BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039609
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 109/216 (50%), Gaps = 5/216 (2%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
M KS+GN ++P LV FG D VRYF L+EV FG DG Y+ED I VNA LAN +GNL
Sbjct: 311 MSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLA 370
Query: 61 NRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISN 120
R+L ++ KN + + E TA + L+E R H++ ++ A EA+ +
Sbjct: 371 QRSLSMVAKNLGAAVPDPGEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLG 430
Query: 121 AGNSYMDEHVPWSRFKQGGAASEAAAKD-LVIILEAMRIIAVALSPVTPNLCWRIYEQLG 179
A N Y PW K A + + L LE +RI ++ L PV P ++ + LG
Sbjct: 431 AANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLG 490
Query: 180 YSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIE 215
++ +A ++ +K G + P +F R +
Sbjct: 491 QPTDERDFSAIANR----IKPGTSLPAPSGIFPRYQ 522
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 6/213 (2%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
M KS+GN ++P ELV +G D +RYF ++EV FG DG YS + + NA LAN +GNL
Sbjct: 322 MSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLA 381
Query: 61 NRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISN 120
R+L ++ KNC+ + A + A D + +ETAR ++ +L A A+ +
Sbjct: 382 QRSLSMIAKNCEGKVPQPGAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVVA 441
Query: 121 AGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGY 180
N Y PW+ K A L + E +R + + + P P ++ + L
Sbjct: 442 EANRYFAGQEPWALRKTDPARMGTV---LYVTAEVLRRVGIMVQPFIPQSAEKLLDILAV 498
Query: 181 SNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGR 213
++ ++D L GG + P+PVF R
Sbjct: 499 PADK---RQFADVLASPLAGGTDLPAPQPVFPR 528
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 7/169 (4%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
M K+LGN ++P E+V +G D VRYF L+EV FG DGD+S+ + +N LAN IGNL
Sbjct: 296 MSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLY 355
Query: 61 NRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISN 120
+R + N + A + ++ ++ + E ++ A E +L ++
Sbjct: 356 SRVV-----NMAHKFLGGEVSGARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFTS 410
Query: 121 AGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPN 169
N Y+DE PW+ K+ E K L +++ + ++ L P+TPN
Sbjct: 411 YLNKYVDEKQPWALNKE--RKKEELQKVLYALVDGLFVLTHLLYPITPN 457
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 88/179 (49%), Gaps = 4/179 (2%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
+ KSLGN +P E FG DA++YF L+E F +DGDYS+ I +N LA+T+GNL+
Sbjct: 324 ISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLV 383
Query: 61 NRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISN 120
R K N +A E + ++ L TA +Y + A AV D+
Sbjct: 384 MRCTS-AKINVNGEWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLR 442
Query: 121 AGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLG 179
A N+Y+ + PW K E L I LE +R+ + LSP+ P I++ LG
Sbjct: 443 AINAYVTDMAPWKLVKTD---PERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLG 498
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 88/179 (49%), Gaps = 4/179 (2%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
+ KSLGN +P E FG DA++YF L+E F +DGDYS+ I +N LA+T+GNL+
Sbjct: 324 ISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLV 383
Query: 61 NRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISN 120
R K N +A E + ++ L TA +Y + A AV D+
Sbjct: 384 MRCTS-AKINVNGEWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLR 442
Query: 121 AGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLG 179
A N+Y+ + PW K E L I LE +R+ + LSP+ P I++ LG
Sbjct: 443 AINAYVTDMAPWKLVKTD---PERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLG 498
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 88/179 (49%), Gaps = 4/179 (2%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
+ KSLGN +P E FG DA++YF L+E F +DGDYS+ I +N LA+T+GNL+
Sbjct: 324 ISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLV 383
Query: 61 NRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISN 120
R K N +A E + ++ L TA +Y + A AV D+
Sbjct: 384 MRCTS-AKINVNGEWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLR 442
Query: 121 AGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLG 179
