11 2223445566777777652110
Q ss_pred -----C--CC------------eEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCC
Q 039605 168 -----Q--DN------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDS 228 (352)
Q Consensus 168 -----~--~~------------~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~ 228 (352)
. .. +....+..++.+.|.+.+.+..|++++++++++++..+++.+. +.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~-v~~~~--------- 151 (400)
T PRK08013 82 EVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAF-LTLKD--------- 151 (400)
T ss_pred EEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEE-EEEcC---------
Confidence 0 00 0112334566778888887667899999999999987766542 33322
Q ss_pred CCCCCCeEEEeCEEEEccCCCCC
Q 039605 229 QSCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 229 ~~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
..+++||.||.|+|.+|.
T Consensus 152 -----g~~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 152 -----GSMLTARLVVGADGANSW 169 (400)
T ss_pred -----CCEEEeeEEEEeCCCCcH
Confidence 257999999999998874
No 80
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.37 E-value=4.9e-12 Score=129.15 Aligned_cols=132 Identities=20% Similarity=0.244 Sum_probs=90.7
Q ss_pred EEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCC-C-------cceee------------------------------
Q 039605 109 VVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGG-A-------SGSVV------------------------------ 150 (352)
Q Consensus 109 VvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG-~-------~~~~~------------------------------ 150 (352)
|||||+|.|||+||+.+++. |++|+||||....++ . .....
T Consensus 1 VlVVG~G~AGl~AAl~Aae~-G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~~~~ds~e~~~~d~~~~g~~~~d~~lv~ 79 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAEL-GYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWRHFDDTVKGGDFRARESPVK 79 (603)
T ss_pred CEEECccHHHHHHHHHHHHc-CCCEEEEEecCCCCCccchhhhhhhhhhcccCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 68999999999999999999 999999999874332 1 00000
Q ss_pred -----cchHHHHHHHcCCccccCCC--eE----------EE-----echHHHHHHHHHHHHc---CCCcEEEccceeEEE
Q 039605 151 -----RKPAHLFLDELGIDYDEQDN--YV----------VI-----KHAALFTSTIMSKLLA---RPNVKLFNAVAAEDL 205 (352)
Q Consensus 151 -----~~~~~~~l~~~Gi~~~~~~~--~~----------~~-----~~~~~~~~~L~~~~~~---~~gv~i~~~t~v~~l 205 (352)
....++||.++|++|+.... +. .. .....+...|.+.+.+ +.|+++++++.+++|
T Consensus 80 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~L 159 (603)
T TIGR01811 80 RLAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQVSRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYEGWEMLDI 159 (603)
T ss_pred HHHHHHHHHHHHHHHcCCEEEecCCCccccccccCcccCcceecCCCChhHHHHHHHHHHHhhhccCCcEEEeCcEEEEE
Confidence 01245889999999864311 00 00 0123444555554432 358999999999999
Q ss_pred EEeC-CEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 206 IVKG-NRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 206 ~~~~-g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
+.++ ++|+|+.+.+ ..+ ++...+.||.||+|||+++
T Consensus 160 i~dd~grV~GV~~~~------~~~---g~~~~i~AkaVVLATGG~g 196 (603)
T TIGR01811 160 IVVDGNRARGIIARN------LVT---GEIETHSADAVILATGGYG 196 (603)
T ss_pred EEcCCCEEEEEEEEE------CCC---CcEEEEEcCEEEECCCCCc
Confidence 9864 6999998743 111 2346799999999999964
No 81
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.37 E-value=5.5e-12 Score=127.71 Aligned_cols=39 Identities=33% Similarity=0.597 Sum_probs=36.4
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
.++||||||+| +|++||+.+++. |++|+||||.+..||+
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~-G~~v~v~Ek~~~~GG~ 53 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHEL-GLSVLIVEKSSYVGGS 53 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHC-CCcEEEEecCCCCcCc
Confidence 47899999999 899999999999 9999999999888876
No 82
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.36 E-value=7.1e-12 Score=125.86 Aligned_cols=130 Identities=27% Similarity=0.375 Sum_probs=87.8
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC-CCCCC-cceeecc----h-----------HHHHHHHcCCcccc
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV-SPGGA-SGSVVRK----P-----------AHLFLDELGIDYDE 167 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~-~~GG~-~~~~~~~----~-----------~~~~l~~~Gi~~~~ 167 (352)
.+|||||||||+||+.||+.+++. |++|+|||+.. .+|+. ++-.... . ..++.+..++.+..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~-G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ 81 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARM-GAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRM 81 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHc-CCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceee
Confidence 369999999999999999999999 99999999973 44431 1111110 0 11222333443321
Q ss_pred C----CCeEE----EechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEe
Q 039605 168 Q----DNYVV----IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEA 239 (352)
Q Consensus 168 ~----~~~~~----~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A 239 (352)
. +.... ..+...+...+.+.+.+.+|++++. ..+.++..+++++.||.+.+| ..|.|
T Consensus 82 ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q-~~V~~Li~e~grV~GV~t~dG--------------~~I~A 146 (618)
T PRK05192 82 LNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQ-GEVEDLIVENGRVVGVVTQDG--------------LEFRA 146 (618)
T ss_pred cccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEecCCEEEEEEECCC--------------CEEEC
Confidence 1 01111 1233456667777777677999865 579999998999999988542 58999
Q ss_pred CEEEEccCCCC
Q 039605 240 KVVVSSCGHDG 250 (352)
Q Consensus 240 ~~VIlAtG~~~ 250 (352)
+.||+|||.+.
T Consensus 147 k~VIlATGTFL 157 (618)
T PRK05192 147 KAVVLTTGTFL 157 (618)
T ss_pred CEEEEeeCcch
Confidence 99999999764
No 83
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.36 E-value=8.7e-12 Score=123.87 Aligned_cols=126 Identities=20% Similarity=0.345 Sum_probs=90.9
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC------cceee---------------------c--------
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA------SGSVV---------------------R-------- 151 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~------~~~~~---------------------~-------- 151 (352)
+||||||+|.+||+||+.|++. |++|+||||....+.+ ..... .
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~-G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 80 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKK-GFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI 80 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4999999999999999999999 9999999998543211 10000 0
Q ss_pred ---chHHHHHHHcCCccccCC-----CeEEEe-----chHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEc
Q 039605 152 ---KPAHLFLDELGIDYDEQD-----NYVVIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTN 218 (352)
Q Consensus 152 ---~~~~~~l~~~Gi~~~~~~-----~~~~~~-----~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~ 218 (352)
...++||.++|++|+... .+.... ....+...|.+.+. +.|+++++. .+++++.+++++.|+...
T Consensus 81 ~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~-~v~~l~~~~g~v~Gv~~~ 158 (466)
T PRK08401 81 SKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHAR-ELGVNFIRG-FAEELAIKNGKAYGVFLD 158 (466)
T ss_pred HHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHH-hcCCEEEEe-EeEEEEeeCCEEEEEEEC
Confidence 113478899999986421 111111 23456677777775 579999876 799998888899888762
Q ss_pred ccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 219 WALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 219 ~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
...+.++.||+|||+++
T Consensus 159 ---------------g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 159 ---------------GELLKFDATVIATGGFS 175 (466)
T ss_pred ---------------CEEEEeCeEEECCCcCc
Confidence 14799999999999976
No 84
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.36 E-value=8e-12 Score=127.20 Aligned_cols=132 Identities=19% Similarity=0.323 Sum_probs=91.1
Q ss_pred cEEEECCcHHHHHHHHHHh----cCCCCcEEEEeccCCCCCC--------cceeec------------------------
Q 039605 108 DVVVVGAGSAGLSCAYEIS----KNPNVQVAIIEQSVSPGGA--------SGSVVR------------------------ 151 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la----~~~G~kV~viEk~~~~GG~--------~~~~~~------------------------ 151 (352)
||||||+|.|||.||+.++ +. |++|+||||....+.+ .+..++
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~-G~~VilieK~~~~~s~s~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d 79 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKK-GLKIVLVEKANLERSGAVAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVR 79 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhC-CCeEEEEEccCCCCCCccccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCc
Confidence 8999999999999999998 67 9999999997643211 110000
Q ss_pred -----------chHHHHHHHcCCccccC---CCeEEE------echHHHHHHHHHHHHcCCCcEEEccceeEEEEEeC--
Q 039605 152 -----------KPAHLFLDELGIDYDEQ---DNYVVI------KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-- 209 (352)
Q Consensus 152 -----------~~~~~~l~~~Gi~~~~~---~~~~~~------~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~-- 209 (352)
...++||.++|++|+.. +.+... .....+.+.+...+. +.+++++.++.+++|+.++
T Consensus 80 ~~lV~~lv~~s~~~i~~L~~~Gv~F~~~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~-~~~~~i~~~~~v~~Ll~d~~~ 158 (614)
T TIGR02061 80 EDLIFDMARHVDDSVHLFEEWGLPLWIKPEDGKYVREGRWQIMIHGESYKPIVAEAAK-NALGDIFERIFIVKLLLDKNT 158 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceecCCCCccccCCCcccCcCchhHHHHHHHHHH-hCCCeEEcccEEEEEEecCCC
Confidence 12458889999999643 111110 112344444444444 4568999999999999865
Q ss_pred -CEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 210 -NRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 210 -g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
++|+|+...+ ..+ ++...+.|+.||+|||+++
T Consensus 159 ~GrV~Gv~~~~------~~~---g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 159 PNRIAGAVGFN------VRA---NEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred CCeEEEEEEEE------eCC---CcEEEEECCEEEECCCccc
Confidence 7999998732 112 2456799999999999976
No 85
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.36 E-value=9.3e-12 Score=126.13 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeC-EEEEccCCCCC
Q 039605 181 TSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAK-VVVSSCGHDGP 251 (352)
Q Consensus 181 ~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~-~VIlAtG~~~~ 251 (352)
...|.+.+. +.|+++++++.+++|+.++++|+||..... ++...+.|+ .||+|||++..
T Consensus 211 ~~~l~~~~~-~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~-----------g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 211 IGRMLEAAL-AAGVPLWTNTPLTELIVEDGRVVGVVVVRD-----------GREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHHHHHHH-hCCCEEEeCCEEEEEEEeCCEEEEEEEEEC-----------CeEEEEEecceEEEecCCccC
Confidence 344555554 679999999999999999999999987421 234678995 79999998763
No 86
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.36 E-value=2.1e-11 Score=118.02 Aligned_cols=129 Identities=25% Similarity=0.347 Sum_probs=90.7
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCC---C---cceeecchHHHHHHHcCCcccc------------
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGG---A---SGSVVRKPAHLFLDELGIDYDE------------ 167 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG---~---~~~~~~~~~~~~l~~~Gi~~~~------------ 167 (352)
.+||+|||||++|+++|+.|++. |++|+||||...... + ....+.....+.|+.+|+.-..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQS-GLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMR 83 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEE
Confidence 67999999999999999999999 999999999876532 1 1133444556667666652110
Q ss_pred ----C-------------CCeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCC
Q 039605 168 ----Q-------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQS 230 (352)
Q Consensus 168 ----~-------------~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~ 230 (352)
. ....+..+..++.+.|.+.+.+..+++++ +++++++..+++.+. +.+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~-v~~~~----------- 150 (388)
T PRK07608 84 VFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAAT-LTLAD----------- 150 (388)
T ss_pred EEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEE-EEECC-----------
Confidence 0 00112234567778888888755459999 889999887766553 54432
Q ss_pred CCCCeEEEeCEEEEccCCCCC
Q 039605 231 CMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 231 ~g~~~~i~A~~VIlAtG~~~~ 251 (352)
..+++||.||.|+|.++.
T Consensus 151 ---g~~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 151 ---GQVLRADLVVGADGAHSW 168 (388)
T ss_pred ---CCEEEeeEEEEeCCCCch
Confidence 247999999999998874
No 87
>PRK06126 hypothetical protein; Provisional
Probab=99.36 E-value=1.6e-11 Score=124.32 Aligned_cols=137 Identities=18% Similarity=0.231 Sum_probs=90.4
Q ss_pred CCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC-cceeecchHHHHHHHcCC---------cccc------
Q 039605 104 HADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA-SGSVVRKPAHLFLDELGI---------DYDE------ 167 (352)
Q Consensus 104 ~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~-~~~~~~~~~~~~l~~~Gi---------~~~~------ 167 (352)
+.++||+|||||++|+++|+.|+++ |++|+||||.+..... ....+.....+.|+++|+ +...
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~-G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~ 83 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRR-GVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAY 83 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceE
Confidence 4578999999999999999999999 9999999998643321 223333344444444443 1100
Q ss_pred ----CCC-e---------------------------EEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEE
Q 039605 168 ----QDN-Y---------------------------VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGI 215 (352)
Q Consensus 168 ----~~~-~---------------------------~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv 215 (352)
.+. + ........+...|++.+.+..+++++++++++++..+++.+. +
T Consensus 84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~-v 162 (545)
T PRK06126 84 FTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVT-A 162 (545)
T ss_pred EecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEE-E
Confidence 000 0 001122234566677776667999999999999998877665 3
Q ss_pred EEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCC
Q 039605 216 VTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 216 ~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
.+.+ ..+ ++..++++|+||.|+|.++.
T Consensus 163 ~~~~------~~~---g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 163 TVED------LDG---GESLTIRADYLVGCDGARSA 189 (545)
T ss_pred EEEE------CCC---CcEEEEEEEEEEecCCcchH
Confidence 3321 111 23468999999999999874
No 88
>PRK13984 putative oxidoreductase; Provisional
Probab=99.35 E-value=2e-11 Score=125.13 Aligned_cols=124 Identities=14% Similarity=0.139 Sum_probs=80.6
Q ss_pred CCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCC------CCCCCeEEEeCEEEEccCCCCCCCCCCCCCccccc
Q 039605 191 RPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQ------SCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALD 264 (352)
Q Consensus 191 ~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~------~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~ 264 (352)
+.|+++++++.+.++..+++++.++.+.......+ .++ ..++..++.+|.||+|.|..+............+.
T Consensus 474 ~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~-~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~ 552 (604)
T PRK13984 474 EEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFD-EEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLE 552 (604)
T ss_pred HcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccC-CCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCcc
Confidence 35899999988888877778888887642110001 011 01234689999999999976532211000001122
Q ss_pred cccccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCC
Q 039605 265 MNTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 323 (352)
Q Consensus 265 ~~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~ 323 (352)
.+.+...+.++.++..|++|++||+.... ....++.+|++||..|.+||.+
T Consensus 553 ~~~G~i~vd~~~~Ts~~gVfAaGD~~~~~--------~~v~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 553 FVRGRILTNEYGQTSIPWLFAGGDIVHGP--------DIIHGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred ccCCeEEeCCCCccCCCCEEEecCcCCch--------HHHHHHHHHHHHHHHHHHHhcc
Confidence 34455555677889999999999997432 1234588999999999999965
No 89
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.35 E-value=2.5e-11 Score=118.48 Aligned_cols=130 Identities=18% Similarity=0.294 Sum_probs=92.3
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEecc-CCC--C---CCcceeecchHHHHHHHcCCccccC-----------
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQS-VSP--G---GASGSVVRKPAHLFLDELGIDYDEQ----------- 168 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~-~~~--G---G~~~~~~~~~~~~~l~~~Gi~~~~~----------- 168 (352)
.+||+|||||++|+++|+.|++. |++|+|||+. +.. + +.....+.....+.|+++|+.-...
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~ 82 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKES-DLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAME 82 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhC-CCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEE
Confidence 57999999999999999999999 9999999996 221 1 1223445556677787777631100
Q ss_pred ---C----------------CeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCC
Q 039605 169 ---D----------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQ 229 (352)
Q Consensus 169 ---~----------------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~ 229 (352)
. .+....+...+.+.|++.+.+..|++++++++++++..+++.+ .+.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~-~v~~~~---------- 151 (405)
T PRK08850 83 VWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEA-WLTLDN---------- 151 (405)
T ss_pred EEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeE-EEEECC----------
Confidence 0 0011223445667788888766789999999999998776654 344432
Q ss_pred CCCCCeEEEeCEEEEccCCCCC
Q 039605 230 SCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 230 ~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
..+++||.||.|+|..+.
T Consensus 152 ----g~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 152 ----GQALTAKLVVGADGANSW 169 (405)
T ss_pred ----CCEEEeCEEEEeCCCCCh
Confidence 257999999999998774
No 90
>PLN02985 squalene monooxygenase
Probab=99.35 E-value=2.3e-11 Score=122.02 Aligned_cols=137 Identities=23% Similarity=0.335 Sum_probs=95.3
Q ss_pred CCCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCC-CCCcceeecchHHHHHHHcCCcccc--------------
Q 039605 103 THADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSP-GGASGSVVRKPAHLFLDELGIDYDE-------------- 167 (352)
Q Consensus 103 ~~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~-GG~~~~~~~~~~~~~l~~~Gi~~~~-------------- 167 (352)
...++||+|||||++|+++|+.|++. |++|+||||.... .......+.....+.|+++|+.-..
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~-G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~ 118 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKD-GRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVY 118 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHc-CCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEE
Confidence 34578999999999999999999999 9999999997532 1123334444556666666542110
Q ss_pred -CCCe-----------------EEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCC
Q 039605 168 -QDNY-----------------VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQ 229 (352)
Q Consensus 168 -~~~~-----------------~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~ 229 (352)
.+.. ....+..++.+.|++++.+..|++++.+ ++++++.+++.+.++.+..
T Consensus 119 ~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~---------- 187 (514)
T PLN02985 119 KDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKN---------- 187 (514)
T ss_pred ECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEc----------
Confidence 0000 0123455777888888877778999876 6888887777777777632
Q ss_pred CCCCCeEEEeCEEEEccCCCCC
Q 039605 230 SCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 230 ~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
.+|+..++.||.||.|+|.+|.
T Consensus 188 ~dG~~~~~~AdLVVgADG~~S~ 209 (514)
T PLN02985 188 SAGEETTALAPLTVVCDGCYSN 209 (514)
T ss_pred CCCCEEEEECCEEEECCCCchH
Confidence 1123457889999999999874
No 91
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.35 E-value=3.9e-11 Score=123.59 Aligned_cols=124 Identities=11% Similarity=0.045 Sum_probs=77.1
Q ss_pred CCCcEEEccceeEEEEEe-CCEEEEEEEcccce-eccCCCC------CCCCCeEEEeCEEEEccCCCCCCCCCCCCCccc
Q 039605 191 RPNVKLFNAVAAEDLIVK-GNRVGGIVTNWALV-SMNHDSQ------SCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKA 262 (352)
Q Consensus 191 ~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~g~~-~~~~~~~------~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~ 262 (352)
+.|++|++++.+.++..+ ++++.++.+..... +.+ .++ ..++..++.+|.||+|.|..+.... +....+
T Consensus 501 ~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~-~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~--~~~~~g 577 (639)
T PRK12809 501 EEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPG-PDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMP--WLQGSG 577 (639)
T ss_pred HcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcC-CCCCccceecCCceEEEECCEEEECcCCCCCccc--cccccC
Confidence 569999999999999865 56788775421000 000 001 0234568999999999996543211 111122
Q ss_pred cccc-cccceeec----ccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCCC
Q 039605 263 LDMN-TAEDAIVK----LTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQP 324 (352)
Q Consensus 263 ~~~~-~g~~~vv~----~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~~ 324 (352)
+..+ .+...+.+ ..++..||+|++||+.... ..+..|+.+|++||..|.+||...
T Consensus 578 l~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~-------~~vv~Ai~~Gr~AA~~i~~~l~~~ 637 (639)
T PRK12809 578 IKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGA-------DLVVTAMAAGRQAARDMLTLFDTK 637 (639)
T ss_pred cccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCc-------hHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3222 23322222 2567899999999997431 133456889999999999999653
No 92
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.35 E-value=2.6e-11 Score=117.62 Aligned_cols=131 Identities=19% Similarity=0.263 Sum_probs=91.2
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCC---C-C---cceeecchHHHHHHHcCCccc-----------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPG---G-A---SGSVVRKPAHLFLDELGIDYD----------- 166 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~G---G-~---~~~~~~~~~~~~l~~~Gi~~~----------- 166 (352)
.+|||+|||||++|+++|+.|++. |++|+|||+.+... + . ....+.....+.|+.+|+.-.
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 82 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQH-GFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRR 82 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcC-CCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccce
Confidence 468999999999999999999999 99999999975321 1 1 112344445566666664210
Q ss_pred -----cCC-------------CeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCC
Q 039605 167 -----EQD-------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDS 228 (352)
Q Consensus 167 -----~~~-------------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~ 228 (352)
+.. .+.+..+...+.+.|.+++.+.+|++++++++++++..+++.+ .+.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~--------- 152 (391)
T PRK08020 83 LETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGW-ELTLAD--------- 152 (391)
T ss_pred EEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeE-EEEECC---------
Confidence 000 0112234556777888887766799999999999998776654 344432
Q ss_pred CCCCCCeEEEeCEEEEccCCCCC
Q 039605 229 QSCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 229 ~~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
..+++|+.||.|+|.++.
T Consensus 153 -----g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 153 -----GEEIQAKLVIGADGANSQ 170 (391)
T ss_pred -----CCEEEeCEEEEeCCCCch
Confidence 247999999999999874
No 93
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.34 E-value=1.1e-11 Score=122.13 Aligned_cols=131 Identities=27% Similarity=0.280 Sum_probs=89.6
Q ss_pred cEEEECCcHHHHHHHHHHhcCCC-CcEEEEeccCCCCCCccee-------e---------------------------c-
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPN-VQVAIIEQSVSPGGASGSV-------V---------------------------R- 151 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G-~kV~viEk~~~~GG~~~~~-------~---------------------------~- 151 (352)
||||||+|.+|++||+.|+++ | ++|+||||.+..||..... . .
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~-G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKA-GAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGIND 79 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCC
Confidence 899999999999999999999 9 9999999998766541110 0 0
Q ss_pred -----------chHHHHHHHcCCccccC-----CC--eEEE-------echHHHHHHHHHHHHcCCCcEEEccceeEEEE
Q 039605 152 -----------KPAHLFLDELGIDYDEQ-----DN--YVVI-------KHAALFTSTIMSKLLARPNVKLFNAVAAEDLI 206 (352)
Q Consensus 152 -----------~~~~~~l~~~Gi~~~~~-----~~--~~~~-------~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~ 206 (352)
....+|+. .++.+... .. +... .....+...|.+.+. +.|+++++++++++|+
T Consensus 80 ~~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~gv~i~~~~~v~~l~ 157 (439)
T TIGR01813 80 PELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAK-KEGIDTRLNSKVEDLI 157 (439)
T ss_pred HHHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHH-HcCCEEEeCCEeeEeE
Confidence 01235665 34433211 00 0000 122456677777766 6799999999999999
Q ss_pred Ee-CCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCC
Q 039605 207 VK-GNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 207 ~~-~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
.+ +++++|+.+... + ++...+.+|.||+|+|+++.
T Consensus 158 ~~~~g~v~Gv~~~~~-------~---g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 158 QDDQGTVVGVVVKGK-------G---KGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred ECCCCcEEEEEEEeC-------C---CeEEEEecceEEEecCCCCC
Confidence 86 568888877431 1 12346889999999998764
No 94
>PRK07045 putative monooxygenase; Reviewed
Probab=99.34 E-value=2.4e-11 Score=117.85 Aligned_cols=131 Identities=18% Similarity=0.285 Sum_probs=89.4
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC-cceeecchHHHHHHHcCCccc---------------cC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA-SGSVVRKPAHLFLDELGIDYD---------------EQ 168 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~-~~~~~~~~~~~~l~~~Gi~~~---------------~~ 168 (352)
..+||+||||||+|+++|+.|+++ |++|+|+|+.+...-. ....+.....+.|+++|+.-. ..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGAR-GHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHD 82 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhc-CCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecC
Confidence 367999999999999999999999 9999999998764210 111233334444444443100 00
Q ss_pred C--------------CeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCE-EEEEEEcccceeccCCCCCCCC
Q 039605 169 D--------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNR-VGGIVTNWALVSMNHDSQSCMD 233 (352)
Q Consensus 169 ~--------------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~-v~gv~~~~g~~~~~~~~~~~g~ 233 (352)
+ .+....+..++.+.|++++....|++++++++++++..+++. ++.+.+.+
T Consensus 83 g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~-------------- 148 (388)
T PRK07045 83 KELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSD-------------- 148 (388)
T ss_pred CcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCC--------------
Confidence 0 111122334566778888776789999999999999886543 44555533
Q ss_pred CeEEEeCEEEEccCCCC
Q 039605 234 PNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 234 ~~~i~A~~VIlAtG~~~ 250 (352)
..++.+|.||.|+|.++
T Consensus 149 g~~~~~~~vIgADG~~S 165 (388)
T PRK07045 149 GERVAPTVLVGADGARS 165 (388)
T ss_pred CCEEECCEEEECCCCCh
Confidence 24799999999999887
No 95
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.34 E-value=1.3e-11 Score=117.30 Aligned_cols=127 Identities=28% Similarity=0.404 Sum_probs=85.2
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCc---ceee-cc--------------hHH----HHHHHcCCcc
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGAS---GSVV-RK--------------PAH----LFLDELGIDY 165 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~---~~~~-~~--------------~~~----~~l~~~Gi~~ 165 (352)
||+|||||++|+++|++|+++ |++|+|||++...++.+ ...+ .. ... ++..+++.+.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~-G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR-GHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIPV 79 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT-TSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CEEEECcCHHHHHHHHHHHHC-CCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhcCccc
Confidence 899999999999999999999 99999999994433321 0000 00 000 1112223221
Q ss_pred c--cCCCe-----------------------------------------------------EEEechHHHHHHHHHHHHc
Q 039605 166 D--EQDNY-----------------------------------------------------VVIKHAALFTSTIMSKLLA 190 (352)
Q Consensus 166 ~--~~~~~-----------------------------------------------------~~~~~~~~~~~~L~~~~~~ 190 (352)
. ..+.+ ....+...+.+.|.+.+.
T Consensus 80 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~~- 158 (358)
T PF01266_consen 80 GFRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEAQ- 158 (358)
T ss_dssp EEEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHHH-
T ss_pred ccccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHHH-
Confidence 1 00000 012345677788888877
Q ss_pred CCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCC
Q 039605 191 RPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 191 ~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
+.|++++.+++|+++..+++++.+|.+.++ +++||.||+|+|.++.
T Consensus 159 ~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g---------------~i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 159 RAGVEIRTGTEVTSIDVDGGRVTGVRTSDG---------------EIRADRVVLAAGAWSP 204 (358)
T ss_dssp HTT-EEEESEEEEEEEEETTEEEEEEETTE---------------EEEECEEEE--GGGHH
T ss_pred Hhhhhccccccccchhhccccccccccccc---------------ccccceeEecccccce
Confidence 459999999999999999999999998653 5999999999998763
No 96
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.34 E-value=5.7e-11 Score=122.51 Aligned_cols=127 Identities=13% Similarity=0.038 Sum_probs=77.6
Q ss_pred CCCcEEEccceeEEEEEeCCEE--EEEEEcccceeccCCC---CCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcccccc
Q 039605 191 RPNVKLFNAVAAEDLIVKGNRV--GGIVTNWALVSMNHDS---QSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDM 265 (352)
Q Consensus 191 ~~gv~i~~~t~v~~l~~~~g~v--~gv~~~~g~~~~~~~~---~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~ 265 (352)
+.|++|++++.+.++..+++++ ..+....+....+... ...++..++.+|.||+|+|....... ....++..
T Consensus 373 ~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~l---l~~~gl~~ 449 (652)
T PRK12814 373 AEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPI---AEAAGIGT 449 (652)
T ss_pred HcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCccc---ccccCccc
Confidence 4689999998888887766653 2222221100000000 00223467999999999997544322 12222333
Q ss_pred c-cccceeec-ccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCCCCCC
Q 039605 266 N-TAEDAIVK-LTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNAM 327 (352)
Q Consensus 266 ~-~g~~~vv~-~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~~~~~ 327 (352)
+ .+...+.+ ...+..||+|++||++... ..+..++.+|++||..|.++|.+....
T Consensus 450 ~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~-------~~v~~Ai~~G~~AA~~I~~~L~g~~~~ 506 (652)
T PRK12814 450 SRNGTVKVDPETLQTSVAGVFAGGDCVTGA-------DIAINAVEQGKRAAHAIDLFLNGKPVT 506 (652)
T ss_pred cCCCcEeeCCCCCcCCCCCEEEcCCcCCCc-------hHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3 24444443 4678899999999997431 134456889999999999999876543
No 97
>PRK06184 hypothetical protein; Provisional
Probab=99.34 E-value=2.9e-11 Score=121.31 Aligned_cols=132 Identities=19% Similarity=0.245 Sum_probs=90.6
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCC-CcceeecchHHHHHHHcCCcc---------cc------CC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGG-ASGSVVRKPAHLFLDELGIDY---------DE------QD 169 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG-~~~~~~~~~~~~~l~~~Gi~~---------~~------~~ 169 (352)
++||+||||||+|+++|+.|+++ |++|+||||.+.+.. .....+.....+.|+++|+.- .. ..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~-Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 81 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARR-GVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDG 81 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCc
Confidence 68999999999999999999999 999999999876532 234445555667777766521 00 00
Q ss_pred Ce-------------------EEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCC
Q 039605 170 NY-------------------VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQS 230 (352)
Q Consensus 170 ~~-------------------~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~ 230 (352)
.. ....+...+.+.|.+.+. +.|++++++++++++..+++.++...... .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~-~~gv~i~~~~~v~~i~~~~~~v~v~~~~~-------~--- 150 (502)
T PRK06184 82 SVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLA-ELGHRVEFGCELVGFEQDADGVTARVAGP-------A--- 150 (502)
T ss_pred eEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHH-HCCCEEEeCcEEEEEEEcCCcEEEEEEeC-------C---
Confidence 00 011122334456666665 45899999999999988777654322110 1
Q ss_pred CCCCeEEEeCEEEEccCCCCC
Q 039605 231 CMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 231 ~g~~~~i~A~~VIlAtG~~~~ 251 (352)
+..+++||+||.|+|.++.
T Consensus 151 --~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 151 --GEETVRARYLVGADGGRSF 169 (502)
T ss_pred --CeEEEEeCEEEECCCCchH
Confidence 2368999999999999873
No 98
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.34 E-value=2.1e-11 Score=124.15 Aligned_cols=43 Identities=33% Similarity=0.543 Sum_probs=38.5
Q ss_pred cCCCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 102 ITHADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 102 ~~~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
.++.++||||||+|++|++||+.++++ |++|+||||....||.
T Consensus 5 ~~~~~~DVvVVG~G~aGl~AA~~aa~~-G~~v~llEk~~~~gG~ 47 (574)
T PRK12842 5 TNELTCDVLVIGSGAGGLSAAITARKL-GLDVVVLEKEPVFGGT 47 (574)
T ss_pred CcCCCCCEEEECcCHHHHHHHHHHHHc-CCeEEEEecCCCCCCc
Confidence 345689999999999999999999999 9999999999877654
No 99
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.33 E-value=4.1e-11 Score=115.74 Aligned_cols=128 Identities=14% Similarity=0.256 Sum_probs=93.5
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCC-----CCcceeecchHHHHHHHcCCc---------cc------
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPG-----GASGSVVRKPAHLFLDELGID---------YD------ 166 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~G-----G~~~~~~~~~~~~~l~~~Gi~---------~~------ 166 (352)
+||+|||||++|+++|+.|++. |++|+|+|+.+... ......+.....+.|+++|+. +.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~-G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 80 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK-GIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVD 80 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC-CCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEE
Confidence 5999999999999999999999 99999999874321 123344555566677776652 10
Q ss_pred cCC------------CeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCC
Q 039605 167 EQD------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDP 234 (352)
Q Consensus 167 ~~~------------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~ 234 (352)
..+ .+.+..+..++.+.|++++.+..++++++++++.++..+++.+. +.+.+
T Consensus 81 ~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~-v~~~~--------------- 144 (374)
T PRK06617 81 NKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSI-IKFDD--------------- 144 (374)
T ss_pred CCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEE-EEEcC---------------
Confidence 000 12234456788889999888766799999999999988776553 44421
Q ss_pred eEEEeCEEEEccCCCCC
Q 039605 235 NVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 235 ~~i~A~~VIlAtG~~~~ 251 (352)
.+++||.||.|+|.+|.
T Consensus 145 ~~~~adlvIgADG~~S~ 161 (374)
T PRK06617 145 KQIKCNLLIICDGANSK 161 (374)
T ss_pred CEEeeCEEEEeCCCCch
Confidence 27999999999999875
No 100
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.33 E-value=4.1e-11 Score=116.60 Aligned_cols=128 Identities=18% Similarity=0.332 Sum_probs=91.2
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCC--CcEEEEeccCCCC---CCcceeecchHHHHHHHcCCccc--c------------
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPN--VQVAIIEQSVSPG---GASGSVVRKPAHLFLDELGIDYD--E------------ 167 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G--~kV~viEk~~~~G---G~~~~~~~~~~~~~l~~~Gi~~~--~------------ 167 (352)
|||+||||||+|+++|+.|+++ | ++|+||||.+... ......+.....+.|+++|+.-. .
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~-g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQA-APHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcC-CCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 6999999999999999999998 5 9999999986432 22444555556667766664200 0
Q ss_pred -C-------------------CCeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCC
Q 039605 168 -Q-------------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHD 227 (352)
Q Consensus 168 -~-------------------~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~ 227 (352)
. ..+....+...+.+.|.+.+. +.|++++++++++++..+++.+. +.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~v~-v~~~~-------- 150 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAE-ALGIDLREATSVTDFETRDEGVT-VTLSD-------- 150 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHH-hCCCEEEcCCEEEEEEEcCCEEE-EEECC--------
Confidence 0 001123345667788888776 46999999999999988776553 44432
Q ss_pred CCCCCCCeEEEeCEEEEccCCCCC
Q 039605 228 SQSCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 228 ~~~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
..++.+|.||.|+|.++.
T Consensus 151 ------g~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 151 ------GSVLEARLLVAADGARSK 168 (403)
T ss_pred ------CCEEEeCEEEEcCCCChH
Confidence 247999999999998764
No 101
>PRK08244 hypothetical protein; Provisional
Probab=99.33 E-value=4.5e-11 Score=119.67 Aligned_cols=132 Identities=19% Similarity=0.239 Sum_probs=91.0
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCC-CcceeecchHHHHHHHcCCccc--c---------------
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGG-ASGSVVRKPAHLFLDELGIDYD--E--------------- 167 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG-~~~~~~~~~~~~~l~~~Gi~~~--~--------------- 167 (352)
++||+||||||+|+++|+.|++. |++|+||||.+.... +....+.....+.|+++|+.-. .
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 80 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALA-GVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDT 80 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccc
Confidence 57999999999999999999999 999999999875432 2344455556666666665210 0
Q ss_pred ---------CCCeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEE
Q 039605 168 ---------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVME 238 (352)
Q Consensus 168 ---------~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~ 238 (352)
...+....+...+.+.|.+.+. +.|++++++++++++..+++.+. +.+.+ .+ + ..+++
T Consensus 81 ~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~v~-v~~~~-------~~---g-~~~i~ 147 (493)
T PRK08244 81 RLDFSALDTSSNYTLFLPQAETEKVLEEHAR-SLGVEIFRGAEVLAVRQDGDGVE-VVVRG-------PD---G-LRTLT 147 (493)
T ss_pred cCCcccCCCCCCcEEEecHHHHHHHHHHHHH-HcCCeEEeCCEEEEEEEcCCeEE-EEEEe-------CC---c-cEEEE
Confidence 0011222334455566666655 56999999999999988777653 33321 01 1 25799
Q ss_pred eCEEEEccCCCCC
Q 039605 239 AKVVVSSCGHDGP 251 (352)
Q Consensus 239 A~~VIlAtG~~~~ 251 (352)
+|+||.|+|.++.
T Consensus 148 a~~vVgADG~~S~ 160 (493)
T PRK08244 148 SSYVVGADGAGSI 160 (493)
T ss_pred eCEEEECCCCChH
Confidence 9999999998873
No 102
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.33 E-value=1.9e-11 Score=122.98 Aligned_cols=161 Identities=22% Similarity=0.265 Sum_probs=115.5
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-.|+|||||..|+.+|..|++. |.+|+|+|+.+... . ...+.+
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~-g~~Vtli~~~~~l~---------------------------------~---~~~l~~ 395 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGI-VRHVTVLEFADELK---------------------------------A---DKVLQD 395 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhc-CcEEEEEEeCCcCC---------------------------------h---hHHHHH
Confidence 4799999999999999999998 99999999765321 0 012344
Q ss_pred HHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcccccc-
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDM- 265 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~- 265 (352)
.+.+..|+++++++.+.++..+++++.++.+.++ .+++..++.+|.||+|+|..+.... .... +..
T Consensus 396 ~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~---------~~~~~~~i~~D~vi~a~G~~Pn~~~---l~~~-~~~~ 462 (515)
T TIGR03140 396 KLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDR---------NSGEEKQLDLDGVFVQIGLVPNTEW---LKDA-VELN 462 (515)
T ss_pred HHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEEC---------CCCcEEEEEcCEEEEEeCCcCCchH---Hhhh-cccC
Confidence 4443469999999999999877677777776431 1123468999999999996554322 1111 332
Q ss_pred ccccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCC
Q 039605 266 NTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 323 (352)
Q Consensus 266 ~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~ 323 (352)
..+...+.+++++..|++|++||+....+ ++ +..++.+|.+||..|.+||..
T Consensus 463 ~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~---~~---~~~A~~~G~~Aa~~i~~~~~~ 514 (515)
T TIGR03140 463 RRGEIVIDERGRTSVPGIFAAGDVTTVPY---KQ---IIIAMGEGAKAALSAFDYLIR 514 (515)
T ss_pred CCCeEEECCCCCCCCCCEEEcccccCCcc---ce---EEEEEccHHHHHHHHHHHHhh
Confidence 23566666888899999999999985321 22 234588999999999999853
No 103
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.33 E-value=1.5e-11 Score=125.17 Aligned_cols=40 Identities=30% Similarity=0.615 Sum_probs=36.7
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
.++||||||+|.+|++||+.++++ |++|+||||....||.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~-G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAAR-GLDTLVVEKSAHFGGS 49 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHC-CCcEEEEEcCCCCCch
Confidence 378999999999999999999999 9999999999877663
No 104
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.32 E-value=3.8e-11 Score=117.12 Aligned_cols=129 Identities=16% Similarity=0.229 Sum_probs=88.7
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCC---------CcceeecchHHHHHHHcCCcccc---------
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGG---------ASGSVVRKPAHLFLDELGIDYDE--------- 167 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG---------~~~~~~~~~~~~~l~~~Gi~~~~--------- 167 (352)
++||+|||||++|+++|+.|+++ |++|+|||+.+.... .....+.....+.|+++|+.-..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~ 80 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGS-GLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYS 80 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcC-CCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccce
Confidence 57999999999999999999999 999999999863110 01223344455666666642110
Q ss_pred -------CC--------------CeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccC
Q 039605 168 -------QD--------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNH 226 (352)
Q Consensus 168 -------~~--------------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~ 226 (352)
.. .+....+...+.+.|.+.+. +.|+++++++++.++..+++.+. +.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~v~-v~~~~------- 151 (405)
T PRK05714 81 EMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLH-DSDIGLLANARLEQMRRSGDDWL-LTLAD------- 151 (405)
T ss_pred eEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHh-cCCCEEEcCCEEEEEEEcCCeEE-EEECC-------
Confidence 00 00112234456667777766 46899999999999987766553 44432
Q ss_pred CCCCCCCCeEEEeCEEEEccCCCCC
Q 039605 227 DSQSCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 227 ~~~~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
..+++||.||.|+|.++.
T Consensus 152 -------g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 152 -------GRQLRAPLVVAADGANSA 169 (405)
T ss_pred -------CCEEEeCEEEEecCCCch
Confidence 257999999999999874
No 105
>PRK06834 hypothetical protein; Provisional
Probab=99.32 E-value=3.9e-11 Score=119.76 Aligned_cols=129 Identities=19% Similarity=0.230 Sum_probs=89.2
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCC--CCcceeecchHHHHHHHcCCccccC--------C------
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPG--GASGSVVRKPAHLFLDELGIDYDEQ--------D------ 169 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~G--G~~~~~~~~~~~~~l~~~Gi~~~~~--------~------ 169 (352)
++||+||||||+|+++|+.|++. |++|+||||.+... +.....+.....+.|+.+|+.-... .
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~-G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALA-GVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATR 81 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEe
Confidence 57999999999999999999999 99999999986532 2234445555666666655421100 0
Q ss_pred ----------CeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEe
Q 039605 170 ----------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEA 239 (352)
Q Consensus 170 ----------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A 239 (352)
.+........+.+.|.+.+. +.|++++++++++++..+++.+. +.+.+ ..++++
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~l~-~~gv~i~~~~~v~~v~~~~~~v~-v~~~~--------------g~~i~a 145 (488)
T PRK06834 82 LDISDFPTRHNYGLALWQNHIERILAEWVG-ELGVPIYRGREVTGFAQDDTGVD-VELSD--------------GRTLRA 145 (488)
T ss_pred cccccCCCCCCccccccHHHHHHHHHHHHH-hCCCEEEcCCEEEEEEEcCCeEE-EEECC--------------CCEEEe
Confidence 01111122344455556655 56999999999999998877553 33322 247999
Q ss_pred CEEEEccCCCCC
Q 039605 240 KVVVSSCGHDGP 251 (352)
Q Consensus 240 ~~VIlAtG~~~~ 251 (352)
++||.|+|.++.
T Consensus 146 ~~vVgADG~~S~ 157 (488)
T PRK06834 146 QYLVGCDGGRSL 157 (488)
T ss_pred CEEEEecCCCCC
Confidence 999999999874
No 106
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.32 E-value=2.7e-11 Score=123.14 Aligned_cols=125 Identities=17% Similarity=0.147 Sum_probs=78.1
Q ss_pred CCCcEEEccceeEEEEEeCCEEEEEEEcccc-eeccCCCCC----CCCCeEEEeCEEEEccCCCCCCCCCCCCCcccccc
Q 039605 191 RPNVKLFNAVAAEDLIVKGNRVGGIVTNWAL-VSMNHDSQS----CMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDM 265 (352)
Q Consensus 191 ~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~-~~~~~~~~~----~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~ 265 (352)
+.|+++++++.+.++..++++..++++..-. ...+. ++. .++..++.+|.||+|+|........ .+..++..
T Consensus 317 ~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~-~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~--~~~~gl~~ 393 (564)
T PRK12771 317 REGVEINWLRTPVEIEGDENGATGLRVITVEKMELDE-DGRPSPVTGEEETLEADLVVLAIGQDIDSAGL--ESVPGVEV 393 (564)
T ss_pred HcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCC-CCCeeecCCceEEEECCEEEECcCCCCchhhh--hhccCccc
Confidence 4689999999999998765544466542100 00001 111 2345789999999999965432211 11112222
Q ss_pred ccccceeec-ccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCCCC
Q 039605 266 NTAEDAIVK-LTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPN 325 (352)
Q Consensus 266 ~~g~~~vv~-~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~~~ 325 (352)
..+...+.+ ...+..|++|++||++... .++..++.+|++||..|.++|.+..
T Consensus 394 ~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~-------~~v~~Av~~G~~aA~~i~~~L~g~~ 447 (564)
T PRK12771 394 GRGVVQVDPNFMMTGRPGVFAGGDMVPGP-------RTVTTAIGHGKKAARNIDAFLGGEP 447 (564)
T ss_pred CCCCEEeCCCCccCCCCCEEeccCcCCCc-------hHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 234433333 4567899999999997421 1345668899999999999997654
No 107
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.1e-11 Score=107.44 Aligned_cols=123 Identities=17% Similarity=0.158 Sum_probs=91.1
Q ss_pred HHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcc
Q 039605 182 STIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMK 261 (352)
Q Consensus 182 ~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~ 261 (352)
..+.+++.+.+++++++++.+.+...+.+.+.++.+++ .++ |+..++..+.++.+.|+.+...+. .+.
T Consensus 196 ~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn------~~t---ge~~dl~v~GlFf~IGH~Pat~~l--~gq- 263 (322)
T KOG0404|consen 196 KIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKN------VKT---GEETDLPVSGLFFAIGHSPATKFL--KGQ- 263 (322)
T ss_pred HHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEe------ccc---CcccccccceeEEEecCCchhhHh--cCc-
Confidence 67788888899999999999999888766666666644 222 356789999999999987543331 232
Q ss_pred ccccc-cccceee-cccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCC
Q 039605 262 ALDMN-TAEDAIV-KLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 323 (352)
Q Consensus 262 ~~~~~-~g~~~vv-~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~ 323 (352)
++++ .|++.+. ....+++||+|++||.-..- +||..+. ..+|++||..+.+||..
T Consensus 264 -ve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~k---yRQAvTa---AgsGciaaldAe~yL~s 320 (322)
T KOG0404|consen 264 -VELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKK---YRQAVTA---AGSGCIAALDAERYLTS 320 (322)
T ss_pred -eeeccCceEEeccCcccccccceeeccccchHH---HHHHHhh---hccchhhhhhHHHHhhc
Confidence 3333 3555544 34568999999999998765 3775554 67999999999999973
No 108
>PRK07190 hypothetical protein; Provisional
Probab=99.32 E-value=4.5e-11 Score=119.24 Aligned_cols=129 Identities=16% Similarity=0.233 Sum_probs=87.9
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCC-CcceeecchHHHHHHHcCCc---------ccc-----CC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGG-ASGSVVRKPAHLFLDELGID---------YDE-----QD 169 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG-~~~~~~~~~~~~~l~~~Gi~---------~~~-----~~ 169 (352)
..+||+||||||+|+++|+.|+++ |++|+||||.+.+.. +....+.....++++.+|+. ... .+
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~-Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g 82 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLC-GLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANG 82 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHc-CCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCC
Confidence 368999999999999999999999 999999999876532 23334555555666555531 000 00
Q ss_pred C------------------eEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCC
Q 039605 170 N------------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSC 231 (352)
Q Consensus 170 ~------------------~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~ 231 (352)
. +........+...|.+++. +.|++++++++++++..+++.+. +.+.+
T Consensus 83 ~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~-~~Gv~v~~~~~v~~l~~~~~~v~-v~~~~------------ 148 (487)
T PRK07190 83 KFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLK-EAGAAVKRNTSVVNIELNQAGCL-TTLSN------------ 148 (487)
T ss_pred ceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHH-HCCCEEEeCCEEEEEEEcCCeeE-EEECC------------
Confidence 0 0111222334455555555 56999999999999998877654 22222
Q ss_pred CCCeEEEeCEEEEccCCCC
Q 039605 232 MDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 232 g~~~~i~A~~VIlAtG~~~ 250 (352)
..+++|++||.|+|..+
T Consensus 149 --g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 149 --GERIQSRYVIGADGSRS 165 (487)
T ss_pred --CcEEEeCEEEECCCCCH
Confidence 24899999999999877
No 109
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.31 E-value=1.8e-11 Score=123.85 Aligned_cols=135 Identities=21% Similarity=0.299 Sum_probs=88.1
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcce---ee----c----c---------------------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGS---VV----R----K--------------------- 152 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~---~~----~----~--------------------- 152 (352)
.+|||+|||||..|+++|+.|+++ |++|+||||++...|++.. .+ + .
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~r-G~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~~ 83 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALR-GLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHC 83 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHc-CCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchHh
Confidence 368999999999999999999999 9999999998654443100 00 0 0
Q ss_pred -------------h-------HHHHHHHcCCccccC-------------CC----eEE---EechHHHHHHHHHHHHcCC
Q 039605 153 -------------P-------AHLFLDELGIDYDEQ-------------DN----YVV---IKHAALFTSTIMSKLLARP 192 (352)
Q Consensus 153 -------------~-------~~~~l~~~Gi~~~~~-------------~~----~~~---~~~~~~~~~~L~~~~~~~~ 192 (352)
. ..+++...|++.... .. +.. ..+...+...+...+. +.
T Consensus 84 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~vdp~rl~~al~~~A~-~~ 162 (546)
T PRK11101 84 VEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAK-EH 162 (546)
T ss_pred hcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEECHHHHHHHHHHHHH-hC
Confidence 0 001122234322110 00 000 1123344455555554 67
Q ss_pred CcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 193 NVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 193 gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
|++++++++|+++..++++++++.+.+. .+ ++..+|+|+.||+|+|.|+
T Consensus 163 Ga~i~~~t~V~~i~~~~~~v~gv~v~d~------~~---g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 163 GAQILTYHEVTGLIREGDTVCGVRVRDH------LT---GETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred CCEEEeccEEEEEEEcCCeEEEEEEEEc------CC---CcEEEEECCEEEECCChhH
Confidence 9999999999999998889988887431 11 1335899999999999986
No 110
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.31 E-value=4.3e-11 Score=114.41 Aligned_cols=125 Identities=26% Similarity=0.388 Sum_probs=84.6
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEE-eccCCCCCC-cceeecc----hHHHHH-----------HHcCCccccC--
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAII-EQSVSPGGA-SGSVVRK----PAHLFL-----------DELGIDYDEQ-- 168 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~vi-Ek~~~~GG~-~~~~~~~----~~~~~l-----------~~~Gi~~~~~-- 168 (352)
||+|||||.||+.||+.+++. |++|+|+ ++.+..+.. ++-.+.. ...+.+ +..++.+...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~-G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~ 79 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARM-GAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNR 79 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-T--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEEST
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcccc
Confidence 899999999999999999999 9999999 454444432 1111111 112222 3334433211
Q ss_pred ------CCeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEE
Q 039605 169 ------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVV 242 (352)
Q Consensus 169 ------~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~V 242 (352)
.......+...|.+.+.+.+...++++++. .+|++|+.++++|.||.+.+| ..+.++.|
T Consensus 80 skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~e~~~v~GV~~~~g--------------~~~~a~~v 144 (392)
T PF01134_consen 80 SKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIVENGKVKGVVTKDG--------------EEIEADAV 144 (392)
T ss_dssp TS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEECTTEEEEEEETTS--------------EEEEECEE
T ss_pred cCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEecCCeEEEEEeCCC--------------CEEecCEE
Confidence 112224556777788888888889999975 589999999999999999653 68999999
Q ss_pred EEccCC
Q 039605 243 VSSCGH 248 (352)
Q Consensus 243 IlAtG~ 248 (352)
|+|||.
T Consensus 145 VlaTGt 150 (392)
T PF01134_consen 145 VLATGT 150 (392)
T ss_dssp EE-TTT
T ss_pred EEeccc
Confidence 999997
No 111
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.31 E-value=2.8e-11 Score=116.94 Aligned_cols=131 Identities=24% Similarity=0.325 Sum_probs=93.4
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCC--CcEEEEeccCCCCCC----ccee----e-cc--------------hHHHHHH
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPN--VQVAIIEQSVSPGGA----SGSV----V-RK--------------PAHLFLD 159 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G--~kV~viEk~~~~GG~----~~~~----~-~~--------------~~~~~l~ 159 (352)
.+|||+|||||+.|+++|+.|++. + ++|+||||...++.. ++.. + .. ...++++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~-~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~k 80 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEY-EPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICK 80 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHh-CCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHH
Confidence 368999999999999999999997 6 999999998876532 0000 0 00 1135666
Q ss_pred HcCCccccCCCeEE------------------------------------------------------EechHHHHHHHH
Q 039605 160 ELGIDYDEQDNYVV------------------------------------------------------IKHAALFTSTIM 185 (352)
Q Consensus 160 ~~Gi~~~~~~~~~~------------------------------------------------------~~~~~~~~~~L~ 185 (352)
+++++|...+.+.+ ..+..++...+.
T Consensus 81 q~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~ 160 (429)
T COG0579 81 QLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALA 160 (429)
T ss_pred HhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHH
Confidence 77766654332222 123345677888
Q ss_pred HHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 186 SKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 186 ~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
+.+.++ |++++++++|.++..+++.++-+.+++| +.. ++|+.||+|.|..+
T Consensus 161 e~a~~~-g~~i~ln~eV~~i~~~~dg~~~~~~~~g------------~~~-~~ak~Vin~AGl~A 211 (429)
T COG0579 161 EEAQAN-GVELRLNTEVTGIEKQSDGVFVLNTSNG------------EET-LEAKFVINAAGLYA 211 (429)
T ss_pred HHHHHc-CCEEEecCeeeEEEEeCCceEEEEecCC------------cEE-EEeeEEEECCchhH
Confidence 888754 9999999999999998775555555432 223 99999999999876
No 112
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.31 E-value=9e-13 Score=129.52 Aligned_cols=128 Identities=27% Similarity=0.408 Sum_probs=34.6
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceee-----cch---------HHHHHHHcCC----ccccCC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVV-----RKP---------AHLFLDELGI----DYDEQD 169 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~-----~~~---------~~~~l~~~Gi----~~~~~~ 169 (352)
||||||||++|++||+.+++. |++|+|||+.+.+||...... ... ..++++.+.- +.....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~-G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~ 79 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARA-GAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRY 79 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-TS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST------------
T ss_pred CEEEECccHHHHHHHHHHHHC-CCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccccc
Confidence 899999999999999999999 999999999999987621111 100 1122222211 000000
Q ss_pred CeE--EEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccC
Q 039605 170 NYV--VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCG 247 (352)
Q Consensus 170 ~~~--~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG 247 (352)
.+. ...+ ......+++++..+.|+++++++.+.+++.+++++.+|.+.+. . ...+|+|+.||+|||
T Consensus 80 ~~~~~~~~~-~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~-------~----g~~~i~A~~~IDaTG 147 (428)
T PF12831_consen 80 GWVSNVPFD-PEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETK-------S----GRKEIRAKVFIDATG 147 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccc-ccccccccccccccccccccccccccccccccccccccccccc-------c----ccccccccccccccc
Confidence 000 0111 2222334444445789999999999999999999999988531 1 147899999999999
Q ss_pred C
Q 039605 248 H 248 (352)
Q Consensus 248 ~ 248 (352)
.
T Consensus 148 ~ 148 (428)
T PF12831_consen 148 D 148 (428)
T ss_dssp -
T ss_pred c
Confidence 4
No 113
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.30 E-value=6.1e-11 Score=114.59 Aligned_cols=128 Identities=22% Similarity=0.351 Sum_probs=89.9
Q ss_pred cEEEECCcHHHHHHHHHHhcCCC-CcEEEEeccCCCCC-----CcceeecchHHHHHHHcCCcccc--------------
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPN-VQVAIIEQSVSPGG-----ASGSVVRKPAHLFLDELGIDYDE-------------- 167 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G-~kV~viEk~~~~GG-----~~~~~~~~~~~~~l~~~Gi~~~~-------------- 167 (352)
||+||||||+|+++|+.|+++ | ++|+|+||.+...- .....+.....+.++++|+.-..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~ 79 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL-GKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSD 79 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC-CCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEc
Confidence 799999999999999999999 9 99999999865421 12233444455666666652110
Q ss_pred C---CC------------eEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCC
Q 039605 168 Q---DN------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCM 232 (352)
Q Consensus 168 ~---~~------------~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g 232 (352)
. .. ..+..+..++.+.|.+.+....|++++++++++++..+++.+. +.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~------------- 145 (382)
T TIGR01984 80 QGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVR-VTLDN------------- 145 (382)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEE-EEECC-------------
Confidence 0 00 0122344567788888887546999999999999987776553 44432
Q ss_pred CCeEEEeCEEEEccCCCCC
Q 039605 233 DPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 233 ~~~~i~A~~VIlAtG~~~~ 251 (352)
..++.||.||.|+|.++.
T Consensus 146 -g~~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 146 -GQQLRAKLLIAADGANSK 163 (382)
T ss_pred -CCEEEeeEEEEecCCChH
Confidence 247999999999998863
No 114
>PRK12839 hypothetical protein; Provisional
Probab=99.30 E-value=3.3e-11 Score=122.35 Aligned_cols=41 Identities=39% Similarity=0.602 Sum_probs=37.3
Q ss_pred CCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 104 HADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 104 ~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
+.++||||||+|.+|+++|+.|++. |++|+||||....||.
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~-g~~v~~iek~~~~gg~ 46 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYG-GAKVLVVEKASTCGGA 46 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCcc
Confidence 3578999999999999999999999 9999999998877655
No 115
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.29 E-value=1.2e-10 Score=118.01 Aligned_cols=134 Identities=22% Similarity=0.312 Sum_probs=93.7
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCC-CcceeecchHHHHHHHcCCccc---------------cC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGG-ASGSVVRKPAHLFLDELGIDYD---------------EQ 168 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG-~~~~~~~~~~~~~l~~~Gi~~~---------------~~ 168 (352)
.++||+||||||+|+++|+.|++. |++|+||||.+.... .....+.....+.|+++|+.-. ..
