Query 039609
Match_columns 248
No_of_seqs 272 out of 2206
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 11:22:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039609.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039609hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02224 methionine-tRNA ligas 100.0 2.1E-45 4.6E-50 344.4 22.2 220 1-220 367-586 (616)
2 COG0143 MetG Methionyl-tRNA sy 100.0 5.7E-45 1.2E-49 335.5 21.0 220 1-224 334-554 (558)
3 PLN02610 probable methionyl-tR 100.0 1E-44 2.2E-49 348.6 22.4 215 1-221 349-579 (801)
4 PRK12267 methionyl-tRNA synthe 100.0 8E-43 1.7E-47 332.4 20.7 213 1-217 300-513 (648)
5 PRK00133 metG methionyl-tRNA s 100.0 1.8E-40 3.9E-45 316.9 21.6 208 1-222 330-538 (673)
6 PRK12268 methionyl-tRNA synthe 100.0 8.9E-39 1.9E-43 300.3 21.6 214 1-222 335-548 (556)
7 PRK11893 methionyl-tRNA synthe 100.0 1.1E-37 2.5E-42 290.3 23.5 212 1-217 300-511 (511)
8 TIGR00398 metG methionyl-tRNA 100.0 2.2E-37 4.8E-42 289.4 22.9 203 1-215 328-530 (530)
9 KOG1247 Methionyl-tRNA synthet 100.0 6.6E-37 1.4E-41 265.5 12.5 221 1-235 344-565 (567)
10 KOG0436 Methionyl-tRNA synthet 100.0 3E-35 6.5E-40 255.6 17.0 191 1-191 345-538 (578)
11 PRK14900 valS valyl-tRNA synth 100.0 3.9E-31 8.5E-36 261.9 19.8 173 1-180 539-715 (1052)
12 COG0525 ValS Valyl-tRNA synthe 100.0 1.2E-30 2.6E-35 247.7 18.7 173 1-181 526-700 (877)
13 TIGR00422 valS valyl-tRNA synt 100.0 1.8E-30 3.9E-35 254.4 19.2 173 1-181 526-701 (861)
14 PRK05729 valS valyl-tRNA synth 100.0 1.7E-30 3.7E-35 254.7 18.7 172 1-181 521-694 (874)
15 PLN02882 aminoacyl-tRNA ligase 100.0 4.3E-30 9.3E-35 255.7 19.6 176 1-180 615-801 (1159)
16 PRK13804 ileS isoleucyl-tRNA s 100.0 5.1E-30 1.1E-34 252.3 19.1 175 1-180 631-808 (961)
17 PLN02943 aminoacyl-tRNA ligase 100.0 1.2E-29 2.7E-34 249.5 19.9 174 1-181 584-772 (958)
18 PTZ00419 valyl-tRNA synthetase 100.0 1.3E-29 2.7E-34 251.2 18.7 175 1-180 586-805 (995)
19 PRK06039 ileS isoleucyl-tRNA s 100.0 7.5E-29 1.6E-33 244.9 20.3 174 1-180 593-772 (975)
20 PRK13208 valS valyl-tRNA synth 100.0 4.7E-29 1E-33 242.8 18.5 170 1-179 534-705 (800)
21 TIGR00392 ileS isoleucyl-tRNA 100.0 1.5E-28 3.2E-33 241.1 19.4 174 1-181 612-792 (861)
22 PLN02843 isoleucyl-tRNA synthe 100.0 1.5E-28 3.2E-33 242.0 18.6 173 1-180 612-797 (974)
23 PLN02381 valyl-tRNA synthetase 100.0 1.6E-28 3.4E-33 243.2 18.8 175 1-179 656-871 (1066)
24 COG0060 IleS Isoleucyl-tRNA sy 100.0 7.8E-29 1.7E-33 237.8 15.4 176 1-181 603-781 (933)
25 PRK05743 ileS isoleucyl-tRNA s 100.0 1.3E-28 2.8E-33 241.7 16.6 171 1-179 593-769 (912)
26 PTZ00427 isoleucine-tRNA ligas 100.0 6.7E-28 1.5E-32 239.7 19.2 176 1-180 721-906 (1205)
27 PRK12300 leuS leucyl-tRNA synt 100.0 2.5E-27 5.5E-32 232.3 18.3 156 1-182 578-734 (897)
28 TIGR00395 leuS_arch leucyl-tRN 99.9 6.2E-27 1.3E-31 230.5 19.4 159 1-182 621-780 (938)
29 KOG0432 Valyl-tRNA synthetase 99.9 1E-25 2.3E-30 210.6 16.8 170 1-180 594-808 (995)
30 PRK00390 leuS leucyl-tRNA synt 99.9 2.3E-25 5.1E-30 216.3 18.6 154 1-181 571-724 (805)
31 TIGR00396 leuS_bact leucyl-tRN 99.9 4.8E-25 1E-29 214.7 18.4 155 1-181 605-760 (842)
32 PLN02563 aminoacyl-tRNA ligase 99.9 1.5E-24 3.3E-29 212.3 17.3 153 1-181 724-876 (963)
33 cd07957 Anticodon_Ia_Met Antic 99.9 4.9E-24 1.1E-28 163.0 14.1 128 49-178 2-129 (129)
34 COG0495 LeuS Leucyl-tRNA synth 99.9 2.6E-23 5.7E-28 198.2 17.3 153 1-181 580-734 (814)
35 KOG0433 Isoleucyl-tRNA synthet 99.9 3.8E-23 8.3E-28 190.4 15.8 184 1-192 614-809 (937)