A N+Y+ + PW K E L I LE +R+ + LSP+ P I++ LG
Sbjct: 443 AINAYVTDMAPWKLVKTD---PERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLG 498
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 99/212 (46%), Gaps = 22/212 (10%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
M K+LGN ++P L+ +G DA+RY+ L+E+ +G D SE+ A LA+ +GNL+
Sbjct: 298 MSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLV 357
Query: 61 NRTLGLLKKNCQSTL--VVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDI 118
RT +L + + + V AEGT + LV L A E +
Sbjct: 358 QRTRAMLFRFAEGRIPEPVAGEELAEGTGLAGRLRPLV-------RELKFHVALEEAMAY 410
Query: 119 SNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQL 178
A N Y++E PW FK+ E A L ++E +RI ++ L+P P+ + L
Sbjct: 411 VKALNRYINEKKPWELFKK---EPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRAL 467
Query: 179 GYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPV 210
G E A +WG +A+P+P+
Sbjct: 468 GLKEEVRLEEA---ERWG-------LAEPRPI 489
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 100/212 (47%), Gaps = 22/212 (10%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
M K+LGN ++P L+ +G DA+RY+ L+E+ +G D SE+ A LA+ +GNL+
Sbjct: 298 MSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLV 357
Query: 61 NRTLGLLKKNCQSTL--VVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDI 118
RT +L + + + V AEGT + LV + H A E +
Sbjct: 358 QRTRAMLFRFAEGRIPEPVAGEELAEGTGLAGRLRPLVRELKFH-------VALEEAMAY 410
Query: 119 SNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQL 178
A N Y++E PW FK+ E A L ++E +RI ++ L+P P+ + L
Sbjct: 411 VKALNRYINEKKPWELFKK---EPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRAL 467
Query: 179 GYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPV 210
G E A +WG +A+P+P+
Sbjct: 468 GLKEEVRLEEA---ERWG-------LAEPRPI 489
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 100/212 (47%), Gaps = 22/212 (10%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
M K+LGN ++P L+ +G DA+RY+ L+E+ +G D SE+ A LA+ +GNL+
Sbjct: 298 MSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLV 357
Query: 61 NRTLGLLKKNCQSTL--VVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDI 118
RT +L + + + V AEGT + LV + H A E +
Sbjct: 358 QRTRAMLFRFAEGRIPEPVAGEELAEGTGLAGRLRPLVRELKFH-------VALEEAMAY 410
Query: 119 SNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQL 178
A N Y++E PW FK+ E A L ++E +RI ++ L+P P+ + L
Sbjct: 411 VKALNRYINEKKPWELFKK---EPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRAL 467
Query: 179 GYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPV 210
G E A +WG +A+P+P+
Sbjct: 468 GLKEEVRLEEA---ERWG-------LAEPRPI 489
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 102/226 (45%), Gaps = 19/226 (8%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
+ KSLGN +P E FG DA++YF ++E F +DGDYS+ + +N LA+T+GNL+
Sbjct: 340 ISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLV 399
Query: 61 NRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISN 120
+R + K N + + ++ L T +Y + A A+ D+
Sbjct: 400 SRCVA-PKINVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLR 458
Query: 121 AGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQL-- 178
+ N+Y+ E+ PW K A L + +E +RI + L PV P I + L
Sbjct: 459 SLNAYVTENAPWKLVKMDTARLGTV---LYVTMEGLRICTMFLQPVMPQKAKEIMDALGV 515
Query: 179 ------GYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIELKT 218
G N FG TK GL GQV VF ++ L T
Sbjct: 516 PEAARVGMENYLFGIVK-PGTKIAGLAEGQV------VFQKVTLPT 554
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 20/221 (9%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFG-NDGDYSEDRFIKIVNAHLANTIGNL 59
M KS G ++ + +++F +D++RY++ ++ +D D + + F++ VNA + N + NL
Sbjct: 333 MSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNL 392
Query: 60 LNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDIS 119
+R G + K L + A A F D E + E +E+ A ++ ++
Sbjct: 393 ASRNAGFINKRFDGVLASELADPALYKTFTDAAEVIGEA----WESREFGKAVREIMALA 448
Query: 120 NAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLG 179
+ N Y+DE PW KQ G ++ A + + R++ L PV P L R
Sbjct: 449 DLANRYVDEQAPWVVAKQAGRDADLQAI-CSMGINLFRVLMTYLKPVLPKLTERA----- 502
Query: 180 YSNEQFGNAAWSDTKWGGLKG---GQVMAQPKPVFGRIELK 217