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 100 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQ-GVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRD 100 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCC
Confidence 578999999999999999999999 999999999875533 2345556666777777665311 00
Q ss_pred CCe---------------EEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCC
Q 039605 169 DNY---------------VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMD 233 (352)
Q Consensus 169 ~~~---------------~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~ 233 (352)
... ....+...+.+.|.+.+.+..+++++++++++++..+++.+. +.+.. .+ .
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~-v~~~~-------~~----g 168 (547)
T PRK08132 101 EEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVT-LTVET-------PD----G 168 (547)
T ss_pred CeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEE-EEEEC-------CC----C
Confidence 000 011223345567777777667899999999999988776553 22221 11 1
Q ss_pred CeEEEeCEEEEccCCCCC
Q 039605 234 PNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 234 ~~~i~A~~VIlAtG~~~~ 251 (352)
..++++|+||.|+|.++.
T Consensus 169 ~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 169 PYTLEADWVIACDGARSP 186 (547)
T ss_pred cEEEEeCEEEECCCCCcH
Confidence 247999999999998874
No 116
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.29 E-value=7.5e-11 Score=113.84 Aligned_cols=128 Identities=20% Similarity=0.344 Sum_probs=89.8
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCC------CcceeecchHHHHHHHcCCccc---------------
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGG------ASGSVVRKPAHLFLDELGIDYD--------------- 166 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG------~~~~~~~~~~~~~l~~~Gi~~~--------------- 166 (352)
||+|||||++|+++|+.|+++ |++|+|+||.+.++- +....+.....+.|+++|+.-.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~-G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 79 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS-GLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVS 79 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC-CCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEE
Confidence 799999999999999999999 999999999976431 1223344445566666654210
Q ss_pred -cCC--------------CeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCC
Q 039605 167 -EQD--------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSC 231 (352)
Q Consensus 167 -~~~--------------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~ 231 (352)
... .+....+..++.+.|++.+.+..+++++++++++++..+++.+. +.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-v~~~~------------ 146 (385)
T TIGR01988 80 DGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVE-LTLDD------------ 146 (385)
T ss_pred eCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeE-EEECC------------
Confidence 000 01122345567788888887554599999999999988776653 44432
Q ss_pred CCCeEEEeCEEEEccCCCCC
Q 039605 232 MDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 232 g~~~~i~A~~VIlAtG~~~~ 251 (352)
..++.+|.||.|+|.++.
T Consensus 147 --g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 147 --GQQLRARLLVGADGANSK 164 (385)
T ss_pred --CCEEEeeEEEEeCCCCCH
Confidence 247999999999998764
No 117
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.29 E-value=4.8e-11 Score=121.61 Aligned_cols=40 Identities=35% Similarity=0.609 Sum_probs=36.6
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
.++||||||+|.+|+++|+.++++ |++|+||||....||.
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~-g~~v~~iek~~~~gg~ 50 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWH-GLKVIVVEKDPVFGGT 50 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCCcc
Confidence 478999999999999999999999 9999999998776654
No 118
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.29 E-value=7.7e-11 Score=114.49 Aligned_cols=130 Identities=21% Similarity=0.328 Sum_probs=91.9
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC-cceeecchHHHHHHHcCCccc---------------c-C
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA-SGSVVRKPAHLFLDELGIDYD---------------E-Q 168 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~-~~~~~~~~~~~~l~~~Gi~~~---------------~-~ 168 (352)
..||+|||||++|+++|+.|++. |++|+|+||.+..+.. ....+.....+.|+.+|+.-. . .
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQ-GIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVD 82 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhC-CCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCC
Confidence 46999999999999999999999 9999999998765421 233445555666666665210 0 0
Q ss_pred CCe-----------------EEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCC
Q 039605 169 DNY-----------------VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSC 231 (352)
Q Consensus 169 ~~~-----------------~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~ 231 (352)
+.. ....+..++.+.|++.+.+..+++++++++++++..+++.+. +...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~-v~~~~------------ 149 (396)
T PRK08163 83 AEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVT-VFDQQ------------ 149 (396)
T ss_pred CCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceE-EEEcC------------
Confidence 000 112345566777888877556799999999999987766543 43322
Q ss_pred CCCeEEEeCEEEEccCCCCC
Q 039605 232 MDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 232 g~~~~i~A~~VIlAtG~~~~ 251 (352)
..++.+|.||.|+|.++.
T Consensus 150 --g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 150 --GNRWTGDALIGCDGVKSV 167 (396)
T ss_pred --CCEEecCEEEECCCcChH
Confidence 257999999999998864
No 119
>PRK07236 hypothetical protein; Provisional
Probab=99.29 E-value=1.2e-10 Score=112.83 Aligned_cols=129 Identities=16% Similarity=0.182 Sum_probs=88.3
Q ss_pred CCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCC--CCcceeecchHHHHHHHcCCccccC-----CCeEE---
Q 039605 104 HADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPG--GASGSVVRKPAHLFLDELGIDYDEQ-----DNYVV--- 173 (352)
Q Consensus 104 ~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~G--G~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~~~--- 173 (352)
+...||+|||||++|+++|+.|++. |++|+|+||.+... .+....+.....+.|+++|+..... .....
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~ 82 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDR 82 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeC
Confidence 3467999999999999999999999 99999999986432 1233445666778888888742210 00000
Q ss_pred -------------EechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeC
Q 039605 174 -------------IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAK 240 (352)
Q Consensus 174 -------------~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~ 240 (352)
..+...+.+.|++.+ .+++++++++++++..+++.+. +...+ ..++++|
T Consensus 83 ~g~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~-v~~~~--------------g~~~~ad 144 (386)
T PRK07236 83 DGRVVQRRPMPQTQTSWNVLYRALRAAF---PAERYHLGETLVGFEQDGDRVT-ARFAD--------------GRRETAD 144 (386)
T ss_pred CCCEeeccCCCccccCHHHHHHHHHHhC---CCcEEEcCCEEEEEEecCCeEE-EEECC--------------CCEEEeC
Confidence 011223334444322 4678999999999988776654 44433 2579999
Q ss_pred EEEEccCCCCC
Q 039605 241 VVVSSCGHDGP 251 (352)
Q Consensus 241 ~VIlAtG~~~~ 251 (352)
.||.|+|.++.
T Consensus 145 ~vIgADG~~S~ 155 (386)
T PRK07236 145 LLVGADGGRST 155 (386)
T ss_pred EEEECCCCCch
Confidence 99999998874
No 120
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.29 E-value=2.2e-10 Score=113.90 Aligned_cols=122 Identities=16% Similarity=0.091 Sum_probs=75.4
Q ss_pred CCCcEEEccceeEEEEEe-CCEEEEEEEcccc-eeccCCCC------CCCCCeEEEeCEEEEccCCCCCCCCCCCCCccc
Q 039605 191 RPNVKLFNAVAAEDLIVK-GNRVGGIVTNWAL-VSMNHDSQ------SCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKA 262 (352)
Q Consensus 191 ~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~g~-~~~~~~~~------~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~ 262 (352)
+.|+++++++.+.++..+ ++++.++++.... ...+ .++ ..++..++.+|.||+|+|..+... .+....+
T Consensus 332 ~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~-~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~--~~~~~~g 408 (467)
T TIGR01318 332 EEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPD-ADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAM--PWLAGHG 408 (467)
T ss_pred hcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccC-CCCCccceecCCceEEEECCEEEECCcCCCCcc--ccccccC
Confidence 568999999999998764 4678777652100 0000 011 013456899999999999654321 0111112
Q ss_pred cccc-cccceee----cccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcC
Q 039605 263 LDMN-TAEDAIV----KLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 322 (352)
Q Consensus 263 ~~~~-~g~~~vv----~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~ 322 (352)
+..+ .+...+. .++.+..|++|++||+.... . ....++.+|++||..|.+||.
T Consensus 409 l~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~----~---~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 409 ITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGA----D---LVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred ccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCc----c---HHHHHHHHHHHHHHHHHHHhc
Confidence 2222 2333333 34567889999999997431 1 233568899999999999984
No 121
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.28 E-value=2e-10 Score=111.99 Aligned_cols=126 Identities=14% Similarity=0.112 Sum_probs=80.3
Q ss_pred HHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCC-------
Q 039605 182 STIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGA------- 254 (352)
Q Consensus 182 ~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~------- 254 (352)
+.|.+.+. +.|++++.+++|.++..+++++..+...++ +...+.+|.||+|+|.+...+.
T Consensus 263 ~aL~~~l~-~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g------------~~~~i~AD~VVLAtGrf~s~GL~a~~~~i 329 (422)
T PRK05329 263 NALRRAFE-RLGGRIMPGDEVLGAEFEGGRVTAVWTRNH------------GDIPLRARHFVLATGSFFSGGLVAERDGI 329 (422)
T ss_pred HHHHHHHH-hCCCEEEeCCEEEEEEEeCCEEEEEEeeCC------------ceEEEECCEEEEeCCCcccCceeccCCcc
Confidence 44555554 579999999999999988887766554221 2457999999999997642211
Q ss_pred ----CCC----CC-----------------ccccccccccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhc
Q 039605 255 ----TGV----RG-----------------MKALDMNTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMIS 309 (352)
Q Consensus 255 ----~g~----~g-----------------~~~~~~~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~s 309 (352)
.++ +. ..++..+..-.-+....++.++.+|++|....+++. .+++-.-|-++.+
T Consensus 330 ~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~~~g~~~~~nl~a~G~vl~g~d~-~~~~~g~Gva~~t 408 (422)
T PRK05329 330 REPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLDSQGGPVIENLYAAGAVLGGYDP-IREGCGSGVALAT 408 (422)
T ss_pred ccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCcccCCCCeeccceEEeeehhcCCch-HHhCCCchhHHHH
Confidence 010 00 001111111111112233468999999999887653 3556666667899
Q ss_pred hHHHHHHHHHHc
Q 039605 310 GQKAAHLALKSL 321 (352)
Q Consensus 310 G~~aA~~i~~~l 321 (352)
|-.||+.|.+..
T Consensus 409 a~~a~~~~~~~~ 420 (422)
T PRK05329 409 ALHAAEQIAEEA 420 (422)
T ss_pred HHHHHHHHHHhh
Confidence 999999998754
No 122
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.28 E-value=6.6e-11 Score=119.71 Aligned_cols=135 Identities=21% Similarity=0.263 Sum_probs=93.3
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC-cceeecchHHHHHHHcCCccc---------------cC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA-SGSVVRKPAHLFLDELGIDYD---------------EQ 168 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~-~~~~~~~~~~~~l~~~Gi~~~---------------~~ 168 (352)
.++||+||||||+|+++|+.|++. |++|+||||....... ....+.....+.|+++|+.-. ..
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~-G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 87 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQY-GVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAK 87 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCC
Confidence 468999999999999999999999 9999999998765432 334445555666666654211 00
Q ss_pred CCeE----------------EEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCC
Q 039605 169 DNYV----------------VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCM 232 (352)
Q Consensus 169 ~~~~----------------~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g 232 (352)
+... ...+...+.+.|.+.+.+..|++++++++++++..+++.+. +.+.+ .+|
T Consensus 88 g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~-v~~~~----------~~G 156 (538)
T PRK06183 88 GRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVT-VTLTD----------ADG 156 (538)
T ss_pred CCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEE-EEEEc----------CCC
Confidence 0000 01122344566677776567999999999999998877654 33321 012
Q ss_pred CCeEEEeCEEEEccCCCCC
Q 039605 233 DPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 233 ~~~~i~A~~VIlAtG~~~~ 251 (352)
+..+++||+||.|+|.++.
T Consensus 157 ~~~~i~ad~vVgADG~~S~ 175 (538)
T PRK06183 157 QRETVRARYVVGCDGANSF 175 (538)
T ss_pred CEEEEEEEEEEecCCCchh
Confidence 3468999999999999874
No 123
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.28 E-value=1.1e-10 Score=115.14 Aligned_cols=130 Identities=19% Similarity=0.300 Sum_probs=89.1
Q ss_pred ccEEEECCcHHHHHHHHHHhc----CCCCcEEEEeccCCCC----------C---CcceeecchHHHHHHHcCCcccc--
Q 039605 107 TDVVVVGAGSAGLSCAYEISK----NPNVQVAIIEQSVSPG----------G---ASGSVVRKPAHLFLDELGIDYDE-- 167 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~----~~G~kV~viEk~~~~G----------G---~~~~~~~~~~~~~l~~~Gi~~~~-- 167 (352)
|||+|||||++|+++|+.|++ . |++|+|||+.+.+. + .....+.....+.|+.+|+.-..
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~-G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~ 79 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTK-DLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQS 79 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccC-CCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhh
Confidence 699999999999999999998 7 99999999953221 1 13445556667777776652110
Q ss_pred --------------CC-------------CeEEEechHHHHHHHHHHHHcCC--CcEEEccceeEEEEEe------CCEE
Q 039605 168 --------------QD-------------NYVVIKHAALFTSTIMSKLLARP--NVKLFNAVAAEDLIVK------GNRV 212 (352)
Q Consensus 168 --------------~~-------------~~~~~~~~~~~~~~L~~~~~~~~--gv~i~~~t~v~~l~~~------~g~v 212 (352)
.. .+.+..+...+.+.|.+.+.+.. ++++++++++.++..+ ++.-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~ 159 (437)
T TIGR01989 80 DRIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNW 159 (437)
T ss_pred hcCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCc
Confidence 00 01123345567778888877655 6999999999999753 1211
Q ss_pred EEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCC
Q 039605 213 GGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 213 ~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
+.+.+.+ ..+++|+.||.|+|.+|.
T Consensus 160 v~v~~~~--------------g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 160 VHITLSD--------------GQVLYTKLLIGADGSNSN 184 (437)
T ss_pred eEEEEcC--------------CCEEEeeEEEEecCCCCh
Confidence 2344432 258999999999999874
No 124
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.28 E-value=8.6e-11 Score=114.22 Aligned_cols=132 Identities=17% Similarity=0.203 Sum_probs=89.7
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCC---CCCcceeecchHHHHHHHcCCccc--------------cC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSP---GGASGSVVRKPAHLFLDELGIDYD--------------EQ 168 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~---GG~~~~~~~~~~~~~l~~~Gi~~~--------------~~ 168 (352)
++||+||||||+|+++|+.|++. |++|+|+||.+.. +......+.....+.|+++|+.-. ..
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 80 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFD 80 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc-CCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEEC
Confidence 57999999999999999999999 9999999998742 111233456667777877776310 00
Q ss_pred CC-------------eEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEE-eCCEEEEEEEcccceeccCCCCCCCCC
Q 039605 169 DN-------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGNRVGGIVTNWALVSMNHDSQSCMDP 234 (352)
Q Consensus 169 ~~-------------~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~g~~~~~~~~~~~g~~ 234 (352)
+. .....+...+.+.|++.+. ..|++++++++++++.. +++.+ .+.... +|+.
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~-~~gv~v~~~~~v~~i~~~~~~~~-~V~~~~-----------~G~~ 147 (392)
T PRK08243 81 GRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARL-AAGGPIRFEASDVALHDFDSDRP-YVTYEK-----------DGEE 147 (392)
T ss_pred CEEEEeccccccCCceEEEeCcHHHHHHHHHHHH-hCCCeEEEeeeEEEEEecCCCce-EEEEEc-----------CCeE
Confidence 00 0011123455566777665 56999999999999876 33333 344321 1234
Q ss_pred eEEEeCEEEEccCCCCC
Q 039605 235 NVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 235 ~~i~A~~VIlAtG~~~~ 251 (352)
.+++||+||.|+|.+|.
T Consensus 148 ~~i~ad~vVgADG~~S~ 164 (392)
T PRK08243 148 HRLDCDFIAGCDGFHGV 164 (392)
T ss_pred EEEEeCEEEECCCCCCc
Confidence 68999999999998874
No 125
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.28 E-value=1.7e-10 Score=108.36 Aligned_cols=143 Identities=28% Similarity=0.394 Sum_probs=97.7
Q ss_pred CCccEEEECCcHHHHHHHHHHhcC-----CCCcEEEEeccCCCCCC--cceeecchHHHHH----HHcCCcccc------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKN-----PNVQVAIIEQSVSPGGA--SGSVVRKPAHLFL----DELGIDYDE------ 167 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~-----~G~kV~viEk~~~~GG~--~~~~~~~~~~~~l----~~~Gi~~~~------ 167 (352)
.++||+||||||+||+||++|.+. ..++|+|+||...+||. ++.++.....+.| ++.+-+...
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~ 154 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDK 154 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccccc
Confidence 579999999999999999999762 16799999999999886 3334433222111 111211110
Q ss_pred --------------------CCCeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEe-CCEEEEEEEcccceeccC
Q 039605 168 --------------------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGIVTNWALVSMNH 226 (352)
Q Consensus 168 --------------------~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~g~~~~~~ 226 (352)
.++| +.....+.+.|-+++. +.|++++.+..+.+++.+ ++.|.|+-+++-.+..+.
T Consensus 155 ~~fLt~~~~i~vPv~~pm~NhGNY--vv~L~~~v~wLg~kAE-e~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G 231 (621)
T KOG2415|consen 155 FKFLTGKGRISVPVPSPMDNHGNY--VVSLGQLVRWLGEKAE-ELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDG 231 (621)
T ss_pred eeeeccCceeecCCCcccccCCcE--EEEHHHHHHHHHHHHH-hhCceeccccchhheeEcCCCcEeeEeeccccccCCC
Confidence 1112 2334677788888886 689999999999999987 578999998874443332
Q ss_pred CCC-CCCCCeEEEeCEEEEccCCCC
Q 039605 227 DSQ-SCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 227 ~~~-~~g~~~~i~A~~VIlAtG~~~ 250 (352)
... ......++.|+..|.|-|..+
T Consensus 232 ~pKd~FerGme~hak~TifAEGc~G 256 (621)
T KOG2415|consen 232 APKDTFERGMEFHAKVTIFAEGCHG 256 (621)
T ss_pred CccccccccceecceeEEEeccccc
Confidence 211 111235799999999999776
No 126
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.27 E-value=7.3e-11 Score=120.21 Aligned_cols=60 Identities=18% Similarity=0.138 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEe-CEEEEccCCCCC
Q 039605 180 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEA-KVVVSSCGHDGP 251 (352)
Q Consensus 180 ~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A-~~VIlAtG~~~~ 251 (352)
+...|++.+. +.|+++++++.+++|+.++++|+||.+..+ ++...+.+ +.||+|||++..
T Consensus 223 l~~aL~~~~~-~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~-----------g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 223 LIGRLLYSLR-ARGVRILTQTDVESLETDHGRVIGATVVQG-----------GVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred HHHHHHHHHH-hCCCEEEeCCEEEEEEeeCCEEEEEEEecC-----------CeEEEEEccceEEECCCCccc
Confidence 4455666665 679999999999999988899999877421 12457887 789999999764
No 127
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.27 E-value=7.7e-11 Score=116.56 Aligned_cols=169 Identities=17% Similarity=0.146 Sum_probs=111.6
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-.|+|||+|..|+-+|..|.+. |.+|+++++....- .. .. ...++
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~-G~~Vtlv~~~~~~~---------------------~~--------~~-----~~~~~ 317 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRL-GAEVHCLYRRTRED---------------------MT--------AR-----VEEIA 317 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCEEEEEeecCccc---------------------CC--------CC-----HHHHH
Confidence 4799999999999999999999 99999999874210 00 00 11123
Q ss_pred HHHcCCCcEEEccceeEEEEEe-CCEEEEEEEcccceeccCCCC------CCCCCeEEEeCEEEEccCCCCCCCCCCCCC
Q 039605 187 KLLARPNVKLFNAVAAEDLIVK-GNRVGGIVTNWALVSMNHDSQ------SCMDPNVMEAKVVVSSCGHDGPFGATGVRG 259 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~g~~~~~~~~~------~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g 259 (352)
.+. +.|+++++++.+.++..+ ++++.++.+..........++ ..++..++.+|.||+|+|..+... +..
T Consensus 318 ~l~-~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~---~l~ 393 (449)
T TIGR01316 318 HAE-EEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPI---MAE 393 (449)
T ss_pred HHH-hCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCch---hhh
Confidence 333 579999999999999875 467878776420000000011 012345799999999999654321 111
Q ss_pred ccccccc-cccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHc
Q 039605 260 MKALDMN-TAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 321 (352)
Q Consensus 260 ~~~~~~~-~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l 321 (352)
..++..+ .+...+.+.++++.|++|++||+.... . .+..++.+|++||..|.+||
T Consensus 394 ~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~----~---~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 394 TTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGA----A---TVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred ccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCc----H---HHHHHHHHHHHHHHHHHhhC
Confidence 1123322 344455566788899999999997421 1 34456899999999999986
No 128
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.27 E-value=5.9e-11 Score=114.78 Aligned_cols=160 Identities=16% Similarity=0.187 Sum_probs=109.8
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
.+|+|||+|+.|+.+|..|++. |.+|+++++.+.+... .........+.+
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~-g~~Vtlv~~~~~~l~~-----------------------------~~~~~~~~~l~~ 191 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRA-GKAVTLVDNAASLLAS-----------------------------LMPPEVSSRLQH 191 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCcccch-----------------------------hCCHHHHHHHHH
Confidence 4799999999999999999999 9999999987643110 001223344444
Q ss_pred HHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCccccccc
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDMN 266 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~~ 266 (352)
.+. +.|+++++++.+.++..+++.+ .+.+.+ ..++.+|.||+|+|..+.... ....++..+
T Consensus 192 ~l~-~~gV~i~~~~~v~~i~~~~~~~-~v~~~~--------------g~~i~~D~vI~a~G~~p~~~l---~~~~gl~~~ 252 (377)
T PRK04965 192 RLT-EMGVHLLLKSQLQGLEKTDSGI-RATLDS--------------GRSIEVDAVIAAAGLRPNTAL---ARRAGLAVN 252 (377)
T ss_pred HHH-hCCCEEEECCeEEEEEccCCEE-EEEEcC--------------CcEEECCEEEECcCCCcchHH---HHHCCCCcC
Confidence 444 6799999999999988765443 344432 257999999999997654322 112233334
Q ss_pred cccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHH
Q 039605 267 TAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 267 ~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
.+ ..+.+++++..|++|++||++... +. .-+.+..++.+|+.+|..+..
T Consensus 253 ~g-i~vd~~l~ts~~~VyA~GD~a~~~-~~--~~~~~~~a~~~g~~~a~n~~g 301 (377)
T PRK04965 253 RG-IVVDSYLQTSAPDIYALGDCAEIN-GQ--VLPFLQPIQLSAMALAKNLLG 301 (377)
T ss_pred CC-EEECCCcccCCCCEEEeeecEeEC-Cc--eeehHHHHHHHHHHHHHHhcC
Confidence 44 455677888999999999998642 21 123344457889999988864
No 129
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.27 E-value=5.1e-11 Score=116.02 Aligned_cols=162 Identities=21% Similarity=0.239 Sum_probs=111.1
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-+|+|||+|..|+.+|..|++. |.+|+|||+.+.+... .........+.+
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~l~~-----------------------------~~~~~~~~~l~~ 194 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQR-RCKVTVIELAATVMGR-----------------------------NAPPPVQRYLLQ 194 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCcchhh-----------------------------hcCHHHHHHHHH
Confidence 3799999999999999999999 9999999987643210 001233344444
Q ss_pred HHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCccccccc
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDMN 266 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~~ 266 (352)
.+. +.|+++++++.++++.. ++.+ .+.+.+ ..++.+|.||+|+|..+.... ....++..+
T Consensus 195 ~l~-~~GV~i~~~~~V~~i~~-~~~~-~v~l~~--------------g~~i~aD~Vv~a~G~~pn~~l---~~~~gl~~~ 254 (396)
T PRK09754 195 RHQ-QAGVRILLNNAIEHVVD-GEKV-ELTLQS--------------GETLQADVVIYGIGISANDQL---AREANLDTA 254 (396)
T ss_pred HHH-HCCCEEEeCCeeEEEEc-CCEE-EEEECC--------------CCEEECCEEEECCCCChhhHH---HHhcCCCcC
Confidence 444 56999999999999865 3333 344432 247999999999997654321 111223333
Q ss_pred cccceeecccccccCceeEecchhhhhc--CCCCCCcchhhhhhchHHHHHHHHH
Q 039605 267 TAEDAIVKLTREIVPGMIVAGMEVAEID--GAPRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 267 ~g~~~vv~~~~~~~pg~~~aG~~~~~~~--g~~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
. ...+.+++++..|++|++||++...+ |.....+.|..+..+|+.||..++.
T Consensus 255 ~-gi~vd~~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g 308 (396)
T PRK09754 255 N-GIVIDEACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLG 308 (396)
T ss_pred C-CEEECCCCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcC
Confidence 3 34566788889999999999985432 2222234567778999999999874
No 130
>PTZ00367 squalene epoxidase; Provisional
Probab=99.27 E-value=1.2e-10 Score=117.67 Aligned_cols=159 Identities=23% Similarity=0.260 Sum_probs=97.9
Q ss_pred HHHHHhHhhcccCCCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCC--CCCCcceeecchHHHHHHHcCCcccc-
Q 039605 91 RETTRRYMTDMITHADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVS--PGGASGSVVRKPAHLFLDELGIDYDE- 167 (352)
Q Consensus 91 ~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~--~GG~~~~~~~~~~~~~l~~~Gi~~~~- 167 (352)
+.+.+...+.+..+.++||+|||||++|+++|+.|+++ |++|+|+|+... +....+..+.....+.|+++|+.-..
T Consensus 18 ~~~~~~~~~~~~~~~~~dViIVGaGiaGlalA~aLar~-G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~ 96 (567)
T PTZ00367 18 RILSRLRFKPARTNYDYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAE 96 (567)
T ss_pred HHHHHHccCccccccCccEEEECCCHHHHHHHHHHHhc-CCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHh
Confidence 33443333334445689999999999999999999999 999999999752 21112234555667778887763110
Q ss_pred --------------CCCe----------EEEechHHHHHHHHHHH--HcCCCcEEEccceeEEEEEeCC----EEEEEEE
Q 039605 168 --------------QDNY----------VVIKHAALFTSTIMSKL--LARPNVKLFNAVAAEDLIVKGN----RVGGIVT 217 (352)
Q Consensus 168 --------------~~~~----------~~~~~~~~~~~~L~~~~--~~~~gv~i~~~t~v~~l~~~~g----~v~gv~~ 217 (352)
.+.. ....+..++.+.|.+.+ ...++++++.. .+++++.+++ ++.++..
T Consensus 97 ~i~~~~~~~~v~~~~G~~~~i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~-~v~~l~~~~~~~~~~v~gV~~ 175 (567)
T PTZ00367 97 GIGMPCFGYVVFDHKGKQVKLPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEG-TVNSLLEEGPGFSERAYGVEY 175 (567)
T ss_pred hcCcceeeeEEEECCCCEEEecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEe-EEEEeccccCccCCeeEEEEE
Confidence 0100 01124456666677766 34578999755 7888876654 3677765
Q ss_pred cccc-ee-------ccCC---CCCCCCCeEEEeCEEEEccCCCCC
Q 039605 218 NWAL-VS-------MNHD---SQSCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 218 ~~g~-~~-------~~~~---~~~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
..+. .+ .+.. +-..++..++.||.||.|+|.+|.
T Consensus 176 ~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~ 220 (567)
T PTZ00367 176 TEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSK 220 (567)
T ss_pred ecCCcccccccccccccccccccccccceEEEeCEEEECCCcchH
Confidence 3210 00 0000 000012468999999999998874
No 131
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.26 E-value=2.1e-11 Score=122.62 Aligned_cols=136 Identities=25% Similarity=0.393 Sum_probs=100.5
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC-------cceee---------------------------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA-------SGSVV--------------------------- 150 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~-------~~~~~--------------------------- 150 (352)
.++||||||+|.|||.||+.+++. |++|+||||....+|. .+..+
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~-g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~d 83 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEA-GLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGD 83 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhc-CCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCC
Confidence 478999999999999999999999 9999999998766543 00000
Q ss_pred ----------cchHHHHHHHcCCccccCCC--e--------------EE-EechHHHHHHHHHHHHcCCCcEEEccceeE
Q 039605 151 ----------RKPAHLFLDELGIDYDEQDN--Y--------------VV-IKHAALFTSTIMSKLLARPNVKLFNAVAAE 203 (352)
Q Consensus 151 ----------~~~~~~~l~~~Gi~~~~~~~--~--------------~~-~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~ 203 (352)
....+.||+++|.+|.+... . .. ......+...|.+++.+..+++++.+..+.
T Consensus 84 qd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~ 163 (562)
T COG1053 84 QDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVL 163 (562)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhh
Confidence 01135788999998865421 0 00 112345778888888876788999999999
Q ss_pred EEEEeCCE-EEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 204 DLIVKGNR-VGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 204 ~l~~~~g~-v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
+|+.++++ |.|+...+ ..+ ++...+++|.||+|||+.+
T Consensus 164 ~l~~~~~~~v~Gvv~~~------~~~---g~~~~~~akavilaTGG~g 202 (562)
T COG1053 164 DLLVDDGGGVAGVVARD------LRT---GELYVFRAKAVILATGGAG 202 (562)
T ss_pred hheecCCCcEEEEEEEE------ecC---CcEEEEecCcEEEccCCce
Confidence 99988654 88887643 222 3567889999999999876
No 132
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.26 E-value=2.1e-10 Score=113.56 Aligned_cols=159 Identities=12% Similarity=0.135 Sum_probs=110.2
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-.++|||||..|+..|..|++. |.+|+|||+.+.+.. ....++...+.+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~il~------------------------------~~d~~~~~~~~~ 215 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGL-GSETHLVIRHERVLR------------------------------SFDSMISETITE 215 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCCc------------------------------ccCHHHHHHHHH
Confidence 3799999999999999999999 999999998864321 012334445555
Q ss_pred HHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcccccc-
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDM- 265 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~- 265 (352)
.+. +.|++++.++.++++..+++....+.+.++ ...+.+|.||+|+|..+.....++. ..++..
T Consensus 216 ~l~-~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g-------------~~~i~~D~vi~a~G~~pn~~~l~l~-~~g~~~~ 280 (450)
T TIGR01421 216 EYE-KEGINVHKLSKPVKVEKTVEGKLVIHFEDG-------------KSIDDVDELIWAIGRKPNTKGLGLE-NVGIKLN 280 (450)
T ss_pred HHH-HcCCEEEcCCEEEEEEEeCCceEEEEECCC-------------cEEEEcCEEEEeeCCCcCcccCCcc-ccCcEEC
Confidence 554 679999999999999865433223443221 2579999999999976544321111 122332
Q ss_pred ccccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHH
Q 039605 266 NTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLAL 318 (352)
Q Consensus 266 ~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~ 318 (352)
..+...+.++.++..|++|++||+.... . ....+..+|+.+|+.|+
T Consensus 281 ~~G~i~vd~~~~T~~p~IyAiGD~~~~~----~---~~~~A~~~g~~aa~~i~ 326 (450)
T TIGR01421 281 EKGQIIVDEYQNTNVPGIYALGDVVGKV----E---LTPVAIAAGRKLSERLF 326 (450)
T ss_pred CCCcEEeCCCCcCCCCCEEEEEecCCCc----c---cHHHHHHHHHHHHHHHh
Confidence 2455666678888999999999998432 1 23345788999999886
No 133
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.26 E-value=2.9e-10 Score=112.85 Aligned_cols=161 Identities=15% Similarity=0.173 Sum_probs=111.5
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
.+++|||+|..|+.+|..|++. |.+|+++|+.+.+.. ....++...+.+
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~l~------------------------------~~~~~~~~~~~~ 219 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASL-GSKVTVIEMLDRILP------------------------------GEDAEVSKVVAK 219 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCCCCC------------------------------CCCHHHHHHHHH
Confidence 4799999999999999999999 999999999864321 011333344455
Q ss_pred HHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCccccccc
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDMN 266 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~~ 266 (352)
.+. +.|++++.++.+.++..+++++. +...++ +..++.+|.||+|+|..+....... ...++..+
T Consensus 220 ~l~-~~gi~i~~~~~v~~i~~~~~~v~-v~~~~g------------~~~~i~~D~vi~a~G~~p~~~~l~~-~~~gl~~~ 284 (461)
T TIGR01350 220 ALK-KKGVKILTNTKVTAVEKNDDQVV-YENKGG------------ETETLTGEKVLVAVGRKPNTEGLGL-ENLGVELD 284 (461)
T ss_pred HHH-HcCCEEEeCCEEEEEEEeCCEEE-EEEeCC------------cEEEEEeCEEEEecCCcccCCCCCc-HhhCceEC
Confidence 554 56999999999999987766653 333221 2257999999999997654321011 11122222
Q ss_pred -cccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHH
Q 039605 267 -TAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKS 320 (352)
Q Consensus 267 -~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~ 320 (352)
.+...+.++.++..|++|++||+.... +....++.+|..+|..|...
T Consensus 285 ~~g~i~vd~~l~t~~~~IyaiGD~~~~~-------~~~~~A~~~g~~aa~~i~~~ 332 (461)
T TIGR01350 285 ERGRIVVDEYMRTNVPGIYAIGDVIGGP-------MLAHVASHEGIVAAENIAGK 332 (461)
T ss_pred CCCcEeeCCCcccCCCCEEEeeecCCCc-------ccHHHHHHHHHHHHHHHcCC
Confidence 355566677888899999999997431 23445678999999998754
No 134
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.26 E-value=9.5e-11 Score=123.61 Aligned_cols=123 Identities=11% Similarity=0.078 Sum_probs=71.2
Q ss_pred CCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCC----CCCCCCeEEEeCEEEEccCCCCCCCCCCCCCccccccc-
Q 039605 192 PNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDS----QSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDMN- 266 (352)
Q Consensus 192 ~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~----~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~~- 266 (352)
.|+++++.+.+.++.. ++++.......+. .+..+ -..++..++.+|.||+|+|....... ....++..+
T Consensus 720 eGVe~~~~~~p~~I~~-dG~l~~~~~~lg~--~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntel---le~~GL~ld~ 793 (1019)
T PRK09853 720 DGVEFKELLNPESFDA-DGTLTCRVMKLGE--PDESGRRRPVETGETVTLEADTVITAIGEQVDTEL---LKANGIPLDK 793 (1019)
T ss_pred cCCEEEeCCceEEEEc-CCcEEEEEEEeec--ccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhH---HHhcCccccC
Confidence 4777777777777743 3443322111000 00000 00124578999999999997643321 111122222
Q ss_pred cccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCCCCCC
Q 039605 267 TAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNAM 327 (352)
Q Consensus 267 ~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~~~~~ 327 (352)
.+...+.+..++..|++|++||++... . +...++.+|+.||..|+..+.....-
T Consensus 794 ~G~I~VDetlqTs~pgVFAaGD~a~Gp----~---tvv~Ai~qGr~AA~nI~~~~~~~~~~ 847 (1019)
T PRK09853 794 KGWPVVDANGETSLTNVYMIGDVQRGP----S---TIVAAIADARRAADAILSREGIRSHQ 847 (1019)
T ss_pred CCCEEeCCCcccCCCCEEEEeccccCc----h---HHHHHHHHHHHHHHHHhhhcCCCccc
Confidence 244444456677899999999997421 1 23456889999999999887644443
No 135
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.26 E-value=1.4e-10 Score=122.76 Aligned_cols=40 Identities=38% Similarity=0.683 Sum_probs=37.1
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCc
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGAS 146 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~ 146 (352)
..+|+||||||||++||+.|++. |++|+|+|+.+.+||..
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~-G~~VTV~Ek~~~lGG~l 576 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARA-GHPVTVFEKKEKPGGVV 576 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCeEEEEecccccCcee
Confidence 57999999999999999999999 99999999998888763
No 136
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.25 E-value=2.5e-10 Score=113.53 Aligned_cols=162 Identities=20% Similarity=0.261 Sum_probs=111.1
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-.++|||+|..|+.+|..|++. |.+|+|+|+.+.+.. ....+....+.+
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~-G~~Vtlv~~~~~~l~------------------------------~~d~~~~~~l~~ 221 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNY-GVDVTIVEFLDRALP------------------------------NEDAEVSKEIAK 221 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCcCC------------------------------ccCHHHHHHHHH
Confidence 3799999999999999999999 999999998764311 011334445555
Q ss_pred HHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcccccc-
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDM- 265 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~- 265 (352)
.+. +.|++++.++.+.++..+++.+. +.+.. .+ ++..++.+|.||+|+|..+.....+.. ..++..
T Consensus 222 ~l~-~~gV~i~~~~~v~~i~~~~~~~~-v~~~~-------~~---g~~~~i~~D~vi~a~G~~pn~~~l~l~-~~g~~~~ 288 (466)
T PRK07818 222 QYK-KLGVKILTGTKVESIDDNGSKVT-VTVSK-------KD---GKAQELEADKVLQAIGFAPRVEGYGLE-KTGVALT 288 (466)
T ss_pred HHH-HCCCEEEECCEEEEEEEeCCeEE-EEEEe-------cC---CCeEEEEeCEEEECcCcccCCCCCCch-hcCcEEC
Confidence 555 56999999999999986655432 33320 01 123579999999999976543221111 112222
Q ss_pred ccccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHH
Q 039605 266 NTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 266 ~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
+.+...+.+++++..|++|++||+.... +....++.+|..||..|..
T Consensus 289 ~~g~i~vd~~~~Ts~p~IyAiGD~~~~~-------~l~~~A~~~g~~aa~~i~g 335 (466)
T PRK07818 289 DRGAIAIDDYMRTNVPHIYAIGDVTAKL-------QLAHVAEAQGVVAAETIAG 335 (466)
T ss_pred CCCcEeeCCCcccCCCCEEEEeecCCCc-------ccHhHHHHHHHHHHHHHcC
Confidence 3455566688889999999999997431 2344567899999999863
No 137
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.25 E-value=1.4e-10 Score=117.74 Aligned_cols=40 Identities=33% Similarity=0.610 Sum_probs=36.8
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
.++||||||+|++|+++|+.|++. |++|+||||....||+
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~-G~~v~llEk~~~~gG~ 45 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHR-GLSTVVVEKAPHYGGS 45 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCCCCcc
Confidence 478999999999999999999999 9999999998877664
No 138
>PRK12831 putative oxidoreductase; Provisional
Probab=99.24 E-value=2e-10 Score=114.07 Aligned_cols=171 Identities=18% Similarity=0.118 Sum_probs=113.1
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-.|+|||+|..|+-+|..|.+. |.+|+||++..... ++ ....+ ++
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~-Ga~Vtlv~r~~~~~-------------------m~----------a~~~e-----~~ 326 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRL-GAEVHIVYRRSEEE-------------------LP----------ARVEE-----VH 326 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCEEEEEeecCccc-------------------CC----------CCHHH-----HH
Confidence 4799999999999999999999 99999999764210 00 00111 12
Q ss_pred HHHcCCCcEEEccceeEEEEEe-CCEEEEEEEcccce-eccCCCCC------CCCCeEEEeCEEEEccCCCCCCCCCCCC
Q 039605 187 KLLARPNVKLFNAVAAEDLIVK-GNRVGGIVTNWALV-SMNHDSQS------CMDPNVMEAKVVVSSCGHDGPFGATGVR 258 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~g~~-~~~~~~~~------~g~~~~i~A~~VIlAtG~~~~~~~~g~~ 258 (352)
.+. +.|+++++++.+.++..+ ++++.++.+..-.. ..+ .++. +++..++.+|.||+|+|..+..... .
T Consensus 327 ~a~-~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d-~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~--~ 402 (464)
T PRK12831 327 HAK-EEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPD-ASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLIS--S 402 (464)
T ss_pred HHH-HcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcC-CCCCccceecCCceEEEECCEEEECCCCCCChhhh--c
Confidence 233 569999999999999864 56788877632100 000 0111 2344579999999999976443211 1
Q ss_pred Cccccccc-cccceeecc-cccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCC
Q 039605 259 GMKALDMN-TAEDAIVKL-TREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 323 (352)
Q Consensus 259 g~~~~~~~-~g~~~vv~~-~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~ 323 (352)
...++..+ .+...+.++ ..++.|++|++||+.... ..+..++.+|++||..|.+||.+
T Consensus 403 ~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~-------~~v~~Ai~~G~~AA~~I~~~L~~ 462 (464)
T PRK12831 403 TTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGA-------ATVILAMGAGKKAAKAIDEYLSK 462 (464)
T ss_pred ccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCc-------hHHHHHHHHHHHHHHHHHHHhcC
Confidence 11223222 344444555 678999999999997421 13456689999999999999965
No 139
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.24 E-value=3.3e-10 Score=112.60 Aligned_cols=162 Identities=16% Similarity=0.195 Sum_probs=110.8
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-+++|||+|..|+.+|..|++. |.+|+|+|+.+.+.. ....++...+.+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~------------------------------~~d~~~~~~l~~ 215 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARL-GSEVTILQRSDRLLP------------------------------REEPEISAAVEE 215 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCcCCC------------------------------ccCHHHHHHHHH
Confidence 4799999999999999999999 999999999864311 001233344444
Q ss_pred HHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcccccc-
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDM- 265 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~- 265 (352)
.+. +.|+++++++++.++..+++.+ .+.+.. . ++..++.+|.||+|+|..+.....++. ..++..
T Consensus 216 ~l~-~~gV~i~~~~~V~~i~~~~~~~-~v~~~~-------~----~~~~~i~~D~ViiA~G~~p~~~~l~l~-~~g~~~~ 281 (463)
T TIGR02053 216 ALA-EEGIEVVTSAQVKAVSVRGGGK-IITVEK-------P----GGQGEVEADELLVATGRRPNTDGLGLE-KAGVKLD 281 (463)
T ss_pred HHH-HcCCEEEcCcEEEEEEEcCCEE-EEEEEe-------C----CCceEEEeCEEEEeECCCcCCCCCCcc-ccCCEEC
Confidence 444 6799999999999998765432 233321 0 123679999999999976543311121 122332
Q ss_pred ccccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHH
Q 039605 266 NTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKS 320 (352)
Q Consensus 266 ~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~ 320 (352)
..+...+.+++++..|++|++||+... +. ....+..+|+.||..|+..
T Consensus 282 ~~G~i~vd~~~~Ts~~~VyAiGD~~~~----~~---~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 282 ERGGILVDETLRTSNPGIYAAGDVTGG----LQ---LEYVAAKEGVVAAENALGG 329 (463)
T ss_pred CCCcEeECCCccCCCCCEEEeeecCCC----cc---cHhHHHHHHHHHHHHhcCC
Confidence 245566668889999999999999853 12 2344578899999998743
No 140
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.24 E-value=5.7e-12 Score=110.85 Aligned_cols=130 Identities=19% Similarity=0.312 Sum_probs=72.9
Q ss_pred EEECCcHHHHHHHHHHhcCCCCc-EEEEeccCCCCCCcceeecchHH---HHH-HHcCCc------c------ccCCCeE
Q 039605 110 VVVGAGSAGLSCAYEISKNPNVQ-VAIIEQSVSPGGASGSVVRKPAH---LFL-DELGID------Y------DEQDNYV 172 (352)
Q Consensus 110 vIIGgG~aGl~aA~~la~~~G~k-V~viEk~~~~GG~~~~~~~~~~~---~~l-~~~Gi~------~------~~~~~~~ 172 (352)
+|||||++||++|+.|.+. |++ |+|||+++.+||.+......... ..+ ..++++ + .....+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~-g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER-GIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF- 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT-T---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS-
T ss_pred CEECcCHHHHHHHHHHHhC-CCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc-
Confidence 6999999999999999999 999 99999999999874321100000 000 001110 0 000111
Q ss_pred EEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCC
Q 039605 173 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPF 252 (352)
Q Consensus 173 ~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~ 252 (352)
....++.+. ++.+.++.+++++++++|+++..++++ +-+.+.+ ..+++|+.||+|||..+.+
T Consensus 79 --~~~~~v~~y-l~~~~~~~~l~i~~~~~V~~v~~~~~~-w~v~~~~--------------~~~~~a~~VVlAtG~~~~p 140 (203)
T PF13738_consen 79 --PSGEEVLDY-LQEYAERFGLEIRFNTRVESVRRDGDG-WTVTTRD--------------GRTIRADRVVLATGHYSHP 140 (203)
T ss_dssp --EBHHHHHHH-HHHHHHHTTGGEETS--EEEEEEETTT-EEEEETT--------------S-EEEEEEEEE---SSCSB
T ss_pred --CCHHHHHHH-HHHHHhhcCcccccCCEEEEEEEeccE-EEEEEEe--------------cceeeeeeEEEeeeccCCC
Confidence 233445444 344444668889999999999999877 4466643 2589999999999987655
Q ss_pred CCCCCCC
Q 039605 253 GATGVRG 259 (352)
Q Consensus 253 ~~~g~~g 259 (352)
..+.+++
T Consensus 141 ~~p~~~g 147 (203)
T PF13738_consen 141 RIPDIPG 147 (203)
T ss_dssp ---S-TT
T ss_pred Ccccccc
Confidence 5544554
No 141
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.24 E-value=5.4e-10 Score=111.01 Aligned_cols=161 Identities=16% Similarity=0.127 Sum_probs=112.1
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-.++|||+|..|+.+|..|++. |.+|++||+.+.+.. ....++...+.+
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~------------------------------~~~~~~~~~l~~ 221 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASL-GAEVTIVEALPRILP------------------------------GEDKEISKLAER 221 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCCcCC------------------------------cCCHHHHHHHHH
Confidence 3799999999999999999999 999999999764321 001333344444
Q ss_pred HHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCccccccc
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDMN 266 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~~ 266 (352)
.+. +.|++++.++++.++..+++.+. +.+.++ ++..++.+|.||+|+|..+.....++. ..++..+
T Consensus 222 ~l~-~~gV~i~~~~~V~~i~~~~~~v~-v~~~~g-----------g~~~~i~~D~vi~a~G~~p~~~~l~l~-~~gl~~~ 287 (462)
T PRK06416 222 ALK-KRGIKIKTGAKAKKVEQTDDGVT-VTLEDG-----------GKEETLEADYVLVAVGRRPNTENLGLE-ELGVKTD 287 (462)
T ss_pred HHH-HcCCEEEeCCEEEEEEEeCCEEE-EEEEeC-----------CeeEEEEeCEEEEeeCCccCCCCCCch-hcCCeec
Confidence 444 67999999999999987666442 333221 123579999999999976544322111 1223333
Q ss_pred cccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHH
Q 039605 267 TAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 267 ~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
.+...+.+++++..|++|++||+.... +....+..+|+.+|..|..
T Consensus 288 ~g~i~vd~~~~t~~~~VyAiGD~~~~~-------~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 288 RGFIEVDEQLRTNVPNIYAIGDIVGGP-------MLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred CCEEeECCCCccCCCCEEEeeecCCCc-------chHHHHHHHHHHHHHHHcC
Confidence 566666678889999999999997421 2344567899999999875
No 142
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.23 E-value=7.7e-11 Score=116.11 Aligned_cols=142 Identities=19% Similarity=0.239 Sum_probs=86.6
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCc-EEEEeccCCCCCCccee-e---cchHHHHHHHc-CCccccCCCeEEEechH
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQ-VAIIEQSVSPGGASGSV-V---RKPAHLFLDEL-GIDYDEQDNYVVIKHAA 178 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~k-V~viEk~~~~GG~~~~~-~---~~~~~~~l~~~-Gi~~~~~~~~~~~~~~~ 178 (352)
.++||+|||||++|+++|++|.++ |.+ ++|+||+..+||++... + ....-.|+..+ +.++.+...+.......
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~-g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~ 85 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQA-GVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIK 85 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHc-CCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHH
Confidence 478999999999999999999999 998 99999999999984331 1 11111222221 22332122222222234
Q ss_pred HHHHHHHHHHHcCCCcEEEccceeEEEEEeC-CEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCC
Q 039605 179 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-NRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGV 257 (352)
Q Consensus 179 ~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~-g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~ 257 (352)
++....++++.....+.+. +.|.....++ +..+-|.+.++ ...++.+|.||+|||.++.+..|.+
T Consensus 86 ~y~~~~~~~y~~~~~i~~~--~~v~~~~~~~~~~~w~V~~~~~------------~~~~~~a~~vV~ATG~~~~P~iP~~ 151 (443)
T COG2072 86 DYIKDYLEKYGLRFQIRFN--TRVEVADWDEDTKRWTVTTSDG------------GTGELTADFVVVATGHLSEPYIPDF 151 (443)
T ss_pred HHHHHHHHHcCceeEEEcc--cceEEEEecCCCCeEEEEEcCC------------CeeeEecCEEEEeecCCCCCCCCCC
Confidence 5555555555444444444 4444455543 33455666442 1122889999999999887666655
Q ss_pred CCcc
Q 039605 258 RGMK 261 (352)
Q Consensus 258 ~g~~ 261 (352)
+|..
T Consensus 152 ~G~~ 155 (443)
T COG2072 152 AGLD 155 (443)
T ss_pred CCcc
Confidence 5543
No 143
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.23 E-value=2.3e-10 Score=113.28 Aligned_cols=142 Identities=14% Similarity=0.108 Sum_probs=88.6
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeec----------------chHHHHHHH------c--
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVR----------------KPAHLFLDE------L-- 161 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~----------------~~~~~~l~~------~-- 161 (352)
..+|+|||||++||+||.+|.+. |++|+|+|++..+||.|...-. ....+-|.. +
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~-G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRRE-GHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhc-CCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 46899999999999999999999 9999999999999998644211 011111110 0
Q ss_pred -CCccccC-----CCeEEEechHHHHHHHHHHHHcCCCcE--EEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCC
Q 039605 162 -GIDYDEQ-----DNYVVIKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMD 233 (352)
Q Consensus 162 -Gi~~~~~-----~~~~~~~~~~~~~~~L~~~~~~~~gv~--i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~ 233 (352)
.+++... ..........++.+.|.+.+. +.++. +.++++|+++...++++ -|.+.++ + +.
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~-~fgl~~~I~~~t~V~~V~~~~~~w-~V~~~~~-------~---~~ 156 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAR-EFKIEEMVRFETEVVRVEPVDGKW-RVQSKNS-------G---GF 156 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHH-HcCCcceEEecCEEEEEeecCCeE-EEEEEcC-------C---Cc
Confidence 1121110 000111233555555554443 56777 88999999998776654 3444221 0 11
Q ss_pred CeEEEeCEEEEccCCCCCCCCCCCCCc
Q 039605 234 PNVMEAKVVVSSCGHDGPFGATGVRGM 260 (352)
Q Consensus 234 ~~~i~A~~VIlAtG~~~~~~~~g~~g~ 260 (352)
..+..+|.||+|+|....+..|.++|.
T Consensus 157 ~~~~~~d~VIvAtG~~~~P~~P~ipG~ 183 (461)
T PLN02172 157 SKDEIFDAVVVCNGHYTEPNVAHIPGI 183 (461)
T ss_pred eEEEEcCEEEEeccCCCCCcCCCCCCc
Confidence 235789999999998765555555554
No 144
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.22 E-value=2.4e-10 Score=111.37 Aligned_cols=133 Identities=17% Similarity=0.283 Sum_probs=80.8
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccc--------------------
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYD-------------------- 166 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~-------------------- 166 (352)
+||+||||||+|++||+.|+++ |++|+||||....+..+...+. ..+++++|++.+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~-G~~V~llE~~~~~~~~cg~~i~---~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~ 76 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA-GIQTFLLERKPDNAKPCGGAIP---LCMVDEFALPRDIIDRRVTKMKMISPSNIAVD 76 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-CCcEEEEecCCCCCCCcccccc---HhhHhhccCchhHHHhhhceeEEecCCceEEE
Confidence 4899999999999999999999 9999999997554332222221 122333322100
Q ss_pred --c---CCCeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEe--CCEEEEEEEcccceeccCCCCCCCCCeEEEe
Q 039605 167 --E---QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GNRVGGIVTNWALVSMNHDSQSCMDPNVMEA 239 (352)
Q Consensus 167 --~---~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A 239 (352)
. ...+....+...+.+.|.+++. +.|++++.++ +.++... .+...++..... + .+...++..+++|
T Consensus 77 ~~~~~~~~~~~~~v~R~~~d~~L~~~a~-~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~----~-~~~~~g~~~~i~a 149 (398)
T TIGR02028 77 IGRTLKEHEYIGMLRREVLDSFLRRRAA-DAGATLINGL-VTKLSLPADADDPYTLHYISS----D-SGGPSGTRCTLEV 149 (398)
T ss_pred eccCCCCCCceeeeeHHHHHHHHHHHHH-HCCcEEEcce-EEEEEeccCCCceEEEEEeec----c-ccccCCCccEEEe
Confidence 0 0112223445666677777776 5799998884 6666532 233334443210 0 0000123468999
Q ss_pred CEEEEccCCCC
Q 039605 240 KVVVSSCGHDG 250 (352)
Q Consensus 240 ~~VIlAtG~~~ 250 (352)
+.||.|+|..+
T Consensus 150 ~~VIgADG~~S 160 (398)
T TIGR02028 150 DAVIGADGANS 160 (398)
T ss_pred CEEEECCCcch
Confidence 99999999766
No 145
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.22 E-value=2.4e-10 Score=110.94 Aligned_cols=130 Identities=18% Similarity=0.329 Sum_probs=81.9
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEecc-CCCCCCcceeecchHHHHHHHcCCc------------c--------
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQS-VSPGGASGSVVRKPAHLFLDELGID------------Y-------- 165 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~-~~~GG~~~~~~~~~~~~~l~~~Gi~------------~-------- 165 (352)
|||+||||||+|+++|+.|++. |++|+|||+. +...- +...+. .+.+++++++ +
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~-G~~V~l~E~~~~~~~~-cg~~i~---~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~ 75 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA-GIETILLERALSNIKP-CGGAIP---PCLIEEFDIPDSLIDRRVTQMRMISPSRVPI 75 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECCCCCcCc-CcCCcC---HhhhhhcCCchHHHhhhcceeEEEcCCCcee
Confidence 6999999999999999999999 9999999997 32211 111111 1122222221 0
Q ss_pred ----ccCCCeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCE
Q 039605 166 ----DEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKV 241 (352)
Q Consensus 166 ----~~~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~ 241 (352)
.....+....+...+.+.|.+++. +.|++++.. .++++..+++.+ .+.+.++ ..+..++..+++|+.
T Consensus 76 ~~~~~~~~~~~~~~~r~~fd~~L~~~a~-~~G~~v~~~-~v~~v~~~~~~~-~v~~~~~------~~~~~~~~~~i~a~~ 146 (388)
T TIGR02023 76 KVTIPSEDGYVGMVRREVFDSYLRERAQ-KAGAELIHG-LFLKLERDRDGV-TLTYRTP------KKGAGGEKGSVEADV 146 (388)
T ss_pred eeccCCCCCceEeeeHHHHHHHHHHHHH-hCCCEEEee-EEEEEEEcCCeE-EEEEEec------cccCCCcceEEEeCE
Confidence 000113223456677788888876 569999766 688887776655 3444221 000011346899999
Q ss_pred EEEccCCCC
Q 039605 242 VVSSCGHDG 250 (352)
Q Consensus 242 VIlAtG~~~ 250 (352)
||.|+|.++
T Consensus 147 VI~AdG~~S 155 (388)
T TIGR02023 147 VIGADGANS 155 (388)
T ss_pred EEECCCCCc
Confidence 999999876
No 146
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.22 E-value=4.3e-10 Score=109.09 Aligned_cols=132 Identities=19% Similarity=0.241 Sum_probs=87.3
Q ss_pred CCccEEEECCcHHHHHHHHHHhcC--CCCcEEEEeccCCC-----CC-CcceeecchHHHHHHHcCCccc----------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKN--PNVQVAIIEQSVSP-----GG-ASGSVVRKPAHLFLDELGIDYD---------- 166 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~--~G~kV~viEk~~~~-----GG-~~~~~~~~~~~~~l~~~Gi~~~---------- 166 (352)
..+||+|||||++|+++|+.|+++ .|++|+||||.... +. +....+.....+.++.+|+.-.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~ 81 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITH 81 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccE
Confidence 368999999999999999999874 29999999995211 11 1223333334455555554210
Q ss_pred ----cCC---------------CeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCC
Q 039605 167 ----EQD---------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHD 227 (352)
Q Consensus 167 ----~~~---------------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~ 227 (352)
... .+....+..++.+.|.+.+.+..|++++++++++++..+++.+. +.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~-v~~~~-------- 152 (395)
T PRK05732 82 IHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVR-VTLDD-------- 152 (395)
T ss_pred EEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEE-EEECC--------
Confidence 000 00112233456677777777667899999999999987766553 44432
Q ss_pred CCCCCCCeEEEeCEEEEccCCCCC
Q 039605 228 SQSCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 228 ~~~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
..++.+|.||.|+|.++.