36 PLN02959 aminoacyl-tRNA ligase 99.9 9.1E-23 2E-27 202.9 18.6 160 1-180 719-880 (1084)
37 cd07959 Anticodon_Ia_Leu_AEc A 99.8 6.8E-20 1.5E-24 137.9 13.6 114 50-178 3-117 (117)
38 KOG0435 Leucyl-tRNA synthetase 99.8 1E-19 2.2E-24 166.7 15.9 160 1-181 618-782 (876)
39 PTZ00399 cysteinyl-tRNA-synthe 99.8 2.1E-18 4.7E-23 163.6 17.3 121 1-127 316-437 (651)
40 KOG0434 Isoleucyl-tRNA synthet 99.8 1E-18 2.2E-23 160.4 14.0 175 1-180 602-785 (1070)
41 cd07960 Anticodon_Ia_Ile_BEm A 99.8 2.5E-17 5.3E-22 133.6 16.5 138 39-180 1-141 (180)
42 cd07962 Anticodon_Ia_Val Antic 99.8 1.9E-17 4.1E-22 128.1 15.1 132 39-178 1-135 (135)
43 cd07958 Anticodon_Ia_Leu_BEm A 99.7 2.2E-17 4.8E-22 123.9 12.3 109 54-178 7-117 (117)
44 PRK00260 cysS cysteinyl-tRNA s 99.7 2.3E-16 4.9E-21 145.3 15.5 109 1-128 267-376 (463)
45 cd07961 Anticodon_Ia_Ile_ABEc 99.7 8.7E-16 1.9E-20 124.8 15.2 138 39-180 1-142 (183)
46 TIGR00456 argS arginyl-tRNA sy 99.6 1.4E-15 3E-20 143.3 13.3 127 1-129 373-526 (566)
47 PF08264 Anticodon_1: Anticodo 99.6 8E-16 1.7E-20 121.1 9.6 90 85-178 1-92 (153)
48 PF09334 tRNA-synt_1g: tRNA sy 99.6 3.8E-17 8.1E-22 147.3 1.4 64 1-64 328-391 (391)
49 COG0215 CysS Cysteinyl-tRNA sy 99.6 1.2E-14 2.6E-19 130.8 11.0 108 1-128 269-377 (464)
50 KOG0437 Leucyl-tRNA synthetase 99.6 3E-15 6.5E-20 138.8 7.2 162 1-183 711-873 (1080)
51 PLN02946 cysteine-tRNA ligase 99.6 1.1E-14 2.5E-19 135.1 11.1 120 1-128 324-444 (557)
52 TIGR00435 cysS cysteinyl-tRNA 99.5 5.2E-14 1.1E-18 129.6 12.5 109 1-123 266-375 (465)
53 PRK14535 cysS cysteinyl-tRNA s 99.5 1.9E-13 4.2E-18 128.2 12.7 104 1-125 509-613 (699)
54 cd07375 Anticodon_Ia_like Anti 99.5 4.7E-13 1E-17 99.8 12.4 108 54-167 8-117 (117)
55 PRK12418 cysteinyl-tRNA synthe 99.5 8.1E-14 1.7E-18 124.6 8.2 102 1-129 262-365 (384)
56 PRK14536 cysS cysteinyl-tRNA s 99.5 6.6E-13 1.4E-17 122.0 12.8 118 1-124 280-404 (490)
57 KOG2007 Cysteinyl-tRNA synthet 99.5 1.2E-12 2.5E-17 117.4 13.7 122 1-130 306-428 (586)
58 PRK01611 argS arginyl-tRNA syn 99.4 1.7E-12 3.8E-17 121.0 13.4 127 1-129 323-468 (507)
59 TIGR03447 mycothiol_MshC cyste 99.4 3.7E-13 8.1E-18 120.9 8.1 97 1-124 289-387 (411)
60 PRK14534 cysS cysteinyl-tRNA s 99.4 4.3E-12 9.4E-17 116.2 12.8 117 1-125 280-398 (481)
61 PRK12451 arginyl-tRNA syntheta 99.0 4.9E-09 1.1E-13 98.9 13.4 128 1-130 372-525 (562)
62 COG0018 ArgS Arginyl-tRNA synt 98.8 1.4E-07 3E-12 88.8 14.0 128 1-130 384-538 (577)
63 cd00674 LysRS_core_class_I cat 98.7 2.8E-08 6E-13 88.3 6.8 43 1-43 276-318 (353)
64 PLN02286 arginine-tRNA ligase 98.7 6.8E-07 1.5E-11 84.7 15.4 127 1-129 379-539 (576)
65 TIGR00467 lysS_arch lysyl-tRNA 98.6 9.3E-08 2E-12 89.0 7.1 46 1-48 275-320 (515)
66 PRK00750 lysK lysyl-tRNA synth 98.5 1.3E-07 2.8E-12 88.3 6.6 41 1-41 281-321 (510)
67 cd07956 Anticodon_Ia_Arg Antic 98.1 0.00011 2.4E-09 58.0 13.0 111 17-129 2-117 (156)
68 COG1384 LysS Lysyl-tRNA synthe 97.8 9E-05 1.9E-09 67.9 9.0 42 1-43 278-319 (521)
69 PF01921 tRNA-synt_1f: tRNA sy 97.6 2.6E-05 5.6E-10 69.1 1.9 45 1-46 283-328 (360)
70 PF05746 DALR_1: DALR anticodo 95.0 0.74 1.6E-05 34.0 11.2 71 60-130 5-80 (119)
71 PF09190 DALR_2: DALR domain; 93.9 0.29 6.3E-06 32.2 6.1 27 98-124 1-28 (63)
72 smart00836 DALR_1 DALR anticod 92.1 3.4 7.4E-05 30.6 10.5 48 83-130 36-83 (122)
73 smart00840 DALR_2 This DALR do 91.5 0.22 4.8E-06 31.7 2.9 29 99-127 2-31 (56)
74 KOG1195 Arginyl-tRNA synthetas 89.7 7 0.00015 36.5 11.7 127 1-129 368-528 (567)