E F N ++ W G++ G + K ++ RI+++
Sbjct: 503 ---EAFLN---TELTWDGIQQPLLGHKVNPFKALYNRIDMR 537
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 20/221 (9%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFG-NDGDYSEDRFIKIVNAHLANTIGNL 59
M KS G ++ + +++F +D++RY++ ++ +D D + + F++ VNA + N + NL
Sbjct: 333 MSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNL 392
Query: 60 LNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDIS 119
+R G + K L + A F D E + E +E+ A ++ ++
Sbjct: 393 ASRNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEA----WESREFGKAVREIMALA 448
Query: 120 NAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLG 179
+ N Y+DE PW KQ G ++ A + + R++ L PV P L R
Sbjct: 449 DLANRYVDEQAPWVVAKQEGRDADLQAI-CSMGINLFRVLMTYLKPVLPKLTERA----- 502
Query: 180 YSNEQFGNAAWSDTKWGGLKG---GQVMAQPKPVFGRIELK 217
E F N ++ W G++ G + K ++ RI+++
Sbjct: 503 ---EAFLN---TELTWDGIQQPLLGHKVNPFKALYNRIDMR 537
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 20/221 (9%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFG-NDGDYSEDRFIKIVNAHLANTIGNL 59
M KS G ++ + +++F +D++RY++ ++ +D D + + F++ VNA + N + NL
Sbjct: 346 MSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNL 405
Query: 60 LNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDIS 119
+R G + K L + A F D E + E +E+ A ++ ++
Sbjct: 406 ASRNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEA----WESREFGKAVREIMALA 461
Query: 120 NAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLG 179
+ N Y+DE PW KQ G ++ A + + R++ L PV P L R
Sbjct: 462 DLANRYVDEQAPWVVAKQEGRDADLQAI-CSMGINLFRVLMTYLKPVLPKLTERA----- 515
Query: 180 YSNEQFGNAAWSDTKWGGLKG---GQVMAQPKPVFGRIELK 217
E F N ++ W G++ G + K ++ RI+++
Sbjct: 516 ---EAFLN---TELTWDGIQQPLLGHKVNPFKALYNRIDMR 550
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 20/221 (9%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFG-NDGDYSEDRFIKIVNAHLANTIGNL 59
M KS G ++ + +++F +D++RY++ ++ +D D + + F++ VNA + N + NL
Sbjct: 334 MSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNL 393
Query: 60 LNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDIS 119
+R G + K L + A F D E + E +E+ A ++ ++
Sbjct: 394 ASRNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEA----WESREFGKAVREIMALA 449
Query: 120 NAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLG 179
+ N Y+DE PW KQ G ++ A + + R++ L PV P L R
Sbjct: 450 DLANRYVDEQAPWVVAKQEGRDADLQAI-CSMGINLFRVLMTYLKPVLPKLTERA----- 503
Query: 180 YSNEQFGNAAWSDTKWGGLKG---GQVMAQPKPVFGRIELK 217
E F N ++ W G++ G + K ++ RI+++
Sbjct: 504 ---EAFLN---TELTWDGIQQPLLGHKVNPFKALYNRIDMR 538
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 20/221 (9%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFG-NDGDYSEDRFIKIVNAHLANTIGNL 59
M KS G ++ + +++F +D++RY++ ++ +D D + + F++ VNA + N + NL
Sbjct: 333 MSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNL 392
Query: 60 LNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDIS 119
+R G + K L + A F D E + E +E+ A ++ ++
Sbjct: 393 ASRNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEA----WESREFGKAVREIMALA 448
Query: 120 NAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLG 179
+ N Y+DE PW KQ G ++ A + + R++ L PV P L R
Sbjct: 449 DLANRYVDEQAPWVVAKQEGRDADLQAI-CSMGINLFRVLMTYLKPVLPKLTERA----- 502
Query: 180 YSNEQFGNAAWSDTKWGGLKG---GQVMAQPKPVFGRIELK 217
E F N ++ W G++ G + K ++ RI+++
Sbjct: 503 ---EAFLN---TELTWDGIQQPLLGHKVNPFKALYNRIDMR 537
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 84/209 (40%), Gaps = 22/209 (10%)
Query: 12 NELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNC 71
+E + F +D +RY+ + D D+S F +N L N +GN ++R L + +
Sbjct: 356 HEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNR-- 413
Query: 72 QSTLVVDSAVAAEGTAFKDTVEKLVETARGHYE------NLSLSSACEAVLDISNAGNSY 125
D V G + E L E + E N A + V+ +++ GN Y
Sbjct: 414 ----YFDGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRY 469
Query: 126 MDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGYSNEQF 185
D PW K+ + I L+ ++ + + L P P+ +I+ L +
Sbjct: 470 FDHKQPWKTAKEDKVRTGTTVN---ISLQIVKALGILLEPFLPDASEKIWHLLNLDEVK- 525
Query: 186 GNAAWSDTKWGGLKGGQVMAQPKPVFGRI 214
W ++ L G + +P+ +F ++
Sbjct: 526 ---RW---EFRELPAGHKVRKPEILFKKV 548