T Consensus 153 ------g~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 153 ------GETLTGRLLVAADGSHSA 170 (395)
T ss_pred ------CCEEEeCEEEEecCCChh
Confidence 247999999999998763
No 147
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.21 E-value=3e-10 Score=112.21 Aligned_cols=135 Identities=17% Similarity=0.273 Sum_probs=81.0
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCc--------------------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGID-------------------- 164 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~-------------------- 164 (352)
.+|||+||||||+|+++|+.|+++ |++|+||||.....-.+...+. ..+++++|++
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~-G~~VlllEr~~~~~k~cgg~i~---~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~ 113 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKG-GIETFLIERKLDNAKPCGGAIP---LCMVGEFDLPLDIIDRKVTKMKMISPSNVA 113 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCCCCCcccccc---HhHHhhhcCcHHHHHHHhhhheEecCCceE
Confidence 368999999999999999999999 9999999997432111111111 1122222211
Q ss_pred --ccc---CCCeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeC--CEEEEEEEcccceeccCCCCCCCCCeEE
Q 039605 165 --YDE---QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--NRVGGIVTNWALVSMNHDSQSCMDPNVM 237 (352)
Q Consensus 165 --~~~---~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~--g~v~gv~~~~g~~~~~~~~~~~g~~~~i 237 (352)
+.. ...+....+...+.+.|.+++. +.|++++.+ .+.++..++ +....+.+... . .+...++..++
T Consensus 114 v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~-~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~----~-~~~~~g~~~~v 186 (450)
T PLN00093 114 VDIGKTLKPHEYIGMVRREVLDSFLRERAQ-SNGATLING-LFTRIDVPKDPNGPYVIHYTSY----D-SGSGAGTPKTL 186 (450)
T ss_pred EEecccCCCCCeEEEecHHHHHHHHHHHHH-HCCCEEEec-eEEEEEeccCCCCcEEEEEEec----c-ccccCCCccEE
Confidence 000 0123334566778788888876 569999876 577766432 22223433210 0 00001234689
Q ss_pred EeCEEEEccCCCC
Q 039605 238 EAKVVVSSCGHDG 250 (352)
Q Consensus 238 ~A~~VIlAtG~~~ 250 (352)
+|+.||.|+|..+
T Consensus 187 ~a~~VIgADG~~S 199 (450)
T PLN00093 187 EVDAVIGADGANS 199 (450)
T ss_pred EeCEEEEcCCcch
Confidence 9999999999765
No 148
>PRK06847 hypothetical protein; Provisional
Probab=99.21 E-value=4.2e-10 Score=108.50 Aligned_cols=129 Identities=16% Similarity=0.171 Sum_probs=86.6
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCC-CcceeecchHHHHHHHcCCc---------ccc------CC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGG-ASGSVVRKPAHLFLDELGID---------YDE------QD 169 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG-~~~~~~~~~~~~~l~~~Gi~---------~~~------~~ 169 (352)
..||+|||||++|+++|+.|++. |++|+|+|+.+.... +....+.....+.++++|+. ... .+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g 82 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA-GIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG 82 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence 45999999999999999999999 999999999865321 12233333444555555431 110 00
Q ss_pred CeE----------------EEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCC
Q 039605 170 NYV----------------VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMD 233 (352)
Q Consensus 170 ~~~----------------~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~ 233 (352)
... ...+..++.+.|.+.+. +.|++++++++++++..+++.+ .+.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~~-~v~~~~-------------- 146 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAAR-AAGADVRLGTTVTAIEQDDDGV-TVTFSD-------------- 146 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHH-HhCCEEEeCCEEEEEEEcCCEE-EEEEcC--------------
Confidence 000 01123455667777665 5699999999999998776654 344432
Q ss_pred CeEEEeCEEEEccCCCCC
Q 039605 234 PNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 234 ~~~i~A~~VIlAtG~~~~ 251 (352)
..++.+|.||.|+|.++.
T Consensus 147 g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 147 GTTGRYDLVVGADGLYSK 164 (375)
T ss_pred CCEEEcCEEEECcCCCcc
Confidence 247999999999998874
No 149
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.20 E-value=7.5e-11 Score=109.83 Aligned_cols=135 Identities=26% Similarity=0.357 Sum_probs=96.4
Q ss_pred CCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCC-CCCCcceeecchHHHHHHHcCCccc-------cCCCeE---
Q 039605 104 HADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVS-PGGASGSVVRKPAHLFLDELGIDYD-------EQDNYV--- 172 (352)
Q Consensus 104 ~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~-~GG~~~~~~~~~~~~~l~~~Gi~~~-------~~~~~~--- 172 (352)
...+||+|||+|.+|.+.|+.|++. |.||.||||.-. +---.+..++......|.++|+.-. +...|.
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kd-GRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk 121 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKD-GRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFK 121 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhC-CcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEe
Confidence 3578999999999999999999999 999999999632 0000111222223444555554210 100111
Q ss_pred --------------------EEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCC
Q 039605 173 --------------------VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCM 232 (352)
Q Consensus 173 --------------------~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g 232 (352)
...|...+.+.|++++...+|+++..+ .|.+|+.+++.|.||..++. .+
T Consensus 122 ~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLlee~gvvkGV~yk~k----------~g 190 (509)
T KOG1298|consen 122 DGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLEEEGVVKGVTYKNK----------EG 190 (509)
T ss_pred CCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHhccCeEEeEEEecC----------CC
Confidence 134566788999999999999999988 68999999999999988652 23
Q ss_pred CCeEEEeCEEEEccCCCC
Q 039605 233 DPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 233 ~~~~i~A~~VIlAtG~~~ 250 (352)
++.+..|...|+|+|.++
T Consensus 191 ee~~~~ApLTvVCDGcfS 208 (509)
T KOG1298|consen 191 EEVEAFAPLTVVCDGCFS 208 (509)
T ss_pred ceEEEecceEEEecchhH
Confidence 457888999999999876
No 150
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.20 E-value=1.9e-10 Score=113.33 Aligned_cols=125 Identities=20% Similarity=0.262 Sum_probs=89.3
Q ss_pred EECCcHHHHHHHHHHhcCCCCcEEEEeccCC--CCCCccee----e----------------------------------
Q 039605 111 VVGAGSAGLSCAYEISKNPNVQVAIIEQSVS--PGGASGSV----V---------------------------------- 150 (352)
Q Consensus 111 IIGgG~aGl~aA~~la~~~G~kV~viEk~~~--~GG~~~~~----~---------------------------------- 150 (352)
|||+|.+|++||+.|++. |++|+||||.+. .||..... .
T Consensus 1 VVG~G~AGl~AA~~Aa~~-Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 79 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRA-GASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNESL 79 (432)
T ss_pred CCcccHHHHHHHHHHHhC-CCcEEEEeCCCCCcCCcCcccccchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHHH
Confidence 799999999999999999 999999999874 34431100 0
Q ss_pred -------cchHHHHHHHcCCccccC--CCeEE-------EechHHHHHHHHHHHHcCCCcEEEccceeEEEEEe--CCEE
Q 039605 151 -------RKPAHLFLDELGIDYDEQ--DNYVV-------IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GNRV 212 (352)
Q Consensus 151 -------~~~~~~~l~~~Gi~~~~~--~~~~~-------~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~--~g~v 212 (352)
.....+|++++|++|... +.+.. ......+...|.+.+. +.|+++++++++++|+.+ ++++
T Consensus 80 ~~~~~~~s~~~i~wl~~~Gv~f~~~~~g~~~~~~~~~~~~~~g~~l~~~L~~~a~-~~Gv~i~~~~~v~~l~~~~~~g~v 158 (432)
T TIGR02485 80 SRLGIGRGSRDLRWAFAHGVHLQPPAAGNLPYSRRTAFLRGGGKALTNALYSSAE-RLGVEIRYGIAVDRIPPEAFDGAH 158 (432)
T ss_pred HHHHHhcchhHHHHHHhCCceeeecCCCCccccCceeeecCCHHHHHHHHHHHHH-HcCCEEEeCCEEEEEEecCCCCeE
Confidence 011347888889887542 11110 1123456677777775 679999999999999987 5788
Q ss_pred EEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 213 GGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 213 ~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
+++.... +..++.+|.||+|||++.
T Consensus 159 ~gv~~~~-------------~~~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 159 DGPLTTV-------------GTHRITTQALVLAAGGLG 183 (432)
T ss_pred EEEEEcC-------------CcEEEEcCEEEEcCCCcc
Confidence 8887632 125799999999999865
No 151
>PRK07588 hypothetical protein; Provisional
Probab=99.20 E-value=4.7e-10 Score=108.94 Aligned_cols=127 Identities=13% Similarity=0.122 Sum_probs=85.3
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCC-CcceeecchHHHHHHHcCCc---------ccc------CCC-
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGG-ASGSVVRKPAHLFLDELGID---------YDE------QDN- 170 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG-~~~~~~~~~~~~~l~~~Gi~---------~~~------~~~- 170 (352)
||+|||||++|+++|+.|+++ |++|+|+||.+.... +....+.....+.++++|+. +.. .+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRY-GHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred eEEEECccHHHHHHHHHHHHC-CCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 799999999999999999999 999999999865432 12222233344555555541 110 000
Q ss_pred ---------------eEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCe
Q 039605 171 ---------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPN 235 (352)
Q Consensus 171 ---------------~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~ 235 (352)
.....+..++.+.|++.+ ..+++++++++++++..+++.+. +.+.+ ..
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~--~~~v~i~~~~~v~~i~~~~~~v~-v~~~~--------------g~ 143 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI--DGQVETIFDDSIATIDEHRDGVR-VTFER--------------GT 143 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhh--hcCeEEEeCCEEeEEEECCCeEE-EEECC--------------CC
Confidence 011233445556666544 34799999999999988777654 44433 24
Q ss_pred EEEeCEEEEccCCCCCC
Q 039605 236 VMEAKVVVSSCGHDGPF 252 (352)
Q Consensus 236 ~i~A~~VIlAtG~~~~~ 252 (352)
++++|.||.|+|.+|..
T Consensus 144 ~~~~d~vIgADG~~S~v 160 (391)
T PRK07588 144 PRDFDLVIGADGLHSHV 160 (391)
T ss_pred EEEeCEEEECCCCCccc
Confidence 68999999999988753
No 152
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.20 E-value=1.3e-09 Score=108.48 Aligned_cols=163 Identities=15% Similarity=0.099 Sum_probs=108.7
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-.++|||+|..|+..|..+++. |.+|+|||+.+.+.. ....+....+.+
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~-G~~Vtlie~~~~il~------------------------------~~d~~~~~~l~~ 223 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRL-GAQVTVVEYLDRICP------------------------------GTDTETAKTLQK 223 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCCCCCC------------------------------CCCHHHHHHHHH
Confidence 4799999999999999999999 999999998764321 011233344555
Q ss_pred HHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCccccccc
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDMN 266 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~~ 266 (352)
.+. +.|++++.++.+.++..+++.+. +.+.. .. +++..++.+|.||+|+|..+.....+.. ..++..+
T Consensus 224 ~l~-~~gV~i~~~~~V~~i~~~~~~v~-v~~~~------~~---~g~~~~i~~D~vi~a~G~~pn~~~l~~~-~~g~~~~ 291 (466)
T PRK06115 224 ALT-KQGMKFKLGSKVTGATAGADGVS-LTLEP------AA---GGAAETLQADYVLVAIGRRPYTQGLGLE-TVGLETD 291 (466)
T ss_pred HHH-hcCCEEEECcEEEEEEEcCCeEE-EEEEE------cC---CCceeEEEeCEEEEccCCccccccCCcc-cccceeC
Confidence 554 56999999999999976554432 22211 00 1134679999999999976443211111 1123333
Q ss_pred cccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHH
Q 039605 267 TAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 267 ~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
.....+.++++++.|++|++||+.... +....+..+|+.||+.|+.
T Consensus 292 ~~G~~vd~~~~Ts~~~IyA~GD~~~~~-------~la~~A~~~g~~aa~~i~~ 337 (466)
T PRK06115 292 KRGMLANDHHRTSVPGVWVIGDVTSGP-------MLAHKAEDEAVACIERIAG 337 (466)
T ss_pred CCCEEECCCeecCCCCEEEeeecCCCc-------ccHHHHHHHHHHHHHHHcC
Confidence 222355678889999999999998531 1233456789999998864
No 153
>PRK11445 putative oxidoreductase; Provisional
Probab=99.20 E-value=5e-10 Score=107.29 Aligned_cols=129 Identities=16% Similarity=0.227 Sum_probs=87.4
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCC--C---CcceeecchHHHHHHHcCCccccC----CC-------
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPG--G---ASGSVVRKPAHLFLDELGIDYDEQ----DN------- 170 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~G--G---~~~~~~~~~~~~~l~~~Gi~~~~~----~~------- 170 (352)
|||+||||||+|+++|+.|++. ++|+|||+.+..+ + .++..+.....+.|+++|+..... ..
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~--~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 79 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK--MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTI 79 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc--CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEe
Confidence 6999999999999999999985 8999999987542 1 133445666778888888742110 00
Q ss_pred ------------eEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEE
Q 039605 171 ------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVME 238 (352)
Q Consensus 171 ------------~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~ 238 (352)
.....+..++.+.|.+. . ..|+++++++.+.++..+++.+. +.... + ++..+++
T Consensus 80 ~~~~~~~~~~~~~~~~i~R~~~~~~L~~~-~-~~gv~v~~~~~v~~i~~~~~~~~-v~~~~--------~---g~~~~i~ 145 (351)
T PRK11445 80 DLANSLTRNYQRSYINIDRHKFDLWLKSL-I-PASVEVYHNSLCRKIWREDDGYH-VIFRA--------D---GWEQHIT 145 (351)
T ss_pred cccccchhhcCCCcccccHHHHHHHHHHH-H-hcCCEEEcCCEEEEEEEcCCEEE-EEEec--------C---CcEEEEE
Confidence 01113344555555553 2 46899999999999987766543 33311 1 1234799
Q ss_pred eCEEEEccCCCCC
Q 039605 239 AKVVVSSCGHDGP 251 (352)
Q Consensus 239 A~~VIlAtG~~~~ 251 (352)
|+.||.|+|..+.
T Consensus 146 a~~vV~AdG~~S~ 158 (351)
T PRK11445 146 ARYLVGADGANSM 158 (351)
T ss_pred eCEEEECCCCCcH
Confidence 9999999998774
No 154
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.19 E-value=3.9e-10 Score=109.64 Aligned_cols=129 Identities=22% Similarity=0.331 Sum_probs=83.7
Q ss_pred CccEEEECCcHHHHHHHHHHhcC-CCCcEEEEeccCCCCCC-c---cee------ecch---------H----HHHHHHc
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKN-PNVQVAIIEQSVSPGGA-S---GSV------VRKP---------A----HLFLDEL 161 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~-~G~kV~viEk~~~~GG~-~---~~~------~~~~---------~----~~~l~~~ 161 (352)
.+||+|||||++|+++|++|+++ +|++|+||||+..++++ + ... .... . .++.+++
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQH 81 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHc
Confidence 47999999999999999999984 48999999998644321 0 000 1000 0 1223344
Q ss_pred CCccccCCCeEE---------------------------------------------------EechHHHHHHHHHHHHc
Q 039605 162 GIDYDEQDNYVV---------------------------------------------------IKHAALFTSTIMSKLLA 190 (352)
Q Consensus 162 Gi~~~~~~~~~~---------------------------------------------------~~~~~~~~~~L~~~~~~ 190 (352)
++++...+.+.. ..+...+.+.|.+.+.
T Consensus 82 ~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~~~~- 160 (393)
T PRK11728 82 GIPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQ- 160 (393)
T ss_pred CCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHHHHH-
Confidence 554433221111 1123345566666665
Q ss_pred CCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCC
Q 039605 191 RPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 191 ~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
+.|+++++++++.++..+++++ .+.+.+ .++.++.||+|+|.++.
T Consensus 161 ~~Gv~i~~~~~V~~i~~~~~~~-~V~~~~---------------g~i~ad~vV~A~G~~s~ 205 (393)
T PRK11728 161 ARGGEIRLGAEVTALDEHANGV-VVRTTQ---------------GEYEARTLINCAGLMSD 205 (393)
T ss_pred hCCCEEEcCCEEEEEEecCCeE-EEEECC---------------CEEEeCEEEECCCcchH
Confidence 5699999999999998776654 454422 27999999999999873
No 155
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.19 E-value=6.9e-10 Score=110.33 Aligned_cols=158 Identities=18% Similarity=0.241 Sum_probs=109.9
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-.++|||+|..|+.+|..|++. |.+|++|++.+.+... ...+....+.+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~-g~~Vtli~~~~~~l~~------------------------------~d~~~~~~l~~ 226 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTEL-GVKVTLVSSRDRVLPG------------------------------EDADAAEVLEE 226 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCcCCCC------------------------------CCHHHHHHHHH
Confidence 3799999999999999999999 9999999987643210 01233344444
Q ss_pred HHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCccccccc
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDMN 266 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~~ 266 (352)
.+. +.|+++++++.+.++..+++++. +.+.+ ..++.+|.||+|+|..+.....++. ..++..+
T Consensus 227 ~L~-~~gV~i~~~~~v~~v~~~~~~~~-v~~~~--------------g~~l~~D~vl~a~G~~pn~~~l~l~-~~gl~~~ 289 (466)
T PRK07845 227 VFA-RRGMTVLKRSRAESVERTGDGVV-VTLTD--------------GRTVEGSHALMAVGSVPNTAGLGLE-EAGVELT 289 (466)
T ss_pred HHH-HCCcEEEcCCEEEEEEEeCCEEE-EEECC--------------CcEEEecEEEEeecCCcCCCCCCch-hhCceEC
Confidence 444 67999999999999987665542 33322 2479999999999976544321111 1223332
Q ss_pred -cccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHH
Q 039605 267 -TAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 267 -~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
.+...+.+++++..|++|++||+.... +....+..+|..||..++.
T Consensus 290 ~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~-------~l~~~A~~~g~~aa~~i~g 336 (466)
T PRK07845 290 PSGHITVDRVSRTSVPGIYAAGDCTGVL-------PLASVAAMQGRIAMYHALG 336 (466)
T ss_pred CCCcEeECCCcccCCCCEEEEeeccCCc-------cchhHHHHHHHHHHHHHcC
Confidence 355666688899999999999998431 2234557789999988873
No 156
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.19 E-value=6.5e-10 Score=110.73 Aligned_cols=160 Identities=19% Similarity=0.224 Sum_probs=108.6
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-.|+|||||+.|+.+|..|++. |.+|+|||+.+.+.. ....++...+.+
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~-g~~Vtli~~~~~il~------------------------------~~~~~~~~~l~~ 229 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADF-GVEVTVVEAADRILP------------------------------TEDAELSKEVAR 229 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEEEecCccCC------------------------------cCCHHHHHHHHH
Confidence 4899999999999999999999 999999998864311 012334444455
Q ss_pred HHHcCCCcEEEccceeEEEEEe-CCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcccccc
Q 039605 187 KLLARPNVKLFNAVAAEDLIVK-GNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDM 265 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~ 265 (352)
.+. +.|++++.++.+.++..+ ++++..+...+ |+..++.+|.||+|+|..+.....+... ..+..
T Consensus 230 ~l~-~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~------------g~~~~i~~D~vi~a~G~~p~~~~l~l~~-~~~~~ 295 (472)
T PRK05976 230 LLK-KLGVRVVTGAKVLGLTLKKDGGVLIVAEHN------------GEEKTLEADKVLVSVGRRPNTEGIGLEN-TDIDV 295 (472)
T ss_pred HHH-hcCCEEEeCcEEEEEEEecCCCEEEEEEeC------------CceEEEEeCEEEEeeCCccCCCCCCchh-cCcee
Confidence 554 569999999999999752 34443333322 1235799999999999765432111111 12222
Q ss_pred ccccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHH
Q 039605 266 NTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLAL 318 (352)
Q Consensus 266 ~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~ 318 (352)
+.+...+.+++++..|++|++||+... +. ....+..+|..||..|.
T Consensus 296 ~~g~i~Vd~~l~ts~~~IyAiGD~~~~----~~---~~~~A~~~g~~aa~~i~ 341 (472)
T PRK05976 296 EGGFIQIDDFCQTKERHIYAIGDVIGE----PQ---LAHVAMAEGEMAAEHIA 341 (472)
T ss_pred cCCEEEECCCcccCCCCEEEeeecCCC----cc---cHHHHHHHHHHHHHHHc
Confidence 345555667788889999999999742 12 23455778999998875
No 157
>PRK14694 putative mercuric reductase; Provisional
Probab=99.19 E-value=1.2e-09 Score=108.65 Aligned_cols=155 Identities=15% Similarity=0.184 Sum_probs=107.9
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-.++|||+|+.|+..|..|++. |.+|+++++...... ...++...+.+
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~-g~~Vtlv~~~~~l~~-------------------------------~~~~~~~~l~~ 226 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARL-GSRVTVLARSRVLSQ-------------------------------EDPAVGEAIEA 226 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEECCCCCCC-------------------------------CCHHHHHHHHH
Confidence 3799999999999999999999 999999987532110 11334444555
Q ss_pred HHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCccccccc
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDMN 266 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~~ 266 (352)
.+. +.|++++.++.+.++..+++.+ .+.... .++.+|.||+|+|..+.....+.. ..++..+
T Consensus 227 ~l~-~~GI~v~~~~~v~~i~~~~~~~-~v~~~~---------------~~i~~D~vi~a~G~~pn~~~l~l~-~~g~~~~ 288 (468)
T PRK14694 227 AFR-REGIEVLKQTQASEVDYNGREF-ILETNA---------------GTLRAEQLLVATGRTPNTENLNLE-SIGVETE 288 (468)
T ss_pred HHH-hCCCEEEeCCEEEEEEEcCCEE-EEEECC---------------CEEEeCEEEEccCCCCCcCCCCch-hcCcccC
Confidence 554 6799999999999987665433 233211 369999999999977654332211 1223334
Q ss_pred cccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHH
Q 039605 267 TAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLAL 318 (352)
Q Consensus 267 ~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~ 318 (352)
.+...+.+++++..|++|++||+.... .. ...+..+|..||..|+
T Consensus 289 ~G~i~vd~~~~Ts~~~IyA~GD~~~~~----~~---~~~A~~~G~~aa~~i~ 333 (468)
T PRK14694 289 RGAIRIDEHLQTTVSGIYAAGDCTDQP----QF---VYVAAAGGSRAAINMT 333 (468)
T ss_pred CCeEeeCCCcccCCCCEEEEeecCCCc----cc---HHHHHHHHHHHHHHhc
Confidence 566666788899999999999998532 21 2334678999999886
No 158
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.19 E-value=3.7e-10 Score=111.56 Aligned_cols=163 Identities=18% Similarity=0.133 Sum_probs=110.5
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-.|+|||+|+.|+.+|..|.+. |.+|+++++.+..... ....++.+.+.+
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~l~~-----------------------------~~~~~~~~~l~~ 199 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHL-GKNVRIIQLEDRILPD-----------------------------SFDKEITDVMEE 199 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCcEEEEeCCcccCch-----------------------------hcCHHHHHHHHH
Confidence 4799999999999999999999 9999999987532100 012344445555
Q ss_pred HHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcccccc-
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDM- 265 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~- 265 (352)
.+. +.|++++.++++.++.. ++++..+..++ .++.+|.||+|+|..+.... ....++..
T Consensus 200 ~l~-~~gI~v~~~~~v~~i~~-~~~~~~v~~~~---------------~~i~~d~vi~a~G~~p~~~~---l~~~gl~~~ 259 (444)
T PRK09564 200 ELR-ENGVELHLNEFVKSLIG-EDKVEGVVTDK---------------GEYEADVVIVATGVKPNTEF---LEDTGLKTL 259 (444)
T ss_pred HHH-HCCCEEEcCCEEEEEec-CCcEEEEEeCC---------------CEEEcCEEEECcCCCcCHHH---HHhcCcccc
Confidence 554 67999999999999854 44454444421 36999999999997543221 11112222
Q ss_pred ccccceeecccccccCceeEecchhhhhcCC---CCCCcchhhhhhchHHHHHHHHH
Q 039605 266 NTAEDAIVKLTREIVPGMIVAGMEVAEIDGA---PRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 266 ~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~---~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
+.+...+.+++++..|++|++||+....+.. ...-+.+..+..+|+.+|+.+..
T Consensus 260 ~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g 316 (444)
T PRK09564 260 KNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAG 316 (444)
T ss_pred CCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcC
Confidence 2355566677888999999999998643211 11123455667899999988874
No 159
>PRK07538 hypothetical protein; Provisional
Probab=99.19 E-value=7.2e-10 Score=108.50 Aligned_cols=133 Identities=15% Similarity=0.169 Sum_probs=88.2
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCC-CcceeecchHHHHHHHcCCc---------cc------cCCC-
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGG-ASGSVVRKPAHLFLDELGID---------YD------EQDN- 170 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG-~~~~~~~~~~~~~l~~~Gi~---------~~------~~~~- 170 (352)
||+|||||++|+++|+.|+++ |++|+|+|+.+...- +....+.....+.|+++|+. .. ..+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQR-GIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 899999999999999999999 999999999875431 12233333445555555532 00 0000
Q ss_pred -----------e---EEEechHHHHHHHHHHHHcCCC-cEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCe
Q 039605 171 -----------Y---VVIKHAALFTSTIMSKLLARPN-VKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPN 235 (352)
Q Consensus 171 -----------~---~~~~~~~~~~~~L~~~~~~~~g-v~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~ 235 (352)
+ .+..+..++.+.|++.+.++.| .+++++++++++..+++.+. +.+.++ .+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~-~~~~~~---------~~g~~~ 150 (413)
T PRK07538 81 IWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV-VFLGDR---------AGGDLV 150 (413)
T ss_pred EeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE-EEEecc---------CCCccc
Confidence 0 1124556777788888765545 57999999999987665432 222221 122456
Q ss_pred EEEeCEEEEccCCCCC
Q 039605 236 VMEAKVVVSSCGHDGP 251 (352)
Q Consensus 236 ~i~A~~VIlAtG~~~~ 251 (352)
+++||.||.|+|.++.
T Consensus 151 ~~~adlvIgADG~~S~ 166 (413)
T PRK07538 151 SVRGDVLIGADGIHSA 166 (413)
T ss_pred eEEeeEEEECCCCCHH
Confidence 8999999999998773
No 160
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.19 E-value=1e-09 Score=109.60 Aligned_cols=119 Identities=16% Similarity=0.077 Sum_probs=70.5
Q ss_pred EccceeEEEEEeC-CEEEEEEEcccceeccCCCC------CCCCCeEEEeCEEEEccCCCCCCCCCCCCCccccccc-cc
Q 039605 197 FNAVAAEDLIVKG-NRVGGIVTNWALVSMNHDSQ------SCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDMN-TA 268 (352)
Q Consensus 197 ~~~t~v~~l~~~~-g~v~gv~~~~g~~~~~~~~~------~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~~-~g 268 (352)
++++.+.++..++ +++.++.+..-....+ .++ ..++..++.+|.||+|.|...+.. .+....++..+ .+
T Consensus 355 ~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~-~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~--~~~~~~gl~~~~~G 431 (485)
T TIGR01317 355 EYSILTKEFIGDDEGKVTALRTVRVEWKKS-QDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQ--ILLDDFGVKKTRRG 431 (485)
T ss_pred EEecCcEEEEEcCCCeEEEEEEEEEEeccC-CCCCccceecCCceEEEECCEEEEccCcCCCcc--ccccccCcccCCCC
Confidence 4566667776653 6788776421000000 011 123456899999999999642211 11112223322 23
Q ss_pred cceee-cccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCCCC
Q 039605 269 EDAIV-KLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPN 325 (352)
Q Consensus 269 ~~~vv-~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~~~ 325 (352)
...++ +.+.+..||+|++||++... . ....++.+|++||..|.+||.+..
T Consensus 432 ~i~~~~~~~~Ts~~gVfAaGD~~~g~----~---~~~~Av~~G~~AA~~i~~~L~g~~ 482 (485)
T TIGR01317 432 NISAGYDDYSTSIPGVFAAGDCRRGQ----S---LIVWAINEGRKAAAAVDRYLMGSS 482 (485)
T ss_pred CEEecCCCceECCCCEEEeeccCCCc----H---HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33222 56778999999999997421 1 233458899999999999997654
No 161
>PRK14727 putative mercuric reductase; Provisional
Probab=99.18 E-value=1.2e-09 Score=109.00 Aligned_cols=156 Identities=13% Similarity=0.129 Sum_probs=107.7
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-.++|||+|..|+..|..|++. |.+|+||++..... ....++...+.+
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~l~-------------------------------~~d~~~~~~l~~ 236 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARL-GSRVTILARSTLLF-------------------------------REDPLLGETLTA 236 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCEEEEEEcCCCCC-------------------------------cchHHHHHHHHH
Confidence 3799999999999999999999 99999999753210 011234444555
Q ss_pred HHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCccccccc
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDMN 266 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~~ 266 (352)
.+. +.|+++++++.+..+..+++.+. +... ..++.+|.||+|+|..+.....+.. ..++..+
T Consensus 237 ~L~-~~GV~i~~~~~V~~i~~~~~~~~-v~~~---------------~g~i~aD~VlvA~G~~pn~~~l~l~-~~g~~~~ 298 (479)
T PRK14727 237 CFE-KEGIEVLNNTQASLVEHDDNGFV-LTTG---------------HGELRAEKLLISTGRHANTHDLNLE-AVGVTTD 298 (479)
T ss_pred HHH-hCCCEEEcCcEEEEEEEeCCEEE-EEEc---------------CCeEEeCEEEEccCCCCCccCCCch-hhCceec
Confidence 554 67999999999999987655432 2221 1368999999999987654321111 1123332
Q ss_pred -cccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHH
Q 039605 267 -TAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 267 -~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
.+...+.+++++..|++|++||+.... . ....++.+|+.||..|..
T Consensus 299 ~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~----~---~~~~A~~~G~~aa~~i~g 345 (479)
T PRK14727 299 TSGAIVVNPAMETSAPDIYAAGDCSDLP----Q---FVYVAAAAGSRAGINMTG 345 (479)
T ss_pred CCCCEEECCCeecCCCCEEEeeecCCcc----h---hhhHHHHHHHHHHHHHcC
Confidence 355666788899999999999998532 1 123446789999999863
No 162
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.18 E-value=3.5e-11 Score=105.46 Aligned_cols=156 Identities=22% Similarity=0.273 Sum_probs=92.4
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHH--H--H
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFT--S--T 183 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~--~--~ 183 (352)
||||||||++|+.||..|++. +++|+|+|+.+..... ...+..+ .+.... .+..... + .
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-~~~v~ii~~~~~~~~~-~~~~~~~--~~~~~~-------------~~~~~~~~~~~~~ 63 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-GAKVLIIEKSPGTPYN-SGCIPSP--LLVEIA-------------PHRHEFLPARLFK 63 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-TSEEEEESSSSHHHHH-HSHHHHH--HHHHHH-------------HHHHHHHHHHHGH
T ss_pred CEEEEecHHHHHHHHHHHhcC-CCeEEEEecccccccc-ccccccc--cccccc-------------ccccccccccccc
Confidence 799999999999999999998 9999999886532110 0000000 000000 0000010 1 3
Q ss_pred HHHHHHcCCCcEEEccceeEEEEEeCCEEE----EEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCC-CCCCCC-
Q 039605 184 IMSKLLARPNVKLFNAVAAEDLIVKGNRVG----GIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGP-FGATGV- 257 (352)
Q Consensus 184 L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~----gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~-~~~~g~- 257 (352)
+.+++. ..+++++.+.++.++......+. .+... . .++..++.+|++|+|||..+. +..+|.
T Consensus 64 ~~~~~~-~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~d~lviAtG~~~~~~~i~g~~ 131 (201)
T PF07992_consen 64 LVDQLK-NRGVEIRLNAKVVSIDPESKRVVCPAVTIQVV-------E----TGDGREIKYDYLVIATGSRPRTPNIPGEE 131 (201)
T ss_dssp HHHHHH-HHTHEEEHHHTEEEEEESTTEEEETCEEEEEE-------E----TTTEEEEEEEEEEEESTEEEEEESSTTTT
T ss_pred cccccc-cceEEEeeccccccccccccccccCcccceee-------c----cCCceEecCCeeeecCccccceeecCCCc
Confidence 344443 46899999999999988877541 11110 0 013578999999999996532 222321
Q ss_pred --------------------C------------Ccccccc-ccccceeecccccccCceeEecchhhh
Q 039605 258 --------------------R------------GMKALDM-NTAEDAIVKLTREIVPGMIVAGMEVAE 292 (352)
Q Consensus 258 --------------------~------------g~~~~~~-~~g~~~vv~~~~~~~pg~~~aG~~~~~ 292 (352)
+ ....+.. ..+...+.++.++..|++|++||++..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~ 199 (201)
T PF07992_consen 132 VAYFLRGVDDAQRFLELLESPKRVAVVGTEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGI 199 (201)
T ss_dssp TECBTTSEEHHHHHHTHSSTTSEEEEESTTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0 0111222 245556667778889999999999753
No 163
>PLN02463 lycopene beta cyclase
Probab=99.18 E-value=5.9e-10 Score=109.80 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=82.6
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCcc----ccC------------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDY----DEQ------------ 168 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~----~~~------------ 168 (352)
..|||+||||||+|+++|+.|++. |++|+|||+.+...-... +..+ .+.++++|+.- .+.
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~-Gl~V~liE~~~~~~~p~~--~g~w-~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~ 102 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEA-GLSVCCIDPSPLSIWPNN--YGVW-VDEFEALGLLDCLDTTWPGAVVYIDDGKKK 102 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHC-CCeEEEeccCccchhccc--cchH-HHHHHHCCcHHHHHhhCCCcEEEEeCCCCc
Confidence 468999999999999999999999 999999999754221110 0001 11222333210 000
Q ss_pred ---CCeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEc
Q 039605 169 ---DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSS 245 (352)
Q Consensus 169 ---~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlA 245 (352)
..|. ..+..++.+.|.+++. +.|++++. .+|.++..+++++ .|.+.+ ..+++|+.||+|
T Consensus 103 ~~~~~y~-~V~R~~L~~~Ll~~~~-~~GV~~~~-~~V~~I~~~~~~~-~V~~~d--------------G~~i~A~lVI~A 164 (447)
T PLN02463 103 DLDRPYG-RVNRKKLKSKMLERCI-ANGVQFHQ-AKVKKVVHEESKS-LVVCDD--------------GVKIQASLVLDA 164 (447)
T ss_pred cccCcce-eEEHHHHHHHHHHHHh-hcCCEEEe-eEEEEEEEcCCeE-EEEECC--------------CCEEEcCEEEEC
Confidence 1122 2345677788888776 46899874 5899988776654 455543 258999999999
Q ss_pred cCCCCC
Q 039605 246 CGHDGP 251 (352)
Q Consensus 246 tG~~~~ 251 (352)
+|..+.
T Consensus 165 dG~~s~ 170 (447)
T PLN02463 165 TGFSRC 170 (447)
T ss_pred cCCCcC
Confidence 998764
No 164
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.18 E-value=6.4e-10 Score=108.42 Aligned_cols=131 Identities=20% Similarity=0.254 Sum_probs=90.2
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCC-CCcceeecchHHHHHHHcCCcccc---------------CC--
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPG-GASGSVVRKPAHLFLDELGIDYDE---------------QD-- 169 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~G-G~~~~~~~~~~~~~l~~~Gi~~~~---------------~~-- 169 (352)
+|+|||||++|+++|+.|+++ |++|+|+||.+... .+....+.....+.|+++|+.-.. ..
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~~-G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAAR-GWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 799999999999999999999 99999999986542 112334445556666666542100 00
Q ss_pred ----------------CeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCC
Q 039605 170 ----------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMD 233 (352)
Q Consensus 170 ----------------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~ 233 (352)
..+...+..++.+.|++.+....+++++++++++++..+++.+. +.+..+ . +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~-v~~~~~------~-----~ 150 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSIT-ATIIRT------N-----S 150 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceE-EEEEeC------C-----C
Confidence 00112345567788888877667899999999999987766543 222110 0 1
Q ss_pred CeEEEeCEEEEccCCCCC
Q 039605 234 PNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 234 ~~~i~A~~VIlAtG~~~~ 251 (352)
..++.+|.||.|+|.+|.
T Consensus 151 ~~~~~adlvIgADG~~S~ 168 (400)
T PRK06475 151 VETVSAAYLIACDGVWSM 168 (400)
T ss_pred CcEEecCEEEECCCccHh
Confidence 257999999999999873
No 165
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.18 E-value=6.3e-10 Score=111.63 Aligned_cols=40 Identities=23% Similarity=0.376 Sum_probs=36.5
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
.+|||+|||||+.|+++|+.|+++ |++|+||||++..+|+
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~r-G~~V~LlEk~d~~~Gt 44 (502)
T PRK13369 5 ETYDLFVIGGGINGAGIARDAAGR-GLKVLLCEKDDLAQGT 44 (502)
T ss_pred cccCEEEECCCHHHHHHHHHHHhC-CCcEEEEECCCCCCCC
Confidence 468999999999999999999999 9999999999776554
No 166
>PTZ00058 glutathione reductase; Provisional
Probab=99.18 E-value=8.2e-10 Score=111.62 Aligned_cols=166 Identities=9% Similarity=0.070 Sum_probs=112.1
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-.|+|||+|..|+..|..+++. |.+|+|+|+++.+.. ....++.+.+.+
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~-G~~Vtli~~~~~il~------------------------------~~d~~i~~~l~~ 286 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRL-GAESYIFARGNRLLR------------------------------KFDETIINELEN 286 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCcEEEEEecccccc------------------------------cCCHHHHHHHHH
Confidence 4799999999999999999999 999999998764310 011334445555
Q ss_pred HHHcCCCcEEEccceeEEEEEeCC-EEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcccccc
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGN-RVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDM 265 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g-~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~ 265 (352)
.+. +.|++++.++.+.++..+++ ++. +...+ +..++.+|.||+|+|..+.....+..+. .+..
T Consensus 287 ~L~-~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~-------------~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~-~~~~ 350 (561)
T PTZ00058 287 DMK-KNNINIITHANVEEIEKVKEKNLT-IYLSD-------------GRKYEHFDYVIYCVGRSPNTEDLNLKAL-NIKT 350 (561)
T ss_pred HHH-HCCCEEEeCCEEEEEEecCCCcEE-EEECC-------------CCEEEECCEEEECcCCCCCccccCcccc-ceec
Confidence 554 57999999999999876543 332 22211 1257999999999997654332222221 1223
Q ss_pred ccccceeecccccccCceeEecchhhhhc--------------------------CCCC-CCcchhhhhhchHHHHHHHH
Q 039605 266 NTAEDAIVKLTREIVPGMIVAGMEVAEID--------------------------GAPR-MGPTFGAMMISGQKAAHLAL 318 (352)
Q Consensus 266 ~~g~~~vv~~~~~~~pg~~~aG~~~~~~~--------------------------g~~r-~g~~~~~~~~sG~~aA~~i~ 318 (352)
+.|.+.+.+++++..|++|++||+....+ +.+. ..+....+..+|+.||+.|.
T Consensus 351 ~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~ 430 (561)
T PTZ00058 351 PKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLF 430 (561)
T ss_pred CCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHh
Confidence 45666677889999999999999986211 1111 12334456778999999887
Q ss_pred H
Q 039605 319 K 319 (352)
Q Consensus 319 ~ 319 (352)
.
T Consensus 431 g 431 (561)
T PTZ00058 431 G 431 (561)
T ss_pred C
Confidence 4
No 167
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.17 E-value=5.9e-10 Score=108.32 Aligned_cols=132 Identities=16% Similarity=0.195 Sum_probs=86.3
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCC--CC-CcceeecchHHHHHHHcCCccc--c------------C
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSP--GG-ASGSVVRKPAHLFLDELGIDYD--E------------Q 168 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~--GG-~~~~~~~~~~~~~l~~~Gi~~~--~------------~ 168 (352)
.+||+|||||++|+++|+.|++. |++|+||||.+.. .. .....+.....+.|+++|+.-. . .
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFD 80 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHC-CCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeC
Confidence 46999999999999999999999 9999999998742 11 1223355556777877775211 0 0
Q ss_pred CCeEE-------------EechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEc-ccceeccCCCCCCCCC
Q 039605 169 DNYVV-------------IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTN-WALVSMNHDSQSCMDP 234 (352)
Q Consensus 169 ~~~~~-------------~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~-~g~~~~~~~~~~~g~~ 234 (352)
..... ......+...|++.+. ..|+.++++.+++.+...++.-..|.+. +| +.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g------------~~ 147 (390)
T TIGR02360 81 GQRFRIDLKALTGGKTVMVYGQTEVTRDLMEARE-AAGLTTVYDADDVRLHDLAGDRPYVTFERDG------------ER 147 (390)
T ss_pred CEEEEEeccccCCCceEEEeCHHHHHHHHHHHHH-hcCCeEEEeeeeEEEEecCCCccEEEEEECC------------eE
Confidence 00000 1112345566777665 4588898888877775533222234442 21 23
Q ss_pred eEEEeCEEEEccCCCCC
Q 039605 235 NVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 235 ~~i~A~~VIlAtG~~~~ 251 (352)
.++++|.||.|+|.+|.
T Consensus 148 ~~i~adlvIGADG~~S~ 164 (390)
T TIGR02360 148 HRLDCDFIAGCDGFHGV 164 (390)
T ss_pred EEEEeCEEEECCCCchh
Confidence 57999999999998874
No 168
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.17 E-value=1e-09 Score=109.43 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=110.9
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-.|+|||+|..|+.+|..|++. |.+|+|||+.+.+.. ....++...+.+
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~------------------------------~~d~~~~~~~~~ 232 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRL-GAEVTILEALPAFLA------------------------------AADEQVAKEAAK 232 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCCccCC------------------------------cCCHHHHHHHHH
Confidence 3799999999999999999999 999999999764311 012344445555
Q ss_pred HHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcccccc-
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDM- 265 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~- 265 (352)
.+. +.|++++.++.+.++..+++.+. +...++ +++..++.+|.||+|+|..+....... ...++..
T Consensus 233 ~l~-~~gi~i~~~~~v~~i~~~~~~v~-v~~~~~----------~g~~~~i~~D~vl~a~G~~p~~~~l~~-~~~g~~~~ 299 (475)
T PRK06327 233 AFT-KQGLDIHLGVKIGEIKTGGKGVS-VAYTDA----------DGEAQTLEVDKLIVSIGRVPNTDGLGL-EAVGLKLD 299 (475)
T ss_pred HHH-HcCcEEEeCcEEEEEEEcCCEEE-EEEEeC----------CCceeEEEcCEEEEccCCccCCCCCCc-HhhCceeC
Confidence 555 57999999999999987665542 333221 113367999999999997654321111 1112332
Q ss_pred ccccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHH
Q 039605 266 NTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 266 ~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
+.+...+.+++++..|++|++||+.... . ....+..+|..||+.|..
T Consensus 300 ~~G~i~vd~~~~Ts~~~VyA~GD~~~~~----~---~~~~A~~~G~~aa~~i~g 346 (475)
T PRK06327 300 ERGFIPVDDHCRTNVPNVYAIGDVVRGP----M---LAHKAEEEGVAVAERIAG 346 (475)
T ss_pred CCCeEeECCCCccCCCCEEEEEeccCCc----c---hHHHHHHHHHHHHHHHcC
Confidence 2355556677888999999999997421 1 233457789999999864
No 169
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.16 E-value=5e-10 Score=107.68 Aligned_cols=35 Identities=37% Similarity=0.673 Sum_probs=32.5
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSP 142 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~ 142 (352)
+||+|||||++|+++|++|+++ |++|+|||+....
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~-G~~V~vle~~~~~ 35 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR-GLSVTVIERSSRA 35 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCC
Confidence 5999999999999999999999 9999999998643
No 170
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.16 E-value=8.7e-10 Score=109.97 Aligned_cols=159 Identities=9% Similarity=0.108 Sum_probs=108.2
Q ss_pred ccEEEECCcHHHHHHHHHHh---cCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEIS---KNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTST 183 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la---~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~ 183 (352)
-.++|||||..|+..|..++ +. |.+|+|||+.+.+.. ....++.+.
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~-G~~Vtli~~~~~il~------------------------------~~d~~~~~~ 236 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPR-GGKVTLCYRNNMILR------------------------------GFDSTLRKE 236 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccC-CCeEEEEecCCcccc------------------------------ccCHHHHHH
Confidence 37999999999999996553 45 899999998864311 012344455
Q ss_pred HHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcccc
Q 039605 184 IMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKAL 263 (352)
Q Consensus 184 L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~ 263 (352)
+.+.+. +.|+++++++.+.++..+++....+.+.+ ..++.+|.||+|+|..+.....++ ...++
T Consensus 237 l~~~L~-~~GI~i~~~~~v~~i~~~~~~~~~v~~~~--------------g~~i~~D~vl~a~G~~Pn~~~l~l-~~~gl 300 (486)
T TIGR01423 237 LTKQLR-ANGINIMTNENPAKVTLNADGSKHVTFES--------------GKTLDVDVVMMAIGRVPRTQTLQL-DKVGV 300 (486)
T ss_pred HHHHHH-HcCCEEEcCCEEEEEEEcCCceEEEEEcC--------------CCEEEcCEEEEeeCCCcCcccCCc-hhhCc
Confidence 566665 57999999999999986544333344422 247999999999997654432111 11223
Q ss_pred cc-ccccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHH
Q 039605 264 DM-NTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 264 ~~-~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
.. ..+.+.+.+++++..|++|++||+... +. ...-+..+|..+|+.|+.
T Consensus 301 ~~~~~G~I~Vd~~l~Ts~~~IyA~GDv~~~----~~---l~~~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 301 ELTKKGAIQVDEFSRTNVPNIYAIGDVTDR----VM---LTPVAINEGAAFVDTVFG 350 (486)
T ss_pred eECCCCCEecCCCCcCCCCCEEEeeecCCC----cc---cHHHHHHHHHHHHHHHhC
Confidence 33 235566678888999999999999742 12 223347789999988863
No 171
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.16 E-value=2.2e-10 Score=113.88 Aligned_cols=41 Identities=29% Similarity=0.494 Sum_probs=37.3
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcc
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASG 147 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~ 147 (352)
+|||+|||+||+|+.||+.|++. |++|+|||+...+||.+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~-G~~V~liE~~~~~GG~c~ 43 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQL-GLKVACVEGRSTLGGTCL 43 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCceeeeec
Confidence 58999999999999999999999 999999998667888643
No 172
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.16 E-value=1.5e-09 Score=107.57 Aligned_cols=126 Identities=12% Similarity=0.116 Sum_probs=79.1
Q ss_pred CCcEEEccceeEEEEEe---CCEEEEEEEcccceeccCCCC-----CCCCCeEEEeCEEEEccCCCCCCCCCCC--CCcc
Q 039605 192 PNVKLFNAVAAEDLIVK---GNRVGGIVTNWALVSMNHDSQ-----SCMDPNVMEAKVVVSSCGHDGPFGATGV--RGMK 261 (352)
Q Consensus 192 ~gv~i~~~t~v~~l~~~---~g~v~gv~~~~g~~~~~~~~~-----~~g~~~~i~A~~VIlAtG~~~~~~~~g~--~g~~ 261 (352)
.++.|++.....+++.+ +++|.++++......-...++ .+|+..+|.+|.||.|.|..+. +.+++ ....
T Consensus 288 ~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~-p~~~l~f~~~~ 366 (491)
T PLN02852 288 RELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSL-PVDGLPFDHKR 366 (491)
T ss_pred ceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCC-CCCCCccccCc
Confidence 47899999999999852 268999887542111110000 1345678999999999997642 22222 1111
Q ss_pred ccccc-cccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCCC
Q 039605 262 ALDMN-TAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQP 324 (352)
Q Consensus 262 ~~~~~-~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~~ 324 (352)
++..+ .|.+.+...+.+..||+|++||+.... .. ..+..+.+++.+|..|++++...
T Consensus 367 gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp---~g---vI~t~~~dA~~ta~~i~~d~~~~ 424 (491)
T PLN02852 367 GVVPNVHGRVLSSASGADTEPGLYVVGWLKRGP---TG---IIGTNLTCAEETVASIAEDLEQG 424 (491)
T ss_pred CeeECCCceEEeCCCCccCCCCEEEeeeEecCC---CC---eeeecHhhHHHHHHHHHHHHHcC
Confidence 22222 344443334557899999999998532 21 23444778999999999998763
No 173
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.16 E-value=6.8e-10 Score=111.45 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=36.3
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
..|||||||||..|+++|+.|+++ |++|+||||++..+|+
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~r-Gl~V~LvEk~d~~~Gt 44 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGR-GLSVLLCEQDDLASAT 44 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCCCc
Confidence 468999999999999999999999 9999999998775554
No 174
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.16 E-value=4.7e-10 Score=110.75 Aligned_cols=134 Identities=20% Similarity=0.304 Sum_probs=88.1
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceee---c------------------------------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVV---R------------------------------ 151 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~---~------------------------------ 151 (352)
.++||+|||||+.|+.+|+.++.+ |++|+|+|++++..|++.... +
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~R-Gl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH 89 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGR-GLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPH 89 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhC-CCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCcc
Confidence 689999999999999999999999 999999999998877622110 0
Q ss_pred -----------ch--HHHHH--------HH-cCCc----------cc----------cC---CCeEE---EechHHHHHH
Q 039605 152 -----------KP--AHLFL--------DE-LGID----------YD----------EQ---DNYVV---IKHAALFTST 183 (352)
Q Consensus 152 -----------~~--~~~~l--------~~-~Gi~----------~~----------~~---~~~~~---~~~~~~~~~~ 183 (352)
.+ ...|+ .. -|+. .. .. +.+.+ ..+...+.-.
T Consensus 90 ~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~ 169 (532)
T COG0578 90 LVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAA 169 (532)
T ss_pred ccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHH
Confidence 00 00000 00 1110 00 00 00000 1111223233
Q ss_pred HHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 184 IMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 184 L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
....+. +.|.++++.++|+.+..+++ ++||.+.+. . .|+..+|+|+.||.|+|.|.
T Consensus 170 ~a~~A~-~~Ga~il~~~~v~~~~re~~-v~gV~~~D~------~---tg~~~~ira~~VVNAaGpW~ 225 (532)
T COG0578 170 NARDAA-EHGAEILTYTRVESLRREGG-VWGVEVEDR------E---TGETYEIRARAVVNAAGPWV 225 (532)
T ss_pred HHHHHH-hcccchhhcceeeeeeecCC-EEEEEEEec------C---CCcEEEEEcCEEEECCCccH
Confidence 333333 67999999999999999988 999998652 2 23578999999999999886
No 175
>PLN02697 lycopene epsilon cyclase
Probab=99.16 E-value=4.7e-10 Score=112.34 Aligned_cols=123 Identities=18% Similarity=0.296 Sum_probs=81.5
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCc-------------cccC---
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGID-------------YDEQ--- 168 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~-------------~~~~--- 168 (352)
..|||+||||||+|+++|+.|++. |++|+|||+......+... +. ..++++|+. ++..
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~-Gl~V~LIe~~~p~~~n~Gv-W~----~~l~~lgl~~~i~~~w~~~~v~~~~~~~~ 180 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKL-GLNVGLIGPDLPFTNNYGV-WE----DEFKDLGLEDCIEHVWRDTIVYLDDDKPI 180 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhC-CCcEEEecCcccCCCcccc-ch----hHHHhcCcHHHHHhhcCCcEEEecCCcee
Confidence 468999999999999999999999 9999999986443322111 00 112222211 0000
Q ss_pred ---CCeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEc
Q 039605 169 ---DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSS 245 (352)
Q Consensus 169 ---~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlA 245 (352)
..|. ..+...+.+.|.+++. +.|+++ .+++|+++..+++.+..+.+.+ ..++.|+.||+|
T Consensus 181 ~~~~~Yg-~V~R~~L~~~Ll~~a~-~~GV~~-~~~~V~~I~~~~~~~~vv~~~d--------------G~~i~A~lVI~A 243 (529)
T PLN02697 181 MIGRAYG-RVSRTLLHEELLRRCV-ESGVSY-LSSKVDRITEASDGLRLVACED--------------GRVIPCRLATVA 243 (529)
T ss_pred eccCccc-EEcHHHHHHHHHHHHH-hcCCEE-EeeEEEEEEEcCCcEEEEEEcC--------------CcEEECCEEEEC
Confidence 0111 2345677788888876 568998 5668999887666554343332 257999999999
Q ss_pred cCCCC
Q 039605 246 CGHDG 250 (352)
Q Consensus 246 tG~~~ 250 (352)
+|.++
T Consensus 244 dG~~S 248 (529)
T PLN02697 244 SGAAS 248 (529)
T ss_pred CCcCh
Confidence 99887
No 176
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.16 E-value=6.2e-10 Score=117.12 Aligned_cols=160 Identities=12% Similarity=0.121 Sum_probs=108.3
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-.++|||||..|+.+|..|++. |.+|+|||+.+.+-. . . -.......+.+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~-G~~Vtvv~~~~~ll~---------------~---~-----------ld~~~~~~l~~ 190 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNL-GMDVSVIHHAPGLMA---------------K---Q-----------LDQTAGRLLQR 190 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhc-CCeEEEEccCCchhh---------------h---h-----------cCHHHHHHHHH
Confidence 3799999999999999999999 999999998763210 0 0 01222333444
Q ss_pred HHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCccccccc
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDMN 266 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~~ 266 (352)
.+. +.|+++++++.++++..+ +++.++.+.++ .++.+|.||+|+|..+.... ....++..+
T Consensus 191 ~l~-~~GV~v~~~~~v~~i~~~-~~~~~v~~~dG--------------~~i~~D~Vi~a~G~~Pn~~l---a~~~gl~~~ 251 (785)
T TIGR02374 191 ELE-QKGLTFLLEKDTVEIVGA-TKADRIRFKDG--------------SSLEADLIVMAAGIRPNDEL---AVSAGIKVN 251 (785)
T ss_pred HHH-HcCCEEEeCCceEEEEcC-CceEEEEECCC--------------CEEEcCEEEECCCCCcCcHH---HHhcCCccC
Confidence 443 679999999999888754 44556666432 57999999999996554322 112223333
Q ss_pred cccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHH
Q 039605 267 TAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 267 ~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
+.+.+.+++++..|++|++||++.... ...+ .+..+..+|+.+|..++.
T Consensus 252 -ggI~Vd~~~~Ts~p~IyA~GD~a~~~~--~~~g-l~~~a~~qa~vaA~ni~g 300 (785)
T TIGR02374 252 -RGIIVNDSMQTSDPDIYAVGECAEHNG--RVYG-LVAPLYEQAKVLADHICG 300 (785)
T ss_pred -CCEEECCCcccCCCCEEEeeecceeCC--cccc-cHHHHHHHHHHHHHHhcC
Confidence 334566788899999999999986421 1112 233446778888888763
No 177
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.15 E-value=2.3e-10 Score=111.57 Aligned_cols=123 Identities=20% Similarity=0.353 Sum_probs=86.5
Q ss_pred EEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC--------ccee-----------e-c--------------chHH
Q 039605 110 VVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA--------SGSV-----------V-R--------------KPAH 155 (352)
Q Consensus 110 vIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~--------~~~~-----------~-~--------------~~~~ 155 (352)
+|||||++|++||+.|+++ |++|+|+||++..|+. ++.. + . ....