75 cd07963 Anticodon_Ia_Cys Antic 85.1 1.7 3.7E-05 34.0 4.6 35 93-127 32-67 (156)
76 PRK04156 gltX glutamyl-tRNA sy 84.6 1.6 3.4E-05 41.7 4.8 53 1-54 339-407 (567)
77 PRK01233 glyS glycyl-tRNA synt 82.3 17 0.00038 35.6 11.0 76 54-129 569-647 (682)
78 COG0751 GlyS Glycyl-tRNA synth 81.5 19 0.00042 35.1 10.7 72 58-129 582-656 (691)
79 TIGR00211 glyS glycyl-tRNA syn 76.3 32 0.00069 33.8 10.7 76 54-129 579-657 (691)
80 cd07955 Anticodon_Ia_Cys_like 74.0 8 0.00017 26.8 4.5 29 94-122 28-57 (81)
81 PRK14908 glycyl-tRNA synthetas 66.8 62 0.0013 33.2 10.5 74 54-129 894-967 (1000)
82 cd00395 Tyr_Trp_RS_core cataly 65.8 15 0.00033 31.6 5.5 29 1-29 199-238 (273)
83 TIGR00233 trpS tryptophanyl-tR 63.1 11 0.00025 33.4 4.3 24 1-29 193-217 (328)
84 TIGR00464 gltX_bact glutamyl-t 60.6 14 0.0003 34.6 4.5 48 1-51 242-314 (470)
85 cd00805 TyrRS_core catalytic c 49.3 18 0.00038 31.1 3.1 26 1-29 196-221 (269)
86 PLN03233 putative glutamate-tR 46.9 40 0.00087 32.0 5.2 49 1-49 247-311 (523)
87 PF00750 tRNA-synt_1d: tRNA sy 46.5 12 0.00026 33.6 1.6 24 1-24 289-312 (354)
88 cd00808 GluRS_core catalytic c 43.0 49 0.0011 28.0 4.7 28 1-29 163-191 (239)
89 PLN02486 aminoacyl-tRNA ligase 42.8 2E+02 0.0043 26.2 8.9 24 1-29 266-290 (383)
90 PRK05912 tyrosyl-tRNA syntheta 41.9 13 0.00028 34.1 1.1 27 1-29 233-259 (408)
91 PRK13354 tyrosyl-tRNA syntheta 41.4 9.7 0.00021 34.9 0.3 27 1-29 231-257 (410)
92 PRK12556 tryptophanyl-tRNA syn 40.9 18 0.00039 32.2 1.9 11 1-11 203-213 (332)
93 PRK12284 tryptophanyl-tRNA syn 40.7 17 0.00037 33.5 1.7 12 1-12 203-214 (431)
94 PTZ00126 tyrosyl-tRNA syntheta 39.5 86 0.0019 28.5 6.0 24 1-29 258-282 (383)
95 COG0180 TrpS Tryptophanyl-tRNA 39.1 11 0.00024 33.2 0.3 11 1-11 199-210 (314)
96 PF00579 tRNA-synt_1b: tRNA sy 38.3 12 0.00026 32.4 0.3 13 1-13 199-212 (292)
97 PRK05347 glutaminyl-tRNA synth 38.0 62 0.0013 31.0 5.0 48 1-48 271-334 (554)
98 PRK12283 tryptophanyl-tRNA syn 36.3 17 0.00038 33.1 1.1 24 1-29 265-288 (398)
99 KOG4426 Arginyl-tRNA synthetas 36.2 3.7E+02 0.008 25.2 9.8 118 5-129 478-612 (656)
100 PTZ00437 glutaminyl-tRNA synth 35.6 48 0.001 31.8 3.9 49 1-49 287-351 (574)
101 cd00806 TrpRS_core catalytic c 34.5 13 0.00028 32.2 -0.0 23 1-28 192-215 (280)
102 PRK14703 glutaminyl-tRNA synth 31.3 88 0.0019 31.3 5.1 38 11-48 299-337 (771)
103 PRK08560 tyrosyl-tRNA syntheta 30.0 20 0.00044 31.7 0.4 13 1-13 215-228 (329)
104 TIGR00440 glnS glutaminyl-tRNA 29.3 83 0.0018 29.9 4.3 48 1-48 242-305 (522)
105 PRK01406 gltX glutamyl-tRNA sy 29.2 1.1E+02 0.0023 28.8 5.0 27 1-28 252-279 (476)
106 TIGR01323 nitrile_alph nitrile 29.0 23 0.00051 28.4 0.6 41 8-49 118-172 (185)
107 PRK12282 tryptophanyl-tRNA syn 28.6 20 0.00042 32.0 0.1 13 1-13 197-209 (333)
108 PF11044 TMEMspv1-c74-12: Plec 27.5 34 0.00074 20.8 0.9 10 232-241 33-42 (49)
109 cd00418 GlxRS_core catalytic c 27.4 62 0.0013 27.2 2.9 29 1-30 154-183 (230)
110 PF12960 DUF3849: Protein of u 25.7 61 0.0013 24.8 2.3 37 6-42 43-83 (133)
111 PLN02859 glutamine-tRNA ligase 24.6 81 0.0017 31.5 3.5 49 1-50 500-565 (788)
112 PTZ00348 tyrosyl-tRNA syntheta 24.2 2.4E+02 0.0052 27.8 6.6 33 86-118 320-353 (682)
113 PRK00927 tryptophanyl-tRNA syn 20.8 32 0.00069 30.6 -0.1 24 1-29 194-220 (333)
No 1
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=2.1e-45 Score=344.39 Aligned_cols=220 Identities=78% Similarity=1.201 Sum_probs=192.4
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||+|+|.+++++||+|++||||++.+++.+|++|+++.|.+++|++|++++||+++|++.++.+++++.+|....