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 27/199 (13%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGN-- 58
M KS GN ++P E+V +G+DA+R+ + G D + R++++ + AN + N
Sbjct: 529 MSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRL-DLRWLEMAR-NFANKLYNAA 586
Query: 59 ---LLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAV 115
LL+R G K TL + + + VE YE L L+ A V
Sbjct: 587 RFVLLSRE-GFQAKEDTPTLA--------DRFMRSRLSRGVEEITALYEALDLAQAAREV 637
Query: 116 LDI--SNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWR 173
++ S + Y++ P K G A + L + E + ++ L P+ P L
Sbjct: 638 YELVWSEFCDWYLEAAKP--ALKAGNAHT------LRTLEEVLAVLLKLLHPMMPFLTSE 689
Query: 174 IYEQLGYSNEQFGNAAWSD 192
+Y+ L E+ AW +
Sbjct: 690 LYQALT-GKEELALEAWPE 707
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 80/200 (40%), Gaps = 42/200 (21%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFL------KEVEFGNDGDYSEDRFI----KIVNA 50
M KS N ++P +V +G+D VR F + +E+ G +RF+ K+V
Sbjct: 640 MSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYE 699
Query: 51 HLANTIGNLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSS 110
H A K + L VD+ + +D + + + + ++
Sbjct: 700 HTA---------------KGDVAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNT 744
Query: 111 ACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNL 170
A A++++ N + A +D ++ EA+ + L+P TP++
Sbjct: 745 AIAAIMELMN----------------KLAKAPTDGEQDRALMQEALLAVVRMLNPFTPHI 788
Query: 171 CWRIYEQLGYSNEQFGNAAW 190
C+ ++++L + NA W
Sbjct: 789 CFTLWQELKGEGD-IDNAPW 807
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYF 26
M KSLGN + P+E++ NFG+D +R +
Sbjct: 411 MSKSLGNVVNPDEIIQNFGADTLRVY 436
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYF 26
M KS GN ++P +++ FG+DA+R++
Sbjct: 592 MSKSKGNVVDPWDIIRKFGADALRWY 617
>pdb|3FNR|A Chain A, Crystal Structure Of Putative Arginyl T-Rna Synthetase
From Campylobacter Jejuni
Length = 464
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFL 28
M K GN + +++V GSDA+RY FL
Sbjct: 286 MSKRAGNFILMSDVVDEIGSDALRYIFL 313
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 18/136 (13%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANT----- 55
M KSLGN + P+++V G+D R + + DY D ++I + L T
Sbjct: 596 MSKSLGNVIVPDQVVKQKGADIARLWV-------SSTDYLAD--VRISDEILKQTSDDYR 646
Query: 56 -IGNLLNRTLGLLKK-NCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACE 113
I N L LG + N + + +S + + + + + +YEN + +
Sbjct: 647 KIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQ 706
Query: 114 AVLDISNA--GNSYMD 127
V + N N Y+D
Sbjct: 707 EVQNFINVELSNFYLD 722
>pdb|3DC0|A Chain A, Crystal Structure Of Native Alpha-Amylase From Bacillus
Sp. Kr-8104
Length = 422
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 13 ELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
E N G+D RY K +E +DG+Y + I N G +L
Sbjct: 160 ERALNDGADGFRYDAAKHIELPDDGNYGSQFWPNITNTSAEFQYGEIL 207
>pdb|2DDM|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.1 A Resolution
pdb|2DDM|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.1 A Resolution
pdb|2DDO|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.6 A Resolution
pdb|2DDO|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.6 A Resolution
pdb|2DDW|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene Complexed With Pyridoxal At 3.2 A
Resolution
pdb|2DDW|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene Complexed With Pyridoxal At 3.2 A
Resolution
Length = 283
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 18/105 (17%)
Query: 66 LLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVET-ARGHYEN------------LSLSSAC 112
L KNC+ +DSA+AA + DT++ +V T A G+ EN +++ S
Sbjct: 166 LTGKNCRD---LDSAIAAAKSLLSDTLKWVVVTSASGNEENQEMQVVVVTADSVNVISHS 222
Query: 113 EAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMR 157
D+ G+ + + + S +G A ++A + + +LE MR
Sbjct: 223 RVKTDLKGTGDLFCAQLI--SGLLKGKALTDAVHRAGLRVLEVMR 265
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,058,280
Number of Sequences: 62578
Number of extensions: 282788
Number of successful extensions: 606
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 564
Number of HSP's gapped (non-prelim): 33
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)