T Consensus 1 vIIGgG~aGl~aAi~aa~~-G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~ 79 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE-GLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLI 79 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc-CCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHH
Confidence 5999999999999999999 9999999999876642 1000 0 0 0123
Q ss_pred HHHHHcCCccccCC-C--eEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCC
Q 039605 156 LFLDELGIDYDEQD-N--YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCM 232 (352)
Q Consensus 156 ~~l~~~Gi~~~~~~-~--~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g 232 (352)
+|++++|+++.... . |........+.+.+.+.+. +.|+++++++.+.++..+++.+ .+.++
T Consensus 80 ~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~-~~gv~i~~~~~V~~i~~~~~~~-~v~~~-------------- 143 (400)
T TIGR00275 80 DFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELK-ELGVEILTNSKVKSIKKDDNGF-GVETS-------------- 143 (400)
T ss_pred HHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHH-HCCCEEEeCCEEEEEEecCCeE-EEEEC--------------
Confidence 56777887765431 1 1122344667777777776 5699999999999997765533 44442
Q ss_pred CCeEEEeCEEEEccCCCC
Q 039605 233 DPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 233 ~~~~i~A~~VIlAtG~~~ 250 (352)
..++.+|.||+|+|+.+
T Consensus 144 -~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 144 -GGEYEADKVILATGGLS 160 (400)
T ss_pred -CcEEEcCEEEECCCCcc
Confidence 14689999999999865
No 178
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.15 E-value=1.3e-09 Score=108.12 Aligned_cols=158 Identities=17% Similarity=0.149 Sum_probs=107.2
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-+++|||+|+.|+.+|..+.+. |.+|+|+|+.+.+.. ....++.+.+.+
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~ll~------------------------------~~d~e~~~~l~~ 219 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRL-GTKVTIVEMAPQLLP------------------------------GEDEDIAHILRE 219 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCcCc------------------------------cccHHHHHHHHH
Confidence 3799999999999999999999 999999998764311 012344455555
Q ss_pred HHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCccccccc
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDMN 266 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~~ 266 (352)
.+. +.|+++++++.+.++..++..+. +.. + ++..++.+|.||+|+|..+.....+. ...++..+
T Consensus 220 ~L~-~~GI~i~~~~~V~~i~~~~~~v~-~~~-~------------g~~~~i~~D~vivA~G~~p~~~~l~l-~~~gv~~~ 283 (458)
T PRK06912 220 KLE-NDGVKIFTGAALKGLNSYKKQAL-FEY-E------------GSIQEVNAEFVLVSVGRKPRVQQLNL-EKAGVQFS 283 (458)
T ss_pred HHH-HCCCEEEECCEEEEEEEcCCEEE-EEE-C------------CceEEEEeCEEEEecCCccCCCCCCc-hhcCceec
Confidence 555 56999999999999876544321 211 1 12357999999999997654321111 11122232
Q ss_pred cccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHH
Q 039605 267 TAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLAL 318 (352)
Q Consensus 267 ~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~ 318 (352)
.....+.+++++..|++|++||+... +. ....+..+|..||..+.
T Consensus 284 ~~gi~Vd~~~~ts~~~VyA~GD~~~~----~~---la~~A~~~g~~aa~~~~ 328 (458)
T PRK06912 284 NKGISVNEHMQTNVPHIYACGDVIGG----IQ---LAHVAFHEGTTAALHAS 328 (458)
T ss_pred CCCEEeCCCeecCCCCEEEEeecCCC----cc---cHHHHHHHHHHHHHHHc
Confidence 22345667788899999999999742 12 23455788999998875
No 179
>PRK13748 putative mercuric reductase; Provisional
Probab=99.15 E-value=1.1e-09 Score=111.32 Aligned_cols=155 Identities=14% Similarity=0.159 Sum_probs=107.4
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-.++|||+|..|+.+|..|++. |.+|+||++..... ....++...+.+
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~~l~-------------------------------~~d~~~~~~l~~ 318 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARL-GSKVTILARSTLFF-------------------------------REDPAIGEAVTA 318 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCEEEEEecCcccc-------------------------------ccCHHHHHHHHH
Confidence 3799999999999999999999 99999999753210 011334444455
Q ss_pred HHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCccccccc
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDMN 266 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~~ 266 (352)
.+. +.|+++++++.+.++..+++.+. +...+ .++.+|.||+|+|..+.....+. ...++..+
T Consensus 319 ~l~-~~gI~i~~~~~v~~i~~~~~~~~-v~~~~---------------~~i~~D~vi~a~G~~pn~~~l~l-~~~g~~~~ 380 (561)
T PRK13748 319 AFR-AEGIEVLEHTQASQVAHVDGEFV-LTTGH---------------GELRADKLLVATGRAPNTRSLAL-DAAGVTVN 380 (561)
T ss_pred HHH-HCCCEEEcCCEEEEEEecCCEEE-EEecC---------------CeEEeCEEEEccCCCcCCCCcCc-hhcCceEC
Confidence 554 67999999999999887655432 32211 36999999999997654422111 11223333
Q ss_pred -cccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHH
Q 039605 267 -TAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLAL 318 (352)
Q Consensus 267 -~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~ 318 (352)
.+...+.++++++.|++|++||+.... .. ...++.+|+.||..|.
T Consensus 381 ~~g~i~vd~~~~Ts~~~IyA~GD~~~~~----~~---~~~A~~~g~~aa~~i~ 426 (561)
T PRK13748 381 AQGAIVIDQGMRTSVPHIYAAGDCTDQP----QF---VYVAAAAGTRAAINMT 426 (561)
T ss_pred CCCCEeECCCcccCCCCEEEeeecCCCc----cc---hhHHHHHHHHHHHHHc
Confidence 355667788999999999999998532 11 2234678999999986
No 180
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.15 E-value=1.5e-09 Score=111.30 Aligned_cols=64 Identities=17% Similarity=0.088 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHcCCCcEEEccceeEEEEEe--CCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 177 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 177 ~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
...+...+.+.+. +.|++++++++|+++..+ +++++++.+.+. .+ ++..++.++.||+|+|.|+
T Consensus 231 p~rl~~al~~~A~-~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~------~t---g~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 231 DSRLNVALACTAA-LAGAAVLNYAEVVSLIKDESTGRIVGARVRDN------LT---GKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHH-hCCcEEEeccEEEEEEEecCCCcEEEEEEEEC------CC---CcEEEEEeCEEEECCCHhH
Confidence 3345566666665 569999999999999887 478888776331 11 1234799999999999986
No 181
>PRK07846 mycothione reductase; Reviewed
Probab=99.15 E-value=1.6e-09 Score=107.18 Aligned_cols=157 Identities=14% Similarity=0.100 Sum_probs=107.6
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-+++|||+|..|+.+|..|++. |.+|+|||+.+.+.. ....++.+.+.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~ll~------------------------------~~d~~~~~~l~- 214 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSAL-GVRVTVVNRSGRLLR------------------------------HLDDDISERFT- 214 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCcccc------------------------------ccCHHHHHHHH-
Confidence 4899999999999999999999 999999999764311 01123333332
Q ss_pred HHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcccccc-
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDM- 265 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~- 265 (352)
++. +.+++++.++++.++..+++.+. +.+.+ ..++.+|.||+|+|..+.....+. ...++..
T Consensus 215 ~l~-~~~v~i~~~~~v~~i~~~~~~v~-v~~~~--------------g~~i~~D~vl~a~G~~pn~~~l~~-~~~gl~~~ 277 (451)
T PRK07846 215 ELA-SKRWDVRLGRNVVGVSQDGSGVT-LRLDD--------------GSTVEADVLLVATGRVPNGDLLDA-AAAGVDVD 277 (451)
T ss_pred HHH-hcCeEEEeCCEEEEEEEcCCEEE-EEECC--------------CcEeecCEEEEEECCccCccccCc-hhcCceEC
Confidence 333 35799999999999976655432 33322 257999999999997654432111 1122333
Q ss_pred ccccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHH
Q 039605 266 NTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 266 ~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
+.+...+.+++++..|++|++||+.... +....+..+|+.+|+.|+.
T Consensus 278 ~~G~i~Vd~~~~Ts~p~IyA~GD~~~~~-------~l~~~A~~~g~~~a~ni~~ 324 (451)
T PRK07846 278 EDGRVVVDEYQRTSAEGVFALGDVSSPY-------QLKHVANHEARVVQHNLLH 324 (451)
T ss_pred CCCcEeECCCcccCCCCEEEEeecCCCc-------cChhHHHHHHHHHHHHHcC
Confidence 3466667788899999999999998531 1233456788999988863
No 182
>PRK06996 hypothetical protein; Provisional
Probab=99.14 E-value=1.3e-09 Score=106.18 Aligned_cols=130 Identities=15% Similarity=0.267 Sum_probs=91.5
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCC----CcEEEEeccCCCC---CCcceeecchHHHHHHHcCCccccC---------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPN----VQVAIIEQSVSPG---GASGSVVRKPAHLFLDELGIDYDEQ--------- 168 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G----~kV~viEk~~~~G---G~~~~~~~~~~~~~l~~~Gi~~~~~--------- 168 (352)
.++||+||||||+|+++|+.|++. | ++|+|||+.+... ......+.....+.|+++|+.-...
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~-g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~ 88 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARR-SATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVS 88 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcC-CCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEe
Confidence 468999999999999999999998 6 5799999975432 2245556667778888887531100
Q ss_pred --C---------------CeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCC
Q 039605 169 --D---------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSC 231 (352)
Q Consensus 169 --~---------------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~ 231 (352)
. .+.+..+..++.+.|.+++. +.+++++++++++++..+++.+. +...++ +
T Consensus 89 ~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~-~~g~~~~~~~~v~~~~~~~~~v~-v~~~~~-------~--- 156 (398)
T PRK06996 89 QRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVR-GTPVRWLTSTTAHAPAQDADGVT-LALGTP-------Q--- 156 (398)
T ss_pred cCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHH-hCCCEEEcCCeeeeeeecCCeEE-EEECCC-------C---
Confidence 0 01123445677788888876 45899999999999877665543 333221 1
Q ss_pred CCCeEEEeCEEEEccCC
Q 039605 232 MDPNVMEAKVVVSSCGH 248 (352)
Q Consensus 232 g~~~~i~A~~VIlAtG~ 248 (352)
...+++||+||.|+|.
T Consensus 157 -g~~~i~a~lvIgADG~ 172 (398)
T PRK06996 157 -GARTLRARIAVQAEGG 172 (398)
T ss_pred -cceEEeeeEEEECCCC
Confidence 1257999999999996
No 183
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.14 E-value=1.9e-09 Score=106.95 Aligned_cols=160 Identities=18% Similarity=0.227 Sum_probs=109.7
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-.++|||+|..|+..|..|++. |.+|+++|+.+.... ....++...+.+
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~------------------------------~~d~~~~~~~~~ 218 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRL-GVKVTVFERGDRILP------------------------------LEDPEVSKQAQK 218 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCcCc------------------------------chhHHHHHHHHH
Confidence 4799999999999999999999 999999999864421 012334444455
Q ss_pred HHHcCCCcEEEccceeEEEEEeCC-EEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcccccc
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGN-RVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDM 265 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g-~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~ 265 (352)
.+. +. +++++++.+.++..+++ ++. +...+ ++..++.+|.||+|+|..+.....+. ...++..
T Consensus 219 ~l~-~~-I~i~~~~~v~~i~~~~~~~v~-~~~~~------------~~~~~i~~D~vi~a~G~~p~~~~l~l-~~~g~~~ 282 (460)
T PRK06292 219 ILS-KE-FKIKLGAKVTSVEKSGDEKVE-ELEKG------------GKTETIEADYVLVATGRRPNTDGLGL-ENTGIEL 282 (460)
T ss_pred HHh-hc-cEEEcCCEEEEEEEcCCceEE-EEEcC------------CceEEEEeCEEEEccCCccCCCCCCc-HhhCCEe
Confidence 554 55 99999999999976544 221 11111 12467999999999997554332111 1122333
Q ss_pred c-cccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHH
Q 039605 266 N-TAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKS 320 (352)
Q Consensus 266 ~-~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~ 320 (352)
+ .+...+.+++++..|++|++||+.... +....++.+|..||..|..+
T Consensus 283 ~~~g~i~vd~~~~ts~~~IyA~GD~~~~~-------~~~~~A~~qg~~aa~~i~~~ 331 (460)
T PRK06292 283 DERGRPVVDEHTQTSVPGIYAAGDVNGKP-------PLLHEAADEGRIAAENAAGD 331 (460)
T ss_pred cCCCcEeECCCcccCCCCEEEEEecCCCc-------cchhHHHHHHHHHHHHhcCC
Confidence 2 455566788899999999999997431 12345588999999999764
No 184
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.14 E-value=9e-10 Score=116.20 Aligned_cols=160 Identities=16% Similarity=0.093 Sum_probs=108.4
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHHH
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMSK 187 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~~ 187 (352)
.++|||||..|+.+|..|++. |.+|+|||+.+.+-. . ....+....+.+.
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~-G~~VtvVe~~~~ll~-----------~------------------~ld~~~~~~l~~~ 196 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNL-GVETHVIEFAPMLMA-----------E------------------QLDQMGGEQLRRK 196 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEeccccchh-----------h------------------hcCHHHHHHHHHH
Confidence 699999999999999999999 999999998763210 0 0012333444445
Q ss_pred HHcCCCcEEEccceeEEEEEeC-CEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCccccccc
Q 039605 188 LLARPNVKLFNAVAAEDLIVKG-NRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDMN 266 (352)
Q Consensus 188 ~~~~~gv~i~~~t~v~~l~~~~-g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~~ 266 (352)
+. +.||++++++.+.++..++ +....+.+.+ ..++.+|.||+|+|..+... +....++..+
T Consensus 197 L~-~~GV~v~~~~~v~~I~~~~~~~~~~v~~~d--------------G~~i~~D~Vv~A~G~rPn~~---L~~~~Gl~~~ 258 (847)
T PRK14989 197 IE-SMGVRVHTSKNTLEIVQEGVEARKTMRFAD--------------GSELEVDFIVFSTGIRPQDK---LATQCGLAVA 258 (847)
T ss_pred HH-HCCCEEEcCCeEEEEEecCCCceEEEEECC--------------CCEEEcCEEEECCCcccCch---HHhhcCccCC
Confidence 54 6799999999999997643 3344455533 25799999999999665432 2222233333
Q ss_pred -cccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHH
Q 039605 267 -TAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLAL 318 (352)
Q Consensus 267 -~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~ 318 (352)
.|.+.|.++++++.|++|++||++...+. ..+ .+..+..+|+.||..+.
T Consensus 259 ~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~--~~g-l~~~a~~~a~vaa~~i~ 308 (847)
T PRK14989 259 PRGGIVINDSCQTSDPDIYAIGECASWNNR--VFG-LVAPGYKMAQVAVDHLL 308 (847)
T ss_pred CCCcEEECCCCcCCCCCEEEeecceeEcCc--ccc-cHHHHHHHHHHHHHHhc
Confidence 35667778899999999999999865321 112 23334566777777665
No 185
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.13 E-value=9.1e-10 Score=106.29 Aligned_cols=35 Identities=40% Similarity=0.584 Sum_probs=32.5
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSP 142 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~ 142 (352)
|||+|||||++|+++|++|+++ |++|+|||+....
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~-g~~V~l~e~~~~~ 35 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKH-GKKTLLLEQFDLP 35 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCC
Confidence 5999999999999999999999 9999999997543
No 186
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.13 E-value=2.1e-10 Score=114.28 Aligned_cols=129 Identities=16% Similarity=0.281 Sum_probs=75.3
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHH------------HHHcCCccccC-CCeE
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLF------------LDELGIDYDEQ-DNYV 172 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~------------l~~~Gi~~~~~-~~~~ 172 (352)
+|||+||||||+|+.||+.|++. |++|+|||+. .+||.+...-.-|.+.+ ...+|+..... .++.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL-GLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA 81 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 68999999999999999999999 9999999996 67877543332333221 22345432211 0110
Q ss_pred E-EechHHHHHHH---HHHHHcCCCcEEEccceeEEEEEe-----CCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEE
Q 039605 173 V-IKHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVK-----GNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVV 243 (352)
Q Consensus 173 ~-~~~~~~~~~~L---~~~~~~~~gv~i~~~t~v~~l~~~-----~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VI 243 (352)
. ..+.......+ +..+.++.|++++.+. +..+..+ ++.+ .+...+ |+..++.+|++|
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-a~~i~~~~~~~~~~~~-~v~~~~------------g~~~~~~~d~lV 147 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHGI-GRILGPSIFSPMPGTV-SVETET------------GENEMIIPENLL 147 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEeCCCCCcCCceEE-EEEeCC------------CceEEEEcCEEE
Confidence 0 00111121212 2333446799999883 4433222 1122 233221 123579999999
Q ss_pred EccCCCC
Q 039605 244 SSCGHDG 250 (352)
Q Consensus 244 lAtG~~~ 250 (352)
+|||...
T Consensus 148 iATGs~p 154 (472)
T PRK05976 148 IATGSRP 154 (472)
T ss_pred EeCCCCC
Confidence 9999865
No 187
>PRK05868 hypothetical protein; Validated
Probab=99.13 E-value=1.3e-09 Score=105.21 Aligned_cols=126 Identities=21% Similarity=0.257 Sum_probs=84.5
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCC-CcceeecchHHHHHHHcCCccc---------------cCCCe
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGG-ASGSVVRKPAHLFLDELGIDYD---------------EQDNY 171 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG-~~~~~~~~~~~~~l~~~Gi~~~---------------~~~~~ 171 (352)
||+|||||++|+++|+.|+++ |++|+|||+.+.... +....+.....+.|+++|+.-. ..+..
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~-G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRH-GYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 899999999999999999999 999999999876542 1223344455666666664210 00000
Q ss_pred -----------------EEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCC
Q 039605 172 -----------------VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDP 234 (352)
Q Consensus 172 -----------------~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~ 234 (352)
....+..++.+.|.+.. ..|++++++++++++..+++.+. +.+.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~--~~~v~i~~~~~v~~i~~~~~~v~-v~~~dg-------------- 144 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT--QPSVEYLFDDSISTLQDDGDSVR-VTFERA-------------- 144 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhc--cCCcEEEeCCEEEEEEecCCeEE-EEECCC--------------
Confidence 01122334444433322 46899999999999987666553 545332
Q ss_pred eEEEeCEEEEccCCCCC
Q 039605 235 NVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 235 ~~i~A~~VIlAtG~~~~ 251 (352)
.++++|.||.|+|.+|.
T Consensus 145 ~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 145 AAREFDLVIGADGLHSN 161 (372)
T ss_pred CeEEeCEEEECCCCCch
Confidence 47899999999998874
No 188
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.13 E-value=9.8e-10 Score=106.51 Aligned_cols=126 Identities=18% Similarity=0.183 Sum_probs=80.4
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHH-----HHHHHcCCc----ccc-C-----CCeE
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAH-----LFLDELGID----YDE-Q-----DNYV 172 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~-----~~l~~~Gi~----~~~-~-----~~~~ 172 (352)
||+|||||++|+++|+.|++. |++|+|||+.+..++.....+..... ..+....+. +.. . ...+
T Consensus 1 DviIiGaG~AGl~~A~~la~~-g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP-GLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAY 79 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCce
Confidence 899999999999999999999 99999999987666542221111000 001010000 000 0 0011
Q ss_pred EEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 173 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 173 ~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
.......+.+.|.+++.+ .|++++. .++..+..+++....+.+.+ ..+++|+.||+|+|.++
T Consensus 80 ~~i~~~~l~~~l~~~~~~-~gv~~~~-~~v~~i~~~~~~~~~v~~~~--------------g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 80 GSVDSTRLHEELLQKCPE-GGVLWLE-RKAIHAEADGVALSTVYCAG--------------GQRIQARLVIDARGFGP 141 (388)
T ss_pred eEEcHHHHHHHHHHHHHh-cCcEEEc-cEEEEEEecCCceeEEEeCC--------------CCEEEeCEEEECCCCch
Confidence 224456777888887764 4888874 47888877644444455532 25899999999999876
No 189
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.12 E-value=7e-10 Score=106.93 Aligned_cols=36 Identities=28% Similarity=0.582 Sum_probs=33.5
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSP 142 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~ 142 (352)
++||+|||||+.|+++|++|+++ |++|+|||++...
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie~~~~~ 38 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDRFMPP 38 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-CCeEEEEecccCC
Confidence 68999999999999999999999 9999999998643
No 190
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.12 E-value=1.3e-09 Score=108.26 Aligned_cols=173 Identities=17% Similarity=0.135 Sum_probs=111.0
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCC-cEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNV-QVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIM 185 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~-kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~ 185 (352)
-.|+|||+|..|+-+|..|.+. |. +|+++++..... ++ .... ..
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~-G~~~Vtlv~~~~~~~-------------------~~-----------~~~~----~~ 318 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRL-GAESVTIVYRRGREE-------------------MP-----------ASEE----EV 318 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCCeEEEeeecCccc-------------------CC-----------CCHH----HH
Confidence 4799999999999999999998 88 899999864210 00 0011 12
Q ss_pred HHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCC-----CCCCCeEEEeCEEEEccCCCCCCCCCCCCCc
Q 039605 186 SKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQ-----SCMDPNVMEAKVVVSSCGHDGPFGATGVRGM 260 (352)
Q Consensus 186 ~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~-----~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~ 260 (352)
+.+. +.|+++++++.+.++..+++++.++.+..........++ ..++..++.+|.||+|.|..+..... ...
T Consensus 319 ~~~~-~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~--~~~ 395 (457)
T PRK11749 319 EHAK-EEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLIL--STT 395 (457)
T ss_pred HHHH-HCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhh--ccc
Confidence 3333 579999999999999877665555654210000000000 01245689999999999976542111 111
Q ss_pred cccccc-cccceeec-ccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCCC
Q 039605 261 KALDMN-TAEDAIVK-LTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQP 324 (352)
Q Consensus 261 ~~~~~~-~g~~~vv~-~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~~ 324 (352)
.++..+ .+...+.+ +..+..|++|++||+... ++ .+..++.+|+.||..|.++|.++
T Consensus 396 ~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~----~~---~~~~A~~~G~~aA~~I~~~l~g~ 454 (457)
T PRK11749 396 PGLELNRWGTIIADDETGRTSLPGVFAGGDIVTG----AA---TVVWAVGDGKDAAEAIHEYLEGA 454 (457)
T ss_pred cCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCC----ch---HHHHHHHHHHHHHHHHHHHHhcc
Confidence 122222 34444444 567889999999999832 11 34456889999999999999764
No 191
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.11 E-value=2.5e-09 Score=105.92 Aligned_cols=157 Identities=12% Similarity=0.100 Sum_probs=106.8
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-.++|||+|..|+..|..|++. |.+|++||+.+.+.. ....++...+.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~ll~------------------------------~~d~~~~~~l~- 217 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSAL-GTRVTIVNRSTKLLR------------------------------HLDEDISDRFT- 217 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCcccc------------------------------ccCHHHHHHHH-
Confidence 3799999999999999999999 999999998764311 00122323333
Q ss_pred HHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcccccc-
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDM- 265 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~- 265 (352)
++. +.+++++.++.+.++..+++.+. +.+.+ ..++.+|.||+|+|..+.....+. ...++..
T Consensus 218 ~~~-~~gI~i~~~~~V~~i~~~~~~v~-v~~~~--------------g~~i~~D~vl~a~G~~pn~~~l~~-~~~gl~~~ 280 (452)
T TIGR03452 218 EIA-KKKWDIRLGRNVTAVEQDGDGVT-LTLDD--------------GSTVTADVLLVATGRVPNGDLLDA-EAAGVEVD 280 (452)
T ss_pred HHH-hcCCEEEeCCEEEEEEEcCCeEE-EEEcC--------------CCEEEcCEEEEeeccCcCCCCcCc-hhcCeeEC
Confidence 333 35799999999999987655432 33322 147999999999997654322111 1122333
Q ss_pred ccccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHH
Q 039605 266 NTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 266 ~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
+.+...+.+++++..|++|++||+.... . ....+..+|..+|+.|..
T Consensus 281 ~~G~i~vd~~~~Ts~~~IyA~GD~~~~~----~---l~~~A~~~g~~~a~ni~~ 327 (452)
T TIGR03452 281 EDGRIKVDEYGRTSARGVWALGDVSSPY----Q---LKHVANAEARVVKHNLLH 327 (452)
T ss_pred CCCcEeeCCCcccCCCCEEEeecccCcc----c---ChhHHHHHHHHHHHHhcC
Confidence 3455666788899999999999997531 1 223446689999988864
No 192
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.11 E-value=4.4e-09 Score=103.39 Aligned_cols=161 Identities=18% Similarity=0.172 Sum_probs=109.9
Q ss_pred cEEEECCcHHHHHHHHHHhc--------------CCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEE
Q 039605 108 DVVVVGAGSAGLSCAYEISK--------------NPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVV 173 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~--------------~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~ 173 (352)
.++|||||+.|+..|..|++ . +.+|+|||+++.+...
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~-~~~Vtlv~~~~~ll~~---------------------------- 225 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVE-ECKVTVLEAGSEVLGS---------------------------- 225 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccc-cCEEEEEcCCCccccc----------------------------
Confidence 79999999999999999875 3 7899999987643110
Q ss_pred EechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCC
Q 039605 174 IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFG 253 (352)
Q Consensus 174 ~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~ 253 (352)
......+.+.+.+. +.||+++.++.+.++.. + .+.+.+ ..++.+|.+|.++|..++..
T Consensus 226 --~~~~~~~~~~~~L~-~~gV~v~~~~~v~~v~~--~---~v~~~~--------------g~~i~~d~vi~~~G~~~~~~ 283 (424)
T PTZ00318 226 --FDQALRKYGQRRLR-RLGVDIRTKTAVKEVLD--K---EVVLKD--------------GEVIPTGLVVWSTGVGPGPL 283 (424)
T ss_pred --CCHHHHHHHHHHHH-HCCCEEEeCCeEEEEeC--C---EEEECC--------------CCEEEccEEEEccCCCCcch
Confidence 11233344445554 67999999999988853 2 244433 25899999999999654321
Q ss_pred CCCCCCccccccc-cccceeecccc-cccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCCCC
Q 039605 254 ATGVRGMKALDMN-TAEDAIVKLTR-EIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPN 325 (352)
Q Consensus 254 ~~g~~g~~~~~~~-~g~~~vv~~~~-~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~~~ 325 (352)
. ...++..+ .|.+.+.++++ +..|++|++||++...+ ....++...++.+|..+|+.|.+.+.+..
T Consensus 284 ~----~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~--~~~~~~~~~A~~qg~~~A~ni~~~l~g~~ 351 (424)
T PTZ00318 284 T----KQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEE--RPLPTLAQVASQQGVYLAKEFNNELKGKP 351 (424)
T ss_pred h----hhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCC--CCCCCchHHHHHHHHHHHHHHHHHhcCCC
Confidence 1 11123322 35656666666 57899999999986422 11223445568899999999999997654
No 193
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.11 E-value=2.4e-10 Score=112.79 Aligned_cols=122 Identities=23% Similarity=0.337 Sum_probs=69.9
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCC-CCCCcceeecchHHHHHH--HcCCccccCCCeEEEechHHHHH
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVS-PGGASGSVVRKPAHLFLD--ELGIDYDEQDNYVVIKHAALFTS 182 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~-~GG~~~~~~~~~~~~~l~--~~Gi~~~~~~~~~~~~~~~~~~~ 182 (352)
+|||+||||||+|++||+.|++. |++|+||||.+. .||.+-....-|.+.++. +.++++... .........
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~-g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~-----~~~~~~~~~ 76 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASA-GKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQV-----MATKNTVTS 76 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC-CCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHH-----HHHHHHHHH
Confidence 68999999999999999999999 999999999864 577532222223332221 222222110 001111111
Q ss_pred HH---HHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 183 TI---MSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 183 ~L---~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
.+ ......+.|++++.++. .. .++.++ .+.... +..++++|+||+|||..+
T Consensus 77 ~~~~~~~~~~~~~gV~~~~g~~-~~--~~~~~v-~v~~~~-------------~~~~~~~d~vViATGs~~ 130 (438)
T PRK07251 77 RLRGKNYAMLAGSGVDLYDAEA-HF--VSNKVI-EVQAGD-------------EKIELTAETIVINTGAVS 130 (438)
T ss_pred HHHHHHHHHHHhCCCEEEEEEE-EE--ccCCEE-EEeeCC-------------CcEEEEcCEEEEeCCCCC
Confidence 11 11223356888887742 11 122222 121100 135799999999999865
No 194
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.11 E-value=3.4e-10 Score=112.38 Aligned_cols=41 Identities=34% Similarity=0.546 Sum_probs=37.0
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcc
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASG 147 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~ 147 (352)
.+|||+||||||+|+.||+.|++. |++|+|||+.. .||.+.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~-G~~V~liE~~~-~GG~c~ 43 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKEK-LGGTCL 43 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHC-CCcEEEEeccc-ccccee
Confidence 368999999999999999999999 99999999987 777643
No 195
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.11 E-value=2.6e-10 Score=112.86 Aligned_cols=122 Identities=18% Similarity=0.251 Sum_probs=72.0
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHH------------HHHHHcCCccccCCCeEE
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAH------------LFLDELGIDYDEQDNYVV 173 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~------------~~l~~~Gi~~~~~~~~~~ 173 (352)
+|||+||||||+|+.||+.|++. |++|+||||. .+||.+...-.-|.+ +....+|++......+.+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 79 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEH-GAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNW 79 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-CCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCH
Confidence 68999999999999999999999 9999999996 577764322222211 122345554321111100
Q ss_pred ---EechHHHHHHH---HHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccC
Q 039605 174 ---IKHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCG 247 (352)
Q Consensus 174 ---~~~~~~~~~~L---~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG 247 (352)
..+...+.+.+ ++...++.|++++.++... .++..+ .+. ..++.+|+||+|||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~~v---~v~---------------~~~~~~d~vIiAtG 138 (450)
T TIGR01421 80 PELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDGTV---EVN---------------GRDYTAPHILIATG 138 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCEE---EEC---------------CEEEEeCEEEEecC
Confidence 00111222221 2233345699999886431 223322 221 24799999999999
Q ss_pred CCC
Q 039605 248 HDG 250 (352)
Q Consensus 248 ~~~ 250 (352)
..+
T Consensus 139 s~p 141 (450)
T TIGR01421 139 GKP 141 (450)
T ss_pred CCC
Confidence 764
No 196
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.10 E-value=3.2e-09 Score=104.76 Aligned_cols=155 Identities=11% Similarity=0.128 Sum_probs=103.1
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHHH
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMSK 187 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~~ 187 (352)
.|+|||+|..|+.+|..+++. |.+|+|+|+.+.+... ...++...+.+.
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~l~~------------------------------~~~~~~~~~~~~ 207 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKL-GSKVTVLDAASTILPR------------------------------EEPSVAALAKQY 207 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCccCCC------------------------------CCHHHHHHHHHH
Confidence 799999999999999999999 9999999997643210 012333333444
Q ss_pred HHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcccccc-c
Q 039605 188 LLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDM-N 266 (352)
Q Consensus 188 ~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~-~ 266 (352)
+. +.|+++++++.+.++..+++++. +.. + ..++.+|.||+|+|..+.....+..+. .+.. .
T Consensus 208 l~-~~GI~i~~~~~V~~i~~~~~~v~-v~~-~--------------g~~i~~D~viva~G~~p~~~~l~l~~~-~~~~~~ 269 (438)
T PRK07251 208 ME-EDGITFLLNAHTTEVKNDGDQVL-VVT-E--------------DETYRFDALLYATGRKPNTEPLGLENT-DIELTE 269 (438)
T ss_pred HH-HcCCEEEcCCEEEEEEecCCEEE-EEE-C--------------CeEEEcCEEEEeeCCCCCcccCCchhc-CcEECC
Confidence 43 67999999999999987655442 222 1 247999999999997654322222111 2222 3
Q ss_pred cccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHH
Q 039605 267 TAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLAL 318 (352)
Q Consensus 267 ~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~ 318 (352)
.+...+.+++++..|++|++||+.... .. .-.++.+|+.++..+.
T Consensus 270 ~g~i~vd~~~~t~~~~IyaiGD~~~~~----~~---~~~a~~~~~~~~~~~~ 314 (438)
T PRK07251 270 RGAIKVDDYCQTSVPGVFAVGDVNGGP----QF---TYISLDDFRIVFGYLT 314 (438)
T ss_pred CCcEEECCCcccCCCCEEEeeecCCCc----cc---HhHHHHHHHHHHHHHc
Confidence 355566677888999999999987421 11 1123556777776665
No 197
>PRK14694 putative mercuric reductase; Provisional
Probab=99.09 E-value=6.5e-10 Score=110.59 Aligned_cols=43 Identities=21% Similarity=0.519 Sum_probs=37.9
Q ss_pred CCCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcc
Q 039605 103 THADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASG 147 (352)
Q Consensus 103 ~~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~ 147 (352)
...+|||+|||||++|+++|+.|++. |++|+|||++ .+||+|.
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~-g~~v~lie~~-~~GGtc~ 45 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATER-GARVTLIERG-TIGGTCV 45 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEEcc-cccccee
Confidence 34589999999999999999999999 9999999997 5777643
No 198
>PRK06753 hypothetical protein; Provisional
Probab=99.09 E-value=1.3e-09 Score=104.96 Aligned_cols=125 Identities=15% Similarity=0.195 Sum_probs=83.2
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCC-CcceeecchHHHHHHHcCCc---------cc------cCCCe
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGG-ASGSVVRKPAHLFLDELGID---------YD------EQDNY 171 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG-~~~~~~~~~~~~~l~~~Gi~---------~~------~~~~~ 171 (352)
||+|||||++|+++|+.|++. |++|+|+||.+.... +....+.....+.|+.+|+. .. ..+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~-g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~ 80 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ-GHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTL 80 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCE
Confidence 799999999999999999999 999999999876431 12333444455556555542 11 00110
Q ss_pred -----------EEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeC
Q 039605 172 -----------VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAK 240 (352)
Q Consensus 172 -----------~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~ 240 (352)
....+...+.+.|++.+. +.+++++++++++..+++++. +.+.+ ..++.+|
T Consensus 81 ~~~~~~~~~~~~~~i~R~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~-v~~~~--------------g~~~~~~ 142 (373)
T PRK06753 81 LNKVKLKSNTLNVTLHRQTLIDIIKSYVK---EDAIFTGKEVTKIENETDKVT-IHFAD--------------GESEAFD 142 (373)
T ss_pred EeecccccCCccccccHHHHHHHHHHhCC---CceEEECCEEEEEEecCCcEE-EEECC--------------CCEEecC
Confidence 011233445555555442 468999999999987766553 44432 2578999
Q ss_pred EEEEccCCCCC
Q 039605 241 VVVSSCGHDGP 251 (352)
Q Consensus 241 ~VIlAtG~~~~ 251 (352)
.||.|+|.++.
T Consensus 143 ~vigadG~~S~ 153 (373)
T PRK06753 143 LCIGADGIHSK 153 (373)
T ss_pred EEEECCCcchH
Confidence 99999998763
No 199
>PTZ00058 glutathione reductase; Provisional
Probab=99.09 E-value=6.7e-10 Score=112.24 Aligned_cols=40 Identities=33% Similarity=0.627 Sum_probs=36.4
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCc
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGAS 146 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~ 146 (352)
.+|||+|||||++|+.||+.|++. |++|+||||. ..||+|
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~-G~~ValIEk~-~~GGtC 86 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARN-KAKVALVEKD-YLGGTC 86 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHc-CCeEEEEecc-cccccc
Confidence 579999999999999999999999 9999999997 567763
No 200
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.09 E-value=1.6e-09 Score=107.49 Aligned_cols=37 Identities=32% Similarity=0.585 Sum_probs=33.1
Q ss_pred CCccEEEECCcHHHHHHHHHHhcC-CCCcEEEEeccCC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKN-PNVQVAIIEQSVS 141 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~-~G~kV~viEk~~~ 141 (352)
.++||+|||||.+|+++|++|+++ +|++|+|||++..
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 468999999999999999999985 4899999999754
No 201
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.08 E-value=1.4e-09 Score=106.91 Aligned_cols=162 Identities=17% Similarity=0.157 Sum_probs=108.2
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-.|+|||+|+.|+.+|..|++. |.+|+++++.+..... ....+....+.+
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~~~~-----------------------------~~~~~~~~~~~~ 187 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRER-GKNVTLIHRSERILNK-----------------------------LFDEEMNQIVEE 187 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECCcccCcc-----------------------------ccCHHHHHHHHH
Confidence 4799999999999999999999 9999999987643100 001233344444
Q ss_pred HHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCccccccc
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDMN 266 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~~ 266 (352)
.+. +.|+++++++.+.++..++ .+ +...+ ..++.+|.||+|+|..+.... ....++..+
T Consensus 188 ~l~-~~gV~v~~~~~v~~i~~~~-~~--v~~~~--------------g~~i~~D~vi~a~G~~p~~~~---l~~~gl~~~ 246 (427)
T TIGR03385 188 ELK-KHEINLRLNEEVDSIEGEE-RV--KVFTS--------------GGVYQADMVILATGIKPNSEL---AKDSGLKLG 246 (427)
T ss_pred HHH-HcCCEEEeCCEEEEEecCC-CE--EEEcC--------------CCEEEeCEEEECCCccCCHHH---HHhcCcccC
Confidence 444 6799999999999986543 32 23322 247999999999997644221 111122222
Q ss_pred -cccceeecccccccCceeEecchhhhhc---CCCCCCcchhhhhhchHHHHHHHHH
Q 039605 267 -TAEDAIVKLTREIVPGMIVAGMEVAEID---GAPRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 267 -~g~~~vv~~~~~~~pg~~~aG~~~~~~~---g~~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
.|...+.+++++..|++|++||+....+ +.+...+.+..+..+|+.+|+.|..
T Consensus 247 ~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g 303 (427)
T TIGR03385 247 ETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAG 303 (427)
T ss_pred CCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcC
Confidence 3555566778888999999999986432 1112224455667889999998863
No 202
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.07 E-value=5.7e-09 Score=104.16 Aligned_cols=160 Identities=14% Similarity=0.119 Sum_probs=107.4
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHHH
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMSK 187 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~~ 187 (352)
.++|||||..|+.+|..|++. |.+|+|+++..... ....++...+.+.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~l~-------------------------------~~d~~~~~~l~~~ 229 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGI-GLDVTVMVRSILLR-------------------------------GFDQDCANKVGEH 229 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHh-CCcEEEEEeccccc-------------------------------ccCHHHHHHHHHH
Confidence 699999999999999999999 99999999742110 0123444455555
Q ss_pred HHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCccccccc-
Q 039605 188 LLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDMN- 266 (352)
Q Consensus 188 ~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~~- 266 (352)
+. +.|+++++++.+.++...++.+ .+...++ + +..++.+|.||+|+|..+.....++ ...++..+
T Consensus 230 L~-~~gV~i~~~~~v~~v~~~~~~~-~v~~~~~-------~----~~~~i~~D~vl~a~G~~pn~~~l~l-~~~gv~~~~ 295 (484)
T TIGR01438 230 ME-EHGVKFKRQFVPIKVEQIEAKV-KVTFTDS-------T----NGIEEEYDTVLLAIGRDACTRKLNL-ENVGVKINK 295 (484)
T ss_pred HH-HcCCEEEeCceEEEEEEcCCeE-EEEEecC-------C----cceEEEeCEEEEEecCCcCCCcCCc-ccccceecC
Confidence 54 5699999999988887655543 2333221 0 1247999999999997654322111 12223332
Q ss_pred -cccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHH
Q 039605 267 -TAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 267 -~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
.+.+.+.+++++..|++|++||+.... +. ....+..+|+.+|+.++.
T Consensus 296 ~~G~I~Vd~~~~Ts~p~IyA~GDv~~~~---~~---l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 296 KTGKIPADEEEQTNVPYIYAVGDILEDK---QE---LTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred cCCeEecCCCcccCCCCEEEEEEecCCC---cc---chHHHHHHHHHHHHHHhc
Confidence 255556678889999999999997421 11 233457789999998863
No 203
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.07 E-value=2.4e-09 Score=107.64 Aligned_cols=128 Identities=23% Similarity=0.352 Sum_probs=84.0
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC--cceeec----chHHHHH-----------HHcCCccccC-
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA--SGSVVR----KPAHLFL-----------DELGIDYDEQ- 168 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~--~~~~~~----~~~~~~l-----------~~~Gi~~~~~- 168 (352)
|||+|||+|++|+.+|..+++. |.+|+|||+.....|. +..... ....+.+ +..++.+...
T Consensus 1 yDViVIGaG~AGl~aA~ala~~-G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln 79 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM-GAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLN 79 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecc
Confidence 6999999999999999999999 9999999987433222 110000 0001111 2222322211
Q ss_pred ---CCeEE----EechHHHHHHHHHHHHcCCCcEEEccceeEEEEEe-CCEEEEEEEcccceeccCCCCCCCCCeEEEeC
Q 039605 169 ---DNYVV----IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGIVTNWALVSMNHDSQSCMDPNVMEAK 240 (352)
Q Consensus 169 ---~~~~~----~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~ 240 (352)
+.... ..+...+...+.+.+.+.++++++.+ .+++++.+ ++++.+|.+.++ ..+.|+
T Consensus 80 ~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G--------------~~I~Ad 144 (617)
T TIGR00136 80 SSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDG--------------LKFRAK 144 (617)
T ss_pred cCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCC--------------CEEECC
Confidence 01111 12334566677777776778999876 78888776 678989988542 479999
Q ss_pred EEEEccCCCC
Q 039605 241 VVVSSCGHDG 250 (352)
Q Consensus 241 ~VIlAtG~~~ 250 (352)
.||+|||.|.
T Consensus 145 ~VILATGtfL 154 (617)
T TIGR00136 145 AVIITTGTFL 154 (617)
T ss_pred EEEEccCccc
Confidence 9999999984
No 204
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.06 E-value=5.3e-09 Score=107.56 Aligned_cols=139 Identities=19% Similarity=0.215 Sum_probs=89.2
Q ss_pred CccEEEECCcHHHHHHHHHHhc-CCCCcEEEEeccCCCC-CCcceeecchHHHHHHHcCCccc-------------cC--
Q 039605 106 DTDVVVVGAGSAGLSCAYEISK-NPNVQVAIIEQSVSPG-GASGSVVRKPAHLFLDELGIDYD-------------EQ-- 168 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~-~~G~kV~viEk~~~~G-G~~~~~~~~~~~~~l~~~Gi~~~-------------~~-- 168 (352)
++||+||||||+||++|+.|++ . |++|+|||+.+... .+.+..+.....+.|+.+|+.-. +.
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~-Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~ 110 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFP-DITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD 110 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCC-CCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence 6899999999999999999999 7 99999999986432 12334455566666666654210 00
Q ss_pred C--------------------Ce-EEEechHHHHHHHHHHHHcCC-CcEEEccceeEEEEEeCC--EEEEEEEcccceec
Q 039605 169 D--------------------NY-VVIKHAALFTSTIMSKLLARP-NVKLFNAVAAEDLIVKGN--RVGGIVTNWALVSM 224 (352)
Q Consensus 169 ~--------------------~~-~~~~~~~~~~~~L~~~~~~~~-gv~i~~~t~v~~l~~~~g--~v~gv~~~~g~~~~ 224 (352)
. .+ ....+...+.+.|++.+.+.. ++++.++++++++..++. .-+.+.+.+
T Consensus 111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~----- 185 (634)
T PRK08294 111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRR----- 185 (634)
T ss_pred CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEE-----
Confidence 0 00 012333445567777775432 368889999999987642 212233321
Q ss_pred cCCCCCCCCCeEEEeCEEEEccCCCCC
Q 039605 225 NHDSQSCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 225 ~~~~~~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
.++..+|+.++++||+||.|+|..|.
T Consensus 186 -~~~~~~g~~~tv~A~~lVGaDGa~S~ 211 (634)
T PRK08294 186 -TDGEHEGEEETVRAKYVVGCDGARSR 211 (634)
T ss_pred -CCCCCCCceEEEEeCEEEECCCCchH
Confidence 00001223478999999999999873
No 205
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.05 E-value=2.3e-09 Score=105.74 Aligned_cols=158 Identities=13% Similarity=0.088 Sum_probs=103.7
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-.++|||||..|+.+|..|++. |.+|+|+++.+.+.. ....++...+.+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~~l~~------------------------------~~d~~~~~~l~~ 197 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYER-GLHPTLIHRSDKINK------------------------------LMDADMNQPILD 197 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCcEEEEecccccch------------------------------hcCHHHHHHHHH
Confidence 3799999999999999999999 999999998764321 001334444455
Q ss_pred HHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCccccccc
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDMN 266 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~~ 266 (352)
.+. +.|+++++++.+.++.. . .+.+.+ ..++.+|.||+|+|..+.... ....++..+
T Consensus 198 ~l~-~~gI~i~~~~~v~~i~~--~---~v~~~~--------------g~~~~~D~vl~a~G~~pn~~~---l~~~gl~~~ 254 (438)
T PRK13512 198 ELD-KREIPYRLNEEIDAING--N---EVTFKS--------------GKVEHYDMIIEGVGTHPNSKF---IESSNIKLD 254 (438)
T ss_pred HHH-hcCCEEEECCeEEEEeC--C---EEEECC--------------CCEEEeCEEEECcCCCcChHH---HHhcCcccC
Confidence 554 67999999999998852 2 233322 147899999999997654321 111223332
Q ss_pred -cccceeecccccccCceeEecchhhhhc---CCCCCCcchhhhhhchHHHHHHHH
Q 039605 267 -TAEDAIVKLTREIVPGMIVAGMEVAEID---GAPRMGPTFGAMMISGQKAAHLAL 318 (352)
Q Consensus 267 -~g~~~vv~~~~~~~pg~~~aG~~~~~~~---g~~r~g~~~~~~~~sG~~aA~~i~ 318 (352)
.|...+.+++++..|++|++||+....+ +.+...+....+..+|..+|+.+.
T Consensus 255 ~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~ 310 (438)
T PRK13512 255 DKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIA 310 (438)
T ss_pred CCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhc
Confidence 3555666788889999999999985322 111111223334456777776664
No 206
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.04 E-value=7.5e-09 Score=103.73 Aligned_cols=156 Identities=12% Similarity=0.140 Sum_probs=104.5
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHHH
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMSK 187 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~~ 187 (352)
+++|||+|..|+..|..|++. |.+|+|+++..... ....+..+.+.+.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~l~-------------------------------~~d~~~~~~l~~~ 231 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNEL-GFDVTVAVRSIPLR-------------------------------GFDRQCSEKVVEY 231 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCcccc-------------------------------cCCHHHHHHHHHH
Confidence 799999999999999999999 99999998742110 0113344455555
Q ss_pred HHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCccccccc-
Q 039605 188 LLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDMN- 266 (352)
Q Consensus 188 ~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~~- 266 (352)
+. +.|++++.++.+.++...++.+ .+...+ ..++.+|.||+|+|..+.....++ ...++..+
T Consensus 232 l~-~~GV~i~~~~~v~~v~~~~~~~-~v~~~~--------------g~~i~~D~vl~a~G~~pn~~~l~l-~~~g~~~~~ 294 (499)
T PTZ00052 232 MK-EQGTLFLEGVVPINIEKMDDKI-KVLFSD--------------GTTELFDTVLYATGRKPDIKGLNL-NAIGVHVNK 294 (499)
T ss_pred HH-HcCCEEEcCCeEEEEEEcCCeE-EEEECC--------------CCEEEcCEEEEeeCCCCCccccCc-hhcCcEECC
Confidence 54 5699999999998887655443 244322 146899999999997654322111 11223332
Q ss_pred cccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHH
Q 039605 267 TAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 267 ~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
.+...+++. ++..|++|++||+.... +. .+..+..+|..+|+.++.
T Consensus 295 ~G~ii~~~~-~Ts~p~IyAiGDv~~~~---~~---l~~~A~~~g~~aa~ni~g 340 (499)
T PTZ00052 295 SNKIIAPND-CTNIPNIFAVGDVVEGR---PE---LTPVAIKAGILLARRLFK 340 (499)
T ss_pred CCCEeeCCC-cCCCCCEEEEEEecCCC---cc---cHHHHHHHHHHHHHHHhC
Confidence 344344455 88999999999987421 11 234557889999988863
No 207
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.03 E-value=4.1e-09 Score=102.92 Aligned_cols=38 Identities=37% Similarity=0.685 Sum_probs=33.2
Q ss_pred CCccEEEECCcHHHHHHHHHHhc-CCCC-cEEEEeccCCCC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISK-NPNV-QVAIIEQSVSPG 143 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~-~~G~-kV~viEk~~~~G 143 (352)
.++||+|||||+.|+++|++|++ . |. +|+||||....+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~-g~~~V~vle~~~~~~ 68 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEH-GITNVAVLEKGWLGG 68 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhc-CCCeEEEEEcccccC
Confidence 47899999999999999999998 6 74 899999986433
No 208
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.03 E-value=8e-09 Score=100.96 Aligned_cols=35 Identities=26% Similarity=0.589 Sum_probs=32.6
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSP 142 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~ 142 (352)
+||+|||||..|+++|++|++. |++|+||||+..+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-GYQVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCC
Confidence 4999999999999999999999 9999999998743
No 209
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.03 E-value=1e-08 Score=99.21 Aligned_cols=125 Identities=14% Similarity=0.027 Sum_probs=81.2
Q ss_pred HHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCC-CCC------
Q 039605 180 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHD-GPF------ 252 (352)
Q Consensus 180 ~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~-~~~------ 252 (352)
+.+.|.+.+. +.|++++.+++|.++..++++++++.+.++ ....++||.||+|+|.| +..
T Consensus 265 L~~aL~~~~~-~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g------------~~~~l~AD~vVLAaGaw~S~gL~a~l~ 331 (419)
T TIGR03378 265 LEEALKHRFE-QLGGVMLPGDRVLRAEFEGNRVTRIHTRNH------------RDIPLRADHFVLASGSFFSNGLVAEFD 331 (419)
T ss_pred HHHHHHHHHH-HCCCEEEECcEEEEEEeeCCeEEEEEecCC------------ccceEECCEEEEccCCCcCHHHHhhcC
Confidence 3355555555 669999999999999999998888776431 12479999999999999 621
Q ss_pred ----CCCCC----CCcccccc----------ccccceeecccc-----cccCceeEecchhhhhcCCCCCCcchhhhhhc
Q 039605 253 ----GATGV----RGMKALDM----------NTAEDAIVKLTR-----EIVPGMIVAGMEVAEIDGAPRMGPTFGAMMIS 309 (352)
Q Consensus 253 ----~~~g~----~g~~~~~~----------~~g~~~vv~~~~-----~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~s 309 (352)
+..++ +.....|. ......+++..+ ..++.+|++|-...+++. .++|-..|-++.+
T Consensus 332 ~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~-~~~gcG~GVai~T 410 (419)
T TIGR03378 332 KIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDP-IFEGCGSGVAVST 410 (419)
T ss_pred ceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCCh-HhcCCCchhHHHH
Confidence 01111 01111110 111112333333 358899999988877653 4666666767889
Q ss_pred hHHHHHHHH
Q 039605 310 GQKAAHLAL 318 (352)
Q Consensus 310 G~~aA~~i~ 318 (352)
|-.||+.|+
T Consensus 411 a~~aa~~i~ 419 (419)
T TIGR03378 411 ALHAAEQII 419 (419)
T ss_pred HHHHHHhhC
Confidence 999998874
No 210
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.02 E-value=5.2e-09 Score=102.36 Aligned_cols=57 Identities=26% Similarity=0.367 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCC
Q 039605 179 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 179 ~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
.+...|.+.+. +.|++++++++|+++..+++++.++.+.. .++.++.||+|+|.++.
T Consensus 202 ~~~~~l~~~~~-~~G~~i~~~~~V~~i~~~~~~~~~v~t~~---------------~~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 202 LFTQRLAAMAE-QLGVKFRFNTPVDGLLVEGGRITGVQTGG---------------GVITADAYVVALGSYST 258 (416)
T ss_pred HHHHHHHHHHH-HCCCEEEcCCEEEEEEecCCEEEEEEeCC---------------cEEeCCEEEECCCcchH
Confidence 44455665554 57999999999999988878777676532 37899999999998863
No 211
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.02 E-value=4.1e-09 Score=109.23 Aligned_cols=36 Identities=28% Similarity=0.524 Sum_probs=33.1
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSP 142 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~ 142 (352)
.+||+|||||++|+++|++|+++ |++|+|||+...+
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~-G~~V~VlE~~~~~ 295 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARR-GWQVTLYEADEAP 295 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHC-CCeEEEEecCCCc
Confidence 46999999999999999999999 9999999998543
No 212
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.02 E-value=6.6e-09 Score=99.95 Aligned_cols=168 Identities=18% Similarity=0.200 Sum_probs=114.2
Q ss_pred ccEEEECCcHHHHHHHHHHhcCC------------CCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEE
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNP------------NVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVI 174 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~------------G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~ 174 (352)
.+++|||||+.|...|-.|++.. .++|.|||+++.+.-
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp------------------------------ 205 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP------------------------------ 205 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc------------------------------
Confidence 57999999999999999998630 148999999875421
Q ss_pred echHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCC
Q 039605 175 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGA 254 (352)
Q Consensus 175 ~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~ 254 (352)
.....+... .++..++.||+++.++.|+++..+ ++.+.++ + .+|.++.+|-|+|...+...
T Consensus 206 ~~~~~l~~~-a~~~L~~~GV~v~l~~~Vt~v~~~-----~v~~~~g------------~-~~I~~~tvvWaaGv~a~~~~ 266 (405)
T COG1252 206 MFPPKLSKY-AERALEKLGVEVLLGTPVTEVTPD-----GVTLKDG------------E-EEIPADTVVWAAGVRASPLL 266 (405)
T ss_pred CCCHHHHHH-HHHHHHHCCCEEEcCCceEEECCC-----cEEEccC------------C-eeEecCEEEEcCCCcCChhh
Confidence 012233333 333344789999999999998754 4555432 1 26999999999997765433
Q ss_pred CCCCCcccccccc-ccceeecccc-cccCceeEecchhhhhcCCCCC-CcchhhhhhchHHHHHHHHHHcCCCCCCC
Q 039605 255 TGVRGMKALDMNT-AEDAIVKLTR-EIVPGMIVAGMEVAEIDGAPRM-GPTFGAMMISGQKAAHLALKSLGQPNAMD 328 (352)
Q Consensus 255 ~g~~g~~~~~~~~-g~~~vv~~~~-~~~pg~~~aG~~~~~~~g~~r~-g~~~~~~~~sG~~aA~~i~~~l~~~~~~~ 328 (352)
..+ .++..++ +...+..... ...|.+|++|||+...+. +. -++.-.|..+|..+|..|.++++++....
T Consensus 267 ~~l---~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~--~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~ 338 (405)
T COG1252 267 KDL---SGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP--RPVPPTAQAAHQQGEYAAKNIKARLKGKPLKP 338 (405)
T ss_pred hhc---ChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC--CCCCChhHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 211 2244454 5544434443 367999999999987654 32 23444667889999999999998854443
No 213
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=99.01 E-value=1.1e-09 Score=106.51 Aligned_cols=128 Identities=29% Similarity=0.432 Sum_probs=89.6
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC----------CCCCC-cceeec------chHHHHHHHcCCccccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV----------SPGGA-SGSVVR------KPAHLFLDELGIDYDEQ 168 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~----------~~GG~-~~~~~~------~~~~~~l~~~Gi~~~~~ 168 (352)
+|||+|||||-||+.||+.+++. |.+++|+-.+. .+||. -+..++ ...-+..+..++.|...
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARm-G~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~L 82 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARM-GAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRML 82 (621)
T ss_pred CCceEEECCCccchHHHHhhhcc-CCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhc
Confidence 58999999999999999999999 99999998653 23332 111111 11123445566666421
Q ss_pred ----CCeEE----EechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCC-EEEEEEEcccceeccCCCCCCCCCeEEEe
Q 039605 169 ----DNYVV----IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGN-RVGGIVTNWALVSMNHDSQSCMDPNVMEA 239 (352)
Q Consensus 169 ----~~~~~----~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g-~v~gv~~~~g~~~~~~~~~~~g~~~~i~A 239 (352)
+.-.. ..+...|...+.+.+...+|+.++.+ .|++|+.+++ +|.||.++.| ..|.|
T Consensus 83 N~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G--------------~~~~a 147 (621)
T COG0445 83 NSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADG--------------PEFHA 147 (621)
T ss_pred cCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCC--------------Ceeec
Confidence 11111 11223455677777778889999988 7899999777 6999999764 68999
Q ss_pred CEEEEccCCC
Q 039605 240 KVVVSSCGHD 249 (352)
Q Consensus 240 ~~VIlAtG~~ 249 (352)
+.||++||.+
T Consensus 148 ~aVVlTTGTF 157 (621)
T COG0445 148 KAVVLTTGTF 157 (621)
T ss_pred CEEEEeeccc
Confidence 9999999975
No 214
>PRK13748 putative mercuric reductase; Provisional
Probab=99.01 E-value=3.1e-09 Score=108.16 Aligned_cols=42 Identities=26% Similarity=0.495 Sum_probs=37.6
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcce
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGS 148 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~ 148 (352)
.+|||+||||||+|+.+|+.|++. |++|+|||++ .+||.+-.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~-G~~v~lie~~-~~GG~c~n 138 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ-GARVTLIERG-TIGGTCVN 138 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecC-cceeeccc
Confidence 479999999999999999999999 9999999997 77876433
No 215
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.01 E-value=4.7e-09 Score=100.60 Aligned_cols=168 Identities=21% Similarity=0.186 Sum_probs=108.0
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCc-EEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQ-VAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIM 185 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~k-V~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~ 185 (352)
-.|+|||+|..|+.+|..|.+. |.+ |+|+++...... + .. ..+.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~-g~~~Vtvi~~~~~~~~-------------------~-----------~~----~~~~ 217 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLL-GAEKVYLAYRRTINEA-------------------P-----------AG----KYEI 217 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeecchhhC-------------------C-----------CC----HHHH
Confidence 3799999999999999999988 987 999997642100 0 00 1123
Q ss_pred HHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCC--------CCCCCCCeEEEeCEEEEccCCCCCCCCCCC
Q 039605 186 SKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHD--------SQSCMDPNVMEAKVVVSSCGHDGPFGATGV 257 (352)
Q Consensus 186 ~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~--------~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~ 257 (352)
+++. ..|+++++++.+.++..+ +++..+...... .+.. ....++..++.+|.||+++|..+....