T Consensus 367 MSKS~GN~i~p~e~l~~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k~~~~~~~~~~~ 446 (616)
T PLN02224 367 MGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCESTLVEDST 446 (616)
T ss_pred ccccCCccCCHHHHHHHcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888877664322
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIA 160 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l~ 160 (248)
....|.++.+.+++++..+.++|++|++++|+..+|+|++.+|+|++..+||+++++++...+++..++++++++++.++
T Consensus 447 ~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~~~~N~Yi~~~~PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a 526 (616)
T PLN02224 447 VAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIGNAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIA 526 (616)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCCchhhhccccccHHHHHHHHHHHHHHHHHHH
Confidence 23457899999999999999999999999999999999999999999999999998754334456667889999999999
Q ss_pred HHhhccccHHHHHHHHHhCCCcccccCCCccccccCCCCCCCccCCCCCccccCCccccc
Q 039609 161 VALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIELKTGT 220 (248)
Q Consensus 161 ~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~w~~~~~~~~~~~~~i~~~~~lf~ki~~~~~~ 220 (248)
+||+||||++|++||++||.+.+......|.+..|+.+..|+.++.+.|||+||+.+.++
T Consensus 527 ~LLaPf~P~~Ae~I~~~Lg~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~Lf~ri~~~~~~ 586 (616)
T PLN02224 527 VALSPIAPCLSLRIYSQLGYSEDQFNSITWSDTKWGGLKGGQVMEQASPVFARIELNPEK 586 (616)
T ss_pred HHHhccccHHHHHHHHHhCCCcccccccchhhhccccCCCCCCCCCCCCCCCCcCcchHH
Confidence 999999999999999999986533222356554455567789999999999999976544
No 2
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.7e-45 Score=335.47 Aligned_cols=220 Identities=33% Similarity=0.567 Sum_probs=196.6
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||||||.+++++||+|++||||++..|+++|++||++.|.+++|++|+|.+||+++|+++|+.++++|.+|....
T Consensus 334 mSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~~fi~k~~~g~vp~~~~ 413 (558)
T COG0143 334 MSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGVVPAAGA 413 (558)
T ss_pred ccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986531
Q ss_pred -CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHH
Q 039609 81 -VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRII 159 (248)
Q Consensus 81 -~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l 159 (248)
....|+.+...+..+...+.++|+.++|++|++.+|+|++.+|+|++..+||+++|++ ..+++.++++.++++++.+
T Consensus 414 ~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~~~~PW~l~k~~--~~~~~~~vl~~~~~~~r~l 491 (558)
T COG0143 414 PDLEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQAPWKLAKED--KRERLATVLYLALELVRVL 491 (558)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCchhhccC--cHHHHHHHHHHHHHHHHHH
Confidence 1257889999999999999999999999999999999999999999999999999973 2567888999999999999
Q ss_pred HHHhhccccHHHHHHHHHhCCCcccccCCCccccccCCCCCCCccCCCCCccccCCccccccccC
Q 039609 160 AVALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIELKTGTEDGG 224 (248)
Q Consensus 160 ~~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~w~~~~~~~~~~~~~i~~~~~lf~ki~~~~~~~~~~ 224 (248)
+++|+||||.+|++||++||.+.+.. ...|... +..+.+|+.++++++||+|++.++++++..
