BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039607
(191 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 40/163 (24%)
Query: 20 TLDEYLVLANALEASNRPFIWVIQGGAG-----------RLDPLRHLNKPVEGSYFRSGL 68
T ++ LA L S + F+WVI+ +G + DPL ++ G
Sbjct: 282 TCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPL---------TFLPPGF 332
Query: 69 DNKVGETGG--PEWAPTVEDTFKPVPQLRLIPARTG-LAHKG-----ETIGCQVPILAWP 120
+ + G P WAP Q+ P+ G L H G E++ +P++AWP
Sbjct: 333 LERTKKRGFVIPFWAPQA--------QVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWP 384
Query: 121 IRGDQHYNAKFVINHLKDDIVSGIEKLMSDQEIKKRAHILRSI 163
+ +Q NA L +DI + + D + +R + R +
Sbjct: 385 LYAEQKMNAVL----LSEDIRAALRPRAGDDGLVRREEVARVV 423
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 15/118 (12%)
Query: 20 TLDEYLVLANALEASNRPFIWVIQGGAGRLDPLRHLNKPVEGSY-FRSGLDNKVGETGG- 77
T ++ L A L + F+W+I R D + + GS F S N++ + G
Sbjct: 309 TPEQLLEFAWGLANCKKSFLWII-----RPDLV------IGGSVIFSSEFTNEIADRGLI 357
Query: 78 PEWAPTVEDTFKPVPQLRLIPARTGLAHKGETIGCQVPILAWPIRGDQHYNAKFVINH 135
W P +D P + G E+I VP+L WP DQ + +F+ N
Sbjct: 358 ASWCP--QDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNE 413
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 62/157 (39%), Gaps = 27/157 (17%)
Query: 19 PTLDEYLVLANALEASNRPFIWVIQGGAGRLDPLRHLNKPVEGSYFRSGLDNKVGETGGP 78
P E + L+ ALEAS PFIW ++ A P EG L+ G
Sbjct: 284 PPPAEVVALSEALEASRVPFIWSLRDKARVHLP--------EGF-----LEKTRGYGMVV 330
Query: 79 EWAPTVEDTFKPVPQLRLIPARTGLAHKGETIGCQVPILAWPIRGDQHYNAKFVINHL-- 136
WAP E + G E++ VP++ P GDQ N + V + L
Sbjct: 331 PWAPQAEVLAHEA--VGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEI 388
Query: 137 ----------KDDIVSGIEKLMSDQEIKKRAHILRSI 163
K ++S ++++S ++ KK LR++
Sbjct: 389 GVRIEGGVFTKSGLMSCFDQILSQEKGKKLRENLRAL 425
>pdb|2R82|A Chain A, Pyruvate Phosphate Dikinase (Ppdk) Triple Mutant
R219eE271RS262D Adapts A Second Conformational State
Length = 874
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 103 LAHKGETIGCQVPILAWPIRGDQHYNAKFVINHLKDDIVSGI 144
+KGET G V P G++ +++IN +D+V+G+
Sbjct: 244 FGNKGETSGTGVAFTRNPDTGEKGIYGRYLINAQGEDVVAGV 285
>pdb|2DIK|A Chain A, R337a Mutant Of Pyruvate Phosphate Dikinase
Length = 873
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 103 LAHKGETIGCQVPILAWPIRGDQHYNAKFVINHLKDDIVSGI 144
+KGET G V P G++ +++IN +D+V+G+
Sbjct: 243 FGNKGETSGTGVAFTRNPSTGEKGIYGEYLINAQGEDVVAGV 284
>pdb|1JDE|A Chain A, K22a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 103 LAHKGETIGCQVPILAWPIRGDQHYNAKFVINHLKDDIVSGI 144
+KGET G V P G++ +++IN +D+V+G+
Sbjct: 243 FGNKGETSGTGVAFTRNPSTGEKGIYGEYLINAQGEDVVAGV 284
>pdb|1KBL|A Chain A, Pyruvate Phosphate Dikinase
pdb|1KC7|A Chain A, Pyruvate Phosphate Dikinase With Bound
Mg-Phosphonopyruvate
Length = 873
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 103 LAHKGETIGCQVPILAWPIRGDQHYNAKFVINHLKDDIVSGI 144
+KGET G V P G++ +++IN +D+V+G+
Sbjct: 243 FGNKGETSGTGVAFTRNPSTGEKGIYGEYLINAQGEDVVAGV 284
>pdb|1DIK|A Chain A, Pyruvate Phosphate Dikinase
Length = 874
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 103 LAHKGETIGCQVPILAWPIRGDQHYNAKFVINHLKDDIVSGI 144
+KGET G V P G++ +++IN +D+V+G+
Sbjct: 244 FGNKGETSGTGVAFTRNPSTGEKGIYGEYLINAQGEDVVAGV 285
>pdb|1GGO|A Chain A, T453a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 103 LAHKGETIGCQVPILAWPIRGDQHYNAKFVINHLKDDIVSGI 144
+KGET G V P G++ +++IN +D+V+G+
Sbjct: 243 FGNKGETSGTGVAFTRNPSTGEKGIYGEYLINAQGEDVVAGV 284
>pdb|3DC8|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
pdb|3DC8|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
Length = 490
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 28/137 (20%)
Query: 28 ANALEASNRPFIWVIQGGAGRLDPLRHLNKPVEGSY----FRSGLDNKVGETGGPEWAPT 83
A L+A+ +V+ GG +DP HL P G+Y F SG + GG
Sbjct: 38 AETLDATG---CYVMPGG---IDPHTHLEMPFMGTYSSDDFESG--TRAALAGG---TTM 86
Query: 84 VEDTFKPVPQLRLIPARTGLAHKGETIGCQVPILAWPIRGDQHYNAKFVINHLKDDIVSG 143
V D P P L+ A T +K C Y+ I + + +
Sbjct: 87 VVDFALPSPGQSLLEALTMWDNKSTRANCD-------------YSFHMAITWWGEQVFNE 133
Query: 144 IEKLMSDQEIKKRAHIL 160
+E ++ D+ I H +
Sbjct: 134 METIVKDKGINTFXHFM 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,107,433
Number of Sequences: 62578
Number of extensions: 271209
Number of successful extensions: 591
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 582
Number of HSP's gapped (non-prelim): 13
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)