T Consensus 218 ~~l~-~~gi~i~~~~~v~~i~~~-~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l--- 290 (352)
T PRK12770 218 ERLI-ARGVEFLELVTPVRIIGE-GRVEGVELAKMR--LGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPF--- 290 (352)
T ss_pred HHHH-HcCCEEeeccCceeeecC-CcEeEEEEEEEE--ecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchh---
Confidence 3343 569999999999888654 455555442210 0000 000123468999999999997654322
Q ss_pred CCc-ccccccc-ccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCC
Q 039605 258 RGM-KALDMNT-AEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 323 (352)
Q Consensus 258 ~g~-~~~~~~~-g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~ 323 (352)
... .++..+. +...+.++.++..|++|++||+.... . ....++.+|..||..|.++|..
T Consensus 291 ~~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~~~~----~---~~~~A~~~g~~aa~~i~~~l~~ 351 (352)
T PRK12770 291 AKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGP----S---KIGKAIKSGLRAAQSIHEWLDL 351 (352)
T ss_pred hhcccCceecCCCcEeeCCCcccCCCCEEEEcccccCc----c---hHHHHHHHHHHHHHHHHHHHhc
Confidence 111 2222222 34444566777889999999997521 1 2456688999999999999854
No 216
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.00 E-value=1.8e-09 Score=107.09 Aligned_cols=40 Identities=40% Similarity=0.575 Sum_probs=36.1
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCc
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGAS 146 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~ 146 (352)
.+|||||||||++|+.+|+.|++. |++|+|||+ ...||.+
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~-g~~v~lie~-~~~GG~~ 41 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKL-GKKVALIEK-GPLGGTC 41 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC-CCeEEEEeC-Cccccce
Confidence 368999999999999999999999 999999999 5677764
No 217
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.99 E-value=1.8e-09 Score=107.26 Aligned_cols=39 Identities=33% Similarity=0.527 Sum_probs=35.9
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcc
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASG 147 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~ 147 (352)
|||+|||||++|+.+|++|++. |++|+|||+ +.+||.+.
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~-G~~v~lie~-~~~GG~~~ 40 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQL-GLKVALVEK-EYLGGTCL 40 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-CCeEEEEec-CCCCCcee
Confidence 7999999999999999999999 999999999 67788643
No 218
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.98 E-value=1.6e-09 Score=107.85 Aligned_cols=39 Identities=33% Similarity=0.537 Sum_probs=35.2
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCc
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGAS 146 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~ 146 (352)
+|||+||||||+|+.||+.|++. |++|+|||++ ..||++
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~-G~~V~lie~~-~~GG~c 42 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQL-GLKTAVVEKK-YWGGVC 42 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecC-CCCCce
Confidence 68999999999999999999999 9999999986 556653
No 219
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.97 E-value=2.1e-09 Score=107.14 Aligned_cols=130 Identities=22% Similarity=0.266 Sum_probs=73.9
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEec------cCCCCCCcceeecchHH-------------HHHHHcCCccc
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQ------SVSPGGASGSVVRKPAH-------------LFLDELGIDYD 166 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk------~~~~GG~~~~~~~~~~~-------------~~l~~~Gi~~~ 166 (352)
+||++|||+|++|++||+.|++. |++|+|||+ ....||++......|.+ +++..+|+++.
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~-g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~ 82 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQL-GLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD 82 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhC-CCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC
Confidence 68999999999999999999999 999999998 24567664332222221 11234565532
Q ss_pred cC-CCeEEEe-chHHHHH---HHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCE
Q 039605 167 EQ-DNYVVIK-HAALFTS---TIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKV 241 (352)
Q Consensus 167 ~~-~~~~~~~-~~~~~~~---~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~ 241 (352)
.. -++.... +...... ..++.+.+..+++++.+. +..+..+++.. .+.+.. . +..++++|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~~-~v~v~~-------~-----~~~~~~~d~ 148 (475)
T PRK06327 83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGR-GSFVGKTDAGY-EIKVTG-------E-----DETVITAKH 148 (475)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEecCCCCCC-EEEEec-------C-----CCeEEEeCE
Confidence 21 0110000 1111111 223344456789998774 33332221111 122211 0 124799999
Q ss_pred EEEccCCCC
Q 039605 242 VVSSCGHDG 250 (352)
Q Consensus 242 VIlAtG~~~ 250 (352)
||+|||...
T Consensus 149 lViATGs~p 157 (475)
T PRK06327 149 VIIATGSEP 157 (475)
T ss_pred EEEeCCCCC
Confidence 999999765
No 220
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.96 E-value=4.8e-09 Score=104.71 Aligned_cols=33 Identities=33% Similarity=0.609 Sum_probs=31.5
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEecc
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQS 139 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~ 139 (352)
+||+||||+|++|+.+|+.|++. |++|+|||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~-G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY-GAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence 68999999999999999999999 9999999974
No 221
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.96 E-value=1.8e-08 Score=103.53 Aligned_cols=168 Identities=12% Similarity=-0.010 Sum_probs=108.3
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-.|+|||+|..|+..|..+++. |.+|+|||+.+.+.. ....+....+.+
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~-G~eVTLIe~~~~ll~------------------------------~~d~eis~~l~~ 361 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTAL-GSEVVSFEYSPQLLP------------------------------LLDADVAKYFER 361 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhC-CCeEEEEeccCcccc------------------------------cCCHHHHHHHHH
Confidence 3799999999999999999999 999999999865421 011333344444
Q ss_pred HHHcCCCcEEEccceeEEEEEeCC-EEEEEEEcccceeccCCCCC-CC------CCeEEEeCEEEEccCCCCCCCCCCCC
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGN-RVGGIVTNWALVSMNHDSQS-CM------DPNVMEAKVVVSSCGHDGPFGATGVR 258 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g-~v~gv~~~~g~~~~~~~~~~-~g------~~~~i~A~~VIlAtG~~~~~~~~g~~ 258 (352)
.+.++.|++++.++.+.++..+++ ...-+.... ..++. ++ +..++.+|.||+|+|..+.....++.
T Consensus 362 ~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~------~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~ 435 (659)
T PTZ00153 362 VFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSE------RQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLD 435 (659)
T ss_pred HHhhcCCcEEEcCCEEEEEEecCCceEEEEEEec------cccccccccccccccceEEEcCEEEEEECcccCCccCCch
Confidence 444467999999999999976543 211222211 00000 00 12479999999999976543221111
Q ss_pred Cccccccccccceeecccccc------cCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHH
Q 039605 259 GMKALDMNTAEDAIVKLTREI------VPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 259 g~~~~~~~~g~~~vv~~~~~~------~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
..++..+.+.+.+.+++++. .|++|++||+... + +....+..+|..+|+.|..
T Consensus 436 -~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~----~---~La~~A~~qg~~aa~ni~g 494 (659)
T PTZ00153 436 -KLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGK----Q---MLAHTASHQALKVVDWIEG 494 (659)
T ss_pred -hcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCC----c---cCHHHHHHHHHHHHHHHcC
Confidence 11233445666666788775 6999999999632 1 2234456788888888864
No 222
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.96 E-value=4e-09 Score=96.36 Aligned_cols=132 Identities=23% Similarity=0.274 Sum_probs=90.5
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCccee--------------------------------------
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSV-------------------------------------- 149 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~-------------------------------------- 149 (352)
.|||||+|.|||+++..+... |-.|+++||....||++.-+
T Consensus 11 pvvVIGgGLAGLsasn~iin~-gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~ 89 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINK-GGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVP 89 (477)
T ss_pred cEEEECCchhhhhhHHHHHhc-CCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcH
Confidence 699999999999999999998 66699999999888871100
Q ss_pred --------ecchHHHHHHH-cCCccccC---CCe-EEE--------echHHHHHHHHHHHH----cCC-CcEEEccceeE
Q 039605 150 --------VRKPAHLFLDE-LGIDYDEQ---DNY-VVI--------KHAALFTSTIMSKLL----ARP-NVKLFNAVAAE 203 (352)
Q Consensus 150 --------~~~~~~~~l~~-~Gi~~~~~---~~~-~~~--------~~~~~~~~~L~~~~~----~~~-gv~i~~~t~v~ 203 (352)
-....++||+. +++..+.. +.. ... ....++...|..++. .++ -+++..+++|+
T Consensus 90 eLm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv 169 (477)
T KOG2404|consen 90 ELMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVV 169 (477)
T ss_pred HHHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceee
Confidence 00124577764 66654421 000 000 012244444444433 222 47899999999
Q ss_pred EEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 204 DLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 204 ~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
+|..++|+|.||+.-+ ..|+...+.++.||+|+|+++
T Consensus 170 ~il~n~gkVsgVeymd----------~sgek~~~~~~~VVlatGGf~ 206 (477)
T KOG2404|consen 170 DILRNNGKVSGVEYMD----------ASGEKSKIIGDAVVLATGGFG 206 (477)
T ss_pred eeecCCCeEEEEEEEc----------CCCCccceecCceEEecCCcC
Confidence 9999999999998743 123567899999999999986
No 223
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.96 E-value=6.2e-09 Score=103.86 Aligned_cols=43 Identities=33% Similarity=0.533 Sum_probs=36.4
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEecc--------CCCCCCcce
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQS--------VSPGGASGS 148 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~--------~~~GG~~~~ 148 (352)
+|||+|||+|++|+.||+.+++..|++|+|||+. ..+||+|-.
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln 53 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVN 53 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecC
Confidence 6899999999999999999999328999999984 457876443
No 224
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.96 E-value=7.6e-09 Score=96.54 Aligned_cols=61 Identities=25% Similarity=0.399 Sum_probs=43.7
Q ss_pred HHHHHHHHcCCCcEEEccceeEEEEEe--CCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 182 STIMSKLLARPNVKLFNAVAAEDLIVK--GNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 182 ~~L~~~~~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
..++..+.++.|++++.++.|.+|+.+ +++++||++.+. ++. .....+.++.||+|.|...
T Consensus 196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~-------~~~-~~~~~~~ak~VIlaAGai~ 258 (296)
T PF00732_consen 196 TTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDN-------DGG-VQRRIVAAKEVILAAGAIG 258 (296)
T ss_dssp HHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEET-------TTS-EEEEEEEEEEEEE-SHHHH
T ss_pred hcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeec-------CCc-ceeeeccceeEEeccCCCC
Confidence 334455556779999999999999886 679999998652 110 0135788899999999743
No 225
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.96 E-value=1.5e-08 Score=99.16 Aligned_cols=125 Identities=19% Similarity=0.301 Sum_probs=82.4
Q ss_pred cEEEECCcHHHHHHHHHHhcCCC-CcEEEEeccCCCCC-CcceeecchHHHHHHHcCCc--cc-----------------
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPN-VQVAIIEQSVSPGG-ASGSVVRKPAHLFLDELGID--YD----------------- 166 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G-~kV~viEk~~~~GG-~~~~~~~~~~~~~l~~~Gi~--~~----------------- 166 (352)
+|+|||||++||++|+.|+++ | .+|+|+||.+..+. +....+.....+.|+.+|+. +.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~-g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH-SHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence 599999999999999999998 7 69999999876542 23334455566666666652 00
Q ss_pred -c-C-CCeEE----------EechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCC
Q 039605 167 -E-Q-DNYVV----------IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMD 233 (352)
Q Consensus 167 -~-~-~~~~~----------~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~ 233 (352)
. . ..+.. ..+..++.+.|.+.+ ++..++++++++++..+++.+ .+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~---~~~~v~~~~~v~~i~~~~~~~-~v~~~~-------------- 142 (414)
T TIGR03219 81 RNGSDASYLGATIAPGVGQSSVHRADFLDALLKHL---PEGIASFGKRATQIEEQAEEV-QVLFTD-------------- 142 (414)
T ss_pred EecCccceeeeeccccCCcccCCHHHHHHHHHHhC---CCceEEcCCEEEEEEecCCcE-EEEEcC--------------
Confidence 0 0 00000 112334555555443 245688899999998776654 344432
Q ss_pred CeEEEeCEEEEccCCCCC
Q 039605 234 PNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 234 ~~~i~A~~VIlAtG~~~~ 251 (352)
..++.+|.||.|+|.++.
T Consensus 143 g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 143 GTEYRCDLLIGADGIKSA 160 (414)
T ss_pred CCEEEeeEEEECCCccHH
Confidence 247999999999998873
No 226
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.96 E-value=8.9e-09 Score=103.65 Aligned_cols=114 Identities=18% Similarity=0.314 Sum_probs=77.1
Q ss_pred CCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHH
Q 039605 104 HADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTST 183 (352)
Q Consensus 104 ~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~ 183 (352)
...|||+||||||+|++||+.|++. |++|+|||. ..||....... +..-.+.+. ....++...
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~-G~~v~li~~--~~GG~~~~~~~-----~~~~~~~~~---------~~~~~l~~~ 272 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARK-GLRTAMVAE--RIGGQVKDTVG-----IENLISVPY---------TTGSQLAAN 272 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEec--CCCCccccCcC-----cccccccCC---------CCHHHHHHH
Confidence 4579999999999999999999999 999999985 46664211100 000001110 123455566
Q ss_pred HHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 184 IMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 184 L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
+.+.+. +.|++++.+++|.++..+++.+ .+.+.+ ...+.+|.+|+|||...
T Consensus 273 l~~~l~-~~gv~i~~~~~V~~I~~~~~~~-~v~~~~--------------g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 273 LEEHIK-QYPIDLMENQRAKKIETEDGLI-VVTLES--------------GEVLKAKSVIVATGARW 323 (515)
T ss_pred HHHHHH-HhCCeEEcCCEEEEEEecCCeE-EEEECC--------------CCEEEeCEEEECCCCCc
Confidence 666665 4699999999999987765433 333322 24799999999999764
No 227
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.96 E-value=6.6e-10 Score=107.52 Aligned_cols=139 Identities=21% Similarity=0.320 Sum_probs=89.5
Q ss_pred cCCCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeec------------------------------
Q 039605 102 ITHADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVR------------------------------ 151 (352)
Q Consensus 102 ~~~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~------------------------------ 151 (352)
....+|||+|||||..|..||+.++-+ |+||.++|++++..|++.....
T Consensus 63 ~~~~~fDVLIIGGGAtGaGcALDA~TR-GLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~lD~~qyrlV~eaL~E 141 (680)
T KOG0042|consen 63 KSTHEFDVLIIGGGATGAGCALDAATR-GLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEALNE 141 (680)
T ss_pred hcCCcccEEEECCCccCcceeehhhcc-cceeEEEecccccCCccccchhhhcccHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344679999999999999999999999 9999999999988777322110
Q ss_pred ------------------chHHHHHHH----cCCcc-ccC-------CCeEE-----------------------E--ec
Q 039605 152 ------------------KPAHLFLDE----LGIDY-DEQ-------DNYVV-----------------------I--KH 176 (352)
Q Consensus 152 ------------------~~~~~~l~~----~Gi~~-~~~-------~~~~~-----------------------~--~~ 176 (352)
.|...|++- .|+.+ ++. ..+++ . .+
T Consensus 142 R~~lle~APhLs~~lPImlPvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~~~L~Ga~VYyDGQ~ 221 (680)
T KOG0042|consen 142 RANLLEIAPHLSQPLPIMLPVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRKDNLKGAMVYYDGQH 221 (680)
T ss_pred HHHHhhcCccccCCcceeeehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCccccccCceeEEEEecCCC
Confidence 011222211 01110 000 00000 0 01
Q ss_pred hHHHHHHHHHHHHcCCCcEEEccceeEEEEEeC-CEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 177 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-NRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 177 ~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~-g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
.+...+..+.--..+.|..+.+..+|.+|+.++ +++.|+.+.+. .+|++.+|+|+.||.|||.++
T Consensus 222 nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~---------iTG~e~~I~Ak~VVNATGpfs 287 (680)
T KOG0042|consen 222 NDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDH---------ITGKEYEIRAKVVVNATGPFS 287 (680)
T ss_pred chHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEe---------ecCcEEEEEEEEEEeCCCCcc
Confidence 111112222222336799999999999999985 56889888652 334678999999999999765
No 228
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=98.95 E-value=3.4e-09 Score=106.40 Aligned_cols=199 Identities=16% Similarity=0.162 Sum_probs=136.8
Q ss_pred ccccccccCCCCCCCcc-ccccCcccchhhhHHHHHhHhhcccCCCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEecc
Q 039605 61 MSISASASASSPPSDLD-AFKFDAIKESIVSRETTRRYMTDMITHADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQS 139 (352)
Q Consensus 61 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~ 139 (352)
+.-+.|+.++.+|.++. .|.++.+++...-... ... .-.-+|||||.-|+.+|..|.+. |..|.|++-.
T Consensus 108 ATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~--------ar~-~~~avVIGGGLLGlEaA~~L~~~-Gm~~~Vvh~~ 177 (793)
T COG1251 108 ATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDC--------ARN-KKKAVVIGGGLLGLEAARGLKDL-GMEVTVVHIA 177 (793)
T ss_pred ecCccccccCCCCCCCCCeeEEecHHHHHHHHHH--------Hhc-cCCcEEEccchhhhHHHHHHHhC-CCceEEEeec
Confidence 34566888889998875 8888777654432211 111 22379999999999999999999 9999999976
Q ss_pred CCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcc
Q 039605 140 VSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNW 219 (352)
Q Consensus 140 ~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~ 219 (352)
+.+ ..+.| ......++++...+.|++++.+...+++.. ++++.++...+
T Consensus 178 ~~l-----------MerQL-------------------D~~ag~lL~~~le~~Gi~~~l~~~t~ei~g-~~~~~~vr~~D 226 (793)
T COG1251 178 PTL-----------MERQL-------------------DRTAGRLLRRKLEDLGIKVLLEKNTEEIVG-EDKVEGVRFAD 226 (793)
T ss_pred chH-----------HHHhh-------------------hhHHHHHHHHHHHhhcceeecccchhhhhc-CcceeeEeecC
Confidence 532 01111 112233444445578999999987777776 67788888865
Q ss_pred cceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCccccccccccceeecccccccCceeEecchhhhhcCCCCC
Q 039605 220 ALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDMNTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRM 299 (352)
Q Consensus 220 g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~ 299 (352)
| ..+.|+.||.|+|..+.. +.....++..++|. .+.++++++.|.+|+.|.++.+.. . -.
T Consensus 227 G--------------~~i~ad~VV~a~GIrPn~---ela~~aGlavnrGI-vvnd~mqTsdpdIYAvGEcae~~g-~-~y 286 (793)
T COG1251 227 G--------------TEIPADLVVMAVGIRPND---ELAKEAGLAVNRGI-VVNDYMQTSDPDIYAVGECAEHRG-K-VY 286 (793)
T ss_pred C--------------CcccceeEEEeccccccc---HhHHhcCcCcCCCe-eecccccccCCCeeehhhHHHhcC-c-cc
Confidence 3 689999999999965443 22334445566644 667999999999999999997642 1 12
Q ss_pred CcchhhhhhchHHHHHHHHHHc
Q 039605 300 GPTFGAMMISGQKAAHLALKSL 321 (352)
Q Consensus 300 g~~~~~~~~sG~~aA~~i~~~l 321 (352)
|-.+.. +.+++.+|..+....
T Consensus 287 GLVaP~-yeq~~v~a~hl~~~~ 307 (793)
T COG1251 287 GLVAPL-YEQAKVLADHLCGGE 307 (793)
T ss_pred eehhHH-HHHHHHHHHHhccCc
Confidence 333433 677888887776543
No 229
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.95 E-value=9.9e-09 Score=101.57 Aligned_cols=65 Identities=12% Similarity=0.179 Sum_probs=45.5
Q ss_pred EEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEe-CCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 172 VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 172 ~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
.+......+.+.|.+.+. +.|++++.++ |+++..+ ++.+.+|.+.+ ..+++||.||+|+|..+
T Consensus 148 ayhlDR~~fd~~L~~~A~-~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~--------------g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 148 AYHLDRAKFDQFLRRHAE-ERGVEVIEGT-VVDVELDEDGRITAVRLDD--------------GRTIEADFFIDASGRRS 211 (454)
T ss_dssp EEEEEHHHHHHHHHHHHH-HTT-EEEET--EEEEEE-TTSEEEEEEETT--------------SEEEEESEEEE-SGGG-
T ss_pred eEEEeHHHHHHHHHHHHh-cCCCEEEeCE-EEEEEEcCCCCEEEEEECC--------------CCEEEEeEEEECCCccc
Confidence 334456678788888877 4599999985 6776665 56788888854 36899999999999866
Q ss_pred CC
Q 039605 251 PF 252 (352)
Q Consensus 251 ~~ 252 (352)
..
T Consensus 212 ~L 213 (454)
T PF04820_consen 212 LL 213 (454)
T ss_dssp CC
T ss_pred hh
Confidence 54
No 230
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.95 E-value=1.5e-08 Score=98.06 Aligned_cols=126 Identities=21% Similarity=0.213 Sum_probs=79.6
Q ss_pred cEEEECCcHHHHHHHHHH--hcCCCCcEEEEeccCCCCCCcceeecchH-----HHHHHHcCC---c--cccC----CC-
Q 039605 108 DVVVVGAGSAGLSCAYEI--SKNPNVQVAIIEQSVSPGGASGSVVRKPA-----HLFLDELGI---D--YDEQ----DN- 170 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~l--a~~~G~kV~viEk~~~~GG~~~~~~~~~~-----~~~l~~~Gi---~--~~~~----~~- 170 (352)
||||||||+||+++|++| ++. |++|+|||+....+-.....+..+. .+.+-...+ . +... ..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~ 79 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDY 79 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEccc
Confidence 899999999999999999 777 9999999998766221111111110 111111111 1 1111 11
Q ss_pred eEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 171 YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 171 ~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
-+......++.+.+.+++. ..+ .++.+..|.++..+++.+ .+.+.+ ..+++|+.||.|+|..+
T Consensus 80 ~Y~~i~~~~f~~~l~~~~~-~~~-~~~~~~~V~~i~~~~~~~-~v~~~~--------------g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 80 PYCMIDRADFYEFLLERAA-AGG-VIRLNARVTSIEETGDGV-LVVLAD--------------GRTIRARVVVDARGPSS 142 (374)
T ss_pred ceEEEEHHHHHHHHHHHhh-hCC-eEEEccEEEEEEecCceE-EEEECC--------------CCEEEeeEEEECCCccc
Confidence 1224456778888888887 555 456667899988876633 344433 25899999999999654
Q ss_pred C
Q 039605 251 P 251 (352)
Q Consensus 251 ~ 251 (352)
.
T Consensus 143 ~ 143 (374)
T PF05834_consen 143 P 143 (374)
T ss_pred c
Confidence 3
No 231
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.93 E-value=1.3e-08 Score=101.51 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcC---CC--cEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCC
Q 039605 178 ALFTSTIMSKLLAR---PN--VKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 178 ~~~~~~L~~~~~~~---~g--v~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
..+...+.+.+.+. .| ++++++++|+++..+++..+.|.+.. .+++|+.||+|+|+|+.
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~---------------G~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNR---------------GEIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECC---------------CEEEeCEEEECcChhHH
Confidence 45567777776531 45 88999999999998766666666632 37999999999999873
No 232
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.93 E-value=1.3e-08 Score=98.66 Aligned_cols=168 Identities=20% Similarity=0.146 Sum_probs=116.8
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHH
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIM 185 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~ 185 (352)
..+++|||+|+.|+.+|..|+++ |++|+++|+.+.+++... . .++...+.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~-G~~v~l~e~~~~~~~~~~----------------------------~-~~~~~~~~ 185 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKR-GKKVTLIEAADRLGGQLL----------------------------D-PEVAEELA 185 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHc-CCeEEEEEcccccchhhh----------------------------h-HHHHHHHH
Confidence 35899999999999999999999 999999999987764100 0 33444444
Q ss_pred HHHHcCCCcEEEccceeEEEEEeCCEEEE--EEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcccc
Q 039605 186 SKLLARPNVKLFNAVAAEDLIVKGNRVGG--IVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKAL 263 (352)
Q Consensus 186 ~~~~~~~gv~i~~~t~v~~l~~~~g~v~g--v~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~ 263 (352)
+.+. ..|+++++++.+.++..+.+.... +...+ ...+++|.+++++|..++.......+. ..
T Consensus 186 ~~l~-~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~--------------~~~~~~d~~~~~~g~~p~~~l~~~~~~-~~ 249 (415)
T COG0446 186 ELLE-KYGVELLLGTKVVGVEGKGNTLVVERVVGID--------------GEEIKADLVIIGPGERPNVVLANDALP-GL 249 (415)
T ss_pred HHHH-HCCcEEEeCCceEEEEcccCcceeeEEEEeC--------------CcEEEeeEEEEeecccccHHHHhhCcc-ce
Confidence 4444 668999999999999887665433 23322 368999999999997764322111110 12
Q ss_pred ccccccceeecccccc-cCceeEecchhhhhcCC---CCCCcchhhhhhchHHHHHHHHH
Q 039605 264 DMNTAEDAIVKLTREI-VPGMIVAGMEVAEIDGA---PRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 264 ~~~~g~~~vv~~~~~~-~pg~~~aG~~~~~~~g~---~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
....+...+.+.+.+. .+.+|++||+....... ....+.+..+...+..+++.+..
T Consensus 250 ~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~ 309 (415)
T COG0446 250 ALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAG 309 (415)
T ss_pred eccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhcc
Confidence 2344555667778886 99999999988654322 22345666777788888888774
No 233
>PRK14727 putative mercuric reductase; Provisional
Probab=98.93 E-value=6.7e-09 Score=103.65 Aligned_cols=43 Identities=28% Similarity=0.464 Sum_probs=38.7
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcce
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGS 148 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~ 148 (352)
.+|||+|||+|++|+.+|+.|++. |++|+|||+...+||.|-.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~-g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEH-GARVTIIEGADVIGGCCVN 57 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEEccCcceeEecc
Confidence 478999999999999999999999 9999999998778887543
No 234
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.93 E-value=2.9e-08 Score=101.48 Aligned_cols=128 Identities=20% Similarity=0.258 Sum_probs=82.2
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCC--CC-CC--cceeecchHHHHHHHcCCcc--------------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVS--PG-GA--SGSVVRKPAHLFLDELGIDY-------------- 165 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~--~G-G~--~~~~~~~~~~~~l~~~Gi~~-------------- 165 (352)
...+|+|||||++|+++|+.|++. |++|+|+||.+. .+ |. ....+.....+.|+.+|+..
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~ 158 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDR 158 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccce
Confidence 467999999999999999999999 999999999752 11 11 12334444555555554210
Q ss_pred -----cc-CC-----------------CeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccce
Q 039605 166 -----DE-QD-----------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALV 222 (352)
Q Consensus 166 -----~~-~~-----------------~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~ 222 (352)
+. .+ .+....+..++.+.|.+.+. ...++++++|+++..+++.+. +.+.+
T Consensus 159 i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg---~~~i~~g~~V~~I~~~~d~Vt-V~~~d--- 231 (668)
T PLN02927 159 INGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVG---EDVIRNESNVVDFEDSGDKVT-VVLEN--- 231 (668)
T ss_pred eeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCC---CCEEEcCCEEEEEEEeCCEEE-EEECC---
Confidence 00 00 00112334445555544332 123678889999988777765 55433
Q ss_pred eccCCCCCCCCCeEEEeCEEEEccCCCCC
Q 039605 223 SMNHDSQSCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 223 ~~~~~~~~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
..++.+|.||.|+|.++.
T Consensus 232 -----------G~ti~aDlVVGADG~~S~ 249 (668)
T PLN02927 232 -----------GQRYEGDLLVGADGIWSK 249 (668)
T ss_pred -----------CCEEEcCEEEECCCCCcH
Confidence 257899999999999873
No 235
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.92 E-value=1.7e-08 Score=108.76 Aligned_cols=125 Identities=28% Similarity=0.306 Sum_probs=77.7
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHH
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTI 184 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L 184 (352)
.++||+|||||||||+||+.|++. |++|+|||+++.+||...... ..+ + .....++...+
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~-G~~V~liD~~~~~GG~~~~~~----------~~~--~-------g~~~~~~~~~~ 221 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARA-GARVILVDEQPEAGGSLLSEA----------ETI--D-------GKPAADWAAAT 221 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCCCCeeeccc----------ccc--C-------CccHHHHHHHH
Confidence 468999999999999999999999 999999999988887421100 000 0 01223454556
Q ss_pred HHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 185 MSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 185 ~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
.+++....+++++.++.|..+.. ++.+..+......+.............++.++.||+|||...
T Consensus 222 ~~~l~~~~~v~v~~~t~V~~i~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~ 286 (985)
T TIGR01372 222 VAELTAMPEVTLLPRTTAFGYYD-HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHE 286 (985)
T ss_pred HHHHhcCCCcEEEcCCEEEEEec-CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCC
Confidence 67776555799999998887743 233322211100000000000000123799999999999864
No 236
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.92 E-value=3.3e-08 Score=98.58 Aligned_cols=62 Identities=8% Similarity=0.144 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEccceeEEEEEeCC-EEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 178 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGN-RVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 178 ~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g-~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
..+...|.+.+. +.|++++++++|+++..+++ .+. +.+.+ ..+ ++..+++|++||+|+|.++
T Consensus 178 ~~l~~aL~~~a~-~~Gv~i~~~t~V~~i~~~~~~~v~-v~~~~------~~~---g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 178 GALTKQLLGYLV-QNGTTIRFGHEVRNLKRQSDGSWT-VTVKN------TRT---GGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCCeEE-EEEee------ccC---CceEEEECCEEEECCCcch
Confidence 456677777776 46999999999999988643 332 33211 011 1234799999999999987
No 237
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.92 E-value=4.1e-09 Score=101.01 Aligned_cols=40 Identities=33% Similarity=0.604 Sum_probs=37.3
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
..-+++|||||++|+.||+.|++. |++|.|+||.+.+||.
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~-G~~v~LVEKepsiGGr 162 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADM-GFKVYLVEKEPSIGGR 162 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHc-CCeEEEEecCCccccc
Confidence 345899999999999999999999 9999999999999986
No 238
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.90 E-value=2.6e-08 Score=99.82 Aligned_cols=38 Identities=32% Similarity=0.658 Sum_probs=36.3
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
|||||||+|.+||++|..|+++ |++|+|+||+..+||.
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~-G~~V~vlE~~~~~GG~ 38 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVK-GAKVLVLERYLIPGGS 38 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHC-CCcEEEEECCCCCCCc
Confidence 5999999999999999999999 9999999999998876
No 239
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.90 E-value=4.3e-08 Score=97.91 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=32.8
Q ss_pred CCccEEEECCcHHHHHHHHHHhcC-CCCcEEEEeccCC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKN-PNVQVAIIEQSVS 141 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~-~G~kV~viEk~~~ 141 (352)
.++||+|||||+.|+++|++|++. +|.+|+||||...
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~ 41 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG 41 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 368999999999999999999984 4899999999764
No 240
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.90 E-value=2.7e-08 Score=95.66 Aligned_cols=164 Identities=16% Similarity=0.103 Sum_probs=115.8
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHH
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIM 185 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~ 185 (352)
.--|+++|+|..|+.+|..|... +++|++|++.+.+- .+ .......+. +
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~-~~~VT~V~~e~~~~-----------~~------------------lf~~~i~~~-~ 261 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSK-AKSVTVVFPEPWLL-----------PR------------------LFGPSIGQF-Y 261 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhc-CceEEEEccCccch-----------hh------------------hhhHHHHHH-H
Confidence 34699999999999999999999 99999999876330 00 011223333 3
Q ss_pred HHHHcCCCcEEEccceeEEEEEeC-CEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCccccc
Q 039605 186 SKLLARPNVKLFNAVAAEDLIVKG-NRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALD 264 (352)
Q Consensus 186 ~~~~~~~gv~i~~~t~v~~l~~~~-g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~ 264 (352)
+.+.++.|++++.++.+..+..+. |++.-|.+.++ .++.||.||+.+|..+..... ......
T Consensus 262 ~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg--------------~~l~adlvv~GiG~~p~t~~~---~~g~~~ 324 (478)
T KOG1336|consen 262 EDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDG--------------KTLEADLVVVGIGIKPNTSFL---EKGILL 324 (478)
T ss_pred HHHHHhcCeEEEEecceeecccCCCCcEEEEEeccC--------------CEeccCeEEEeeccccccccc---ccccee
Confidence 334447899999999999999874 78888877543 689999999999976544332 212233
Q ss_pred cccccceeecccccccCceeEecchhhhhc---CCCCCCcchhhhhhchHHHHHHH
Q 039605 265 MNTAEDAIVKLTREIVPGMIVAGMEVAEID---GAPRMGPTFGAMMISGQKAAHLA 317 (352)
Q Consensus 265 ~~~g~~~vv~~~~~~~pg~~~aG~~~~~~~---g~~r~g~~~~~~~~sG~~aA~~i 317 (352)
...|.+.+.++.++.+|++|+.||+++... +..+.+.-+..+..+|..|-.+|
T Consensus 325 ~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai 380 (478)
T KOG1336|consen 325 DSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAI 380 (478)
T ss_pred cccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhh
Confidence 445777778899999999999999987632 22222455555666777654444
No 241
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.90 E-value=4.6e-09 Score=104.38 Aligned_cols=38 Identities=29% Similarity=0.570 Sum_probs=34.8
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCc
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGAS 146 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~ 146 (352)
|||+||||||+|+.||+.|++. |++|+||||.. .||++
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~-g~~v~lie~~~-~GG~c 38 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL-GASVAMVERGP-LGGTC 38 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCc-ccCCe
Confidence 6999999999999999999999 99999999976 66664
No 242
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.90 E-value=7.8e-09 Score=103.61 Aligned_cols=33 Identities=33% Similarity=0.543 Sum_probs=31.4
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEecc
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQS 139 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~ 139 (352)
+|||+||||||+|+.||+.|+++ |++|+|||+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~-G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAH-GKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC-CCeEEEEecc
Confidence 58999999999999999999999 9999999973
No 243
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.86 E-value=2.3e-08 Score=96.59 Aligned_cols=38 Identities=34% Similarity=0.653 Sum_probs=34.6
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPG 143 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~G 143 (352)
.++||+|||||++|+++|++|+++ |.+|+|||+....+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~-G~~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHc-CCEEEEEecCccCC
Confidence 367999999999999999999999 99999999987654
No 244
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.85 E-value=9.4e-09 Score=105.52 Aligned_cols=44 Identities=27% Similarity=0.422 Sum_probs=37.8
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEecc-CCCCCCccee
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQS-VSPGGASGSV 149 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~-~~~GG~~~~~ 149 (352)
.+|||+|||+|++|+.+|+.+++. |+||+|||+. ..+||+|-..
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~-G~kV~lie~~~~~lGGtCvn~ 159 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMER-GLKVIIFTGDDDSIGGTCVNV 159 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCccccceeEe
Confidence 479999999999999999999999 9999999975 3578774443
No 245
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.85 E-value=6.2e-08 Score=93.14 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=103.0
Q ss_pred ccEEEECCcHHHHHHHHHHhc----CCC--CcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISK----NPN--VQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALF 180 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~----~~G--~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~ 180 (352)
-.|+|||+|++|+.+|..|++ . | .+|+|+. .+.... ......
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~-g~~~~V~li~-~~~~l~------------------------------~~~~~~ 193 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKR-GLRGQVTLIA-GASLLP------------------------------GFPAKV 193 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhc-CCCceEEEEe-CCcccc------------------------------cCCHHH
Confidence 379999999999999999985 3 4 4799983 321100 001223
Q ss_pred HHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCc
Q 039605 181 TSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGM 260 (352)
Q Consensus 181 ~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~ 260 (352)
...+.+.+. +.|++++.++.+.++. ++ .+.+.+ ..++.+|.||+|+|..++.... .
T Consensus 194 ~~~~~~~l~-~~gV~v~~~~~v~~i~--~~---~v~~~~--------------g~~i~~D~vi~a~G~~p~~~l~----~ 249 (364)
T TIGR03169 194 RRLVLRLLA-RRGIEVHEGAPVTRGP--DG---ALILAD--------------GRTLPADAILWATGARAPPWLA----E 249 (364)
T ss_pred HHHHHHHHH-HCCCEEEeCCeeEEEc--CC---eEEeCC--------------CCEEecCEEEEccCCChhhHHH----H
Confidence 333344444 6799999999888774 22 244432 2579999999999966432111 1
Q ss_pred ccccc-ccccceeeccccc-ccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCCCC
Q 039605 261 KALDM-NTAEDAIVKLTRE-IVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPN 325 (352)
Q Consensus 261 ~~~~~-~~g~~~vv~~~~~-~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~~~ 325 (352)
.++.. ..+...+.++.++ ..|++|++||+....+. +. ......|..+|+.+|..|...|.++.
T Consensus 250 ~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~-~~-~~~~~~A~~~g~~~a~ni~~~l~g~~ 314 (364)
T TIGR03169 250 SGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDA-PR-PKAGVYAVRQAPILAANLRASLRGQP 314 (364)
T ss_pred cCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCC-CC-CCchHHHHHhHHHHHHHHHHHhcCCC
Confidence 11222 2355555566666 78999999999864321 11 11223457899999999999987654
No 246
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.85 E-value=5.3e-08 Score=97.79 Aligned_cols=36 Identities=39% Similarity=0.702 Sum_probs=34.5
Q ss_pred EEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 109 VVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 109 VvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
|||||||.+||+||..|++. |++|+|+|++..+||.
T Consensus 1 vvVIGaG~~GL~aA~~La~~-G~~V~VlE~~~~~GG~ 36 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAA-GIPVTVVEQRDKPGGR 36 (502)
T ss_pred CEEECcCHHHHHHHHHHHhC-CCcEEEEECCCCCcCc
Confidence 68999999999999999999 9999999999999887
No 247
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.85 E-value=7.7e-09 Score=103.94 Aligned_cols=133 Identities=16% Similarity=0.130 Sum_probs=78.6
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecc-----h---------HHHHHHHcCCccccCCCeEE
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRK-----P---------AHLFLDELGIDYDEQDNYVV 173 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~-----~---------~~~~l~~~Gi~~~~~~~~~~ 173 (352)
.|+|||||++||++|..|.+. |++++++||.+.+||.|...-.. . ..+.+.--..++. +++..
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~-g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p--~~~p~ 79 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEE-GLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFP--EDYPD 79 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-T-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HC--CCCSS
T ss_pred EEEEECccHHHHHHHHHHHHC-CCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCC--CCCCC
Confidence 599999999999999999999 99999999999999986432100 0 0000000112222 12222
Q ss_pred EechHHHHHHHHHHHHcCCCc--EEEccceeEEEEEeCC----EEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccC
Q 039605 174 IKHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKGN----RVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCG 247 (352)
Q Consensus 174 ~~~~~~~~~~L~~~~~~~~gv--~i~~~t~v~~l~~~~g----~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG 247 (352)
..+..++.+.|...+. +-++ .+.++++|+++...++ .-+-|.+.. +++..+-..|.||+|+|
T Consensus 80 f~~~~~v~~Yl~~Ya~-~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~-----------~g~~~~~~fD~VvvatG 147 (531)
T PF00743_consen 80 FPSHSEVLEYLESYAE-HFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEN-----------DGKEETEEFDAVVVATG 147 (531)
T ss_dssp SEBHHHHHHHHHHHHH-HTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETT-----------TTEEEEEEECEEEEEE-
T ss_pred CCCHHHHHHHHHHHHh-hhCCcceEEEccEEeEeeeccccCCCceEEEEeec-----------CCeEEEEEeCeEEEcCC
Confidence 2345556555544443 3444 5889999999988642 122343321 12334566899999999
Q ss_pred CCCCCCCC
Q 039605 248 HDGPFGAT 255 (352)
Q Consensus 248 ~~~~~~~~ 255 (352)
.++.+..|
T Consensus 148 ~~~~P~~P 155 (531)
T PF00743_consen 148 HFSKPNIP 155 (531)
T ss_dssp SSSCESB-
T ss_pred CcCCCCCC
Confidence 98755544
No 248
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.84 E-value=5.7e-08 Score=95.15 Aligned_cols=138 Identities=15% Similarity=0.098 Sum_probs=86.7
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecch----H-H---------HHHHHcCCccccCCCe
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKP----A-H---------LFLDELGIDYDEQDNY 171 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~----~-~---------~~l~~~Gi~~~~~~~~ 171 (352)
.-+|+|||||++||++|+.|.+. |++|+|+||.+.+||.|...-... + . +.+.-..++|... +
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~-g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~--~ 82 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE-GHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPER--D 82 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC-CCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCccc--C
Confidence 45899999999999999999999 999999999999999865541111 1 1 1121123333322 1
Q ss_pred EEE-echHHHHHHHHHHHHcCCCc--EEEccceeEEEEEeC-CEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccC
Q 039605 172 VVI-KHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKG-NRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCG 247 (352)
Q Consensus 172 ~~~-~~~~~~~~~L~~~~~~~~gv--~i~~~t~v~~l~~~~-g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG 247 (352)
... ....++.+.|.+.+. +.++ .+.+++++..+...+ |+. .|...+. .+ ...+..+|.|++|||
T Consensus 83 ~~~~p~~~e~~~YL~~yA~-~F~l~~~i~f~~~v~~v~~~~~gkW-~V~~~~~-------~~---~~~~~ifd~VvVctG 150 (448)
T KOG1399|consen 83 PRYFPSHREVLEYLRDYAK-HFDLLKMINFNTEVVRVDSIDKGKW-RVTTKDN-------GT---QIEEEIFDAVVVCTG 150 (448)
T ss_pred cccCCCHHHHHHHHHHHHH-hcChhhheEecccEEEEeeccCCce-eEEEecC-------Cc---ceeEEEeeEEEEccc
Confidence 222 223355555544443 5554 577888888887766 444 3444321 00 125788999999999
Q ss_pred CCCCCCCCCCC
Q 039605 248 HDGPFGATGVR 258 (352)
Q Consensus 248 ~~~~~~~~g~~ 258 (352)
++..+..|.++
T Consensus 151 h~~~P~~P~~~ 161 (448)
T KOG1399|consen 151 HYVEPRIPQIP 161 (448)
T ss_pred CcCCCCCCcCC
Confidence 98424443333
No 249
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.84 E-value=7.5e-08 Score=99.79 Aligned_cols=62 Identities=23% Similarity=0.374 Sum_probs=48.1
Q ss_pred cccchhhhHHHHHhHhhc--cc-----CCCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 83 AIKESIVSRETTRRYMTD--MI-----THADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~--~~-----~~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
|+.-..+.+++++..+++ |. ...-..|.|||+||+||+||-+|-+. |..|+|.||.+.+||-
T Consensus 1755 pv~iksie~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~-gh~v~vyer~dr~ggl 1823 (2142)
T KOG0399|consen 1755 PVGIKSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKA-GHTVTVYERSDRVGGL 1823 (2142)
T ss_pred CccccchhhHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhc-CcEEEEEEecCCcCce
Confidence 343335667777776654 11 11346899999999999999999999 9999999999999875
No 250
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.84 E-value=2.7e-08 Score=98.77 Aligned_cols=36 Identities=33% Similarity=0.614 Sum_probs=32.8
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
+|+|||+|++|+.||..|++. |++|+||||+. .||.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-g~~V~lie~~~-~GG~ 37 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-GKNVTLIDEAD-LGGT 37 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEECCc-cccc
Confidence 699999999999999999999 99999999975 5554
No 251
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.83 E-value=7.2e-09 Score=101.84 Aligned_cols=123 Identities=17% Similarity=0.166 Sum_probs=76.4
Q ss_pred CCCcEEEccceeEEEEEe-CCEEEEEEEccccee-------ccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCccc
Q 039605 191 RPNVKLFNAVAAEDLIVK-GNRVGGIVTNWALVS-------MNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKA 262 (352)
Q Consensus 191 ~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~g~~~-------~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~ 262 (352)
+.|+.+.+......++.+ +|+|.++.+..-... .....+..|+...+.+|.|++|.|.......-.+... .
T Consensus 318 eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~-~ 396 (457)
T COG0493 318 EEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEF-G 396 (457)
T ss_pred hcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCccccccccc-c
Confidence 567888888888888874 578888765321000 0111222346678999999999997655322111111 1
Q ss_pred ccc-ccccceeeccc-ccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHc
Q 039605 263 LDM-NTAEDAIVKLT-REIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 321 (352)
Q Consensus 263 ~~~-~~g~~~vv~~~-~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l 321 (352)
+.. ..+.+.+.+.. .+..|++|++||+.... . ....++.+|+.+|+.|..++
T Consensus 397 ~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~------~-~vv~ai~eGr~aak~i~~~~ 450 (457)
T COG0493 397 LKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGA------A-LVVWAIAEGREAAKAIDKEL 450 (457)
T ss_pred cccCCCCceecccccccccCCCeeeCceeccch------h-hhhhHHhhchHHHHhhhHHH
Confidence 222 23444444554 78999999999998531 1 12234789999999999444
No 252
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=6.4e-08 Score=89.16 Aligned_cols=123 Identities=11% Similarity=0.147 Sum_probs=72.0
Q ss_pred HHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCC
Q 039605 180 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRG 259 (352)
Q Consensus 180 ~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g 259 (352)
..+.+.+.+ ++.|++|+..+....+...+++-.-|.... +.++ +...-..+.|+.|.|..+.....++..
T Consensus 240 mae~v~~~m-~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~------t~t~---~~~~~~ydTVl~AiGR~~~~~~l~L~~ 309 (503)
T KOG4716|consen 240 MAELVAEHM-EERGIKFLRKTVPERVEQIDDGKLRVFYKN------TNTG---EEGEEEYDTVLWAIGRKALTDDLNLDN 309 (503)
T ss_pred HHHHHHHHH-HHhCCceeecccceeeeeccCCcEEEEeec------cccc---ccccchhhhhhhhhccccchhhcCCCc
Confidence 334444444 467999999988888887543322343322 2222 223445688999999765432222211
Q ss_pred cccccc--ccccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHH
Q 039605 260 MKALDM--NTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 319 (352)
Q Consensus 260 ~~~~~~--~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~ 319 (352)
.++.. ..+.+.+.+...+++|.+|+.||.... -+..-|. ++.+|+.-|..+..
T Consensus 310 -~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~---kpELTPv---AIqsGrlLa~Rlf~ 364 (503)
T KOG4716|consen 310 -AGVKTNEKSGKIPVDDEEATNVPYVYAVGDILED---KPELTPV---AIQSGRLLARRLFA 364 (503)
T ss_pred -cceeecccCCccccChHHhcCCCceEEecceecC---Ccccchh---hhhhchHHHHHHhc
Confidence 12222 235555556677899999999999743 2333232 36778887776653
No 253
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.80 E-value=7e-08 Score=96.51 Aligned_cols=40 Identities=28% Similarity=0.587 Sum_probs=35.9
Q ss_pred CccEEEECCcHHHHHHHHHHhcC---CCCcEEEEeccCCCCCC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKN---PNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~---~G~kV~viEk~~~~GG~ 145 (352)
..+++|||||++||+||+.|++. +|.+|+|+|+.+.+||.
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~ 64 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGS 64 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCC
Confidence 35899999999999999999985 27899999999998886
No 254
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.80 E-value=2.5e-08 Score=99.27 Aligned_cols=126 Identities=22% Similarity=0.329 Sum_probs=73.0
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHH------------HHHHcCCccc---c-CCCe
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHL------------FLDELGIDYD---E-QDNY 171 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~------------~l~~~Gi~~~---~-~~~~ 171 (352)
||+|||+|++|+.+|..|++. |.+|+||||.. .||.+...-..|.+. ....+|+... . .-++
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~-g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQL-GADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 899999999999999999999 99999999975 676643333333222 2234566432 0 0011
Q ss_pred EEE-echHHHH----HHHHHHHHcCCCcEEEccceeEEEE--EeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEE
Q 039605 172 VVI-KHAALFT----STIMSKLLARPNVKLFNAVAAEDLI--VKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVS 244 (352)
Q Consensus 172 ~~~-~~~~~~~----~~L~~~~~~~~gv~i~~~t~v~~l~--~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIl 244 (352)
... .+..... ..+.+.+ +..|++++.++ +..+. .+...+ .+...+ |+..++.+|.||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l-~~~gV~~~~g~-~~~~~~~~~~~~v-~V~~~~------------g~~~~~~~d~lVi 145 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARL-EREGVRVIAGR-GRLIDPGLGPHRV-KVTTAD------------GGEETLDADVVLI 145 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHCCCEEEEEE-EEEeecccCCCEE-EEEeCC------------CceEEEecCEEEE
Confidence 000 1111111 2222333 35699998884 33322 223333 232221 1224799999999
Q ss_pred ccCCCC
Q 039605 245 SCGHDG 250 (352)
Q Consensus 245 AtG~~~ 250 (352)
|||..+
T Consensus 146 ATGs~p 151 (466)
T PRK07845 146 ATGASP 151 (466)
T ss_pred cCCCCC
Confidence 999865
No 255
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.76 E-value=1.4e-07 Score=93.82 Aligned_cols=38 Identities=26% Similarity=0.411 Sum_probs=32.9
Q ss_pred CCCccEEEECCcHHHHHHHHHHhcC-CCCcEEEEeccCC
Q 039605 104 HADTDVVVVGAGSAGLSCAYEISKN-PNVQVAIIEQSVS 141 (352)
Q Consensus 104 ~~~~DVvIIGgG~aGl~aA~~la~~-~G~kV~viEk~~~ 141 (352)
...+||||||||++|+++|+.|++. +|.+|+|+||.+.
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~ 42 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDS 42 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCC
Confidence 3478999999999999999999984 5899999999333
No 256
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.75 E-value=1.2e-07 Score=91.43 Aligned_cols=120 Identities=18% Similarity=0.262 Sum_probs=73.4
Q ss_pred cEEEECCcHHHHHHHHHHhcC-CCCcEEEEeccCCCCCCcceeecc-----hHHHHHHHc-CCc-----cccC------C
Q 039605 108 DVVVVGAGSAGLSCAYEISKN-PNVQVAIIEQSVSPGGASGSVVRK-----PAHLFLDEL-GID-----YDEQ------D 169 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~-~G~kV~viEk~~~~GG~~~~~~~~-----~~~~~l~~~-Gi~-----~~~~------~ 169 (352)
||+|||||++|+++|+.|++. +|++|+|||+.+..++...-++.. ....+++.+ +.. +... .
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 899999999999999999973 499999999988776641111111 111122221 111 0000 0
Q ss_pred CeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCC
Q 039605 170 NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHD 249 (352)
Q Consensus 170 ~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~ 249 (352)
.-+...+..++.+.+.+++. .+ ++.+.+|.++ +.+. +.+.+ ..+++|+.||.|+|..
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~--~~--i~~~~~V~~v--~~~~---v~l~d--------------g~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFP--EG--VILGRKAVGL--DADG---VDLAP--------------GTRINARSVIDCRGFK 137 (370)
T ss_pred CCceEEEHHHHHHHHHHhhc--cc--EEecCEEEEE--eCCE---EEECC--------------CCEEEeeEEEECCCCC
Confidence 11234455677777765553 23 6668788877 3333 33332 2689999999999966
Q ss_pred C
Q 039605 250 G 250 (352)
Q Consensus 250 ~ 250 (352)
+
T Consensus 138 s 138 (370)
T TIGR01789 138 P 138 (370)
T ss_pred C
Confidence 5
No 257
>PRK09897 hypothetical protein; Provisional
Probab=98.75 E-value=1.8e-07 Score=93.91 Aligned_cols=129 Identities=17% Similarity=0.265 Sum_probs=79.8
Q ss_pred cEEEECCcHHHHHHHHHHhcC-CCCcEEEEeccCCCCCCcceee-------------------cchHHHHHHH-------
Q 039605 108 DVVVVGAGSAGLSCAYEISKN-PNVQVAIIEQSVSPGGASGSVV-------------------RKPAHLFLDE------- 160 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~-~G~kV~viEk~~~~GG~~~~~~-------------------~~~~~~~l~~------- 160 (352)
+|+|||||++|+++|.+|.+. ..++|+|+|++..+|.+..... .....+|+..