T Consensus 492 a~ll~P~mP~~a~ki~~~L~~~~~~~-~~~~~~~-~~~l~~~~~~~~~~~lF~ri~~~~~~~~~~ 554 (558)
T COG0143 492 AILLYPFMPETAEKIWDQLGLEEDAR-NFTWLGA-RQPLLPGHKLGPPEPLFPRIEEEAIEELIE 554 (558)
T ss_pred HHHhcCcCcchHHHHHHHhCCccccc-cchhhhh-ccccCCCcccCCcccCccccCHHHHHHHHH
Confidence 99999999999999999999875321 1344332 224677899999999999999998876543
No 3
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=1e-44 Score=348.59 Aligned_cols=215 Identities=22% Similarity=0.358 Sum_probs=188.4
Q ss_pred CCCCcCCccChhHHHHh-cChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhH----hhcCCcc
Q 039609 1 MGKSLGNTLEPNELVHN-FGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLK----KNCQSTL 75 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~-yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~----~~~~~~~ 75 (248)
||||+||||+|.++++. ||+|++||||++.+++++|.+||++.|.+++|++|+|++||+++|+++|+. +++++.+
T Consensus 349 MSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv~R~~~~i~~~~~k~~~g~v 428 (801)
T PLN02610 349 FSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFIAKPPGAGYGSVI 428 (801)
T ss_pred ecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcC
Confidence 99999999999999996 999999999999999999999999999999999999999999999999998 5688888
Q ss_pred cCCCc--CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHH
Q 039609 76 VVDSA--VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIIL 153 (248)
Q Consensus 76 ~~~~~--~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~ 153 (248)
|.... ....|.++++.++++++++.++|++|+|+.|++.++++++.+|+||+..+||++.+++ .+++.+++++++
T Consensus 429 p~~~~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~~~~NkYIe~~kPW~L~k~d---~~~l~~vl~~~l 505 (801)
T PLN02610 429 PDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKED---KPSCAIVVKTSV 505 (801)
T ss_pred CCccccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCchhhhCCC---HHHHHHHHHHHH
Confidence 75321 2345789999999999999999999999999999999999999999999999998753 245677899999
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHhCCCcccccCCCccc---------cccCCCCCCCccCCCCCccccCCcccccc
Q 039609 154 EAMRIIAVALSPVTPNLCWRIYEQLGYSNEQFGNAAWSD---------TKWGGLKGGQVMAQPKPVFGRIELKTGTE 221 (248)
Q Consensus 154 ~~l~~l~~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~w~~---------~~~~~~~~~~~i~~~~~lf~ki~~~~~~~ 221 (248)
++++.++++|+||||++|++||++||++... ..|.+ ..|+.+..|+.++++.|||+||+.+++++
T Consensus 506 e~lr~la~LL~PfmP~~aeeI~~~Lg~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~lF~ri~~~~~~~ 579 (801)
T PLN02610 506 GLVYLLACLLEPFMPSFSKEVLKQLNLPPES---LSLSDEKGEVARAKRPWELVPAGHKIGTPEPLFKELKDEEVEA 579 (801)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHhCCCccc---ccchhccccccccccccccCCCCCCCCCCCCCCCCCCHHHHHH
Confidence 9999999999999999999999999986432 12221 12444567899999999999999877643
No 4
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8e-43 Score=332.40 Aligned_cols=213 Identities=37% Similarity=0.669 Sum_probs=188.3
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||+|+|.|++++||+|++||||++.+++++|++||++.|.+++|++|++++||+++|+..++.+++++.+|....
T Consensus 300 MSKS~GN~i~p~d~l~~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~~p~~~~ 379 (648)
T PRK12267 300 MSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDGEIPAPGN 379 (648)
T ss_pred ecccCCcccCHHHHHHHcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcCCCCCC
Confidence 99999999999999999999999999999899999999999999999999999999999999999998888887774333
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIA 160 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l~ 160 (248)
....|+++++.++++...+.++|++|+|++|++.+++|++.+|+|++..+||.+.+++. +.+++.+++++++++++.++
T Consensus 380 ~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~~~~N~Yi~~~kpW~~~~~~~-~~~~~~~~l~~~~~~l~~~~ 458 (648)
T PRK12267 380 VTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLISRANKYIDETAPWVLAKDEG-KKERLATVMYHLAESLRKVA 458 (648)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChhhhcCcc-cHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999876532 24457778999999999999
Q ss_pred HHhhccccHHHHHHHHHhCCCcccccCCCcccc-ccCCCCCCCccCCCCCccccCCcc
Q 039609 161 VALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDT-KWGGLKGGQVMAQPKPVFGRIELK 217 (248)
Q Consensus 161 ~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~w~~~-~~~~~~~~~~i~~~~~lf~ki~~~ 217 (248)
++|+||||++|++||++||.+... ..|.+. .|+.+.+|+.++.+.+||+||+.+
T Consensus 459 ~lL~P~~P~~ae~i~~~Lg~~~~~---~~~~~~~~~~~~~~g~~~~~~~~lf~k~~~~ 513 (648)
T PRK12267 459 VLLSPFMPETSKKIFEQLGLEEEL---TSWESLLEWGGLPAGTKVAKGEPLFPRIDVE 513 (648)
T ss_pred HHHhCccchHHHHHHHHcCCCccc---cchhhhhhhccccCCCccCCCCCCcCCCCcH
Confidence 999999999999999999985321 245332 244567799999999999999975
No 5
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.8e-40 Score=316.93 Aligned_cols=208 Identities=25% Similarity=0.375 Sum_probs=184.3
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCccc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCC
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFG-NDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDS 79 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~-~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~ 79 (248)
||||+||+|+|.|++++||+|++||||++.++.+ +|.+|+++.+....|++|+++++|+++|+.+++.+++++.+|.