T Consensus 3 ~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~~ 82 (534)
T PRK09897 3 KIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHLQ 82 (534)
T ss_pred eEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHHH
Confidence 799999999999999999874 1469999999887774411110 0123345433
Q ss_pred -cCCccccC--CCeEEEechHHHHHH----HHHHHHcCCC--cEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCC
Q 039605 161 -LGIDYDEQ--DNYVVIKHAALFTST----IMSKLLARPN--VKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSC 231 (352)
Q Consensus 161 -~Gi~~~~~--~~~~~~~~~~~~~~~----L~~~~~~~~g--v~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~ 231 (352)
++++.... ..|........|.+. +.+.+. ..| +.++.+++|+++..+++++. +.+.+
T Consensus 83 ~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~-~~G~~V~v~~~~~V~~I~~~~~g~~-V~t~~------------ 148 (534)
T PRK09897 83 RYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQAR-QQKFAVAVYESCQVTDLQITNAGVM-LATNQ------------ 148 (534)
T ss_pred hcCCcceeecCCccCCeecchHHHHHHHHHHHHHHH-HcCCeEEEEECCEEEEEEEeCCEEE-EEECC------------
Confidence 34332211 123323333334333 333333 344 78888889999988776543 43322
Q ss_pred CCCeEEEeCEEEEccCCCCC
Q 039605 232 MDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 232 g~~~~i~A~~VIlAtG~~~~ 251 (352)
....+.+|.||+|+|+..+
T Consensus 149 -gg~~i~aD~VVLAtGh~~p 167 (534)
T PRK09897 149 -DLPSETFDLAVIATGHVWP 167 (534)
T ss_pred -CCeEEEcCEEEECCCCCCC
Confidence 1257999999999998544
No 258
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.74 E-value=1.6e-07 Score=79.36 Aligned_cols=123 Identities=17% Similarity=0.261 Sum_probs=75.4
Q ss_pred EEECCcHHHHHHHHHHhcCC----CCcEEEEeccCCCC-CC-cc-----------------eeec---chHHHHHHHcCC
Q 039605 110 VVVGAGSAGLSCAYEISKNP----NVQVAIIEQSVSPG-GA-SG-----------------SVVR---KPAHLFLDELGI 163 (352)
Q Consensus 110 vIIGgG~aGl~aA~~la~~~----G~kV~viEk~~~~G-G~-~~-----------------~~~~---~~~~~~l~~~Gi 163 (352)
+|||+|++|++++.+|.+.. ..+|+|+|+.+. | |. .. .... ....+|+++.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~ 79 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGA 79 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-cccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCc
Confidence 49999999999999998762 679999999665 4 32 00 0011 235677777663
Q ss_pred ---ccccCCCeEEEechHHHHHHHHHHHHc--CCCcEE-EccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEE
Q 039605 164 ---DYDEQDNYVVIKHAALFTSTIMSKLLA--RPNVKL-FNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVM 237 (352)
Q Consensus 164 ---~~~~~~~~~~~~~~~~~~~~L~~~~~~--~~gv~i-~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i 237 (352)
.......|.......+|.+..++.+.+ ..++++ +...+|+++...++.. .+.+.+ ...+
T Consensus 80 ~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~-~v~~~~--------------g~~~ 144 (156)
T PF13454_consen 80 DEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGY-RVVTAD--------------GQSI 144 (156)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcE-EEEECC--------------CCEE
Confidence 111112233222334555544444443 235554 2355888888877654 344433 2578
Q ss_pred EeCEEEEccCC
Q 039605 238 EAKVVVSSCGH 248 (352)
Q Consensus 238 ~A~~VIlAtG~ 248 (352)
.+|.||+|+|+
T Consensus 145 ~~d~VvLa~Gh 155 (156)
T PF13454_consen 145 RADAVVLATGH 155 (156)
T ss_pred EeCEEEECCCC
Confidence 99999999995
No 259
>PRK07233 hypothetical protein; Provisional
Probab=98.73 E-value=2.8e-07 Score=90.39 Aligned_cols=37 Identities=35% Similarity=0.665 Sum_probs=35.2
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
+|+|||||++||+||+.|+++ |++|+|+|+.+.+||.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-G~~v~vlE~~~~~GG~ 37 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQLGGL 37 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCCCc
Confidence 589999999999999999999 9999999999999885
No 260
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.72 E-value=1.1e-07 Score=96.69 Aligned_cols=121 Identities=14% Similarity=0.246 Sum_probs=85.9
Q ss_pred HHHHHHHhcCCCCcEEEEeccCCCCCC-------cceee------c-----------------------------chHHH
Q 039605 119 LSCAYEISKNPNVQVAIIEQSVSPGGA-------SGSVV------R-----------------------------KPAHL 156 (352)
Q Consensus 119 l~aA~~la~~~G~kV~viEk~~~~GG~-------~~~~~------~-----------------------------~~~~~ 156 (352)
|.||+.+++. |++|+||||....+++ ..... . ...++
T Consensus 1 l~AAl~aa~~-G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~~l~~~a~~~i~ 79 (570)
T PRK05675 1 MRAALQLAQG-GHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSVGPEAVF 79 (570)
T ss_pred ChhHHhHHhc-CCcEEEEEcCCCCCchHHHhhhhhhcccCCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 5789999999 9999999999765544 11100 0 12458
Q ss_pred HHHHcCCccccCC--CeE------------------EEe-----chHHHHHHHHHHHHcCCCcEEEccceeEEEEEe-CC
Q 039605 157 FLDELGIDYDEQD--NYV------------------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GN 210 (352)
Q Consensus 157 ~l~~~Gi~~~~~~--~~~------------------~~~-----~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~-~g 210 (352)
||.++|++|+... .+. ... ....+...|.+.+. +.|++++.++.+++|+.+ ++
T Consensus 80 ~L~~~Gv~F~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~~~tG~~i~~~L~~~~~-~~gi~i~~~~~~~~Li~~~~g 158 (570)
T PRK05675 80 ELEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQGNL-KNGTTFLNEWYAVDLVKNQDG 158 (570)
T ss_pred HHHHcCCccccCCCCceeecccCccccccccCCccceEEecCCCCHHHHHHHHHHHHh-ccCCEEEECcEEEEEEEcCCC
Confidence 9999999997531 111 111 13456677777776 679999999999999985 68
Q ss_pred EEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 211 RVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 211 ~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
+|.|+...+ ..+ ++...|.|+.||+|||+++
T Consensus 159 ~v~Gv~~~~------~~~---g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 159 AVVGVIAIC------IET---GETVYIKSKATVLATGGAG 189 (570)
T ss_pred eEEEEEEEE------cCC---CcEEEEecCeEEECCCCcc
Confidence 999998732 112 2457899999999999876
No 261
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.71 E-value=1.8e-07 Score=86.07 Aligned_cols=55 Identities=16% Similarity=0.103 Sum_probs=43.4
Q ss_pred HHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCC
Q 039605 182 STIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHD 249 (352)
Q Consensus 182 ~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~ 249 (352)
+.|..++. +.|..++.+-+|.+....+++|+.+.+.+. ....++|+..|+|+|.+
T Consensus 262 ~~L~~~f~-~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~------------~diP~~a~~~VLAsGsf 316 (421)
T COG3075 262 NQLQRQFE-QLGGLWMPGDEVKKATCKGGRVTEIYTRNH------------ADIPLRADFYVLASGSF 316 (421)
T ss_pred HHHHHHHH-HcCceEecCCceeeeeeeCCeEEEEEeccc------------ccCCCChhHeeeecccc
Confidence 34444444 568899999999999999999998887542 23579999999999975
No 262
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.71 E-value=1.7e-07 Score=69.86 Aligned_cols=78 Identities=19% Similarity=0.227 Sum_probs=61.6
Q ss_pred EEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHHHH
Q 039605 109 VVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMSKL 188 (352)
Q Consensus 109 VvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~~~ 188 (352)
++|||||+.|+.+|..|++. |.+|+||++.+.+.. ....+....+.+.+
T Consensus 2 vvViGgG~ig~E~A~~l~~~-g~~vtli~~~~~~~~------------------------------~~~~~~~~~~~~~l 50 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAEL-GKEVTLIERSDRLLP------------------------------GFDPDAAKILEEYL 50 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHT-TSEEEEEESSSSSST------------------------------TSSHHHHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHh-CcEEEEEeccchhhh------------------------------hcCHHHHHHHHHHH
Confidence 79999999999999999999 999999999976531 01244445555555
Q ss_pred HcCCCcEEEccceeEEEEEeCCEEEEEEEcc
Q 039605 189 LARPNVKLFNAVAAEDLIVKGNRVGGIVTNW 219 (352)
Q Consensus 189 ~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~ 219 (352)
. +.|+++++++.+.++..+++++. |.+++
T Consensus 51 ~-~~gV~v~~~~~v~~i~~~~~~~~-V~~~~ 79 (80)
T PF00070_consen 51 R-KRGVEVHTNTKVKEIEKDGDGVE-VTLED 79 (80)
T ss_dssp H-HTTEEEEESEEEEEEEEETTSEE-EEEET
T ss_pred H-HCCCEEEeCCEEEEEEEeCCEEE-EEEec
Confidence 5 56999999999999999876665 76654
No 263
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=5.4e-08 Score=93.23 Aligned_cols=128 Identities=25% Similarity=0.373 Sum_probs=84.6
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC----------CCCCC-ccee------ecchHHHHHHHcCCccccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV----------SPGGA-SGSV------VRKPAHLFLDELGIDYDEQ 168 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~----------~~GG~-~~~~------~~~~~~~~l~~~Gi~~~~~ 168 (352)
+|||||||||-||+.||.++++. |.+.+++-.+- ..||- .+.. +..-..+.++..|+.|...
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~-Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~L 106 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARL-GARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKVL 106 (679)
T ss_pred cccEEEECCCccchHHHHHHHhc-CCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHHh
Confidence 78999999999999999999999 99999998753 22321 1111 1112234445555554321
Q ss_pred ----CCeEE----EechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCC-----EEEEEEEcccceeccCCCCCCCCCe
Q 039605 169 ----DNYVV----IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGN-----RVGGIVTNWALVSMNHDSQSCMDPN 235 (352)
Q Consensus 169 ----~~~~~----~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g-----~v~gv~~~~g~~~~~~~~~~~g~~~ 235 (352)
+...+ ..+...|...+.+.+...++.+++.+ .|.+|+..+. +|.||.+.+| .
T Consensus 107 Nrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~dg--------------t 171 (679)
T KOG2311|consen 107 NRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVDG--------------T 171 (679)
T ss_pred hccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEecC--------------c
Confidence 11111 11233455666666666778999888 6777777643 3888888653 6
Q ss_pred EEEeCEEEEccCCC
Q 039605 236 VMEAKVVVSSCGHD 249 (352)
Q Consensus 236 ~i~A~~VIlAtG~~ 249 (352)
.+.|+.||+.||.+
T Consensus 172 ~v~a~~VilTTGTF 185 (679)
T KOG2311|consen 172 VVYAESVILTTGTF 185 (679)
T ss_pred EeccceEEEeeccc
Confidence 89999999999975
No 264
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.69 E-value=3.6e-08 Score=96.90 Aligned_cols=39 Identities=31% Similarity=0.518 Sum_probs=34.6
Q ss_pred CccEEEECCcHHHHHHHHHHh-cCCCCcEEEEeccCCCCCC
Q 039605 106 DTDVVVVGAGSAGLSCAYEIS-KNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la-~~~G~kV~viEk~~~~GG~ 145 (352)
...|+|||+||+|+.||.+|. +. |++|.|+||.+.+||.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~-g~~VtlfEk~p~pgGL 78 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHE-RVKVDIFEKLPNPYGL 78 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhc-CCeEEEEecCCCCccE
Confidence 347999999999999999865 56 9999999999999884
No 265
>PRK07846 mycothione reductase; Reviewed
Probab=98.68 E-value=1.4e-07 Score=93.51 Aligned_cols=39 Identities=23% Similarity=0.446 Sum_probs=31.9
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcce
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGS 148 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~ 148 (352)
+||++|||+||+|..||.++ . |+||+|||+. ..||+|-.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~-G~~V~lie~~-~~GGtC~n 39 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--A-DKRIAIVEKG-TFGGTCLN 39 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--C-CCeEEEEeCC-CCCCcccC
Confidence 48999999999999998763 6 9999999986 46665433
No 266
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.67 E-value=7.5e-08 Score=95.45 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=31.9
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcce
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGS 148 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~ 148 (352)
+|||+|||+|++|..||.. .. |+||+|||+. ..||+|-.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~-g~~V~lie~~-~~GGtC~n 40 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FA-DKRIAIVEKG-TFGGTCLN 40 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HC-CCeEEEEeCC-CCCCeeec
Confidence 6899999999999998654 36 9999999985 56776433
No 267
>PRK02106 choline dehydrogenase; Validated
Probab=98.66 E-value=2.7e-07 Score=93.93 Aligned_cols=57 Identities=18% Similarity=0.318 Sum_probs=43.2
Q ss_pred HHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCC
Q 039605 185 MSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 185 ~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
+..+.++.|++++.++.|.+|+.++++++||++.+. + +....+.++.||+|+|+...
T Consensus 207 l~~a~~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~-------~---~~~~~~~ak~VILaaGai~T 263 (560)
T PRK02106 207 LDPALKRPNLTIVTHALTDRILFEGKRAVGVEYERG-------G---GRETARARREVILSAGAINS 263 (560)
T ss_pred hccccCCCCcEEEcCCEEEEEEEeCCeEEEEEEEeC-------C---cEEEEEeeeeEEEccCCCCC
Confidence 333444678999999999999999888999987431 1 12345788999999998653
No 268
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.66 E-value=4.9e-07 Score=83.37 Aligned_cols=144 Identities=24% Similarity=0.307 Sum_probs=86.1
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCC--CCCC--cce-------------------------------e
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVS--PGGA--SGS-------------------------------V 149 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~--~GG~--~~~-------------------------------~ 149 (352)
.++||+|||+|.+||.+|..|+.+ |++|+|+|+... .||. +.. .
T Consensus 4 ~~~dvivvgaglaglvaa~elA~a-G~~V~ildQEgeqnlGGQAfWSfGGLF~vdSPEQRRlgirDsldLArqDW~gtA~ 82 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADA-GKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQRRLGIRDSLDLARQDWFGTAA 82 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhc-CceEEEEcccccccccceeeeecccEEEecCHHHhhcccchhHHHHHHhhhcccc
Confidence 478999999999999999999999 999999998643 3433 000 0
Q ss_pred ecch-------------------HHHHHHHcCCccccC------------------CCeEEEec-----hHHHHHHHHHH
Q 039605 150 VRKP-------------------AHLFLDELGIDYDEQ------------------DNYVVIKH-----AALFTSTIMSK 187 (352)
Q Consensus 150 ~~~~-------------------~~~~l~~~Gi~~~~~------------------~~~~~~~~-----~~~~~~~L~~~ 187 (352)
+..| ...||...|+.+-.. +.|..... ..-+.+.+. +
T Consensus 83 FDRPEDhWPr~WAeAYl~FAAGEkR~WL~~~GmrwFPvVGWAERGG~~A~ghGNSVPRFHiTWGTGPgvl~pFvr~~r-e 161 (552)
T COG3573 83 FDRPEDHWPRQWAEAYLDFAAGEKRSWLHRRGMRWFPVVGWAERGGSDAQGHGNSVPRFHITWGTGPGVLEPFVRRLR-E 161 (552)
T ss_pred cCCccccchHHHHHHHHhhhccchhHHHHHcCCeeeeeccchhhCCcccCCCCCCCcceEEeecCCcchhhHHHHHHH-H
Confidence 0000 113444445432110 00111110 112444433 3
Q ss_pred HHcCCCcEEEccceeEEEEEeCCEEEEEEEc---ccceeccCCCCC-CCCCeEEEeCEEEEccCCCC
Q 039605 188 LLARPNVKLFNAVAAEDLIVKGNRVGGIVTN---WALVSMNHDSQS-CMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 188 ~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~---~g~~~~~~~~~~-~g~~~~i~A~~VIlAtG~~~ 250 (352)
.+++.-++|.+.+.|..|...+++|+||.-. ...+..-..... -....+++|..||+++|+.+
T Consensus 162 ~~~~~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SGGIG 228 (552)
T COG3573 162 AQRRGRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASGGIG 228 (552)
T ss_pred HHhCCceEEEeeeeccceEeeCCeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecCCcC
Confidence 3446779999999999999999999988642 111111111100 00125789999999999754
No 269
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.64 E-value=8.2e-08 Score=86.09 Aligned_cols=124 Identities=16% Similarity=0.160 Sum_probs=75.9
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcce------------e-ec---chHHHHHH---HcCCccccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGS------------V-VR---KPAHLFLD---ELGIDYDEQ 168 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~------------~-~~---~~~~~~l~---~~Gi~~~~~ 168 (352)
+|+|||+|++|++||+.|++. |+.|+|+||+.-+||-... . +. ....++++ +-|+--.+.
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-G~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~ 81 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-GREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWT 81 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-CcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeecc
Confidence 799999999999999999999 9999999999888775111 1 11 11233332 334322221
Q ss_pred -CCeEEE------------echHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCe
Q 039605 169 -DNYVVI------------KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPN 235 (352)
Q Consensus 169 -~~~~~~------------~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~ 235 (352)
.-|... ....--++.|.+.+ ....+++++++|+++...++ .+.+.++++ ..
T Consensus 82 ~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~L--AtdL~V~~~~rVt~v~~~~~-~W~l~~~~g-------------~~ 145 (331)
T COG3380 82 PAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFL--ATDLTVVLETRVTEVARTDN-DWTLHTDDG-------------TR 145 (331)
T ss_pred ccccccccCCCCCCCCCCccccCcchHHHHHHH--hccchhhhhhhhhhheecCC-eeEEEecCC-------------Cc
Confidence 001100 00011223444433 34788999999999988744 445666432 35
Q ss_pred EEEeCEEEEccCC
Q 039605 236 VMEAKVVVSSCGH 248 (352)
Q Consensus 236 ~i~A~~VIlAtG~ 248 (352)
...+|.||+|.=.
T Consensus 146 ~~~~d~vvla~PA 158 (331)
T COG3380 146 HTQFDDVVLAIPA 158 (331)
T ss_pred ccccceEEEecCC
Confidence 6788888887653
No 270
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.63 E-value=1.6e-07 Score=89.06 Aligned_cols=37 Identities=32% Similarity=0.674 Sum_probs=33.6
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGG 144 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG 144 (352)
-+|+|||||++|+++|+.|.++ |++|+|+|+...+.+
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~-G~~v~VlE~~e~~R~ 39 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRK-GIDVVVLESREDPRG 39 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHc-CCeEEEEeecccccc
Confidence 4899999999999999999999 999999999766544
No 271
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.61 E-value=3.7e-07 Score=84.29 Aligned_cols=36 Identities=44% Similarity=0.718 Sum_probs=33.4
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSP 142 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~ 142 (352)
..||+|||+|.-|+++|++|+++ |.++++||+-+.+
T Consensus 7 ~~~viiVGAGVfG~stAyeLaK~-g~killLeqf~~p 42 (399)
T KOG2820|consen 7 SRDVIIVGAGVFGLSTAYELAKR-GDKILLLEQFPLP 42 (399)
T ss_pred ceeEEEEcccccchHHHHHHHhc-CCeEEEEeccCCC
Confidence 57999999999999999999999 9999999997654
No 272
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.60 E-value=2.5e-07 Score=92.00 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 180 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 180 ~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
+...|...+ ++.|+.++.++.|++|..+.+++.||.+.. -.|++.+||.|+|.|.
T Consensus 189 lC~ala~~A-~~~GA~viE~cpV~~i~~~~~~~~gVeT~~---------------G~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 189 LCQALARAA-SALGALVIENCPVTGLHVETDKFGGVETPH---------------GSIETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHH-HhcCcEEEecCCcceEEeecCCccceeccC---------------cceecceEEechhHHH
Confidence 445554444 478999999999999999988888888754 3799999999999986
No 273
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.60 E-value=9.4e-08 Score=95.55 Aligned_cols=95 Identities=20% Similarity=0.337 Sum_probs=61.6
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHH
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIM 185 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~ 185 (352)
.+||||||||+.||+||..|+++ |++|+|+||+..+||.....- -.|+.|+....+....+...+.+.+.
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~-G~~V~VlE~~~~~GG~a~t~e---------~~Gf~fd~G~~~~~~~~~~~~~~~l~ 72 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARA-GLKVTVLEKNDRVGGRARTFE---------LDGFRFDTGPSWYLMPDPGPLFRELG 72 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhC-CCEEEEEEecCCCCcceEEEe---------ccceEeccCcceeecCchHHHHHHhc
Confidence 57999999999999999999999 999999999999998532211 11555655443333333334444433
Q ss_pred HHHHcCCCcEEEccceeEEEEEeCCEE
Q 039605 186 SKLLARPNVKLFNAVAAEDLIVKGNRV 212 (352)
Q Consensus 186 ~~~~~~~gv~i~~~t~v~~l~~~~g~v 212 (352)
+ ....++.+........+...+++.
T Consensus 73 ~--l~~~~l~~~~~~~~~~~~~~~g~~ 97 (487)
T COG1233 73 N--LDADGLDLLPPDPAYRVFLPDGDA 97 (487)
T ss_pred c--CcccceeeeccCCceeeecCCCCE
Confidence 2 234556665554455555544433
No 274
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.58 E-value=7.6e-07 Score=90.10 Aligned_cols=57 Identities=19% Similarity=0.291 Sum_probs=42.9
Q ss_pred HHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 184 IMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 184 L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
++..+.++.|++|+.++.|.+|+.++++++||++..+ ++ ....+.++.||+|.|...
T Consensus 199 ~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~-------~~---~~~~~~ak~VIlaAGai~ 255 (532)
T TIGR01810 199 YLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKG-------GR---KEHTEANKEVILSAGAIN 255 (532)
T ss_pred HhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeC-------Cc---EEEEEEeeeEEEccCCCC
Confidence 3444555779999999999999999889999987431 00 123468899999999844
No 275
>PRK12831 putative oxidoreductase; Provisional
Probab=98.57 E-value=1.1e-07 Score=94.60 Aligned_cols=101 Identities=23% Similarity=0.303 Sum_probs=66.2
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHH
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTI 184 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L 184 (352)
...||+||||||+|+++|+.|++. |++|+|+|+...+||... +|++... + ...++....
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-G~~V~v~e~~~~~GG~l~-------------~gip~~~-----l--~~~~~~~~~ 197 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-GYDVTIFEALHEPGGVLV-------------YGIPEFR-----L--PKETVVKKE 197 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCCCCeee-------------ecCCCcc-----C--CccHHHHHH
Confidence 467999999999999999999999 999999999888887421 2332110 0 011233333
Q ss_pred HHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCC
Q 039605 185 MSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHD 249 (352)
Q Consensus 185 ~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~ 249 (352)
.+.+. +.|+++++++.+.. . +...+ ....+.+|.||+|||.+
T Consensus 198 ~~~~~-~~gv~i~~~~~v~~------~---v~~~~-------------~~~~~~~d~viiAtGa~ 239 (464)
T PRK12831 198 IENIK-KLGVKIETNVVVGK------T---VTIDE-------------LLEEEGFDAVFIGSGAG 239 (464)
T ss_pred HHHHH-HcCCEEEcCCEECC------c---CCHHH-------------HHhccCCCEEEEeCCCC
Confidence 44444 56999999874411 0 11111 01245689999999984
No 276
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.56 E-value=1.2e-06 Score=88.12 Aligned_cols=36 Identities=25% Similarity=0.404 Sum_probs=34.0
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPG 143 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~G 143 (352)
|||+|||+|++|+.+|+.|++. |++|+|||++...|
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~-g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA-GLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC-CCeEEEEeccCccC
Confidence 6999999999999999999999 99999999987765
No 277
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.55 E-value=9.1e-07 Score=85.50 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 179 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 179 ~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
.+.+.|.+.+.++.|++++++++|.+|.+.++.-+-|.+.+ . ..++..+++|++|++..|+.+
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~------~---~~~~~~~v~a~FVfvGAGG~a 244 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKD------L---KTGEKREVRAKFVFVGAGGGA 244 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEe------c---CCCCeEEEECCEEEECCchHh
Confidence 56688888888888999999999999999866544555532 1 123568999999999999876
No 278
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.54 E-value=1.7e-06 Score=85.25 Aligned_cols=40 Identities=25% Similarity=0.285 Sum_probs=37.6
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
.+|||||||+|.+|+.+|..|++. |+||+++|+++..||.
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~-GkkVLhlD~n~~yGG~ 42 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVN-GKKVLHMDRNPYYGGE 42 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhC-CCEEEEecCCCCcCcc
Confidence 379999999999999999999999 9999999999988876
No 279
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.53 E-value=3.4e-07 Score=96.39 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=72.2
Q ss_pred cEEEECCcHHHHHHHHHHhcC-CCCcEEEEeccCCC---CCCcceeecchHHHHHHHcC-----------Cccc-----c
Q 039605 108 DVVVVGAGSAGLSCAYEISKN-PNVQVAIIEQSVSP---GGASGSVVRKPAHLFLDELG-----------IDYD-----E 167 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~-~G~kV~viEk~~~~---GG~~~~~~~~~~~~~l~~~G-----------i~~~-----~ 167 (352)
+|+|||||++|+++|+.|++. +|++|+|+||.+.. |.+ ..+.....+.+..++ ..++ .
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~G--i~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWG--VVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHF 79 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcc--eEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEE
Confidence 699999999999999999985 37999999998753 322 122222222221111 0000 0
Q ss_pred C-------CCeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeC
Q 039605 168 Q-------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAK 240 (352)
Q Consensus 168 ~-------~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~ 240 (352)
. +......+..++.+.|++++. +.|++++++++++++. ...+.+|
T Consensus 80 ~g~~~~~~g~~~~~i~R~~L~~~L~e~a~-~~GV~i~~g~~v~~i~---------------------------~~~~~~D 131 (765)
T PRK08255 80 KGRRIRSGGHGFAGIGRKRLLNILQARCE-ELGVKLVFETEVPDDQ---------------------------ALAADAD 131 (765)
T ss_pred CCEEEEECCeeEecCCHHHHHHHHHHHHH-HcCCEEEeCCccCchh---------------------------hhhcCCC
Confidence 0 111123456778888888887 4699999997655431 0135789
Q ss_pred EEEEccCCCC
Q 039605 241 VVVSSCGHDG 250 (352)
Q Consensus 241 ~VIlAtG~~~ 250 (352)
.||.|+|.++
T Consensus 132 ~VVgADG~~S 141 (765)
T PRK08255 132 LVIASDGLNS 141 (765)
T ss_pred EEEEcCCCCH
Confidence 9999999776
No 280
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.52 E-value=1.1e-07 Score=68.67 Aligned_cols=36 Identities=33% Similarity=0.647 Sum_probs=32.7
Q ss_pred EECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcc
Q 039605 111 VVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASG 147 (352)
Q Consensus 111 IIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~ 147 (352)
|||||++||++|+.|++. |.+|+|+|+.+.+||...
T Consensus 1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDRLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-TSEEEEEESSSSSSGGGC
T ss_pred CEeeCHHHHHHHHHHHHC-CCcEEEEecCcccCccee
Confidence 899999999999999999 999999999999998643
No 281
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.50 E-value=1.9e-06 Score=93.18 Aligned_cols=155 Identities=20% Similarity=0.218 Sum_probs=100.8
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCC-cEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNV-QVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIM 185 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~-kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~ 185 (352)
-.|+|||+|+.|+..|..|++. |. .|+|+|..+... ..+.
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~-G~~vV~vv~~~~~~~--------------------------------------~~l~ 358 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAA-GIAVVAIIDARADVS--------------------------------------PEAR 358 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCceEEEEccCcchh--------------------------------------HHHH
Confidence 4799999999999999999999 85 588998764210 1123
Q ss_pred HHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcccccc
Q 039605 186 SKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDM 265 (352)
Q Consensus 186 ~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~ 265 (352)
+++. +.|++++.++.+.++..+ +++.++.+... +++..++.+|.|+++.|..+........+.. +..
T Consensus 359 ~~L~-~~GV~i~~~~~v~~i~g~-~~v~~V~l~~~----------~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~-~~~ 425 (985)
T TIGR01372 359 AEAR-ELGIEVLTGHVVAATEGG-KRVSGVAVARN----------GGAGQRLEADALAVSGGWTPVVHLFSQRGGK-LAW 425 (985)
T ss_pred HHHH-HcCCEEEcCCeEEEEecC-CcEEEEEEEec----------CCceEEEECCEEEEcCCcCchhHHHHhcCCC-eee
Confidence 3443 679999999999888654 45666665310 1134689999999999965543221111110 101
Q ss_pred ccccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCC
Q 039605 266 NTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 323 (352)
Q Consensus 266 ~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~ 323 (352)
+..... ....+..||+|++||+.... ....++.+|.+||..|...|..
T Consensus 426 ~~~~~~--~~~~t~v~gVyaaGD~~g~~--------~~~~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 426 DAAIAA--FLPGDAVQGCILAGAANGLF--------GLAAALADGAAAGAAAARAAGF 473 (985)
T ss_pred ccccCc--eecCCCCCCeEEeeccCCcc--------CHHHHHHHHHHHHHHHHHHcCC
Confidence 110000 01124589999999876321 2345688999999999999865
No 282
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.48 E-value=7.3e-07 Score=88.07 Aligned_cols=115 Identities=14% Similarity=0.163 Sum_probs=69.2
Q ss_pred cEEEECCcHHHHHHHHHHhcC-CCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 108 DVVVVGAGSAGLSCAYEISKN-PNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~-~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
+|||||||++|+.||..|++. ++.+|+|||+.+..+- .. .++++-..+. .....+......+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~------~~--------~~lp~~~~~~---~~~~~~~~~~~~~ 65 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSF------AN--------CALPYYIGEV---VEDRKYALAYTPE 65 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCccc------cc--------CCcchhhcCc---cCCHHHcccCCHH
Confidence 699999999999999999874 2689999999875431 00 0111100000 0001111111112
Q ss_pred HHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCC
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
.+.++.|++++.+++|+++..++..+. +.... + ++..++.+|++|+|||....
T Consensus 66 ~~~~~~~i~v~~~~~V~~Id~~~~~v~-~~~~~--------~---~~~~~~~yd~lviAtGs~~~ 118 (438)
T PRK13512 66 KFYDRKQITVKTYHEVIAINDERQTVT-VLNRK--------T---NEQFEESYDKLILSPGASAN 118 (438)
T ss_pred HHHHhCCCEEEeCCEEEEEECCCCEEE-EEECC--------C---CcEEeeecCEEEECCCCCCC
Confidence 333356999999999999987765442 22110 0 12346789999999998653
No 283
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.48 E-value=1.1e-06 Score=89.35 Aligned_cols=87 Identities=21% Similarity=0.336 Sum_probs=63.1
Q ss_pred HHHHHHHcCCccccCCC--eE------------------EEe-----chHHHHHHHHHHHHcCCCcEEEccceeEEEEEe
Q 039605 154 AHLFLDELGIDYDEQDN--YV------------------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK 208 (352)
Q Consensus 154 ~~~~l~~~Gi~~~~~~~--~~------------------~~~-----~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~ 208 (352)
.++||+++|++|+.... +. ... ....+...|.+++. +.|+++++++.+++|+.+
T Consensus 70 ~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~~R~~~~~~~~G~~i~~~L~~~~~-~~gi~i~~~~~~~~Li~~ 148 (565)
T TIGR01816 70 AVLELEHMGMPFSRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHAILHTLYQQNL-KADTSFFNEYFALDLLME 148 (565)
T ss_pred HHHHHHhcCcccccCCCCceeecccccccccccCCcceeEEeecCCCchHHHHHHHHHHHH-hCCCEEEeccEEEEEEee
Confidence 45899999999965311 11 111 12356677777776 679999999999999998
Q ss_pred CCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 209 GNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 209 ~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
+++|.|+...+ ..+ ++...|.|+.||+|||+++
T Consensus 149 ~g~v~Ga~~~~------~~~---g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 149 DGECRGVIAYC------LET---GEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred CCEEEEEEEEE------cCC---CcEEEEEeCeEEECCCCcc
Confidence 89999998732 111 2456899999999999975
No 284
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.47 E-value=3.6e-07 Score=90.73 Aligned_cols=99 Identities=22% Similarity=0.300 Sum_probs=66.8
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHH
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTI 184 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L 184 (352)
...+|+|||||++|+++|+.|++. |++|+|+|+.+.+||... ++++. + ....++...+
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~-g~~V~lie~~~~~gG~l~-------------~gip~-----~---~~~~~~~~~~ 196 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARK-GYDVTIFEARDKAGGLLR-------------YGIPE-----F---RLPKDIVDRE 196 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCCCcEee-------------ccCCC-----c---cCCHHHHHHH
Confidence 356999999999999999999999 999999999988876311 12211 0 0123444444
Q ss_pred HHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 185 MSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 185 ~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
.+.+. +.|++++.++.+.. . +.+.. ..+.+|.||+|||.+.
T Consensus 197 ~~~l~-~~gv~~~~~~~v~~------~---v~~~~---------------~~~~~d~vvlAtGa~~ 237 (457)
T PRK11749 197 VERLL-KLGVEIRTNTEVGR------D---ITLDE---------------LRAGYDAVFIGTGAGL 237 (457)
T ss_pred HHHHH-HcCCEEEeCCEECC------c---cCHHH---------------HHhhCCEEEEccCCCC
Confidence 55554 56899998875411 0 11111 2367899999999863
No 285
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.46 E-value=8.8e-07 Score=87.52 Aligned_cols=114 Identities=9% Similarity=0.142 Sum_probs=67.6
Q ss_pred cEEEECCcHHHHHHHHHHhcC-CCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 108 DVVVVGAGSAGLSCAYEISKN-PNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~-~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
+|||||||++|+++|..|++. ++.+|+|||+.+..+-. ..++++.....+ ....++.....+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~--------------~~~~~~~~~~~~---~~~~~~~~~~~~ 64 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFG--------------ACGLPYFVGGFF---DDPNTMIARTPE 64 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceee--------------cCCCceEecccc---CCHHHhhcCCHH
Confidence 599999999999999999986 13589999998754310 001111000000 011122222223
Q ss_pred HHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCC
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
.+. +.|++++.++.|+.+..++..+. +.+ ..++ +...+.+|++|+|||....
T Consensus 65 ~~~-~~gv~~~~~~~V~~id~~~~~v~---~~~------~~~~---~~~~~~yd~lviAtG~~~~ 116 (444)
T PRK09564 65 EFI-KSGIDVKTEHEVVKVDAKNKTIT---VKN------LKTG---SIFNDTYDKLMIATGARPI 116 (444)
T ss_pred HHH-HCCCeEEecCEEEEEECCCCEEE---EEE------CCCC---CEEEecCCEEEECCCCCCC
Confidence 333 46999999999999987665432 211 0001 1223449999999998643
No 286
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.46 E-value=2.7e-06 Score=81.68 Aligned_cols=57 Identities=23% Similarity=0.215 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 179 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 179 ~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
.....+.+.+. ..|++++++++|+++..+++.+.++.+.+| .+|.+++||+|.|+.+
T Consensus 174 ~vvkni~~~l~-~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g--------------~~i~~~~vvlA~Grsg 230 (486)
T COG2509 174 KVVKNIREYLE-SLGGEIRFNTEVEDIEIEDNEVLGVKLTKG--------------EEIEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHH-hcCcEEEeeeEEEEEEecCCceEEEEccCC--------------cEEecCEEEEccCcch
Confidence 45566666665 679999999999999999988888887653 6999999999999876
No 287
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.45 E-value=4.1e-07 Score=95.64 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=34.7
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
...|+|||+||||++||+.|++. |++|+|+|+....|++
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~-Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRS-GHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-CCeEEEEccccccccc
Confidence 56899999999999999999999 9999999997665543
No 288
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.44 E-value=3.7e-07 Score=90.38 Aligned_cols=98 Identities=24% Similarity=0.309 Sum_probs=65.0
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHH
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTI 184 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L 184 (352)
..++|+|||+|++|+++|+.|++. |++|+|+|+.+.+||... +|++.. ....++....
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~-G~~V~vie~~~~~GG~l~-------------~gip~~--------~~~~~~~~~~ 189 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKA-GHSVTVFEALHKPGGVVT-------------YGIPEF--------RLPKEIVVTE 189 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCcEee-------------ecCCCc--------cCCHHHHHHH
Confidence 457999999999999999999999 999999999888876321 222210 0112333444
Q ss_pred HHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCC
Q 039605 185 MSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHD 249 (352)
Q Consensus 185 ~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~ 249 (352)
.+.+. +.|+++++++.+. . .+.+.. ....+|.||+|||.+
T Consensus 190 ~~~l~-~~gv~~~~~~~v~------~---~v~~~~---------------~~~~yd~viiAtGa~ 229 (449)
T TIGR01316 190 IKTLK-KLGVTFRMNFLVG------K---TATLEE---------------LFSQYDAVFIGTGAG 229 (449)
T ss_pred HHHHH-hCCcEEEeCCccC------C---cCCHHH---------------HHhhCCEEEEeCCCC
Confidence 44454 5699999886331 0 011111 124579999999974
No 289
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.42 E-value=9.3e-07 Score=84.75 Aligned_cols=109 Identities=17% Similarity=0.081 Sum_probs=67.1
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHH
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIM 185 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~ 185 (352)
..+|+|||+|++|+.+|..|++. |++|+++|+.+.+||..... ++. +. ...+......
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~gg~~~~~-------------~~~-----~~---~~~~~~~~~~ 75 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACL-GYEVHVYDKLPEPGGLMLFG-------------IPE-----FR---IPIERVREGV 75 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCCceeeec-------------Ccc-----cc---cCHHHHHHHH
Confidence 45899999999999999999999 99999999998887632110 000 00 0112223344
Q ss_pred HHHHcCCCcEEEccceeEEEEE---eCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCC
Q 039605 186 SKLLARPNVKLFNAVAAEDLIV---KGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHD 249 (352)
Q Consensus 186 ~~~~~~~gv~i~~~t~v~~l~~---~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~ 249 (352)
+++.+ .|++++.++.+..... +.+........ . .+...+.+|.||+|||.+
T Consensus 76 ~~l~~-~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~d~lviAtGs~ 129 (352)
T PRK12770 76 KELEE-AGVVFHTRTKVCCGEPLHEEEGDEFVERIV---------S---LEELVKKYDAVLIATGTW 129 (352)
T ss_pred HHHHh-CCeEEecCcEEeeccccccccccccccccC---------C---HHHHHhhCCEEEEEeCCC
Confidence 55654 4999998876654322 11111000000 0 011247899999999985
No 290
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.42 E-value=8.1e-07 Score=86.57 Aligned_cols=107 Identities=15% Similarity=0.153 Sum_probs=66.6
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCC--cEEEEeccCCCCCCcceeecch-HHHHHHHcCCccccCCCeEEEechHHHHH
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNV--QVAIIEQSVSPGGASGSVVRKP-AHLFLDELGIDYDEQDNYVVIKHAALFTS 182 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~--kV~viEk~~~~GG~~~~~~~~~-~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~ 182 (352)
..+|||||||++|+.||..|++. |. +|+||++.+...-. +.+ ...++. +.... .. . ....
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~-~~~~~I~li~~e~~~~y~-----r~~l~~~~~~--~~~~~---~~-~-~~~~---- 65 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQ-GFTGELHLFSDERHLPYE-----RPPLSKSMLL--EDSPQ---LQ-Q-VLPA---- 65 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhh-CCCCCEEEeCCCCCCCCC-----CCCCCHHHHC--CCCcc---cc-c-cCCH----
Confidence 34799999999999999999987 65 79999987643210 001 011111 00000 00 0 0011
Q ss_pred HHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 183 TIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 183 ~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
....+.+++++.++.|..+..++.. +.+.+ ..++.+|++|+|||...
T Consensus 66 ----~~~~~~~i~~~~g~~V~~id~~~~~---v~~~~--------------g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 66 ----NWWQENNVHLHSGVTIKTLGRDTRE---LVLTN--------------GESWHWDQLFIATGAAA 112 (396)
T ss_pred ----HHHHHCCCEEEcCCEEEEEECCCCE---EEECC--------------CCEEEcCEEEEccCCCC
Confidence 1112468999999888888776543 22322 25799999999999865
No 291
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.42 E-value=1.1e-06 Score=79.60 Aligned_cols=134 Identities=26% Similarity=0.351 Sum_probs=87.3
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCC------CcEEEEeccCCCCCCccee---e---cch---------H---HHHH-HH-
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPN------VQVAIIEQSVSPGGASGSV---V---RKP---------A---HLFL-DE- 160 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G------~kV~viEk~~~~GG~~~~~---~---~~~---------~---~~~l-~~- 160 (352)
..|+|||||+.|..+|+.|+++ + +.++|+|+....||.++.. + ..+ + ++.| ++
T Consensus 11 k~I~IvGGGIiGvctayyLt~~-~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsdey 89 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEH-PSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDEY 89 (380)
T ss_pred eEEEEECCCceeeeeehhhhcC-CccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHhh
Confidence 4799999999999999999998 5 7899999988777652211 0 000 1 1111 11
Q ss_pred -----cCCc--------cccC--------CCeE-------------------EEechHHHHHHHHHHHHcCCCcEEEccc
Q 039605 161 -----LGID--------YDEQ--------DNYV-------------------VIKHAALFTSTIMSKLLARPNVKLFNAV 200 (352)
Q Consensus 161 -----~Gi~--------~~~~--------~~~~-------------------~~~~~~~~~~~L~~~~~~~~gv~i~~~t 200 (352)
||.+ .++. .... -..|...|.+.++.++.++.||+++++
T Consensus 90 dGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~G- 168 (380)
T KOG2852|consen 90 DGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFG- 168 (380)
T ss_pred cCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEEe-
Confidence 1110 1100 0000 023566788999999998888999999
Q ss_pred eeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCC
Q 039605 201 AAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPF 252 (352)
Q Consensus 201 ~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~ 252 (352)
+|.++..+.+|+.++..... . +..+....+.+|++.|-|...
T Consensus 169 kv~ev~dEk~r~n~v~~ae~-----~-----~ti~~~d~~~ivvsaGPWTsk 210 (380)
T KOG2852|consen 169 KVKEVSDEKHRINSVPKAEA-----E-----DTIIKADVHKIVVSAGPWTSK 210 (380)
T ss_pred eeEEeecccccccccchhhh-----c-----CceEEeeeeEEEEecCCCchh
Confidence 78888766677766543210 0 123567778999999999753
No 292
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.38 E-value=4.1e-06 Score=77.56 Aligned_cols=37 Identities=27% Similarity=0.548 Sum_probs=32.7
Q ss_pred CCccEEEECCcHHHHHHHHHHhcC---CCCcEEEEeccCC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKN---PNVQVAIIEQSVS 141 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~---~G~kV~viEk~~~ 141 (352)
.++||+|||||..|++.|+.|.++ .|++|+|+|++..
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 479999999999999999999762 3899999999864
No 293
>PLN02612 phytoene desaturase
Probab=98.35 E-value=1.4e-05 Score=81.56 Aligned_cols=40 Identities=33% Similarity=0.424 Sum_probs=36.5
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
...+|+|||+|++|++||++|+++ |++|+|+|+....||.
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~-g~~~~~~e~~~~~gG~ 131 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADA-GHKPILLEARDVLGGK 131 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCCCCCc
Confidence 457999999999999999999999 9999999998877764
No 294
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.34 E-value=4.6e-06 Score=81.34 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=31.8
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSP 142 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~ 142 (352)
||+|||||.+|+.+|+.|++. |++|+|+|+.+..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~-G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQA-GVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCcEEEEeccccc
Confidence 899999999999999999999 9999999987654
No 295
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.34 E-value=4.1e-06 Score=81.89 Aligned_cols=37 Identities=38% Similarity=0.706 Sum_probs=34.8
Q ss_pred cEEEECCcHHHHHHHHHHhcCCC--CcEEEEeccCCCCCC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPN--VQVAIIEQSVSPGGA 145 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G--~kV~viEk~~~~GG~ 145 (352)
.++|||||++||++|++|+++ + .+++|+|+.+..||-
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~-~p~~~i~lfE~~~r~GG~ 40 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKA-GPDVEVTLFEADDRVGGL 40 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHh-CCCCcEEEEecCCCCCce
Confidence 489999999999999999998 8 999999999999876
No 296
>PLN02785 Protein HOTHEAD
Probab=98.34 E-value=3.5e-06 Score=85.98 Aligned_cols=34 Identities=35% Similarity=0.537 Sum_probs=31.5
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
..||+||||+|.+|+.+|.+|++ +.+|+|||++.
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~ 87 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGG 87 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCC
Confidence 36999999999999999999998 58999999986
No 297
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.32 E-value=3.8e-06 Score=81.29 Aligned_cols=107 Identities=19% Similarity=0.271 Sum_probs=67.0
Q ss_pred ccEEEECCcHHHHHHHHHHhcC-CCCcEEEEeccCCCCCCcceeecchHH-HHHHHcCCccccCCCeEEEechHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKN-PNVQVAIIEQSVSPGGASGSVVRKPAH-LFLDELGIDYDEQDNYVVIKHAALFTSTI 184 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~-~G~kV~viEk~~~~GG~~~~~~~~~~~-~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L 184 (352)
.+|||||||+||+.+|..|.+. +..+|+||++.+..- +..+.. ..+. .+. ...++....
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~------y~~~~l~~~~~-~~~------------~~~~~~~~~ 63 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE------YNKPDLSHVFS-QGQ------------RADDLTRQS 63 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC------cCcCcCcHHHh-CCC------------CHHHhhcCC
Confidence 3899999999999999999873 257899999876321 000100 0000 000 112222111
Q ss_pred HHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 185 MSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 185 ~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
.+.+.++.|++++.+++|+.+..++..+ .+. ..++.+|.+|+|||...
T Consensus 64 ~~~~~~~~gv~~~~~~~V~~id~~~~~v---~~~---------------~~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 64 AGEFAEQFNLRLFPHTWVTDIDAEAQVV---KSQ---------------GNQWQYDKLVLATGASA 111 (377)
T ss_pred HHHHHHhCCCEEECCCEEEEEECCCCEE---EEC---------------CeEEeCCEEEECCCCCC
Confidence 2233345699999999999987755433 221 25799999999999764
No 298
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.32 E-value=7e-06 Score=79.09 Aligned_cols=40 Identities=50% Similarity=0.747 Sum_probs=37.3
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
..+||||||+|.+||.+|+.|.+. |++|+|+|.++..||-
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~ka-G~~v~ilEar~r~GGR 45 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKA-GYQVQILEARDRVGGR 45 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhc-CcEEEEEeccCCcCce
Confidence 468999999999999999999999 9999999999988865
No 299
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=98.31 E-value=2.1e-06 Score=80.46 Aligned_cols=187 Identities=23% Similarity=0.287 Sum_probs=100.7
Q ss_pred CccEEEECCcHHHHHHHHHHhcC-CCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHH
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKN-PNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTI 184 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~-~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L 184 (352)
...|.|||+||||+.+|..|.++ .+++|.|+||.+.+.| |-.+|+..+..+ .....+.+
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG-------------LvRyGVAPDHpE-------vKnvintF 79 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG-------------LVRYGVAPDHPE-------VKNVINTF 79 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc-------------eeeeccCCCCcc-------hhhHHHHH
Confidence 34799999999999999999883 4899999999999887 344555444321 12233332
Q ss_pred HHHHHcCCCcEEEcccee-EEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcccc
Q 039605 185 MSKLLARPNVKLFNAVAA-EDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKAL 263 (352)
Q Consensus 185 ~~~~~~~~gv~i~~~t~v-~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~ 263 (352)
.+..++....++-|.++ .++ .+ ++.+=..|.||+|.|..+.... ++||...-
T Consensus 80 -t~~aE~~rfsf~gNv~vG~dv----------sl---------------~eL~~~ydavvLaYGa~~dR~L-~IPGe~l~ 132 (468)
T KOG1800|consen 80 -TKTAEHERFSFFGNVKVGRDV----------SL---------------KELTDNYDAVVLAYGADGDRRL-DIPGEELS 132 (468)
T ss_pred -HHHhhccceEEEecceecccc----------cH---------------HHHhhcccEEEEEecCCCCccc-CCCCcccc
Confidence 23333556666666432 111 11 0123457899999998765322 33333200
Q ss_pred ccccccceeeccc-----cc-----ccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCCCCCCCCceee
Q 039605 264 DMNTAEDAIVKLT-----RE-----IVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNAMDGTYVG 333 (352)
Q Consensus 264 ~~~~g~~~vv~~~-----~~-----~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~~~~~~~~~~~ 333 (352)
.+-.+..++-.+. .+ ....+.+.|+-....+ ..|+...+...+.--......+++.|+..+.-+.-++|
T Consensus 133 ~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlD-vARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvg 211 (468)
T KOG1800|consen 133 GVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALD-VARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVG 211 (468)
T ss_pred cceehhhhhhhccCCCcccccCcccccceEEEEccCchhhh-hhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEe
Confidence 0000111111111 00 1222333332211111 12332222111111223567788899999999999999
Q ss_pred ecCceee
Q 039605 334 SIHPELV 340 (352)
Q Consensus 334 ~~~~~~~ 340 (352)
|++|.-|
T Consensus 212 RRgp~~~ 218 (468)
T KOG1800|consen 212 RRGPLQV 218 (468)
T ss_pred ccCccce
Confidence 9987644
No 300
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.21 E-value=7.7e-06 Score=75.07 Aligned_cols=133 Identities=23% Similarity=0.260 Sum_probs=83.2
Q ss_pred CCccEEEECCcHHHHHHHHHHhc-CCCCcEEEEeccCCCC-----CCcc----eeec--------------chHHHHHHH
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISK-NPNVQVAIIEQSVSPG-----GASG----SVVR--------------KPAHLFLDE 160 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~-~~G~kV~viEk~~~~G-----G~~~----~~~~--------------~~~~~~l~~ 160 (352)
.+||.||||||+.|++.|++|.- +|+++|.|+||....+ -++. .++. .-..+++++
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~e 126 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCDE 126 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhhh
Confidence 37999999999999999999974 5699999999976543 1110 0111 113466777
Q ss_pred cCCccccCCCeEEE----------------------------------------------------echHHHHHHHHHHH
Q 039605 161 LGIDYDEQDNYVVI----------------------------------------------------KHAALFTSTIMSKL 188 (352)
Q Consensus 161 ~Gi~~~~~~~~~~~----------------------------------------------------~~~~~~~~~L~~~~ 188 (352)
.++++...+.+... .+...+...+.+.+
T Consensus 127 ~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~edF 206 (453)
T KOG2665|consen 127 KKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGEDF 206 (453)
T ss_pred cCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHHHHH
Confidence 77776654333221 11223334445554
Q ss_pred HcCCCcEEEccceeEEEEEeCCEEEE--EEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 189 LARPNVKLFNAVAAEDLIVKGNRVGG--IVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 189 ~~~~gv~i~~~t~v~~l~~~~g~v~g--v~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
. ..|-+++++.+++.+...+..-.+ +++.+ +..++++.+.||-|+|..+
T Consensus 207 ~-~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~n------------gk~ee~r~~~~vtc~gl~s 257 (453)
T KOG2665|consen 207 D-FMGGRIYTNFRLQGIAQNKEATFSYPIVVLN------------GKGEEKRTKNVVTCAGLQS 257 (453)
T ss_pred H-HhcccccccceeccchhccCCCCCCceEEec------------CccceeEEeEEEEeccccH
Confidence 4 567888888888888765432100 11211 1347899999999999765
No 301
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.19 E-value=8.3e-06 Score=78.12 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCC
Q 039605 182 STIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 182 ~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
..+.+.+ ++.|.+|+++..|++++.|+|++.||.+.+| +++.++.||--++-|..
T Consensus 268 ~aia~~~-~~~GaeI~tka~Vq~Illd~gka~GV~L~dG--------------~ev~sk~VvSNAt~~~T 322 (561)
T KOG4254|consen 268 FAIAEGA-KRAGAEIFTKATVQSILLDSGKAVGVRLADG--------------TEVRSKIVVSNATPWDT 322 (561)
T ss_pred HHHHHHH-HhccceeeehhhhhheeccCCeEEEEEecCC--------------cEEEeeeeecCCchHHH
Confidence 3444444 4789999999999999999999999999764 68888988888887654
No 302
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=98.19 E-value=2.8e-05 Score=73.89 Aligned_cols=133 Identities=18% Similarity=0.244 Sum_probs=81.4
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCC---CCcEEEEecc--CCCCCCc------c--eeecchHHHHHHHcCCc-------
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNP---NVQVAIIEQS--VSPGGAS------G--SVVRKPAHLFLDELGID------- 164 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~---G~kV~viEk~--~~~GG~~------~--~~~~~~~~~~l~~~Gi~------- 164 (352)
..||||||||||.|++.|..|...+ .+||+|+|.+ +..++-. + .......+.+++.+|.+
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R 114 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDR 114 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhhc
Confidence 3789999999999999999998643 6799999987 3333220 0 01112233344333321
Q ss_pred -------------------cccC---CCeEEEechHHHHHHHH--HHHHcCCCcEEEccceeEEEEEe-------CCEEE
Q 039605 165 -------------------YDEQ---DNYVVIKHAALFTSTIM--SKLLARPNVKLFNAVAAEDLIVK-------GNRVG 213 (352)
Q Consensus 165 -------------------~~~~---~~~~~~~~~~~~~~~L~--~~~~~~~gv~i~~~t~v~~l~~~-------~g~v~ 213 (352)
++.. .+..++.....+...|+ ....+..++++++..++.++.+- ++-+.
T Consensus 115 ~~~~~~~~v~Ds~s~a~I~~~~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~ 194 (481)
T KOG3855|consen 115 YQKFSRMLVWDSCSAALILFDHDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWF 194 (481)
T ss_pred cccccceeeecccchhhhhhccccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcceE
Confidence 1111 01223344455555666 33344678999999998887762 23333
Q ss_pred EEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCC
Q 039605 214 GIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 214 gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
-+.+.+ ...+..|.+|-|.|..+.
T Consensus 195 ~i~l~d--------------g~~~~~~LLigAdg~Ns~ 218 (481)
T KOG3855|consen 195 HITLTD--------------GINFATDLLIGADGFNSV 218 (481)
T ss_pred EEEecc--------------Cceeeeceeeccccccch
Confidence 344432 258999999999998763
No 303
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.17 E-value=2e-06 Score=85.79 Aligned_cols=40 Identities=35% Similarity=0.551 Sum_probs=37.5
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
...+|||||||++||+||.+|.+. |.+|+|+|..+.+||-
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEARDRVGGR 53 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHc-CCceEEEeccCCcCce
Confidence 356999999999999999999999 9999999999999876
No 304
>PRK07208 hypothetical protein; Provisional
Probab=98.17 E-value=2.1e-06 Score=85.63 Aligned_cols=39 Identities=41% Similarity=0.716 Sum_probs=36.8
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
..||+|||||++||+||+.|+++ |++|+|+|+.+.+||.
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~-g~~v~v~E~~~~~GG~ 42 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKR-GYPVTVLEADPVVGGI 42 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCce
Confidence 56999999999999999999999 9999999999998875
No 305
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.16 E-value=2.3e-05 Score=77.05 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=68.5
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHH
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIM 185 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~ 185 (352)
..+|||||||.+|+.+|..|.+. +.+|+|||+.+..- + .+. +..... +.+ ...+....+.
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~-~~~ItlI~~~~~~~------~-~~~---l~~~~~-----g~~----~~~~~~~~~~ 69 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPK-KYNITVISPRNHML------F-TPL---LPQTTT-----GTL----EFRSICEPVR 69 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcC-CCeEEEEcCCCCcc------h-hhh---HHHhcc-----cCC----ChHHhHHHHH
Confidence 46899999999999999999877 89999999876421 1 111 111100 000 1122222233
Q ss_pred HHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 186 SKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 186 ~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
+.+ ...+++++.. +|+++..++..+.- ..... ....+.+..++.+|++|+|||...
T Consensus 70 ~~~-~~~~~~~i~~-~V~~Id~~~~~v~~-~~~~~------~~~~~~~g~~i~yD~LViAtGs~~ 125 (424)
T PTZ00318 70 PAL-AKLPNRYLRA-VVYDVDFEEKRVKC-GVVSK------SNNANVNTFSVPYDKLVVAHGARP 125 (424)
T ss_pred HHh-ccCCeEEEEE-EEEEEEcCCCEEEE-ecccc------cccccCCceEecCCEEEECCCccc
Confidence 333 3557887765 88888877665432 11100 000001235799999999999864
No 306
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.16 E-value=9.4e-06 Score=78.84 Aligned_cols=98 Identities=18% Similarity=0.252 Sum_probs=61.7
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC-----------cceeecch--------HHHHHHHcC-Cccc
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA-----------SGSVVRKP--------AHLFLDELG-IDYD 166 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~-----------~~~~~~~~--------~~~~l~~~G-i~~~ 166 (352)
.||+|||||++|+.+|+.|++. |++|+|+|+.+..... ++..+... ..+.++.+| +.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~-Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lgsl~~~ 81 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR-GVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLGSLIME 81 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHHhcchhee
Confidence 3899999999999999999999 9999999986654221 00000000 012222232 1111
Q ss_pred cC-----CC-eEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEE
Q 039605 167 EQ-----DN-YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLI 206 (352)
Q Consensus 167 ~~-----~~-~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~ 206 (352)
.. .. ..+......+.+.|.+.+.+.++++++ ..+|+++.
T Consensus 82 aad~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~ 126 (436)
T PRK05335 82 AADAHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP 126 (436)
T ss_pred cccccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence 11 01 112334455778888888888999998 55888886
No 307
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.14 E-value=2.4e-06 Score=85.59 Aligned_cols=38 Identities=47% Similarity=0.772 Sum_probs=36.1
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
.||||||||++||+||..|+++ |++|+|+|++..+||.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~-G~~v~vlE~~~~~GG~ 39 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR-GYRVTLLEQHAQPGGC 39 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCCCc
Confidence 4899999999999999999999 9999999999999876
No 308
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.14 E-value=3.3e-05 Score=75.12 Aligned_cols=131 Identities=19% Similarity=0.195 Sum_probs=76.1
Q ss_pred ccEEEECCcHHHHHHHHHHhcCC--CCcEEEEeccCCCCCCcceee---------------------cchHHHHHHHcCC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNP--NVQVAIIEQSVSPGGASGSVV---------------------RKPAHLFLDELGI 163 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~--G~kV~viEk~~~~GG~~~~~~---------------------~~~~~~~l~~~Gi 163 (352)
++|+|||+|++|+.+|.+|.+.+ -.++.|+|+.+..|++..+.. .....+||...+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 48999999999999999999842 234999999999887732211 1125678877632
Q ss_pred cccc------C-CCeEEEechHHHHHHHHHHHHcCC--C-cEEEccceeEEEEEeC-CEEEEEEEcccceeccCCCCCCC
Q 039605 164 DYDE------Q-DNYVVIKHAALFTSTIMSKLLARP--N-VKLFNAVAAEDLIVKG-NRVGGIVTNWALVSMNHDSQSCM 232 (352)
Q Consensus 164 ~~~~------~-~~~~~~~~~~~~~~~L~~~~~~~~--g-v~i~~~t~v~~l~~~~-g~v~gv~~~~g~~~~~~~~~~~g 232 (352)
.... . ..|....--.+|....+..+.++. . +.+ ...+++++..++ +...-+..++
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~-~~~~a~~~~~~~n~~~~~~~~~~------------- 147 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRT-IREEATSVRQDTNAGGYLVTTAD------------- 147 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeE-EeeeeecceeccCCceEEEecCC-------------
Confidence 2221 1 112222222344443344443222 1 333 344666666653 2222233322
Q ss_pred CCeEEEeCEEEEccCCCCCC
Q 039605 233 DPNVMEAKVVVSSCGHDGPF 252 (352)
Q Consensus 233 ~~~~i~A~~VIlAtG~~~~~ 252 (352)
.....||.+|+|||+..+.
T Consensus 148 -g~~~~ad~~Vlatgh~~~~ 166 (474)
T COG4529 148 -GPSEIADIIVLATGHSAPP 166 (474)
T ss_pred -CCeeeeeEEEEeccCCCCC
Confidence 3578899999999986543
No 309
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.14 E-value=5.5e-06 Score=79.01 Aligned_cols=133 Identities=17% Similarity=0.150 Sum_probs=66.9
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCccee----------------ecch-----HHHHHHHcCCc
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSV----------------VRKP-----AHLFLDELGID 164 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~----------------~~~~-----~~~~l~~~Gi~ 164 (352)
.||+|+||.||++|+.|+.|.+....+++.+|+.+...-..+.. ...| ...+|.+.|--
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 47999999999999999999997359999999877532110000 0111 23444444321
Q ss_pred cccCCCeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCC---EEEEEEEcccceeccCCCCCCCCCeEEEeCE
Q 039605 165 YDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGN---RVGGIVTNWALVSMNHDSQSCMDPNVMEAKV 241 (352)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g---~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~ 241 (352)
+.....-.......++...+..-+ ++..-.+.++.+|++|..+++ ....|.+.+ .+|+..++.|+.
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva-~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~----------~~g~~~~~~ar~ 150 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVA-EQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD----------SDGDGETYRARN 150 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHH-CCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE----------TTS-EEEEEESE
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHH-HhCCCceEECCEEEEEEEecCCCccEEEEEEee----------cCCCeeEEEeCe
Confidence 111000000012234444443333 344444788899999988643 244455521 122457999999
Q ss_pred EEEccCCC
Q 039605 242 VVSSCGHD 249 (352)
Q Consensus 242 VIlAtG~~ 249 (352)
||+|+|..
T Consensus 151 vVla~G~~ 158 (341)
T PF13434_consen 151 VVLATGGQ 158 (341)
T ss_dssp EEE----E
T ss_pred EEECcCCC
Confidence 99999943
No 310
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.10 E-value=1.4e-05 Score=76.79 Aligned_cols=106 Identities=14% Similarity=0.177 Sum_probs=65.2
Q ss_pred cEEEECCcHHHHHHHHHHhcC--CCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHH
Q 039605 108 DVVVVGAGSAGLSCAYEISKN--PNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIM 185 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~--~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~ 185 (352)
.|||||||++|+.+|.+|.++ ++.+|+|||+....- +......++. |. ....++...+.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~------~~~~~~~~~~--g~-----------~~~~~~~~~~~ 61 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP------YSGMLPGMIA--GH-----------YSLDEIRIDLR 61 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc------ccchhhHHHh--ee-----------CCHHHhcccHH
Confidence 389999999999999999642 278999999886421 1100000100 00 01122222222
Q ss_pred HHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCC
Q 039605 186 SKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 186 ~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
+ ..++.|++++.+ +|+++..++.. |.+.+ ..++++|++|+|||....
T Consensus 62 ~-~~~~~gv~~~~~-~v~~id~~~~~---V~~~~--------------g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 62 R-LARQAGARFVIA-EATGIDPDRRK---VLLAN--------------RPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred H-HHHhcCCEEEEE-EEEEEecccCE---EEECC--------------CCcccccEEEEccCCCCC
Confidence 2 233568999876 78888776553 33332 246999999999997653
No 311
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.08 E-value=4e-06 Score=80.82 Aligned_cols=38 Identities=32% Similarity=0.510 Sum_probs=35.5
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
+||+|||||++|+++|+.|++. |.+|+|||+...+||.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~-G~~V~viEk~~~iGG~ 39 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL-NKRVLVVEKRNHIGGN 39 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCCCCCc
Confidence 5999999999999999999998 9999999998887765
No 312
>PLN02268 probable polyamine oxidase
Probab=98.07 E-value=4.1e-06 Score=82.56 Aligned_cols=37 Identities=30% Similarity=0.584 Sum_probs=35.4
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
+|+|||||.+||+||+.|.+. |++|+|+|+.+.+||-
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~-g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA-SFKVTLLESRDRIGGR 38 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCce
Confidence 799999999999999999999 9999999999999875
No 313
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.06 E-value=3.8e-06 Score=82.86 Aligned_cols=37 Identities=35% Similarity=0.693 Sum_probs=34.7
Q ss_pred cEEEECCcHHHHHHHHHHhcCCC--CcEEEEeccCCCCCC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPN--VQVAIIEQSVSPGGA 145 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G--~kV~viEk~~~~GG~ 145 (352)
+|+|||||++||+||+.|++. | ++|+|+|+.+.+||-
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~-G~~~~V~vlEa~~~~GGr 40 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKK-GPDADITLLEASDRLGGK 40 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHh-CCCCCEEEEEcCCCCcce
Confidence 699999999999999999998 7 899999999999875
No 314
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=98.04 E-value=2.5e-05 Score=78.29 Aligned_cols=38 Identities=39% Similarity=0.609 Sum_probs=34.8
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSP 142 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~ 142 (352)
.+||.||||||.||+..|.+|++.+..+|+|||++...
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 47999999999999999999999778999999998653
No 315
>PLN02576 protoporphyrinogen oxidase
Probab=97.99 E-value=7.8e-06 Score=81.96 Aligned_cols=40 Identities=40% Similarity=0.649 Sum_probs=36.2
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
++||+|||||++||+||+.|+++.|++|+|+|+.+.+||.
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN 51 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence 5699999999999999999988526999999999999876
No 316
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.99 E-value=3e-05 Score=82.31 Aligned_cols=106 Identities=8% Similarity=0.086 Sum_probs=66.0
Q ss_pred cEEEECCcHHHHHHHHHHhcC---CCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHH
Q 039605 108 DVVVVGAGSAGLSCAYEISKN---PNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTI 184 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~---~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L 184 (352)
+|||||+|++|+.+|..|.+. .+++|+||++.+.+.-.... ...++. +. ...++....
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~-----L~~~~~--~~------------~~~~l~~~~ 65 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVH-----LSSYFS--HH------------TAEELSLVR 65 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCc-----chHhHc--CC------------CHHHccCCC
Confidence 799999999999999999753 25899999998765311000 000110 00 011111111
Q ss_pred HHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 185 MSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 185 ~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
. ...++.|++++.++.|+.+..+... |.+.+ ..++.+|.+|+|||..+
T Consensus 66 ~-~~~~~~gI~~~~g~~V~~Id~~~~~---V~~~~--------------G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 66 E-GFYEKHGIKVLVGERAITINRQEKV---IHSSA--------------GRTVFYDKLIMATGSYP 113 (847)
T ss_pred H-HHHHhCCCEEEcCCEEEEEeCCCcE---EEECC--------------CcEEECCEEEECCCCCc
Confidence 1 1223569999999989888765432 23322 25799999999999865
No 317
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.98 E-value=8.9e-06 Score=74.88 Aligned_cols=38 Identities=32% Similarity=0.409 Sum_probs=36.7
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
+|++|||+|.+|+.+|..|++. |.+|+||||.+.+||+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~-gk~VLIvekR~HIGGN 39 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEKRNHIGGN 39 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHc-CCEEEEEeccccCCCc
Confidence 6999999999999999999999 9999999999999988
No 318
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.96 E-value=3e-05 Score=81.97 Aligned_cols=106 Identities=16% Similarity=0.205 Sum_probs=65.9
Q ss_pred EEEECCcHHHHHHHHHHhcC--CCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 109 VVVVGAGSAGLSCAYEISKN--PNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 109 VvIIGgG~aGl~aA~~la~~--~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
|||||+|++|+.+|.+|.+. .+++|+|||+.+.++-.... ...++. |.. ...++.....+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~-----L~~~l~--g~~-----------~~~~l~~~~~~ 62 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRIL-----LSSVLQ--GEA-----------DLDDITLNSKD 62 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCccccc-----ccHHHC--CCC-----------CHHHccCCCHH
Confidence 68999999999999998764 26799999998765321000 000110 000 01111111111
Q ss_pred HHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
.+ ++.|++++.+++|+.+..++.. |.+.+ ..++.+|.+|+|||...
T Consensus 63 ~~-~~~gv~~~~g~~V~~Id~~~k~---V~~~~--------------g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 63 WY-EKHGITLYTGETVIQIDTDQKQ---VITDA--------------GRTLSYDKLILATGSYP 108 (785)
T ss_pred HH-HHCCCEEEcCCeEEEEECCCCE---EEECC--------------CcEeeCCEEEECCCCCc
Confidence 22 2569999999999998776543 33322 25799999999999764
No 319
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.93 E-value=0.00013 Score=70.75 Aligned_cols=40 Identities=38% Similarity=0.599 Sum_probs=35.8
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
...|||||||.||++||.+|.+.++.+|+|+|..+.+||-
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR 60 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR 60 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence 4579999999999999999997746789999999998875
No 320
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.93 E-value=1.1e-05 Score=80.13 Aligned_cols=39 Identities=36% Similarity=0.647 Sum_probs=35.7
Q ss_pred ccEEEECCcHHHHHHHHHHhcCC---CCcEEEEeccCCCCCC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNP---NVQVAIIEQSVSPGGA 145 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~---G~kV~viEk~~~~GG~ 145 (352)
.||+|||||++||+||+.|+++. |++|+|+|+.+.+||.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~ 44 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGK 44 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcce
Confidence 48999999999999999999863 7999999999999876
No 321
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.88 E-value=1.4e-05 Score=79.26 Aligned_cols=37 Identities=35% Similarity=0.539 Sum_probs=34.6
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
+|+|||||++||+||+.|.++ |++|+|+|+.+.+||-
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~-G~~v~vlE~~~~~GG~ 37 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADA-GHTPIVLEARDVLGGK 37 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCC
Confidence 489999999999999999999 9999999999988874
No 322
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.88 E-value=8.9e-05 Score=71.38 Aligned_cols=80 Identities=19% Similarity=0.149 Sum_probs=57.6
Q ss_pred HHHHHHHcCCccccCC--C-eEEEechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCC
Q 039605 154 AHLFLDELGIDYDEQD--N-YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQS 230 (352)
Q Consensus 154 ~~~~l~~~Gi~~~~~~--~-~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~ 230 (352)
.++|++++|+++.... . |+...+..+..+.|..++. +.||+++++++|.++ ++++ ..+.+..
T Consensus 59 ~~~fF~~~Gi~~~~e~~grvfP~S~~A~sVv~~L~~~l~-~~gV~i~~~~~V~~i--~~~~-~~v~~~~----------- 123 (376)
T TIGR03862 59 LQDWARGLGIETFVGSSGRVFPVEMKAAPLLRAWLKRLA-EQGVQFHTRHRWIGW--QGGT-LRFETPD----------- 123 (376)
T ss_pred HHHHHHHCCCceEECCCCEECCCCCCHHHHHHHHHHHHH-HCCCEEEeCCEEEEE--eCCc-EEEEECC-----------
Confidence 3578899999765432 2 3335567788888888876 689999999999998 3443 3455421
Q ss_pred CCCCeEEEeCEEEEccCCCC
Q 039605 231 CMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 231 ~g~~~~i~A~~VIlAtG~~~ 250 (352)
+...++|+.||+|||+.+
T Consensus 124 --~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 124 --GQSTIEADAVVLALGGAS 141 (376)
T ss_pred --CceEEecCEEEEcCCCcc
Confidence 124699999999999865
No 323
>PLN02568 polyamine oxidase
Probab=97.88 E-value=1.7e-05 Score=80.24 Aligned_cols=39 Identities=28% Similarity=0.578 Sum_probs=36.0
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCC-----CcEEEEeccCCCCCC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPN-----VQVAIIEQSVSPGGA 145 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G-----~kV~viEk~~~~GG~ 145 (352)
..||+|||||++||+||+.|++. | ++|+|+|++..+||.
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~-g~~~~~~~v~v~E~~~~~GGr 48 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTS-SAANDMFELTVVEGGDRIGGR 48 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhc-ccccCCceEEEEeCCCCcCCe
Confidence 46999999999999999999987 6 899999999998876
No 324
>PLN02676 polyamine oxidase
Probab=97.87 E-value=1.7e-05 Score=79.42 Aligned_cols=42 Identities=31% Similarity=0.588 Sum_probs=37.6
Q ss_pred CCCCccEEEECCcHHHHHHHHHHhcCCCC-cEEEEeccCCCCCC
Q 039605 103 THADTDVVVVGAGSAGLSCAYEISKNPNV-QVAIIEQSVSPGGA 145 (352)
Q Consensus 103 ~~~~~DVvIIGgG~aGl~aA~~la~~~G~-kV~viEk~~~~GG~ 145 (352)
....+||+|||||++||+||++|++. |. +|+|+|+...+||.
T Consensus 23 ~~~~~~v~IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~~GG~ 65 (487)
T PLN02676 23 AKPSPSVIIVGAGMSGISAAKTLSEA-GIEDILILEATDRIGGR 65 (487)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHc-CCCcEEEecCCCCCCCc
Confidence 33478999999999999999999999 98 59999999988875
No 325
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=1.7e-05 Score=77.78 Aligned_cols=37 Identities=38% Similarity=0.625 Sum_probs=35.3
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
.|+|+|||.|||+||+.|+++ |++|+|+|.++.+||-
T Consensus 2 rVai~GaG~AgL~~a~~La~~-g~~vt~~ea~~~~GGk 38 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADA-GYDVTLYEARDRLGGK 38 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhC-CCceEEEeccCccCce
Confidence 499999999999999999999 9999999999999975
No 326
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.81 E-value=1.9e-05 Score=78.48 Aligned_cols=38 Identities=32% Similarity=0.580 Sum_probs=34.1
Q ss_pred cEEEECCcHHHHHHHHHHhcCC-----CCcEEEEeccCCCCCC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNP-----NVQVAIIEQSVSPGGA 145 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~-----G~kV~viEk~~~~GG~ 145 (352)
+|+|||||++||+||+.|++.+ |.+|+|+|+.+.+||-
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr 45 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGK 45 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccce
Confidence 6999999999999999999851 4899999999999876
No 327
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.74 E-value=0.00016 Score=73.05 Aligned_cols=65 Identities=20% Similarity=0.285 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCC
Q 039605 177 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGP 251 (352)
Q Consensus 177 ~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~ 251 (352)
...+...+.+.+. +.|++++++++|+++..++++++++.+.+ ..+ ++..+|+|+.||+|+|.|+.
T Consensus 127 p~~l~~al~~~A~-~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~------~~~---g~~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 127 PFRLVAANVLDAQ-EHGARIFTYTKVTGLIREGGRVTGVKVED------HKT---GEEERIEAQVVINAAGIWAG 191 (516)
T ss_pred HHHHHHHHHHHHH-HcCCEEEcCcEEEEEEEECCEEEEEEEEE------cCC---CcEEEEEcCEEEECCCcchH
Confidence 3455566666665 67999999999999999888888887742 111 13458999999999999874
No 328
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.74 E-value=0.00023 Score=67.26 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCC
Q 039605 178 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPF 252 (352)
Q Consensus 178 ~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~ 252 (352)
..+...+.+.+. +.|++++.+++|+++..+++++.+|.+.+ .+++||.||+|+|.+...
T Consensus 137 ~~l~~~l~~~~~-~~g~~~~~~~~v~~i~~~~~~~~~v~~~~---------------g~~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 137 RALLKALEKALE-KLGVEIIEHTEVQHIEIRGEKVTAIVTPS---------------GDVQADQVVLAAGAWAGE 195 (337)
T ss_pred HHHHHHHHHHHH-HcCCEEEccceEEEEEeeCCEEEEEEcCC---------------CEEECCEEEEcCChhhhh
Confidence 456667776665 56999999999999998888887777643 379999999999998754
No 329
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.69 E-value=0.00028 Score=68.26 Aligned_cols=114 Identities=18% Similarity=0.279 Sum_probs=71.1
Q ss_pred ccEEEECCcHHHHHHHHHHhcCC-CCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNP-NVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIM 185 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~-G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~ 185 (352)
..|||||||.+|+.+|..|.+.+ +.+|++||++++.- + ..+|.+.-. +. .+..+..-.+.
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl------~----~plL~eva~-----g~----l~~~~i~~p~~ 64 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL------F----TPLLYEVAT-----GT----LSESEIAIPLR 64 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc------c----chhhhhhhc-----CC----CChhheeccHH
Confidence 37999999999999999999972 48999999987431 1 111111000 00 01112222223
Q ss_pred HHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCC-CCCCCC
Q 039605 186 SKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGP-FGATGV 257 (352)
Q Consensus 186 ~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~-~~~~g~ 257 (352)
+-+....+++++.+ +|++|..++.+|. +.+ ...|..|.+|+|.|+... ++.+|+
T Consensus 65 ~~~~~~~~v~~~~~-~V~~ID~~~k~V~---~~~--------------~~~i~YD~LVvalGs~~~~fgi~G~ 119 (405)
T COG1252 65 ALLRKSGNVQFVQG-EVTDIDRDAKKVT---LAD--------------LGEISYDYLVVALGSETNYFGIPGA 119 (405)
T ss_pred HHhcccCceEEEEE-EEEEEcccCCEEE---eCC--------------CccccccEEEEecCCcCCcCCCCCH
Confidence 33332445888888 7999988877653 321 257999999999997653 334443
No 330
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.68 E-value=7.3e-05 Score=71.08 Aligned_cols=163 Identities=15% Similarity=0.170 Sum_probs=100.4
Q ss_pred ccEEEECCcHHHHHHHHHHhcCC---CCcEE-EEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHH-H
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNP---NVQVA-IIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALF-T 181 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~---G~kV~-viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~-~ 181 (352)
-.|-|||.|..|...|+.|.+.. |.+|. |+|..... .+ -..++ .
T Consensus 348 ~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm------------~k-------------------iLPeyls 396 (659)
T KOG1346|consen 348 QSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNM------------EK-------------------ILPEYLS 396 (659)
T ss_pred ceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCCh------------hh-------------------hhHHHHH
Confidence 46899999999999999998742 33332 22221100 00 01222 2
Q ss_pred HHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcc
Q 039605 182 STIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMK 261 (352)
Q Consensus 182 ~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~ 261 (352)
++-.+++. +.||.++.+..|..+....+.+. +.+++| .++..|+||+|+|-.+... +.+..
T Consensus 397 ~wt~ekir-~~GV~V~pna~v~sv~~~~~nl~-lkL~dG--------------~~l~tD~vVvavG~ePN~e---la~~s 457 (659)
T KOG1346|consen 397 QWTIEKIR-KGGVDVRPNAKVESVRKCCKNLV-LKLSDG--------------SELRTDLVVVAVGEEPNSE---LAEAS 457 (659)
T ss_pred HHHHHHHH-hcCceeccchhhhhhhhhccceE-EEecCC--------------CeeeeeeEEEEecCCCchh---hcccc
Confidence 34455555 67999999998888877655442 455442 6899999999999655432 23333
Q ss_pred cccccc--ccceeecccccccCceeEecchhhhhcCC--CCCCcchhhhhhchHHHHHHHHHH
Q 039605 262 ALDMNT--AEDAIVKLTREIVPGMIVAGMEVAEIDGA--PRMGPTFGAMMISGQKAAHLALKS 320 (352)
Q Consensus 262 ~~~~~~--g~~~vv~~~~~~~pg~~~aG~~~~~~~g~--~r~g~~~~~~~~sG~~aA~~i~~~ 320 (352)
++..++ |... +..--..-..+|++||++...++. .|-..-+..++.||+.|.+...-.
T Consensus 458 gLeiD~~lGGfr-vnaeL~ar~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgA 519 (659)
T KOG1346|consen 458 GLEIDEKLGGFR-VNAELKARENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGA 519 (659)
T ss_pred cceeecccCcEE-eeheeecccceeeecchhhhhcccccceeccccccceeeceecccccccc
Confidence 343332 2211 222223556799999999887742 333455667788998888765543
No 331
>PLN02529 lysine-specific histone demethylase 1
Probab=97.65 E-value=5.8e-05 Score=78.52 Aligned_cols=40 Identities=35% Similarity=0.629 Sum_probs=36.5
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
...||+|||||++|++||+.|+++ |++|+|+|+.+.+||.
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSF-GFKVVVLEGRNRPGGR 198 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHc-CCcEEEEecCccCcCc
Confidence 357999999999999999999999 9999999998877764
No 332
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.65 E-value=5.4e-05 Score=75.59 Aligned_cols=37 Identities=43% Similarity=0.560 Sum_probs=34.4
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
+|+|||||++|+++|+.|++. |++|+|+|+.+.+||.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~-G~~v~v~E~~~~~GG~ 37 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDA-GHEVDIYESRSFIGGK 37 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCCCCce
Confidence 489999999999999999999 9999999999888864
No 333
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.64 E-value=0.0013 Score=64.54 Aligned_cols=39 Identities=31% Similarity=0.577 Sum_probs=34.4
Q ss_pred ccEEEECCcHHHHHHHHHHhcC---CCCcEEEEeccCCCCCC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKN---PNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~---~G~kV~viEk~~~~GG~ 145 (352)
.++=|||+|+|+|+||..|-+. +|.+|.|+|+.+..||.
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGs 44 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGS 44 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCc
Confidence 3677999999999999999884 47899999999988876
No 334
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.61 E-value=6.9e-05 Score=78.47 Aligned_cols=39 Identities=41% Similarity=0.654 Sum_probs=36.4
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
..+|+|||||++|++||+.|++. |++|+|+|+...+||.
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~-g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSM-GFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeccccCCCc
Confidence 57899999999999999999999 9999999999888765
No 335
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=97.61 E-value=0.00027 Score=69.43 Aligned_cols=56 Identities=20% Similarity=0.344 Sum_probs=42.8
Q ss_pred ccccCceeEecchhhh-hcCCCCCCcchh-hhhhchHHHHHHHHHHcCCCCCCCCcee
Q 039605 277 REIVPGMIVAGMEVAE-IDGAPRMGPTFG-AMMISGQKAAHLALKSLGQPNAMDGTYV 332 (352)
Q Consensus 277 ~~~~pg~~~aG~~~~~-~~g~~r~g~~~~-~~~~sG~~aA~~i~~~l~~~~~~~~~~~ 332 (352)
.+++||+|++|-+... +.|.+|.|.... ..+..|+.+|..|.+.+++.+......+
T Consensus 424 d~vvpGL~a~GEaac~svHGANRLgaNSLLdlvvfgraca~~ia~~~~pg~~~~~~~~ 481 (642)
T KOG2403|consen 424 DQVVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAEELRPGDKVPPLAS 481 (642)
T ss_pred cccccceeehhHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 3578999999987643 678889877665 4567899999999999887776655443
No 336
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.53 E-value=0.00082 Score=64.41 Aligned_cols=157 Identities=16% Similarity=0.124 Sum_probs=91.0
Q ss_pred ccEEEECCcHHHHHHHHHHhcC-------------CCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEE
Q 039605 107 TDVVVVGAGSAGLSCAYEISKN-------------PNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVV 173 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~-------------~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~ 173 (352)
--+|||||||.|...|..|+.. .-.+|++||..+.+ ..++
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i------------L~mF--------------- 271 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI------------LNMF--------------- 271 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH------------HHHH---------------
Confidence 3589999999999999999842 14688888887632 0111
Q ss_pred EechHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCC
Q 039605 174 IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFG 253 (352)
Q Consensus 174 ~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~ 253 (352)
...+... .+....+.++++..++.|.++..+ .+ -+.+. +|+..+|..-.+|-|||....+.
T Consensus 272 ---dkrl~~y-ae~~f~~~~I~~~~~t~Vk~V~~~--~I-~~~~~------------~g~~~~iPYG~lVWatG~~~rp~ 332 (491)
T KOG2495|consen 272 ---DKRLVEY-AENQFVRDGIDLDTGTMVKKVTEK--TI-HAKTK------------DGEIEEIPYGLLVWATGNGPRPV 332 (491)
T ss_pred ---HHHHHHH-HHHHhhhccceeecccEEEeecCc--EE-EEEcC------------CCceeeecceEEEecCCCCCchh
Confidence 1112222 222334679999999888776432 12 12221 23567888999999999654332
Q ss_pred CCC----CCCccccccccccceeeccccc-ccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHH
Q 039605 254 ATG----VRGMKALDMNTAEDAIVKLTRE-IVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLAL 318 (352)
Q Consensus 254 ~~g----~~g~~~~~~~~g~~~vv~~~~~-~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~ 318 (352)
... +++.. +-...+.++++- -.+++|+.|||+.+. .+-++.=-|-.+|.-.|...-
T Consensus 333 ~k~lm~~i~e~~-----rr~L~vDE~LrV~G~~nvfAiGDca~~~----~~~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 333 IKDLMKQIDEQG-----RRGLAVDEWLRVKGVKNVFAIGDCADQR----GLKPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred hhhHhhcCCccC-----ceeeeeeceeeccCcCceEEeccccccc----cCccHHHHHHHHHHHHHHHHH
Confidence 211 11111 112234455553 567899999999442 332333223445666665443
No 337
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.51 E-value=0.00066 Score=65.71 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCC
Q 039605 178 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPF 252 (352)
Q Consensus 178 ~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~ 252 (352)
..+...|.+.+. + |++++++++|.++..+++++ .+.+.+ ...++|+.||+|+|.|...
T Consensus 135 ~~~~~~l~~~~~-~-G~~i~~~~~V~~i~~~~~~~-~v~t~~--------------g~~~~a~~vV~a~G~~~~~ 192 (381)
T TIGR03197 135 PQLCRALLAHAG-I-RLTLHFNTEITSLERDGEGW-QLLDAN--------------GEVIAASVVVLANGAQAGQ 192 (381)
T ss_pred HHHHHHHHhccC-C-CcEEEeCCEEEEEEEcCCeE-EEEeCC--------------CCEEEcCEEEEcCCccccc
Confidence 345566665554 5 99999999999998876653 455533 2458999999999998743
No 338
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00035 Score=64.73 Aligned_cols=97 Identities=21% Similarity=0.308 Sum_probs=61.2
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC-----------cceeecch--------HHHHHHHcCCcc--
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA-----------SGSVVRKP--------AHLFLDELGIDY-- 165 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~-----------~~~~~~~~--------~~~~l~~~Gi~~-- 165 (352)
..|.|||||.||..||++++++ |.+|.|.|-.+.-+.. |...++.. .+..++.+|--.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~-Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~EMR~lgSlii~ 82 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKR-GVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKAEMRLLGSLIIE 82 (439)
T ss_pred CceEEEcccccccHHHHHHHHc-CCcEEEEEcccccCCCcccccchhhheeccccccchhhhhhHHHHHHHHHhhhHHhh
Confidence 3688999999999999999999 9999999987643321 11222111 122333333211
Q ss_pred -cc----CCCeEEEechHHHHHHHHHHHHcCCCcEEEccceeEEE
Q 039605 166 -DE----QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDL 205 (352)
Q Consensus 166 -~~----~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~~t~v~~l 205 (352)
.. ...-.+..+...+.+.+-+++..++.|+++.. +|+++
T Consensus 83 ~Ad~~~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vire-Evt~i 126 (439)
T COG1206 83 AADKHRVPAGGALAVDRDGFSQAVTEKLENHPLIEVIRE-EVTEI 126 (439)
T ss_pred hhhhccCCCCceeeecHhHHHHHHHHHHhcCCCEEEEcc-ccccC
Confidence 00 11223344566777888888888888888876 44444
No 339
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00014 Score=73.68 Aligned_cols=60 Identities=22% Similarity=0.396 Sum_probs=45.1
Q ss_pred HHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 183 TIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 183 ~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
.++..+.+++|+++++++.+..|+.+.++.+++.+..+ ..+. ....+.++.||+|+|...
T Consensus 207 a~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~------~~~~--~~~~~a~~~viL~AGai~ 266 (542)
T COG2303 207 AYLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIG------DGGT--IETAVAAREVVLAAGAIN 266 (542)
T ss_pred hcchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeC------CCCc--eEEEecCceEEEeccccC
Confidence 34445566889999999999999999999999987532 1100 134567789999999875
No 340
>PLN02487 zeta-carotene desaturase
Probab=97.42 E-value=0.00017 Score=73.22 Aligned_cols=38 Identities=37% Similarity=0.513 Sum_probs=35.4
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
.+|+|||+|++|+++|+.|++. |++|+|+|+.+..||.
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~-g~~v~i~E~~~~~gG~ 113 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRPFIGGK 113 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCeeEEEecCCCCCCc
Confidence 5899999999999999999999 9999999999888763
No 341
>PLN03000 amine oxidase
Probab=97.31 E-value=0.00028 Score=74.22 Aligned_cols=40 Identities=35% Similarity=0.664 Sum_probs=37.3
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
...+|+|||||++|+.+|+.|.+. |++|+|+|+...+||.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~-G~~V~VlE~~~riGGR 222 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRF-GFKVTVLEGRKRPGGR 222 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC-CCcEEEEEccCcCCCC
Confidence 358999999999999999999999 9999999999998876
No 342
>PLN02976 amine oxidase
Probab=97.22 E-value=0.0004 Score=75.95 Aligned_cols=40 Identities=33% Similarity=0.617 Sum_probs=36.8
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
..+||+|||+|++|+.+|+.|.+. |++|+|||+...+||.
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~-G~~V~VlEa~~~vGGr 731 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQ-GFSVTVLEARSRIGGR 731 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHC-CCcEEEEeeccCCCCc
Confidence 457999999999999999999999 9999999998888775
No 343
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.21 E-value=0.00035 Score=65.24 Aligned_cols=38 Identities=32% Similarity=0.587 Sum_probs=34.7
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
..+|.|||+|.+||+||+.|+++ .+|+|+|.+...||-
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r--hdVTLfEA~~rlGGh 45 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR--HDVTLFEADRRLGGH 45 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc--cceEEEeccccccCc
Confidence 45899999999999999999986 899999999998876
No 344
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.15 E-value=0.00046 Score=66.07 Aligned_cols=39 Identities=33% Similarity=0.543 Sum_probs=34.4
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCc--EEEEeccCCCCCC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQ--VAIIEQSVSPGGA 145 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~k--V~viEk~~~~GG~ 145 (352)
..+|+|||||++||++|++|+++ +-+ ++|+|+.+..||.
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~-~p~~~i~l~Ea~~RvGGw 51 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARL-GPDVTITLFEASPRVGGW 51 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhc-CCCceEEEEecCCcccce
Confidence 45899999999999999999997 554 5669999999987
No 345
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.00 E-value=0.0069 Score=57.87 Aligned_cols=130 Identities=15% Similarity=0.191 Sum_probs=65.6
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCC--CcEEEEeccCCCCCC--cc---eeecchHHHHHHHcCCc-------cccCCCe
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPN--VQVAIIEQSVSPGGA--SG---SVVRKPAHLFLDELGID-------YDEQDNY 171 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G--~kV~viEk~~~~GG~--~~---~~~~~~~~~~l~~~Gi~-------~~~~~~~ 171 (352)
...|+|||||.++...+..|.+. + .+|.+|-|+...--. .. ..+.....+++..+.-. -.+.-.+
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~-~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny 268 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRR-GPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNY 268 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH--TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTS
T ss_pred CCeEEEECCcHhHHHHHHHHHhC-CCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcC
Confidence 56899999999999999999987 5 589999987532111 00 11111111111110000 0000011
Q ss_pred EEEechHHHH----HHHHH-HHHcCCCcEEEccceeEEEEEeC-CEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEc
Q 039605 172 VVIKHAALFT----STIMS-KLLARPNVKLFNAVAAEDLIVKG-NRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSS 245 (352)
Q Consensus 172 ~~~~~~~~~~----~~L~~-~~~~~~gv~i~~~t~v~~l~~~~-g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlA 245 (352)
..+ ..++. +.+++ ++..+..+.++.+++++++...+ +++. +.+.+ .. .++..++.+|.||+|
T Consensus 269 ~~i--~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~-l~~~~------~~---~~~~~~~~~D~VilA 336 (341)
T PF13434_consen 269 GGI--DPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVR-LTLRH------RQ---TGEEETLEVDAVILA 336 (341)
T ss_dssp SEB---HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEE-EEEEE------TT---T--EEEEEESEEEE-
T ss_pred CCC--CHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEE-EEEEE------CC---CCCeEEEecCEEEEc
Confidence 111 12333 33332 23345568999999999999887 4543 44432 11 124578999999999
Q ss_pred cCC
Q 039605 246 CGH 248 (352)
Q Consensus 246 tG~ 248 (352)
||.
T Consensus 337 TGy 339 (341)
T PF13434_consen 337 TGY 339 (341)
T ss_dssp --E
T ss_pred CCc
Confidence 994
No 346
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.88 E-value=0.0071 Score=64.50 Aligned_cols=107 Identities=10% Similarity=-0.017 Sum_probs=64.3
Q ss_pred CCCcEEEccceeEEEEEe-CCEEEEEEEcccc-------eeccC-C--C------CCCCCCeEEEeCEEEEccCCCCCCC
Q 039605 191 RPNVKLFNAVAAEDLIVK-GNRVGGIVTNWAL-------VSMNH-D--S------QSCMDPNVMEAKVVVSSCGHDGPFG 253 (352)
Q Consensus 191 ~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~g~-------~~~~~-~--~------~~~g~~~~i~A~~VIlAtG~~~~~~ 253 (352)
+.||+|.++....+++.+ +|++.++++..-. ..+.. . . ...++..+|.||.||+|.|......
T Consensus 652 eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~ 731 (1028)
T PRK06567 652 ALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQ 731 (1028)
T ss_pred HcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccc
Confidence 679999999999999886 4889988875311 00000 0 0 0112457899999999999643321
Q ss_pred CCCCCCccccccccccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCCCCCC
Q 039605 254 ATGVRGMKALDMNTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNAM 327 (352)
Q Consensus 254 ~~g~~g~~~~~~~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~~~~~ 327 (352)
. . .. . .. .-...+++|+. ++--|+.+|+.++..|-+||......
T Consensus 732 ~--------~--~~-~---~s-~~~d~~~~f~G---------------tvv~A~as~k~~~~~i~~~l~~~~~~ 775 (1028)
T PRK06567 732 F--------D--ED-K---YS-YFGDCNPKYSG---------------SVVKALASSKEGYDAINKKLINNNPS 775 (1028)
T ss_pred c--------c--cc-c---cc-cccCCCCcccc---------------HHHHHHHHHHhHHHHHHHHHhhCCCC
Confidence 1 0 00 0 00 00122333322 23345889999999999999665444
No 347
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.85 E-value=0.0042 Score=60.44 Aligned_cols=103 Identities=11% Similarity=0.261 Sum_probs=64.0
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCC--cEEEEeccCCCCCCcceeecchHHHHHHHcCCccccC--CCeEEEechHHHH
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNV--QVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQ--DNYVVIKHAALFT 181 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~--kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~--~~~~~~~~~~~~~ 181 (352)
...++|||+|++|..|+..+.+. |. +.+++-+... +++++. ..+... ....+.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~-g~~~ri~l~~~~~~---------------------~pydr~~Ls~~~~~-~~~~~a 130 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQV-GFTERIALVKREYL---------------------LPYDRARLSKFLLT-VGEGLA 130 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhh-CCCcceEEEecccc---------------------Ccccchhcccceee-cccccc
Confidence 34699999999999999999987 43 4555554321 111110 000000 001111
Q ss_pred HHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCC
Q 039605 182 STIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHD 249 (352)
Q Consensus 182 ~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~ 249 (352)
.. .....++.++++++++.|+.+...+.. +.+.+ .++++.+.+|+|||..
T Consensus 131 ~r-~~e~Yke~gIe~~~~t~v~~~D~~~K~---l~~~~--------------Ge~~kys~LilATGs~ 180 (478)
T KOG1336|consen 131 KR-TPEFYKEKGIELILGTSVVKADLASKT---LVLGN--------------GETLKYSKLIIATGSS 180 (478)
T ss_pred cc-ChhhHhhcCceEEEcceeEEeeccccE---EEeCC--------------CceeecceEEEeecCc
Confidence 11 111223679999999999999887654 33433 3789999999999983
No 348
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=96.76 E-value=0.013 Score=54.43 Aligned_cols=36 Identities=31% Similarity=0.447 Sum_probs=30.5
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCC-CcEEEEeccC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPN-VQVAIIEQSV 140 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G-~kV~viEk~~ 140 (352)
.++.|+|||||.+|+..|..+.++-| -+|.|||...
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 48899999999999999999988423 4799999754
No 349
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.62 E-value=0.028 Score=53.95 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=33.5
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSP 142 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~ 142 (352)
..+|+|.||-||.-|+.|+.|.+..+.+++.+||.+..
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 36899999999999999999998746899999998754
No 350
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.57 E-value=0.0033 Score=61.75 Aligned_cols=44 Identities=25% Similarity=0.362 Sum_probs=34.5
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCccee
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSV 149 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~ 149 (352)
.+|||||+|.|..-+..|..|++. |+||+.+|+++.-||.++..
T Consensus 3 ~~yDviI~GTGl~esila~als~~-GkkVLhiD~n~yYGg~~asl 46 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRS-GKKVLHIDRNDYYGGEWASL 46 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSSCGGG-EE
T ss_pred ccceEEEECCCcHHHHHHHHHHhc-CCEEEecCCCCCcCCchhcc
Confidence 379999999999999999999999 99999999999999875443
No 351
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.33 E-value=0.022 Score=56.64 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=30.9
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.-.|+|||+|.+|+-.|..|++. +.+|+++.+..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~-a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKV-AKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHh-CCeEEEEEeec
Confidence 34799999999999999999998 99999999864
No 352
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.22 E-value=0.015 Score=58.22 Aligned_cols=32 Identities=25% Similarity=0.460 Sum_probs=29.9
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.|+|||+|.+|+.+|..|+++ |++|+++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~-G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLEL-GARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 699999999999999999999 99999999764
No 353
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.83 E-value=0.012 Score=58.59 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=30.9
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSP 142 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~ 142 (352)
.|+|||.|++|+++|+.|.+. |++|++.|+....
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~-G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ-GWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC-CCEEEEECCCCch
Confidence 489999999999999999999 9999999987643
No 354
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.029 Score=53.13 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=37.9
Q ss_pred CCCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 104 HADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 104 ~~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
...|||+|+|-|..=+..+..|+.. |.+|+.||+++.-|+.
T Consensus 4 ~~~yDvii~GTgl~esils~~Ls~~-~k~VlhiD~Nd~YG~~ 44 (434)
T COG5044 4 ETLYDVIILGTGLRESILSAALSWD-GKNVLHIDKNDYYGST 44 (434)
T ss_pred cccccEEEecccHHHHHHHHHhhhc-CceEEEEeCCCccCcc
Confidence 3479999999999999999999999 9999999999998876
No 355
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.47 E-value=0.01 Score=53.63 Aligned_cols=33 Identities=36% Similarity=0.680 Sum_probs=28.5
Q ss_pred EEEECCcHHHHHHHHHHhcC-CCCcEEEEeccCC
Q 039605 109 VVVVGAGSAGLSCAYEISKN-PNVQVAIIEQSVS 141 (352)
Q Consensus 109 VvIIGgG~aGl~aA~~la~~-~G~kV~viEk~~~ 141 (352)
.+|||||+||.+||-+|+.. |...+++|-..+.
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 68999999999999999983 4789999987754
No 356
>PRK06370 mercuric reductase; Validated
Probab=95.44 E-value=0.023 Score=56.57 Aligned_cols=60 Identities=23% Similarity=0.297 Sum_probs=43.4
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCcccc
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDE 167 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~ 167 (352)
-.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+......-......+.+++.|+++..
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~ 231 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRF-GSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRL 231 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEe
Confidence 4799999999999999999999 99999999987654321111112234556677877653
No 357
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=95.24 E-value=0.03 Score=55.62 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=43.4
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCcccc
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDE 167 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~ 167 (352)
-.++|||+|..|+.+|..|++. |.+|+|||+.+.+......-+.....+.+++.|+.+..
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~ 235 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAAL-GVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRH 235 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 4799999999999999999999 99999999987654321111112234556677776643
No 358
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=94.88 E-value=0.024 Score=54.66 Aligned_cols=29 Identities=38% Similarity=0.581 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCCCcEEEEeccCCCCCC
Q 039605 116 SAGLSCAYEISKNPNVQVAIIEQSVSPGGA 145 (352)
Q Consensus 116 ~aGl~aA~~la~~~G~kV~viEk~~~~GG~ 145 (352)
++||+||+.|+++ |++|+|+|+.+.+||.
T Consensus 1 iaGL~aA~~L~~~-G~~v~vlEa~~r~GGr 29 (450)
T PF01593_consen 1 IAGLAAAYYLAKA-GYDVTVLEASDRVGGR 29 (450)
T ss_dssp HHHHHHHHHHHHT-TTEEEEEESSSSSBTT
T ss_pred ChHHHHHHHHHhC-CCCEEEEEcCCCCCcc
Confidence 5899999999999 9999999999999986
No 359
>PLN02507 glutathione reductase
Probab=94.83 E-value=0.045 Score=55.11 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=43.5
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQ 168 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~ 168 (352)
-.|+|||+|..|+..|..+++. |.+|+|+++.+.+-.....-......+.+++.|+.+...
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~ 264 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGM-GATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPR 264 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeC
Confidence 3799999999999999999999 999999999865432111111122335677778876543
No 360
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=94.79 E-value=0.047 Score=54.09 Aligned_cols=60 Identities=17% Similarity=0.118 Sum_probs=42.8
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCcccc
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDE 167 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~ 167 (352)
-.++|||+|..|+.+|..+++. |.+|+++++.+.+......-......+.+++.|+.+..
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~ 226 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGL-GVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHP 226 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEe
Confidence 3799999999999999999999 99999999987543221111112234556677877654
No 361
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.75 E-value=0.051 Score=53.72 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=43.5
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQ 168 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~ 168 (352)
.++|||+|..|+..|..|++. |.+|+|||+++.........+.....+.+++.|+++...
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~ 219 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANF-GSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILN 219 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeC
Confidence 799999999999999999999 999999999765432211111122345677778876543
No 362
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=94.67 E-value=0.054 Score=53.68 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=42.1
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCcccc
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDE 167 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~ 167 (352)
.++|||||..|+..|..+++. |.+|+|||+.+.+-.....-+.....+.|++.|+.+..
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~L-G~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~ 233 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAAL-GSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILL 233 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEc
Confidence 699999999999999999999 99999999998764321111222233455555555443
No 363
>PRK06116 glutathione reductase; Validated
Probab=94.60 E-value=0.055 Score=53.58 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=42.9
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCcccc
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDE 167 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~ 167 (352)
-.|+|||+|..|+.+|..|++. |.+|+++++++.+......-......+.+++.|+.+..
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~ 227 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGL-GSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHT 227 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEEC
Confidence 4799999999999999999999 99999999876543211111112234556777877654
No 364
>PLN02546 glutathione reductase
Probab=94.56 E-value=0.053 Score=55.30 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=43.9
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQ 168 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~ 168 (352)
-+|+|||+|..|+..|..|++. |.+|+|+|+.+.+.............+.|++.|+.+...
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~-g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~ 313 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGL-KSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTE 313 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhc-CCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeC
Confidence 3799999999999999999999 999999998875432211111222345677788876543
No 365
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=94.55 E-value=0.21 Score=51.48 Aligned_cols=108 Identities=13% Similarity=0.149 Sum_probs=65.6
Q ss_pred ccEEEECCcHHHHHHHHHHhcCC--CCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNP--NVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTI 184 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~--G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L 184 (352)
..++|||-|++|..+...+.+.. -+.++++-..+.+.-.... +.+. +.--....+....
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~---------Ls~v---------l~~~~~~edi~l~- 64 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRIL---------LSSV---------LAGEKTAEDISLN- 64 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcccccee---------eccc---------cCCCccHHHHhcc-
Confidence 36999999999999999998721 4678888665543211000 0000 0000001111111
Q ss_pred HHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 185 MSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 185 ~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
......+.|++++.+.+++.+..++..| +... ..++..|.+|+|||..+
T Consensus 65 ~~dwy~~~~i~L~~~~~v~~idr~~k~V---~t~~--------------g~~~~YDkLilATGS~p 113 (793)
T COG1251 65 RNDWYEENGITLYTGEKVIQIDRANKVV---TTDA--------------GRTVSYDKLIIATGSYP 113 (793)
T ss_pred chhhHHHcCcEEEcCCeeEEeccCcceE---EccC--------------CcEeecceeEEecCccc
Confidence 1112236799999999999998876533 2322 36899999999999765
No 366
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=94.23 E-value=0.092 Score=49.98 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=33.4
Q ss_pred cEEEECCcHHHHHHHHHHhcCC---CCcEEEEeccCCCCCC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNP---NVQVAIIEQSVSPGGA 145 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~---G~kV~viEk~~~~GG~ 145 (352)
.+-|||+|.|||++|..|-+.+ |.++.++|..+..||.
T Consensus 24 saY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGS 64 (587)
T COG4716 24 SAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGS 64 (587)
T ss_pred eeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCC
Confidence 5779999999999999998742 7899999999888876
No 367
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.07 E-value=0.077 Score=52.99 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=32.7
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPG 143 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~G 143 (352)
-.++|||+|..|+..|..+++. |.+|+|||+.+.+.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~il 210 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRL-GSEVDVVEMFDQVI 210 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCCEEEEecCCCCC
Confidence 3799999999999999999999 99999999987553
No 368
>PTZ00188 adrenodoxin reductase; Provisional
Probab=94.07 E-value=3.4 Score=41.40 Aligned_cols=118 Identities=10% Similarity=0.056 Sum_probs=68.6
Q ss_pred CCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCccccccccccce
Q 039605 192 PNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDMNTAEDA 271 (352)
Q Consensus 192 ~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~~~g~~~ 271 (352)
..+.+.+.....++..+++++.++.+..+...- .....+++.++|.++.||-|.|..+.+ .+|+|-...+....+..
T Consensus 324 r~i~l~F~~sP~ei~~~~~~v~~v~~~~n~l~~-~~~~~tg~~~~~~~~lV~rsiGY~g~p-~~g~pFd~~~~n~~grv- 400 (506)
T PTZ00188 324 KIIEFIFYFEIRQIRPIDGAMKNVELELNKNVP-MSFSSFKENKVLVTPLVIFATGFKKSN-FAENLYNQSVQMFKEDI- 400 (506)
T ss_pred eEEEEEccCCceEEECCCCcEeEEEEEEeeccc-CccCCCCeeEEEEcCEEEEcccccCCC-CCCCCccccCCCCCCcc-
Confidence 346778888888888645788888875421100 000113456789999999999976543 33433211111111110
Q ss_pred eecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCC
Q 039605 272 IVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 323 (352)
Q Consensus 272 vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~ 323 (352)
.. -.||+|++|..-.+..| . .|.-+.+....++.|++.+..
T Consensus 401 -~~----~~~g~Y~~GWiKrGP~G-----v-Igtn~~da~~t~~~v~~d~~~ 441 (506)
T PTZ00188 401 -GQ----HKFAIFKAGWFDKGPKG-----N-IASQILNSKNSTHLVLNFLQK 441 (506)
T ss_pred -cC----CCCCcEEeeecCcCCCc-----e-eccCcccHHHHHHHHHHHHhh
Confidence 01 26999999987644322 1 222245568888888888765
No 369
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=93.88 E-value=0.17 Score=49.70 Aligned_cols=100 Identities=11% Similarity=0.098 Sum_probs=54.0
Q ss_pred HHHHHHhcC-CCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHHHHHcCCCcEEEc
Q 039605 120 SCAYEISKN-PNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFN 198 (352)
Q Consensus 120 ~aA~~la~~-~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~~~~~~~gv~i~~ 198 (352)
+||..|.+. +..+|+|||+.+...- ...+++.-..+. .....+......+.+..+.|++++.
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~--------------~~~~l~~~~~g~---~~~~~~~~~~~~~~~~~~~gv~~~~ 63 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSF--------------ANCGLPYVIGGV---IDDRNKLLAYTPEVFIKKRGIDVKT 63 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeE--------------EcCCCCeEeccc---cCCHHHcccCCHHHHHHhcCCeEEe
Confidence 367888774 2578999999874321 001111100000 0001111111123333356999988
Q ss_pred cceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEE--eCEEEEccCCCC
Q 039605 199 AVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVME--AKVVVSSCGHDG 250 (352)
Q Consensus 199 ~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~--A~~VIlAtG~~~ 250 (352)
+++|+.+..++..+. +.... +..++. +|.||+|||...
T Consensus 64 ~~~V~~id~~~~~v~-~~~~~-------------~~~~~~~~yd~lIiATG~~p 103 (427)
T TIGR03385 64 NHEVIEVNDERQTVV-VRNNK-------------TNETYEESYDYLILSPGASP 103 (427)
T ss_pred cCEEEEEECCCCEEE-EEECC-------------CCCEEecCCCEEEECCCCCC
Confidence 889999876655432 21110 124566 999999999854
No 370
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.76 E-value=0.077 Score=47.57 Aligned_cols=32 Identities=31% Similarity=0.610 Sum_probs=30.3
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
+++|||+|..|...|..|.+. |..|++||+..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE-GHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC-CCceEEEEcCH
Confidence 589999999999999999999 99999999875
No 371
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.72 E-value=0.075 Score=44.73 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=29.1
Q ss_pred EEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 109 VVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 109 VvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
|.|||||..|.++|..|+++ |.+|.|..+..
T Consensus 2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHC-TEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHc-CCEEEEEeccH
Confidence 78999999999999999999 99999998863
No 372
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=93.63 E-value=1 Score=43.83 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=68.0
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHH
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIM 185 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~ 185 (352)
+..|||+|+|-+|.+....|-.. -++|+||....+.--+ |. ++-...+ ..+.....+.+.
T Consensus 55 Kk~vVVLGsGW~a~S~lk~ldts-~YdV~vVSPRnyFlFT-------PL--------LpS~~vG----Tve~rSIvEPIr 114 (491)
T KOG2495|consen 55 KKRVVVLGSGWGAISLLKKLDTS-LYDVTVVSPRNYFLFT-------PL--------LPSTTVG----TVELRSIVEPIR 114 (491)
T ss_pred CceEEEEcCchHHHHHHHhcccc-ccceEEeccccceEEe-------ec--------cCCcccc----ceeehhhhhhHH
Confidence 45899999999999999999887 8999999877542100 00 0000000 112233333333
Q ss_pred HHHHcCC-CcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC-CCCCCCC
Q 039605 186 SKLLARP-NVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG-PFGATGV 257 (352)
Q Consensus 186 ~~~~~~~-gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~-~~~~~g~ 257 (352)
.-..+.. +++++. .+..++.-+...+.--.+.. ++ ...+..|..|++|+|+|+.. .++.+|+
T Consensus 115 ~i~r~k~~~~~y~e-Aec~~iDp~~k~V~~~s~t~--------~~-~~~e~~i~YDyLViA~GA~~~TFgipGV 178 (491)
T KOG2495|consen 115 AIARKKNGEVKYLE-AECTKIDPDNKKVHCRSLTA--------DS-SDKEFVIGYDYLVIAVGAEPNTFGIPGV 178 (491)
T ss_pred HHhhccCCCceEEe-cccEeecccccEEEEeeecc--------CC-CcceeeecccEEEEeccCCCCCCCCCch
Confidence 3333333 344443 35666665555443211111 00 01346788999999999865 4555555
No 373
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.55 E-value=0.085 Score=45.56 Aligned_cols=31 Identities=29% Similarity=0.471 Sum_probs=27.5
Q ss_pred EEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 109 VVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 109 VvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
|.|||+|.-|...|..++.. |++|.++|.++
T Consensus 2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhC-CCcEEEEECCh
Confidence 78999999999999999999 99999999875
No 374
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.29 E-value=0.12 Score=42.85 Aligned_cols=31 Identities=23% Similarity=0.494 Sum_probs=28.8
Q ss_pred EEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 109 VVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 109 VvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
|+|+|+|..|+..|..|++. |.+|.++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-GHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-CCceEEEEccc
Confidence 68999999999999999998 99999999863
No 375
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.09 E-value=0.1 Score=50.15 Aligned_cols=43 Identities=28% Similarity=0.318 Sum_probs=38.9
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcce
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGS 148 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~ 148 (352)
..|||||||-|..=...|.+.++. |.+|+=+|++.+.||.|+.
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrs-G~sVLHlDsn~yYGg~waS 49 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRS-GSSVLHLDSNEYYGGNWAS 49 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhc-CCceEeccCccccCCcccc
Confidence 378999999999999999999999 9999999999999998543
No 376
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=93.06 E-value=0.21 Score=48.20 Aligned_cols=107 Identities=18% Similarity=0.206 Sum_probs=62.0
Q ss_pred EEEECCcHHHHHHHHHHhcC-CCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHHH
Q 039605 109 VVVVGAGSAGLSCAYEISKN-PNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMSK 187 (352)
Q Consensus 109 VvIIGgG~aGl~aA~~la~~-~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~~ 187 (352)
++|||+|.+|+.+|..+.+. ++.++.++......... ..+...+. ..+. ....++... ..
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~-----~~~~~~~~-~~~~-----------~~~~~~~~~-~~- 61 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYY-----RCPLSLYV-GGGI-----------ASLEDLRYP-PR- 61 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCC-----CCccchHH-hccc-----------CCHHHhccc-ch-
Confidence 58999999999999998873 26788877776533210 00000000 0000 000111000 00
Q ss_pred HHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCC
Q 039605 188 LLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPF 252 (352)
Q Consensus 188 ~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~ 252 (352)
...+.+++++.++.+..+..+...+ .+.+ . .+..|.+|+|||.....
T Consensus 62 ~~~~~~i~~~~~~~v~~id~~~~~v---~~~~--------------g-~~~yd~LvlatGa~~~~ 108 (415)
T COG0446 62 FNRATGIDVRTGTEVTSIDPENKVV---LLDD--------------G-EIEYDYLVLATGARPRP 108 (415)
T ss_pred hHHhhCCEEeeCCEEEEecCCCCEE---EECC--------------C-cccccEEEEcCCCcccC
Confidence 1124589999999999988765543 2221 2 78899999999987543
No 377
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=92.95 E-value=0.078 Score=50.77 Aligned_cols=40 Identities=28% Similarity=0.362 Sum_probs=37.4
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCc
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGAS 146 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~ 146 (352)
+|||+|+|-|..=+..+..|+.. |.+|+.+||++.-|+..
T Consensus 4 eyDvivlGTgl~ecilS~~Ls~~-gkkVLhiDrN~yYG~~s 43 (440)
T KOG1439|consen 4 EYDVIVLGTGLTECILSGALSVD-GKKVLHIDRNDYYGGES 43 (440)
T ss_pred ceeEEEEcCCchhheeeeeeeec-CcEEEEEeCCCCCCccc
Confidence 59999999999999999999999 99999999999988863
No 378
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=92.93 E-value=0.13 Score=44.54 Aligned_cols=34 Identities=32% Similarity=0.574 Sum_probs=28.8
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.-.|+|||+|.++.-+|..|++. |.+|+++-|.+
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~-g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKA-GKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTT-CSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhh-CCEEEEEecCC
Confidence 45899999999999999999999 99999998875
No 379
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.93 E-value=2.6 Score=40.79 Aligned_cols=128 Identities=16% Similarity=0.206 Sum_probs=69.9
Q ss_pred EEEECCcHHHHHHHHHHhcC-CC--CcEEEEeccCCCC--CCccee---ecchHH------------HHHHHcCCccccC
Q 039605 109 VVVVGAGSAGLSCAYEISKN-PN--VQVAIIEQSVSPG--GASGSV---VRKPAH------------LFLDELGIDYDEQ 168 (352)
Q Consensus 109 VvIIGgG~aGl~aA~~la~~-~G--~kV~viEk~~~~G--G~~~~~---~~~~~~------------~~l~~~Gi~~~~~ 168 (352)
|.|||+|.++..+-+.|... .. ..+..|-|+...- ..+... +..... +.+.+.+..++
T Consensus 190 V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~Yk-- 267 (436)
T COG3486 190 VTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYK-- 267 (436)
T ss_pred EEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCcccc--
Confidence 99999999999999998753 12 3355566553211 000000 000011 11122221111
Q ss_pred CCeEEEe--chHHHHHHHHHHHHc--CCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEE
Q 039605 169 DNYVVIK--HAALFTSTIMSKLLA--RPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVS 244 (352)
Q Consensus 169 ~~~~~~~--~~~~~~~~L~~~~~~--~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIl 244 (352)
.+. -..++...|+++-.. ++++.++..+++..+.-.++.-.-+.+.. .. .++..++..|.||+
T Consensus 268 ----gI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~------~~---~~~~~t~~~D~vIl 334 (436)
T COG3486 268 ----GISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRH------HE---TGELETVETDAVIL 334 (436)
T ss_pred ----ccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEee------cc---CCCceEEEeeEEEE
Confidence 111 122344555555332 46799999999999988764322343322 11 23578999999999
Q ss_pred ccCCCCC
Q 039605 245 SCGHDGP 251 (352)
Q Consensus 245 AtG~~~~ 251 (352)
|||-...