T Consensus 330 MSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~~-- 407 (673)
T PRK00133 330 MSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINKRFDGKLPD-- 407 (673)
T ss_pred ccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--
Confidence 9999999999999999999999999999989999 9999999999999999999999999999999888777665552
Q ss_pred cCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHH
Q 039609 80 AVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRII 159 (248)
Q Consensus 80 ~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l 159 (248)
...|.+++..++++...+.++|++|+++.|++.+++|++.+|+|++..+||.+.+++ .+++.+++++++++++.+
T Consensus 408 --~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~N~yi~~~kpw~~~~~~---~~~~~~~l~~~~~~l~~l 482 (673)
T PRK00133 408 --ALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNEPWKLAKQD---GERLQAVCSVGLNLFRAL 482 (673)
T ss_pred --CcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCChhhhcCC---HHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999999999999999987643 345677899999999999
Q ss_pred HHHhhccccHHHHHHHHHhCCCcccccCCCccccccCCCCCCCccCCCCCccccCCccccccc
Q 039609 160 AVALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIELKTGTED 222 (248)
Q Consensus 160 ~~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~w~~~~~~~~~~~~~i~~~~~lf~ki~~~~~~~~ 222 (248)
+++|+||||++|++||++||.+. ..|.+. +.+..|+.++.+.|||+|++.+.++++
T Consensus 483 ~~lL~Pf~P~~ae~i~~~Lg~~~-----~~~~~~--~~~~~g~~~~~~~~lf~~~~~~~~~~~ 538 (673)
T PRK00133 483 AIYLKPVLPELAERAEAFLNLEE-----LTWDDA--QQPLAGHPINKFKILFTRIEDKQIEAL 538 (673)
T ss_pred HHHhhChhchHHHHHHHHhCCCc-----cChhhh--cCCCCCCCcCCCCcCCcCCCHHHHHHH
Confidence 99999999999999999999852 245432 234579999999999999998887544
No 6
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.9e-39 Score=300.34 Aligned_cols=214 Identities=27% Similarity=0.468 Sum_probs=185.3
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||+|+|.|++++||+|++|||+++.++.++|++|+++.+....|.+++++++|+++|+.+++.+..++.+| ...
T Consensus 335 MSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~~~~~~~~~~~~~~-~~~ 413 (556)
T PRK12268 335 FSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFIEKYFGGIVP-PGE 413 (556)
T ss_pred eccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHHHHHHHHHhcCCcCC-CCc
Confidence 9999999999999999999999999999988999999999999998889999999999999999988776655554 223
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIA 160 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l~ 160 (248)
....|+++++.++.++..+.++|++|+++.|++.+++|++.+|+|++..+||.+.+++ .+.+..++++++++++.++
T Consensus 414 ~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~~~~n~yi~~~kpw~~~~~~---~~~~~~~l~~~~~~l~~~~ 490 (556)
T PRK12268 414 LGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLDEKAPWKLAKTD---RERAATVLYTALNLVRLLA 490 (556)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCChhhhcCC---HHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999999999999999999999999999999887532 3345667889999999999
Q ss_pred HHhhccccHHHHHHHHHhCCCcccccCCCccccccCCCCCCCccCCCCCccccCCccccccc
Q 039609 161 VALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIELKTGTED 222 (248)
Q Consensus 161 ~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~w~~~~~~~~~~~~~i~~~~~lf~ki~~~~~~~~ 222 (248)
++|+|||||+||+||++||.+. .....|+... .++.|+.++.+++||+|++.++++++
T Consensus 491 ~lL~P~~P~~aeei~~~Lg~~~--~~~~~w~~~~--~~~~g~~i~~~~~lf~r~~~~~~~~~ 548 (556)
T PRK12268 491 VLLYPFLPFSAQKIWEMLGGEN--IEKLTWESLK--PLLPGHPINKPEPLFKKIDDEQIEEE 548 (556)
T ss_pred HHhhCccchHHHHHHHHhCCCC--Ccccchhhhc--CCCCCCCCCCCCCCCCCCCHHHHHHH
Confidence 9999999999999999999731 2234565432 35679999999999999998887654
No 7
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-37 Score=290.27 Aligned_cols=212 Identities=41% Similarity=0.718 Sum_probs=183.0
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||+|+|.|++++||+|++||||++.+++++|++|+++.+....|.+|.+.++|+++|+.+++.+.+++.+|....
T Consensus 300 MSKS~GN~i~~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~ 379 (511)
T PRK11893 300 MSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFDGKVPEPGA 379 (511)
T ss_pred ecccCCcEEcHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Confidence 99999999999999999999999999999889999999999999999999999999999999999887665555553333
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIA 160 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l~ 160 (248)
....|++++..++.+...+.++|++|+++.|+..+++|++.+|.|++..+||.+.+++ .+++.+++++++++++.++
T Consensus 380 ~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~~pw~~~~~~---~~~~~~~l~~~~~~l~~l~ 456 (511)
T PRK11893 380 LTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALVRAANKYIDEQAPWSLAKTD---PERLATVLYTLLEVLRGIA 456 (511)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCChhhhcCC---HHHHHHHHHHHHHHHHHHH
Confidence 3556889999999999999999999999999999999999999999999999876542 3456778999999999999
Q ss_pred HHhhccccHHHHHHHHHhCCCcccccCCCccccccCCCCCCCccCCCCCccccCCcc
Q 039609 161 VALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIELK 217 (248)
Q Consensus 161 ~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~w~~~~~~~~~~~~~i~~~~~lf~ki~~~ 217 (248)
++|+||||++|++||++||.+.+.. ..|.+..+..+..|+.++.+++||+||+.+
T Consensus 457 ~ll~P~~P~~ae~i~~~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~ 511 (511)
T PRK11893 457 VLLQPVMPELAAKILDQLGVEEDEN--RDFAALSWGRLAPGTTLPKPEPIFPRLEEE 511 (511)
T ss_pred HHHhCccchHHHHHHHHhCCCcccc--cchhhhhcccCCCCCCCCCCCCCccCCCCC
Confidence 9999999999999999999754321 234433344566799999999999999863
No 8
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=2.2e-37 Score=289.40 Aligned_cols=203 Identities=35% Similarity=0.660 Sum_probs=177.8
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||+|+|.|++++||+|++|||+++.+++.+|++|+++.+.+..|++++++++|+++|+.+++.+++++.+|....
T Consensus 328 mSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~ 407 (530)
T TIGR00398 328 MSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKYFNGVLPSEDI 407 (530)
T ss_pred ecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcc
Confidence 99999999999999999999999999999888999999999999999999999999999999999888766665553323
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIA 160 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l~ 160 (248)
....|++++..++++...+..+|++|+++.|++.+++|++.+|.|++..+||.+.+++ . +...+++++.++++.++
T Consensus 408 ~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~~~~~~---~-~~~~~~~~l~~~l~~l~ 483 (530)
T TIGR00398 408 TDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKPWELFKQS---P-RLKELLAVCSMLIRVLS 483 (530)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHhcCCChhhcCCh---H-HHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999999999999987542 1 35567888999999999
Q ss_pred HHhhccccHHHHHHHHHhCCCcccccCCCccccccCCCCCCCccCCCCCccccCC
Q 039609 161 VALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIE 215 (248)
Q Consensus 161 ~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~w~~~~~~~~~~~~~i~~~~~lf~ki~ 215 (248)
++|+|||||+|++||++||.+.. |.. .. .+..|+.+++|.|||+|++
T Consensus 484 ~ll~P~~P~~ae~i~~~L~~~~~------~~~-~~-~~~~~~~i~~~~~lf~ki~ 530 (530)
T TIGR00398 484 ILLYPIMPKLSEKILKFLNFELE------WDF-KL-KLLEGHKLNKAEPLFSKIE 530 (530)
T ss_pred HHHhCcccHHHHHHHHHhCCChh------hhh-hc-CCCCCCCCCCCCCCCCCCC
Confidence 99999999999999999998642 211 11 2456899999999999986
No 9
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-37 Score=265.46 Aligned_cols=221 Identities=22% Similarity=0.332 Sum_probs=196.2
Q ss_pred CCCCcCCccChhHHHHh-cChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCC
Q 039609 1 MGKSLGNTLEPNELVHN-FGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDS 79 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~-yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~ 79 (248)
+|||+|.+|...++-+. .+++++||||++.+|+.+|..|||++|..++|++|.+++|||++|++.++...++|.+|.-
T Consensus 344 FSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFvNR~l~fv~~~~~g~Vp~~- 422 (567)
T KOG1247|consen 344 FSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFVNRVLKFVAAKYNGVVPEM- 422 (567)
T ss_pred ccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhCCcccce-
Confidence 69999999999998875 8999999999999999999999999999999999999999999999999999999999864
Q ss_pred cCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHH
Q 039609 80 AVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRII 159 (248)
Q Consensus 80 ~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l 159 (248)
.....|..+++.++.+..++...||.-.++.|++.+|++.+.+|.|++..+.|+++..+. +++..++.+.+.++..+
T Consensus 423 ~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is~~GNqylQ~~~~~k~~~~~r---~r~~~vi~~a~nii~lv 499 (567)
T KOG1247|consen 423 ELTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEISRRGNQYLQENTDNKLYEESR---QRAGTVIGLAANIIYLV 499 (567)
T ss_pred eecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcccccchhhhcc---cccceeeehhhHHHHHH
Confidence 234458899999999999999999999999999999999999999999999988876543 45666777888899999
Q ss_pred HHHhhccccHHHHHHHHHhCCCcccccCCCccccccCCCCCCCccCCCCCccccCCccccccccCCChHHhHHHHH
Q 039609 160 AVALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIELKTGTEDGGEPAAAKQVAKK 235 (248)
Q Consensus 160 ~~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~w~~~~~~~~~~~~~i~~~~~lf~ki~~~~~~~~~~~~~~~~~~~~~ 235 (248)
+.+|+||||.++.+|..+|+.+...+. +..+..+++||.|+.|+|||+|++.++++++.. |.||++
T Consensus 500 s~ll~P~mP~~s~~I~kqlnlp~~~~~-----~~~~~~l~~gH~ig~~~pLFq~l~~~qiee~r~-----k~gg~q 565 (567)
T KOG1247|consen 500 SVLLYPYMPTTSAEILKQLNLPETLFP-----DRFICRLLAGHRIGTPSPLFQKLDEDQIEEWRA-----KFGGQQ 565 (567)
T ss_pred HHHhccccccchHHHHHHhCCccccCC-----CccceeecCcCccCCccHHHHhcCHHHHHHHHH-----hhcCCC
Confidence 999999999999999999999854332 222335789999999999999999999999875 777765
No 10
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-35 Score=255.63 Aligned_cols=191 Identities=57% Similarity=0.877 Sum_probs=167.2
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--hhHhhcCCccc-C
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLG--LLKKNCQSTLV-V 77 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~--~~~~~~~~~~~-~ 77 (248)
||||+||||||.+++++||+|++||||++++.++.|+||+++.+....|++|++++||+++|+++ +...++...+- .