T Consensus 335 ATGY~~~ 341 (436)
T COG3486 335 ATGYRRA 341 (436)
T ss_pred ecccccC
Confidence 9997643
No 380
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=92.91 E-value=0.12 Score=40.22 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=30.1
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEecc
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQS 139 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~ 139 (352)
...|+|||||..|..-+..|.+. |.+|+|+.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~-gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEA-GAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCC-TBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCc
Confidence 45799999999999999999999 9999999876
No 381
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=92.70 E-value=0.75 Score=46.71 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=29.4
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.-.|+|||+|.+|+=.|..|++. ..+|.+.-|..
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~-a~~v~~s~R~~ 216 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRV-AKKVYLSTRRG 216 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTT-SCCEEEECC--
T ss_pred CCEEEEEeCCHhHHHHHHHHHHh-cCCeEEEEecc
Confidence 45899999999999999999998 88999888764
No 382
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.64 E-value=0.17 Score=50.07 Aligned_cols=33 Identities=33% Similarity=0.480 Sum_probs=30.7
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
..|+|+|+|..|+.+|..|++. |++|+++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~-G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKL-GAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 4799999999999999999999 99999999864
No 383
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.52 E-value=0.17 Score=44.67 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=30.2
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
-.|+|||||..|...+..|.+. |.+|+|+....
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~-ga~VtVvsp~~ 42 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKA-GAQLRVIAEEL 42 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 3799999999999999999999 99999998753
No 384
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.28 E-value=0.2 Score=42.59 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=29.2
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
..|+|+|+|.+|..|+..|... |++|+++|...
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCH
Confidence 4799999999999999999999 99999999864
No 385
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=91.80 E-value=0.28 Score=40.16 Aligned_cols=33 Identities=24% Similarity=0.474 Sum_probs=30.0
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCc-EEEEecc
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQ-VAIIEQS 139 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~k-V~viEk~ 139 (352)
...++|||+|-+|-.++..|.+. |.+ |+|+.|.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence 45799999999999999999999 887 9999875
No 386
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.79 E-value=0.24 Score=38.97 Aligned_cols=31 Identities=26% Similarity=0.542 Sum_probs=28.1
Q ss_pred EEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 109 VVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 109 VvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
|+|+|.|..|...+..|.+. +.+|+++|+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhC-CCEEEEEECCc
Confidence 68999999999999999997 88999999875
No 387
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=91.67 E-value=0.27 Score=41.50 Aligned_cols=32 Identities=19% Similarity=0.362 Sum_probs=29.1
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEec
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQ 138 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk 138 (352)
.-.|+|||||..|..-+..|.+. |.+|+||..
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~-ga~V~VIsp 44 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDT-GAFVTVVSP 44 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcC
Confidence 45799999999999999999999 999999954
No 388
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.43 E-value=0.22 Score=46.78 Aligned_cols=32 Identities=22% Similarity=0.385 Sum_probs=30.2
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
+|.|||+|.-|...|..|+++ |++|+++|+..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~-G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARA-GHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC-CCeeEEEeCCH
Confidence 599999999999999999999 99999999875
No 389
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=91.41 E-value=0.18 Score=46.90 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=31.5
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCCCcEEEEecc
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQS 139 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~ 139 (352)
..-+|+|||||.+|.-+|.-+... |.+|+++|.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n 200 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLN 200 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc-CCeeEEEecC
Confidence 456899999999999999999998 9999999987
No 390
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.40 E-value=0.28 Score=43.21 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=30.0
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEecc
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQS 139 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~ 139 (352)
...|+|||||-.|...+..|.+. |.+|+||++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~-ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKY-GAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEcCC
Confidence 45799999999999999999999 9999999864
No 391
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=91.29 E-value=0.26 Score=47.65 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=31.0
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
..+|+|||+|.+|+.++..|.+. |.+|.++++..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL-GATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence 45799999999999999999999 99999999863
No 392
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=91.09 E-value=0.27 Score=50.26 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=31.8
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSP 142 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~ 142 (352)
-.|+|||||..|+-.|..|++. |.+|++|++.+..
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~-g~~Vtli~~~~~~ 178 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRY-ASKVTVIVREPDF 178 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHcc-CCEEEEEEeCCcc
Confidence 4799999999999999999999 9999999987643
No 393
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=91.01 E-value=0.22 Score=43.19 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=26.4
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.|.|||.|-.|+..|..+++. |++|+.+|.+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~-G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEK-GHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHT-TSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhC-CCEEEEEeCCh
Confidence 488999999999999999999 99999999874
No 394
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=90.96 E-value=0.25 Score=49.63 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=30.9
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.-.|+|+|+|++|+.++..+... |.+|.++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 45799999999999999999988 99999999864
No 395
>PRK10262 thioredoxin reductase; Provisional
Probab=90.86 E-value=0.3 Score=45.95 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=31.9
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSP 142 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~ 142 (352)
-.|+|||+|..|+..|..|++. +.+|+++++.+..
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~-~~~Vtlv~~~~~~ 181 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRDGF 181 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhh-CCEEEEEEECCcc
Confidence 4799999999999999999999 9999999997643
No 396
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=90.85 E-value=1.3 Score=44.65 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=30.8
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
...|+|+|+|+.|+.++..+... |.+|.++|.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 45899999999999999999999 99999999864
No 397
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=90.81 E-value=0.3 Score=49.36 Aligned_cols=35 Identities=23% Similarity=0.424 Sum_probs=32.1
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSP 142 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~ 142 (352)
-+|+|||+|..|+.+|..|+.. +.+|+|+++.+..
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~-~~~Vtlv~~~~~l 386 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGI-VKHVTVLEFAPEL 386 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCEEEEEEECccc
Confidence 3799999999999999999998 9999999988654
No 398
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=90.66 E-value=0.79 Score=37.67 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=27.7
Q ss_pred EEEECCcHHHHHHHHHHhcCCCCcEEEEeccCC
Q 039605 109 VVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVS 141 (352)
Q Consensus 109 VvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~ 141 (352)
++|+|+|..+...+.-+... |++|+|+|..+.
T Consensus 1 L~I~GaG~va~al~~la~~l-g~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALL-GFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHC-TEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhC-CCEEEEEcCCcc
Confidence 58999999999999999999 999999998754
No 399
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=90.34 E-value=0.42 Score=42.02 Aligned_cols=33 Identities=15% Similarity=0.467 Sum_probs=30.5
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCC-cEEEEecc
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNV-QVAIIEQS 139 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~-kV~viEk~ 139 (352)
...|+|||+|..|...|..|++. |. +++|+|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARA-GIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 56899999999999999999999 98 69999987
No 400
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=90.32 E-value=0.36 Score=47.25 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=30.7
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.-.|+|+|+|+.|+.+|..|... |.+|+++|..+
T Consensus 202 GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCh
Confidence 34799999999999999999989 99999999864
No 401
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=90.32 E-value=0.46 Score=44.74 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=30.0
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.|.|||+|..|...|..|++. |.+|+++.++.
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~ 38 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence 699999999999999999999 99999999864
No 402
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.29 E-value=1.2 Score=42.24 Aligned_cols=184 Identities=13% Similarity=0.158 Sum_probs=118.5
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCccccCCCeEEEechHHHHHHHHH
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDEQDNYVVIKHAALFTSTIMS 186 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~L~~ 186 (352)
-.++|||||-.++..|--++.. |-++-|+=|...+ |+ .....+...+.+
T Consensus 190 kr~vvvGaGYIavE~Agi~~gL-gsethlfiR~~kv---------------LR---------------~FD~~i~~~v~~ 238 (478)
T KOG0405|consen 190 KRVVVVGAGYIAVEFAGIFAGL-GSETHLFIRQEKV---------------LR---------------GFDEMISDLVTE 238 (478)
T ss_pred ceEEEEccceEEEEhhhHHhhc-CCeeEEEEecchh---------------hc---------------chhHHHHHHHHH
Confidence 3799999999998888888888 9999888877532 10 011223333444
Q ss_pred HHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCCCCCCCCCCCcccccc-
Q 039605 187 KLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDGPFGATGVRGMKALDM- 265 (352)
Q Consensus 187 ~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~~~~~~g~~g~~~~~~- 265 (352)
.+. ..|++++.++.+++++..+....-+....+ .....|.++.|+|..+.....++. ..++.+
T Consensus 239 ~~~-~~ginvh~~s~~~~v~K~~~g~~~~i~~~~--------------~i~~vd~llwAiGR~Pntk~L~le-~vGVk~~ 302 (478)
T KOG0405|consen 239 HLE-GRGINVHKNSSVTKVIKTDDGLELVITSHG--------------TIEDVDTLLWAIGRKPNTKGLNLE-NVGVKTD 302 (478)
T ss_pred Hhh-hcceeecccccceeeeecCCCceEEEEecc--------------ccccccEEEEEecCCCCcccccch-hcceeeC
Confidence 444 679999999999999987543222333221 234489999999976443222222 222333
Q ss_pred ccccceeecccccccCceeEecchhhhhcCCCCCCcchhhhhhchHHHHHHHHHHcCCCCCC--CCceeeecCceeeeec
Q 039605 266 NTAEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNAM--DGTYVGSIHPELVLAA 343 (352)
Q Consensus 266 ~~g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~~~~~~sG~~aA~~i~~~l~~~~~~--~~~~~~~~~~~~~~~~ 343 (352)
..+.+++.++.++++|++|+.||....+.- -| -++..|++-|.....+.++...- ++-++-=.||++-+..
T Consensus 303 ~~g~IivDeYq~Tnvp~I~avGDv~gk~~L----TP---VAiaagr~la~rlF~~~~~~kldY~nVp~vVFshP~igtVG 375 (478)
T KOG0405|consen 303 KNGAIIVDEYQNTNVPSIWAVGDVTGKINL----TP---VAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHPPIGTVG 375 (478)
T ss_pred CCCCEEEeccccCCCCceEEeccccCcEec----ch---HHHhhhhhHHHHhhcCCCCCccccccCceEEEecCCccccc
Confidence 347777789999999999999999876531 12 23667899888888765444333 3333334467664443
Q ss_pred C
Q 039605 344 S 344 (352)
Q Consensus 344 ~ 344 (352)
-
T Consensus 376 L 376 (478)
T KOG0405|consen 376 L 376 (478)
T ss_pred C
Confidence 3
No 403
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=90.22 E-value=0.36 Score=44.41 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=39.6
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHc-CCccc
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDEL-GIDYD 166 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~-Gi~~~ 166 (352)
..|+|||+|..|+-+|..|++. +.+|+++++.+... ......+.+.+. |+++.
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~-~~~V~~v~~~~~~~------~~~~~~~~l~~~~gv~~~ 195 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRI-AKKVTLVHRRDKFR------AEKILLDRLRKNPNIEFL 195 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhh-cCEEEEEEeCcccC------cCHHHHHHHHhCCCeEEE
Confidence 4799999999999999999998 99999999876432 122234455555 66554
No 404
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.04 E-value=0.39 Score=44.63 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=29.8
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.|.|||+|..|...|..+++. |.+|.++|...
T Consensus 5 kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 599999999999999999999 99999999764
No 405
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.03 E-value=0.37 Score=44.74 Aligned_cols=32 Identities=31% Similarity=0.509 Sum_probs=29.9
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.|.|||+|.-|...|..|++. |++|+++|+++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC-CCcEEEEeCCH
Confidence 489999999999999999999 99999999874
No 406
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=89.93 E-value=1 Score=38.43 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=30.1
Q ss_pred CCccEEEECCcH-HHHHHHHHHhcCCCCcEEEEecc
Q 039605 105 ADTDVVVVGAGS-AGLSCAYEISKNPNVQVAIIEQS 139 (352)
Q Consensus 105 ~~~DVvIIGgG~-aGl~aA~~la~~~G~kV~viEk~ 139 (352)
....++|||+|- +|..+|..|.++ |.+|.++.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~-g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhC-CCEEEEEECC
Confidence 357899999996 799999999999 9999999975
No 407
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=89.74 E-value=0.49 Score=44.40 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=29.9
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.|+|||+|..|...|..|++. |.+|+++.+..
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARA-GLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCCeEEEEech
Confidence 699999999999999999999 99999999863
No 408
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.53 E-value=0.42 Score=44.44 Aligned_cols=33 Identities=33% Similarity=0.415 Sum_probs=30.6
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVS 141 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~ 141 (352)
.|.|||+|.-|...|..+++. |++|+++|..+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARA-GVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHH
Confidence 599999999999999999999 999999998753
No 409
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=89.22 E-value=0.24 Score=47.39 Aligned_cols=59 Identities=25% Similarity=0.371 Sum_probs=48.7
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCCCCCCcceeecchHHHHHHHcCCcccc
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDE 167 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~ 167 (352)
..+|||+|..||..+.--.+. |.+|++||-.+.+|+....-+.....+.|..-|+.|..
T Consensus 213 ~~~viG~G~IGLE~gsV~~rL-GseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l 271 (506)
T KOG1335|consen 213 KLTVIGAGYIGLEMGSVWSRL-GSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKL 271 (506)
T ss_pred eEEEEcCceeeeehhhHHHhc-CCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEe
Confidence 689999999999999999999 99999999999998864444445566777778887754
No 410
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=89.16 E-value=0.6 Score=42.96 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=31.8
Q ss_pred CCccEEEECCcHHHHHHHHHHhcCCC-CcEEEEeccCC
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISKNPN-VQVAIIEQSVS 141 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~~~G-~kV~viEk~~~ 141 (352)
....|+|||+|..|..+|..|++. | -+++|+|....
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~-GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALART-GIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCEe
Confidence 356899999999999999999999 8 68999997643
No 411
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=89.12 E-value=0.51 Score=43.88 Aligned_cols=31 Identities=16% Similarity=0.407 Sum_probs=29.0
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEecc
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQS 139 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~ 139 (352)
.|.|||+|..|...|..|++. |.+|+++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-GHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence 489999999999999999999 9999999984
No 412
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=89.08 E-value=0.5 Score=44.00 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=28.5
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEec
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQ 138 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk 138 (352)
.|.|||+|..|...|..|++. |.+|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-GRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-CCceEEEec
Confidence 489999999999999999999 999999998
No 413
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.99 E-value=0.51 Score=44.67 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=30.0
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.|.|||+|.-|...|..++.. |++|+++|..+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~a-G~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAH-GLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 599999999999999999999 99999999864
No 414
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=88.85 E-value=0.57 Score=38.14 Aligned_cols=33 Identities=21% Similarity=0.635 Sum_probs=29.4
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCC-cEEEEeccC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNV-QVAIIEQSV 140 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~-kV~viEk~~ 140 (352)
..|+|||+|..|...|..|++. |. +++|+|...
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~-Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS-GVGKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH-TTSEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHh-CCCceeecCCcc
Confidence 4699999999999999999999 87 699999764
No 415
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=88.63 E-value=0.64 Score=41.66 Aligned_cols=34 Identities=21% Similarity=0.472 Sum_probs=30.3
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCc---EEEEeccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQ---VAIIEQSV 140 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~k---V~viEk~~ 140 (352)
+..++|+|+|.+|..+|..|.+. |.+ +.|+++..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~-G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAA-GAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHc-CcCcceEEEEeCCC
Confidence 34799999999999999999998 875 99999974
No 416
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.57 E-value=0.55 Score=43.69 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=29.9
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.|.|||+|.-|...|..+++. |.+|+++|+.+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFART-GYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 599999999999999999999 99999999865
No 417
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=88.51 E-value=2.5 Score=42.30 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCC
Q 039605 177 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGH 248 (352)
Q Consensus 177 ~~~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~ 248 (352)
...+.+.|.+.+. +.|++|+++++|.+|..+++++.++.+.++ . .++..++.||.||.++-.
T Consensus 231 ~~~l~~aL~~~~~-~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~------~---~~~~~~~~ad~VI~~~~~ 292 (492)
T TIGR02733 231 MQTLSDRLVEALK-RDGGNLLTGQRVTAIHTKGGRAGWVVVVDS------R---KQEDLNVKADDVVANLPP 292 (492)
T ss_pred HHHHHHHHHHHHH-hcCCEEeCCceEEEEEEeCCeEEEEEEecC------C---CCceEEEECCEEEECCCH
Confidence 4556677777776 579999999999999999888777776431 0 011257899999999885
No 418
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=88.49 E-value=0.45 Score=44.01 Aligned_cols=35 Identities=34% Similarity=0.531 Sum_probs=28.3
Q ss_pred ccEEEECCcHHHHHHHHHHhcC------CCCcEEEEeccCC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKN------PNVQVAIIEQSVS 141 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~------~G~kV~viEk~~~ 141 (352)
.+|+|||+|..||+.|+.+.+. +-.+|.|++-...
T Consensus 4 ~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~ 44 (342)
T KOG3923|consen 4 PRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFT 44 (342)
T ss_pred ccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCc
Confidence 4899999999999999877763 2478999986544
No 419
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=88.30 E-value=0.61 Score=43.35 Aligned_cols=32 Identities=31% Similarity=0.459 Sum_probs=29.2
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCC-cEEEEecc
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNV-QVAIIEQS 139 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~-kV~viEk~ 139 (352)
..|+|||+|.+|.++++.|++. |. +|+|++|.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~-G~~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTL-GVERLTIFDVD 160 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 4799999999999999999998 87 79999886
No 420
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.17 E-value=0.76 Score=42.74 Aligned_cols=32 Identities=28% Similarity=0.282 Sum_probs=30.0
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.|.|||+|.-|...|..|+++ |.+|+++|+..
T Consensus 6 kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALA-GYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence 599999999999999999999 99999999864
No 421
>PRK04148 hypothetical protein; Provisional
Probab=88.16 E-value=0.41 Score=39.15 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=29.1
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
..+++||.| .|...|..|++. |.+|+.+|.++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~-G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKES-GFDVIVIDINE 49 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHC-CCEEEEEECCH
Confidence 369999999 999889999999 99999999875
No 422
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=88.13 E-value=0.7 Score=44.10 Aligned_cols=34 Identities=24% Similarity=0.522 Sum_probs=30.9
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCC-cEEEEeccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNV-QVAIIEQSV 140 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~-kV~viEk~~ 140 (352)
...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 45799999999999999999999 97 899999864
No 423
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=87.94 E-value=0.76 Score=43.85 Aligned_cols=34 Identities=26% Similarity=0.556 Sum_probs=31.1
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCC-cEEEEeccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNV-QVAIIEQSV 140 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~-kV~viEk~~ 140 (352)
...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus 24 ~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCc
Confidence 56899999999999999999999 98 899999863
No 424
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.85 E-value=0.73 Score=43.36 Aligned_cols=32 Identities=25% Similarity=0.503 Sum_probs=29.0
Q ss_pred cEEEECCcHHHHHHHHHHhcCCC--CcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPN--VQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G--~kV~viEk~~ 140 (352)
.|.|||+|..|.++|+.|++. | ..+.++|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~-g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR-GLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCCEEEEEECCc
Confidence 589999999999999999998 8 4899999864
No 425
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=87.78 E-value=0.85 Score=40.08 Aligned_cols=34 Identities=24% Similarity=0.531 Sum_probs=30.9
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCC-cEEEEeccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNV-QVAIIEQSV 140 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~-kV~viEk~~ 140 (352)
+..|+|||.|..|..+|..|++. |. +++++|...
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCCE
Confidence 56899999999999999999999 87 899999864
No 426
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=87.77 E-value=0.66 Score=39.21 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=27.0
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
..++|+|-|..|-.+|..|+.. |.+|+|.|..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~-Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGL-GARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHT-T-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhC-CCEEEEEECCh
Confidence 4699999999999999999999 99999999875
No 427
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=87.76 E-value=0.53 Score=48.37 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=42.4
Q ss_pred ccceeecccccccCceeEecchhh-hhcCCCCCCc-chhhhhhchHHHHHHHHHHcCC
Q 039605 268 AEDAIVKLTREIVPGMIVAGMEVA-EIDGAPRMGP-TFGAMMISGQKAAHLALKSLGQ 323 (352)
Q Consensus 268 g~~~vv~~~~~~~pg~~~aG~~~~-~~~g~~r~g~-~~~~~~~sG~~aA~~i~~~l~~ 323 (352)
|.+.+....++.+||+|++|++.. .++|.+|.|. ....++-.|++|++.+.++++.
T Consensus 359 GGi~vd~~~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~ 416 (582)
T PRK09231 359 GGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERAAT 416 (582)
T ss_pred CCEEECCCCccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhhhc
Confidence 333455666789999999999864 6788888864 3344567899999999998754
No 428
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=87.49 E-value=0.88 Score=37.37 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=28.5
Q ss_pred EEEECCcHHHHHHHHHHhcCCCC-cEEEEeccC
Q 039605 109 VVVVGAGSAGLSCAYEISKNPNV-QVAIIEQSV 140 (352)
Q Consensus 109 VvIIGgG~aGl~aA~~la~~~G~-kV~viEk~~ 140 (352)
|+|||+|..|...|..|++. |. +++++|...
T Consensus 2 VliiG~GglGs~ia~~L~~~-Gv~~i~ivD~d~ 33 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARS-GVGKITLIDFDT 33 (143)
T ss_pred EEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCC
Confidence 89999999999999999999 87 699999764
No 429
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.48 E-value=0.66 Score=45.83 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=29.6
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.++|+|+|..|+++|..|++. |++|++.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~-G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKL-GANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 589999999999999999999 99999999754
No 430
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.43 E-value=0.68 Score=42.79 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=29.8
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.|.|||+|..|...|..+++. |++|+++|.++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-CCceEEEeCCH
Confidence 599999999999999999999 99999999764
No 431
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=87.34 E-value=0.78 Score=44.79 Aligned_cols=34 Identities=26% Similarity=0.283 Sum_probs=30.9
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
...|+|+|.|..|..+|..|... |.+|+++|..+
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCCh
Confidence 45799999999999999999988 99999999765
No 432
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=87.29 E-value=1.5 Score=42.65 Aligned_cols=123 Identities=12% Similarity=0.168 Sum_probs=68.8
Q ss_pred CCccEEEECCcHHHHHHHHHHhc-CCCCcEEEEeccCCCCCCcceeecchHHHHHHHcC-------Cccc-cCCC-eEEE
Q 039605 105 ADTDVVVVGAGSAGLSCAYEISK-NPNVQVAIIEQSVSPGGASGSVVRKPAHLFLDELG-------IDYD-EQDN-YVVI 174 (352)
Q Consensus 105 ~~~DVvIIGgG~aGl~aA~~la~-~~G~kV~viEk~~~~GG~~~~~~~~~~~~~l~~~G-------i~~~-~~~~-~~~~ 174 (352)
.+...+|||+|.+-.+++..... .++.+|++|-..+..-- .+.|....|.-++ +.|. |.+. ..+.
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPY-----mRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsif 251 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPY-----MRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIF 251 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcc-----cCCCcchhceecCCCChhhheeecccCCccceeE
Confidence 46789999999998888776654 23889999876543210 1111111110000 1111 1100 0000
Q ss_pred echHH-HH-HHHHHHHHcCCCcEEEccceeEEEEEeCCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCCCC
Q 039605 175 KHAAL-FT-STIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGHDG 250 (352)
Q Consensus 175 ~~~~~-~~-~~L~~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~~~ 250 (352)
.+... |. ..-+..+. +-||.++.+.+|.++..++.. |.+++| .+|..|..+||||..+
T Consensus 252 fepd~FfvspeDLp~~~-nGGvAvl~G~kvvkid~~d~~---V~LnDG--------------~~I~YdkcLIATG~~P 311 (659)
T KOG1346|consen 252 FEPDGFFVSPEDLPKAV-NGGVAVLRGRKVVKIDEEDKK---VILNDG--------------TTIGYDKCLIATGVRP 311 (659)
T ss_pred ecCCcceeChhHCcccc-cCceEEEeccceEEeecccCe---EEecCC--------------cEeehhheeeecCcCc
Confidence 01111 10 11122222 678999999999999887764 345543 7899999999999765
No 433
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=87.28 E-value=0.91 Score=38.90 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=28.5
Q ss_pred EEEECCcHHHHHHHHHHhcCCCCc-EEEEeccC
Q 039605 109 VVVVGAGSAGLSCAYEISKNPNVQ-VAIIEQSV 140 (352)
Q Consensus 109 VvIIGgG~aGl~aA~~la~~~G~k-V~viEk~~ 140 (352)
|+|||+|..|...|..|++. |.. ++++|...
T Consensus 2 VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 89999999999999999999 885 99999864
No 434
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=87.18 E-value=0.72 Score=48.93 Aligned_cols=56 Identities=21% Similarity=0.290 Sum_probs=39.3
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCc-EEEEeccCCCCCCcceeecchHHHHHHHcCCcccc
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQ-VAIIEQSVSPGGASGSVVRKPAHLFLDELGIDYDE 167 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~k-V~viEk~~~~GG~~~~~~~~~~~~~l~~~Gi~~~~ 167 (352)
-.|+|||||..|+-+|..|.+. |.+ |+|+++..... ........+.+.+.|+++..
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~-Ga~~Vtlv~r~~~~~----~~~~~~e~~~~~~~GV~i~~ 627 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRL-GAERVTIVYRRSEEE----MPARLEEVKHAKEEGIEFLT 627 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHc-CCCeEEEeeecCccc----CCCCHHHHHHHHHcCCEEEe
Confidence 4799999999999999999999 987 99999865310 00011223445667776543
No 435
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=87.09 E-value=0.8 Score=44.33 Aligned_cols=31 Identities=32% Similarity=0.587 Sum_probs=29.5
Q ss_pred cEEEECCcHHHHHHHHHHhcCCC-CcEEEEecc
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPN-VQVAIIEQS 139 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G-~kV~viEk~ 139 (352)
+|+|||+|-.|..+|..|++. | .+|++.+|.
T Consensus 3 ~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs 34 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQN-GDGEVTIADRS 34 (389)
T ss_pred cEEEECCchhHHHHHHHHHhC-CCceEEEEeCC
Confidence 799999999999999999998 7 899999997
No 436
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=86.94 E-value=0.87 Score=42.40 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=29.3
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCc-EEEEeccC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQ-VAIIEQSV 140 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~k-V~viEk~~ 140 (352)
..++|+|+|-+|.++|+.|++. |.+ |.|+.|..
T Consensus 127 k~vlI~GAGGagrAia~~La~~-G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALD-GAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCc
Confidence 4699999999999999999999 987 99998863
No 437
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=86.78 E-value=1.1 Score=42.31 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=30.3
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCC-cEEEEeccCC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNV-QVAIIEQSVS 141 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~-kV~viEk~~~ 141 (352)
..|.|||+|..|...|+.++.. |+ +++|+|..+.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~-gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK-NLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCCc
Confidence 4799999999999999999988 86 8999998654
No 438
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=86.64 E-value=0.88 Score=43.20 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=29.4
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEecc
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQS 139 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~ 139 (352)
.|.|||+|..|...|..|++. |.+|.++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~-G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAA-GADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCcEEEEecH
Confidence 599999999999999999999 9999999985
No 439
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=86.54 E-value=0.69 Score=47.08 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=41.5
Q ss_pred cceeecccccccCceeEecchhhhhcCCCCCCc-chhhhhhchHHHHHHHHHHcCC
Q 039605 269 EDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGP-TFGAMMISGQKAAHLALKSLGQ 323 (352)
Q Consensus 269 ~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~-~~~~~~~sG~~aA~~i~~~l~~ 323 (352)
...+....++.+||+|++|.+...++|.+|.+. ....++..|+.|++.|.++++.
T Consensus 350 Gi~vd~~~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~~~ 405 (543)
T PRK06263 350 GIRINEDCETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNAEN 405 (543)
T ss_pred CEEECCCCcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHhhh
Confidence 334556667899999999998777778777652 3334577899999999988754
No 440
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=86.31 E-value=1 Score=42.38 Aligned_cols=32 Identities=19% Similarity=0.538 Sum_probs=28.7
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCC-cEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNV-QVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~-kV~viEk~~ 140 (352)
.|.|||+|..|...|+.++.. |+ +|+++|...
T Consensus 3 KV~VIGaG~vG~~iA~~la~~-g~~~VvlvDi~~ 35 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEK-ELADLVLLDVVE 35 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCC
Confidence 589999999999999999998 76 899999843
No 441
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=85.64 E-value=1.1 Score=45.87 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=31.3
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
+-.++|+|.|..|...|..|.++ |.+|++||+++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~-g~~vvvId~d~ 450 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAA-GIPLVVIETSR 450 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHC-CCCEEEEECCH
Confidence 35799999999999999999999 99999999874
No 442
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=85.58 E-value=1.3 Score=39.21 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=30.6
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCc-EEEEeccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQ-VAIIEQSV 140 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~k-V~viEk~~ 140 (352)
...|+|||+|..|...|..|++. |.. ++++|...
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 56899999999999999999999 875 99999864
No 443
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=85.54 E-value=1.2 Score=39.10 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=29.7
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEecc
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQS 139 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~ 139 (352)
..++|+|.|-.|..+|..|.+. |.+|++.|++
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~-G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEE-GAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 4699999999999999999999 9999999875
No 444
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=85.53 E-value=1.5 Score=41.46 Aligned_cols=34 Identities=32% Similarity=0.611 Sum_probs=30.0
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCC--cEEEEeccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNV--QVAIIEQSV 140 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~--kV~viEk~~ 140 (352)
...|.|||+|..|..+|+.|+.. |+ .+.|+|.+.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~-~~~~el~L~D~~~ 41 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQ-GIADELVIIDINK 41 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCC
Confidence 45899999999999999999988 77 799999754
No 445
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=85.33 E-value=1.2 Score=39.76 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=29.6
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEecc
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQS 139 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~ 139 (352)
...|+|||||..++.=+..|.+. |.+|+||-..
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~-gA~VtVVap~ 57 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKK-GCYVYILSKK 57 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCC
Confidence 45699999999999999999999 9999999654
No 446
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.29 E-value=1 Score=45.20 Aligned_cols=31 Identities=19% Similarity=0.390 Sum_probs=28.8
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEecc
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQS 139 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~ 139 (352)
.|+|+|.|..|++++..|.+. |.+|++.|..
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~~-G~~v~~~D~~ 44 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRF-GARPTVCDDD 44 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 599999999999999999989 9999999964
No 447
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.26 E-value=1.4 Score=43.66 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=29.8
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.++|+|.|.+|+++|..|+++ |++|++.|...
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~-g~~v~~~d~~~ 38 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKN-GAEVAAYDAEL 38 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 699999999999999999999 99999999754
No 448
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.18 E-value=1.1 Score=41.93 Aligned_cols=32 Identities=25% Similarity=0.486 Sum_probs=29.6
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.|.|||+|.-|...|..|++. |++|+++|+..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARK-GLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence 599999999999999999999 99999999754
No 449
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=85.12 E-value=1.2 Score=43.91 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=30.9
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
...|+|+|.|..|..+|..|... |.+|+++|..+
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp 245 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDP 245 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCc
Confidence 34699999999999999999999 99999999765
No 450
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=84.75 E-value=1.3 Score=41.39 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=31.3
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
...++|||.|.+|..++..|.+. |.+|.++++..
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence 56899999999999999999999 99999999874
No 451
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.73 E-value=0.7 Score=43.76 Aligned_cols=35 Identities=23% Similarity=0.442 Sum_probs=30.0
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccCC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSVS 141 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~~ 141 (352)
-.||.|||||-+|..||+.|+-- =..|+|+|-.+.
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGi-v~hVtllEF~~e 388 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPE 388 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhh-hheeeeeecchh
Confidence 45899999999999999999865 457999997664
No 452
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=84.68 E-value=1.5 Score=39.75 Aligned_cols=34 Identities=18% Similarity=0.428 Sum_probs=30.1
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCC-cEEEEeccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNV-QVAIIEQSV 140 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~-kV~viEk~~ 140 (352)
...|+|||+|..|..+|..|++. |. +++++|...
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~-Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAA-GVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCc
Confidence 46899999999999999999999 75 688989764
No 453
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.54 E-value=1.3 Score=41.88 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=29.5
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.|.|||+|.-|...|..|++. |.+|.++.+..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-KISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-CCeEEEEecCH
Confidence 489999999999999999999 99999999853
No 454
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=84.51 E-value=1.6 Score=37.91 Aligned_cols=33 Identities=21% Similarity=0.476 Sum_probs=29.4
Q ss_pred CccEEEECC-cHHHHHHHHHHhcCCCCcEEEEecc
Q 039605 106 DTDVVVVGA-GSAGLSCAYEISKNPNVQVAIIEQS 139 (352)
Q Consensus 106 ~~DVvIIGg-G~aGl~aA~~la~~~G~kV~viEk~ 139 (352)
...++|+|+ |..|..++..|++. |.+|.++.|+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~-g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLARE-GARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 347999997 99999999999999 9999999875
No 455
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=84.51 E-value=1.2 Score=48.55 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=30.2
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
-.|+|||||..|+-+|..+.+. |.+|+++.+..
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~-Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRL-GGNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCEEEEEEecC
Confidence 4799999999999999999999 99999998753
No 456
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=84.47 E-value=0.98 Score=46.52 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=42.0
Q ss_pred ccceeecccccccCceeEecchhhhhcCCCCCCc-chhhhhhchHHHHHHHHHHcCC
Q 039605 268 AEDAIVKLTREIVPGMIVAGMEVAEIDGAPRMGP-TFGAMMISGQKAAHLALKSLGQ 323 (352)
Q Consensus 268 g~~~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~-~~~~~~~sG~~aA~~i~~~l~~ 323 (352)
|.+.+..+..+.+||+|++|.+...++|.+|.+. ....++-.|++|++.+.+++..
T Consensus 356 GGi~vd~~~~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~~~ 412 (589)
T PRK08641 356 GGLWVDYDQMTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYIKG 412 (589)
T ss_pred CCeEECCCCCeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3334455567889999999998877888888863 2334566899999999988753
No 457
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=84.41 E-value=1.2 Score=41.38 Aligned_cols=32 Identities=28% Similarity=0.352 Sum_probs=29.9
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.|.|||+|.-|...|..+++. |.+|.++|+..
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~-G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAA-GMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 499999999999999999999 99999999864
No 458
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=84.39 E-value=1.3 Score=43.60 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=30.0
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.|.|||.|-.|+..|..|+++ |++|+++|+++
T Consensus 5 kI~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~ 36 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASR-QKQVIGVDINQ 36 (415)
T ss_pred EEEEECcchhhHHHHHHHHhC-CCEEEEEeCCH
Confidence 599999999999999999999 99999999864
No 459
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=84.28 E-value=1 Score=46.05 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=40.3
Q ss_pred eeecccccc-cCceeEecchhh-hhcCCCCCCcch-hhhhhchHHHHHHHHHHcCC
Q 039605 271 AIVKLTREI-VPGMIVAGMEVA-EIDGAPRMGPTF-GAMMISGQKAAHLALKSLGQ 323 (352)
Q Consensus 271 ~vv~~~~~~-~pg~~~aG~~~~-~~~g~~r~g~~~-~~~~~sG~~aA~~i~~~l~~ 323 (352)
.+..+.++. +||+|++|.+.. .++|.+|.|... ..++..|++|++.+.+++..
T Consensus 350 ~vd~~~~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~ 405 (566)
T PRK06452 350 DVDIDGRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLKS 405 (566)
T ss_pred EECCCCCcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455665 999999999875 688999987433 45577899999999988753
No 460
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.27 E-value=1.4 Score=43.76 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=28.5
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEecc
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQS 139 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~ 139 (352)
.-.|+|+|.|.+|.++|..|. . |.+|++.|..
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~-~-g~~v~v~D~~ 37 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQ-N-KYDVIVYDDL 37 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHh-C-CCEEEEECCC
Confidence 346999999999999999998 6 9999999954
No 461
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=84.18 E-value=1.5 Score=41.24 Aligned_cols=33 Identities=30% Similarity=0.571 Sum_probs=29.0
Q ss_pred cEEEECCcHHHHHHHHHHhcCCC--CcEEEEeccCC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPN--VQVAIIEQSVS 141 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G--~kV~viEk~~~ 141 (352)
.|.|||+|..|.++|+.|+.. | ..+.++|+...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~-g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQ-GIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCcc
Confidence 489999999999999999998 8 47999998643
No 462
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=84.03 E-value=1.1 Score=43.85 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=29.8
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.|.|||.|..|+..|..|++. |++|+++|+..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-GHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-CCeEEEEECCH
Confidence 488999999999999999999 99999999864
No 463
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=83.95 E-value=1.3 Score=45.55 Aligned_cols=48 Identities=19% Similarity=0.332 Sum_probs=37.5
Q ss_pred cccccCceeEecchhh-hhcCCCCCCcch-hhhhhchHHHHHHHHHHcCC
Q 039605 276 TREIVPGMIVAGMEVA-EIDGAPRMGPTF-GAMMISGQKAAHLALKSLGQ 323 (352)
Q Consensus 276 ~~~~~pg~~~aG~~~~-~~~g~~r~g~~~-~~~~~sG~~aA~~i~~~l~~ 323 (352)
..+.+||+|++|.+.. .++|.+|.|... ..++..|++|++.|.++++.
T Consensus 366 ~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~ 415 (575)
T PRK05945 366 ADGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEYVQG 415 (575)
T ss_pred CCCccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 3457999999999875 678888887433 45577899999999988753
No 464
>PRK08328 hypothetical protein; Provisional
Probab=83.93 E-value=1.6 Score=39.18 Aligned_cols=34 Identities=29% Similarity=0.575 Sum_probs=29.9
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCC-cEEEEeccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNV-QVAIIEQSV 140 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~-kV~viEk~~ 140 (352)
+..|+|||+|..|..+|..|++. |. +++|+|...
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~-Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAA-GVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 56899999999999999999999 86 588998654
No 465
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.77 E-value=1.3 Score=44.00 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=29.8
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.|+|+|.|.+|+++|..|.+. |++|.+.|+.+
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~-G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKL-GAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHC-CCEEEEECCCC
Confidence 699999999999999999999 99999999764
No 466
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=83.76 E-value=0.99 Score=46.16 Aligned_cols=46 Identities=26% Similarity=0.431 Sum_probs=36.9
Q ss_pred cccCceeEecchhh-hhcCCCCCCc-chhhhhhchHHHHHHHHHHcCC
Q 039605 278 EIVPGMIVAGMEVA-EIDGAPRMGP-TFGAMMISGQKAAHLALKSLGQ 323 (352)
Q Consensus 278 ~~~pg~~~aG~~~~-~~~g~~r~g~-~~~~~~~sG~~aA~~i~~~l~~ 323 (352)
+.+||+|++|.+.. .++|.+|.+. ....++..|++|++.|.++++.
T Consensus 357 t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~~~ 404 (566)
T TIGR01812 357 TIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAAK 404 (566)
T ss_pred cccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999875 6788888753 3445677899999999988753
No 467
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=83.76 E-value=1.5 Score=40.85 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=31.0
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
...++|||.|..|...|..|... |.+|.++++..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~-G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSAL-GARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 45799999999999999999999 99999999864
No 468
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=83.74 E-value=1.6 Score=39.54 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=30.4
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCC-cEEEEeccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNV-QVAIIEQSV 140 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~-kV~viEk~~ 140 (352)
...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus 32 ~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAA-GVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCE
Confidence 56899999999999999999999 86 799999763
No 469
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=83.72 E-value=1.6 Score=40.39 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=28.7
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCC-cEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNV-QVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~-kV~viEk~~ 140 (352)
.++|+|+|-++.++++.|++. |. +|.|+.|..
T Consensus 124 ~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~~ 156 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDA-GFTDGTIVARNE 156 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCH
Confidence 699999999999999999998 76 599998863
No 470
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=83.71 E-value=1.6 Score=39.54 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=29.7
Q ss_pred CccEEEECCcHHHHHHHHHHhcCC----------CCcEEEEeccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNP----------NVQVAIIEQSV 140 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~----------G~kV~viEk~~ 140 (352)
...|+|||+|..|..++..|++.+ |.+++|+|...
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 568999999999999999999861 33899999764
No 471
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=83.65 E-value=1.2 Score=45.66 Aligned_cols=53 Identities=17% Similarity=0.343 Sum_probs=40.5
Q ss_pred eeecccccccCceeEecchhh-hhcCCCCCCc-chhhhhhchHHHHHHHHHHcCC
Q 039605 271 AIVKLTREIVPGMIVAGMEVA-EIDGAPRMGP-TFGAMMISGQKAAHLALKSLGQ 323 (352)
Q Consensus 271 ~vv~~~~~~~pg~~~aG~~~~-~~~g~~r~g~-~~~~~~~sG~~aA~~i~~~l~~ 323 (352)
.+.....+.+||+|++|.+.. .++|.+|.+. ....++..|++|++.+.++...
T Consensus 361 ~~d~~~~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~~~ 415 (580)
T TIGR01176 361 ETDINCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAERAAR 415 (580)
T ss_pred eECcCcccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHhhcc
Confidence 445566788999999999863 6788888764 3345577899999999988654
No 472
>PLN02494 adenosylhomocysteinase
Probab=83.53 E-value=1.5 Score=43.46 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=30.9
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.-.|+|+|.|..|..+|..|... |.+|+++|..+
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp 287 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDP 287 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 45799999999999999999988 99999999865
No 473
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=83.48 E-value=1.4 Score=41.26 Aligned_cols=31 Identities=19% Similarity=0.446 Sum_probs=27.9
Q ss_pred EEEECCcHHHHHHHHHHhcCCCC-cEEEEeccC
Q 039605 109 VVVVGAGSAGLSCAYEISKNPNV-QVAIIEQSV 140 (352)
Q Consensus 109 VvIIGgG~aGl~aA~~la~~~G~-kV~viEk~~ 140 (352)
|.|||+|..|...|..++.. |+ +|+++|...
T Consensus 1 I~IIGaG~vG~~ia~~la~~-~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK-ELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC-CCcEEEEEeCCC
Confidence 57999999999999999987 76 999999874
No 474
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=83.48 E-value=1.6 Score=41.05 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=29.8
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.|.|||+|..|...|..|++. |.+|.++++..
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-GHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence 599999999999999999999 99999999863
No 475
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=83.39 E-value=1.4 Score=42.54 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=29.9
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.+.|||.|-.||..|.-|++. |.+|+.+|...
T Consensus 2 kI~viGtGYVGLv~g~~lA~~-GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAEL-GHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHc-CCeEEEEeCCH
Confidence 588999999999999999999 99999999864
No 476
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.23 E-value=1.9 Score=40.42 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=30.1
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.|.|||+|.-|...|..|++. |++|.+.++..
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~-G~~V~~~~r~~ 37 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASAN-GHRVRVWSRRS 37 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 599999999999999999999 99999999864
No 477
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=83.15 E-value=1.4 Score=43.50 Aligned_cols=32 Identities=31% Similarity=0.584 Sum_probs=29.6
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.|+|+|+|..|...|..|.+. |.+|+++|+++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~-g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGE-NNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEECCH
Confidence 589999999999999999999 99999999853
No 478
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=83.06 E-value=1.5 Score=42.03 Aligned_cols=32 Identities=34% Similarity=0.403 Sum_probs=25.4
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCC-cEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNV-QVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~-kV~viEk~~ 140 (352)
.|+|+|+||.||.++..+... |. +|+++|+.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCH
Confidence 599999999999997777667 75 567777653
No 479
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.02 E-value=1.4 Score=44.02 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=29.3
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEecc
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQS 139 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~ 139 (352)
.|+|+|.|-+|.++|..|.+. |.+|++.|.+
T Consensus 10 ~v~v~G~G~sG~~~~~~l~~~-g~~v~~~d~~ 40 (468)
T PRK04690 10 RVALWGWGREGRAAYRALRAH-LPAQALTLFC 40 (468)
T ss_pred EEEEEccchhhHHHHHHHHHc-CCEEEEEcCC
Confidence 699999999999999999999 9999999964
No 480
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=82.88 E-value=4.5 Score=39.97 Aligned_cols=60 Identities=10% Similarity=0.047 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCCCcEEEccceeEEEEEe-CCEEEEEEEcccceeccCCCCCCCCCeEEEeCEEEEccCC
Q 039605 179 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGIVTNWALVSMNHDSQSCMDPNVMEAKVVVSSCGH 248 (352)
Q Consensus 179 ~~~~~L~~~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~g~~~~~~~~~~~g~~~~i~A~~VIlAtG~ 248 (352)
.+.+.+.+.+. +.|++|++++.|++|..+ +++++++.+.++ ++ .+..++.||.||+|+..
T Consensus 214 ~l~~~l~~~l~-~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~------~~---~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 214 RLCQPIVDYIT-SRGGEVRLNSRLKEIVLNEDGSVKHFVLADG------EG---QRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHH-hcCCEEeCCCeeEEEEECCCCCEEEEEEecC------CC---CceeEEECCEEEEcCCH
Confidence 45566666665 568999999999999864 456878877432 00 01127999999999874
No 481
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=82.86 E-value=1.9 Score=40.44 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=28.5
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCC--cEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNV--QVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~--kV~viEk~~ 140 (352)
.|.|||.|..|.+.|..|.+. |. +|.++++..
T Consensus 8 ~I~IIG~G~mG~sla~~l~~~-g~~~~V~~~dr~~ 41 (307)
T PRK07502 8 RVALIGIGLIGSSLARAIRRL-GLAGEIVGADRSA 41 (307)
T ss_pred EEEEEeeCHHHHHHHHHHHhc-CCCcEEEEEECCH
Confidence 699999999999999999988 74 899998764
No 482
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=82.80 E-value=1.5 Score=44.46 Aligned_cols=32 Identities=34% Similarity=0.541 Sum_probs=29.1
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEecc
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQS 139 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~ 139 (352)
..++|+|+|.+|.++++.|++. |.+|+++.+.
T Consensus 380 k~vlIlGaGGagrAia~~L~~~-G~~V~i~nR~ 411 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEK-GARVVIANRT 411 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 3589999999999999999999 9999999874
No 483
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=82.77 E-value=1.7 Score=39.89 Aligned_cols=32 Identities=28% Similarity=0.490 Sum_probs=29.2
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCCcEEEEecc
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQS 139 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~ 139 (352)
..++|+|+|.+|.+++..|++. |.+|.+++|.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~-g~~v~v~~R~ 149 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKA-DCNVIIANRT 149 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 3699999999999999999999 9999999875
No 484
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=82.71 E-value=1.5 Score=44.25 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=30.1
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.|.|||+|.-|...|..+++. |++|+++|+..
T Consensus 7 kV~VIGaG~MG~gIA~~la~a-G~~V~l~d~~~ 38 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASA-GHQVLLYDIRA 38 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 599999999999999999999 99999999874
No 485
>PRK06223 malate dehydrogenase; Reviewed
Probab=82.66 E-value=1.8 Score=40.50 Aligned_cols=32 Identities=19% Similarity=0.414 Sum_probs=28.9
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCC-cEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNV-QVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~-kV~viEk~~ 140 (352)
.|.|||+|..|...|..++.. |+ .|.++|...
T Consensus 4 KI~VIGaG~vG~~ia~~la~~-~~~ev~L~D~~~ 36 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALK-ELGDVVLFDIVE 36 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEEECCC
Confidence 699999999999999999987 65 999999854
No 486
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=82.64 E-value=1.3 Score=45.79 Aligned_cols=52 Identities=19% Similarity=0.169 Sum_probs=40.0
Q ss_pred eeecccccccCceeEecchhhhhcCCCCCCcch-hhhhhchHHHHHHHHHHcC
Q 039605 271 AIVKLTREIVPGMIVAGMEVAEIDGAPRMGPTF-GAMMISGQKAAHLALKSLG 322 (352)
Q Consensus 271 ~vv~~~~~~~pg~~~aG~~~~~~~g~~r~g~~~-~~~~~sG~~aA~~i~~~l~ 322 (352)
.+....++.+||+|++|.+...++|.+|.+... ..++..|++|++.|.+++.
T Consensus 374 ~~d~~~~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~~ 426 (603)
T TIGR01811 374 WVDYDQMTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPNYL 426 (603)
T ss_pred eECCCCcccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555678999999999877788999976433 3456789999999988863
No 487
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=82.54 E-value=1.8 Score=40.28 Aligned_cols=32 Identities=31% Similarity=0.564 Sum_probs=28.3
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCCC-cEEEEecc
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPNV-QVAIIEQS 139 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G~-kV~viEk~ 139 (352)
..++|+|+|-++.++++.|++. |. ++.|+.|.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~ 160 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTH-GVQKLQVADLD 160 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCC
Confidence 4699999999999999999998 76 68899875
No 488
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.41 E-value=1.8 Score=40.96 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=29.8
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.|.|||+|.-|...|..|++. |.+|.++++..
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~-G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASK-GVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence 599999999999999999999 99999999853
No 489
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=82.30 E-value=1.4 Score=45.74 Aligned_cols=47 Identities=23% Similarity=0.446 Sum_probs=37.7
Q ss_pred ccccCceeEecchhhhhcCCCCCCc-chhhhhhchHHHHHHHHHHcCC
Q 039605 277 REIVPGMIVAGMEVAEIDGAPRMGP-TFGAMMISGQKAAHLALKSLGQ 323 (352)
Q Consensus 277 ~~~~pg~~~aG~~~~~~~g~~r~g~-~~~~~~~sG~~aA~~i~~~l~~ 323 (352)
.+.+||+|++|.+...++|.+|.+. ....++-.|++|++.+.++++.
T Consensus 402 ~t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~~~ 449 (626)
T PRK07803 402 AATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVRG 449 (626)
T ss_pred eeecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 3689999999998888899988764 3345567899999999988753
No 490
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.25 E-value=1.6 Score=43.16 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=29.3
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
-|+|||.|.+|+++|..|.+. |++|.+.|...
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~-G~~v~~~D~~~ 39 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQ-GIPFAVMDSRE 39 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhC-CCeEEEEeCCC
Confidence 589999999999999999999 99999999653
No 491
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=82.07 E-value=1.4 Score=45.22 Aligned_cols=45 Identities=27% Similarity=0.363 Sum_probs=35.8
Q ss_pred ccCceeEecchhh-hhcCCCCCCcc-hhhhhhchHHHHHHHHHHcCC
Q 039605 279 IVPGMIVAGMEVA-EIDGAPRMGPT-FGAMMISGQKAAHLALKSLGQ 323 (352)
Q Consensus 279 ~~pg~~~aG~~~~-~~~g~~r~g~~-~~~~~~sG~~aA~~i~~~l~~ 323 (352)
.+||+|++|.++. .++|.+|.+.. ...++-.|++|++.+.+++..
T Consensus 370 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~~~ 416 (577)
T PRK06069 370 WVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYALK 416 (577)
T ss_pred EeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 3999999999875 67888888643 345577899999999988753
No 492
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=81.90 E-value=2.2 Score=38.23 Aligned_cols=34 Identities=29% Similarity=0.549 Sum_probs=30.2
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCC-cEEEEeccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNV-QVAIIEQSV 140 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~-kV~viEk~~ 140 (352)
...|+|||+|..|...|..|++. |. +++|+|...
T Consensus 21 ~~~VlivG~GglGs~va~~La~~-Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAA-GVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCE
Confidence 45899999999999999999999 87 788998764
No 493
>PRK08017 oxidoreductase; Provisional
Probab=81.81 E-value=2 Score=38.42 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=29.1
Q ss_pred cEEEECC-cHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 108 DVVVVGA-GSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 108 DVvIIGg-G~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.++|.|+ |..|...|..|+++ |.+|+++.++.
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~-g~~v~~~~r~~ 36 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRR-GYRVLAACRKP 36 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 4999998 99999999999999 99999998763
No 494
>PRK07326 short chain dehydrogenase; Provisional
Probab=81.76 E-value=2.2 Score=37.72 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=28.9
Q ss_pred ccEEEECC-cHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 107 TDVVVVGA-GSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 107 ~DVvIIGg-G~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
.-++|+|| |..|...+.+|+++ |.+|+++.+.+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~-g~~V~~~~r~~ 40 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAE-GYKVAITARDQ 40 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC-CCEEEEeeCCH
Confidence 45899985 99999999999999 99999998753
No 495
>PRK09077 L-aspartate oxidase; Provisional
Probab=81.74 E-value=1.4 Score=44.72 Aligned_cols=54 Identities=22% Similarity=0.251 Sum_probs=40.5
Q ss_pred cceeecccccccCceeEecchh-hhhcCCCCCCc-chhhhhhchHHHHHHHHHHcC
Q 039605 269 EDAIVKLTREIVPGMIVAGMEV-AEIDGAPRMGP-TFGAMMISGQKAAHLALKSLG 322 (352)
Q Consensus 269 ~~~vv~~~~~~~pg~~~aG~~~-~~~~g~~r~g~-~~~~~~~sG~~aA~~i~~~l~ 322 (352)
.+.+....++.+||+|++|.++ ..++|.+|.+. ....++..|++|++.|.+++.
T Consensus 355 Gi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~~ 410 (536)
T PRK09077 355 GVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRLP 410 (536)
T ss_pred CeeECCCCccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhhc
Confidence 3344556678899999999987 46888888863 333456789999999988753
No 496
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=81.70 E-value=2.2 Score=39.60 Aligned_cols=33 Identities=21% Similarity=0.473 Sum_probs=29.1
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCC-cEEEEecc
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNV-QVAIIEQS 139 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~-kV~viEk~ 139 (352)
...++|||+|-++-++++.|++. |. +|+|+.|.
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~-G~~~i~I~nRt 158 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASL-GVTDITVINRN 158 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 34799999999999999999998 86 69999875
No 497
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=81.68 E-value=1.5 Score=44.31 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=38.7
Q ss_pred ecccccccCceeEecchhhhhcCCCCCC-cchhhhhhchHHHHHHHHHHcC
Q 039605 273 VKLTREIVPGMIVAGMEVAEIDGAPRMG-PTFGAMMISGQKAAHLALKSLG 322 (352)
Q Consensus 273 v~~~~~~~pg~~~aG~~~~~~~g~~r~g-~~~~~~~~sG~~aA~~i~~~l~ 322 (352)
++...+.+||+|++|.+...++|..+++ ...+.++-.|+.|++.+.++.+
T Consensus 454 ld~~g~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~~ 504 (506)
T PRK06481 454 LKKDGSPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEFAK 504 (506)
T ss_pred EcCCCCEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhhh
Confidence 3445678999999999887777776654 4455667789999999988764
No 498
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.60 E-value=1.8 Score=43.30 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=28.9
Q ss_pred cEEEECCcHHHHHHHHHHhcCCCCcEEEEecc
Q 039605 108 DVVVVGAGSAGLSCAYEISKNPNVQVAIIEQS 139 (352)
Q Consensus 108 DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~ 139 (352)
.|+|+|.|.+|+++|..|.+. |.+|.+.|+.
T Consensus 17 ~v~v~G~G~sG~a~a~~L~~~-G~~V~~~D~~ 47 (473)
T PRK00141 17 RVLVAGAGVSGRGIAAMLSEL-GCDVVVADDN 47 (473)
T ss_pred eEEEEccCHHHHHHHHHHHHC-CCEEEEECCC
Confidence 599999999999999999999 9999999964
No 499
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=81.56 E-value=2 Score=39.66 Aligned_cols=32 Identities=16% Similarity=0.430 Sum_probs=29.2
Q ss_pred ccEEEECCcHHHHHHHHHHhcCCC-CcEEEEecc
Q 039605 107 TDVVVVGAGSAGLSCAYEISKNPN-VQVAIIEQS 139 (352)
Q Consensus 107 ~DVvIIGgG~aGl~aA~~la~~~G-~kV~viEk~ 139 (352)
..++|+|+|-+|.+++..|++. | .+|+|+.|.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~-g~~~V~v~~R~ 156 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDL-GVAEITIVNRT 156 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence 4699999999999999999998 8 789999876
No 500
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=81.51 E-value=2.4 Score=38.53 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=31.1
Q ss_pred CccEEEECCcHHHHHHHHHHhcCCCCcEEEEeccC
Q 039605 106 DTDVVVVGAGSAGLSCAYEISKNPNVQVAIIEQSV 140 (352)
Q Consensus 106 ~~DVvIIGgG~aGl~aA~~la~~~G~kV~viEk~~ 140 (352)
...++|+|+|..+...|..+... |++|+|+|..+
T Consensus 100 ~~~L~IfGaG~va~~la~la~~l-Gf~V~v~D~R~ 133 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPL-PCRVTWVDSRE 133 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcC-CCEEEEEeCCc
Confidence 45899999999999999999999 99999999764
Done!