T Consensus 345 MsKSLGNvvdP~~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~~~ 424 (578)
T KOG0436|consen 345 MSKSLGNVVDPFELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLVVD 424 (578)
T ss_pred cchhhccccCHHHHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcccChhccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999987 33333322211 1
Q ss_pred CCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHH
Q 039609 78 DSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMR 157 (248)
Q Consensus 78 ~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~ 157 (248)
.......+..+...+..+.+.+.+.+++|.+..|++++.+.++.+|.|++..+||++.++...+.+.+..++..+++++|
T Consensus 425 s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~~ntlvq~~aPWkl~~dsq~~~~~la~~~~~~le~lr 504 (578)
T KOG0436|consen 425 SPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNAGNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLR 504 (578)
T ss_pred CcchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHHhhhhhhhhcCCceeccccCccHHHHHHHHHHHHHHHH
Confidence 11223456678889999999999999999999999999999999999999999999999887777778888999999999
Q ss_pred HHHHHhhccccHHHHHHHHHhCCCcccccCCCcc
Q 039609 158 IIAVALSPVTPNLCWRIYEQLGYSNEQFGNAAWS 191 (248)
Q Consensus 158 ~l~~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~w~ 191 (248)
+++++|+|+||.+|.+++++||++.+.+...+|.
T Consensus 505 v~~illqpv~Psls~~llsqlgvsk~qrsl~~~~ 538 (578)
T KOG0436|consen 505 VIGILLQPVAPSLSLRLLSQLGVSKDQRSLITWS 538 (578)
T ss_pred HHHHHHccccchhHHHHHHHcCCChhhcccccch
Confidence 9999999999999999999999987665444564
No 11
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=99.97 E-value=3.9e-31 Score=261.85 Aligned_cols=173 Identities=17% Similarity=0.209 Sum_probs=142.7
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhc--CCcccCC
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNC--QSTLVVD 78 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~--~~~~~~~ 78 (248)
||||+||||+|.+++++||+|++||||++.+++++|++|+++.+... .+|++++|| +.|++.+....+ ++..+..
T Consensus 539 MSKSkGNvIdP~dvIe~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~--~~f~nkl~N-~~R~~~~~~~~~~~~~~~~~~ 615 (1052)
T PRK14900 539 MSKTKGNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGY--RAFANKLWN-ASRFALMNLSGYQERGEDPAR 615 (1052)
T ss_pred ccCCCCCCCCHHHHHHHhCcHHHHHHHHhcCCCCCCCcccHHHHHHH--HHHHHHHHH-HHHHHHHhhhccCcccccccc
Confidence 99999999999999999999999999999899999999999999553 469999999 566665433222 2222222
Q ss_pred CcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--HHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHH
Q 039609 79 SAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDIS--NAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAM 156 (248)
Q Consensus 79 ~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~--~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l 156 (248)
......|+|+++.++.++.++.++|++|+|+.|++.+++|+ +.||+||+..+|| +++++. .+...+++++.+++
T Consensus 616 ~~~~~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~n~Yie~~k~~-l~~~~~---~~~~~~~~~L~~~L 691 (1052)
T PRK14900 616 LARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAFVWHELCDWYIELAKEA-LASEDP---EARRSVQAVLVHCL 691 (1052)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHHHhccHh-hccCCH---HHHHHHHHHHHHHH
Confidence 22346799999999999999999999999999999999997 6999999998885 554322 22334567788899
Q ss_pred HHHHHHhhccccHHHHHHHHHhCC
Q 039609 157 RIIAVALSPVTPNLCWRIYEQLGY 180 (248)
Q Consensus 157 ~~l~~lL~P~~P~~ae~i~~~Lg~ 180 (248)
+.+++||+|||||+||+||++|+.
T Consensus 692 ~~l~~LLaPfmP~~aEeiw~~L~~ 715 (1052)
T PRK14900 692 QTSYRLLHPFMPFITEELWHVLRA 715 (1052)
T ss_pred HHHHHHHHhHhHHHHHHHHHHhcc
Confidence 999999999999999999999974
No 12
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.2e-30 Score=247.72 Aligned_cols=173 Identities=19% Similarity=0.292 Sum_probs=142.9
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||||||.|+|++||+|+|||+|+..+..|+|++|+++.+... ..++|++||..++++....+......+. ..
T Consensus 526 MSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~--rnF~nKlWNa~Rfv~~~~~~~~~~~~~~-~~ 602 (877)
T COG0525 526 MSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGY--RNFLNKLWNATRFVLMNLDDLGPDDLDL-LA 602 (877)
T ss_pred CcccCCCcCCHHHHHHHhChHHHHHHHHhccCCCcccCcCHHHHHHH--HHHHHHHHhHHHHHHhcccccCcccccc-cc
Confidence 99999999999999999999999999999889999999999999985 5689999999888776543211111110 12
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--HHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDIS--NAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRI 158 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~--~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~ 158 (248)
....|+|+++++++++..++++|++|+|..|.+.+++|+ ..|++|++..|| .++. + . .+ ...+.+++..+++.
T Consensus 603 ~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K~-~l~~-~-~-~~-~~~a~~tL~~vl~~ 677 (877)
T COG0525 603 LSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKP-RLYG-G-E-EE-KRAARATLYYVLDT 677 (877)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHhhh-hhcC-c-H-HH-HHHHHHHHHHHHHH
Confidence 247899999999999999999999999999999999998 699999999998 3332 2 1 11 22345667777888
Q ss_pred HHHHhhccccHHHHHHHHHhCCC
Q 039609 159 IAVALSPVTPNLCWRIYEQLGYS 181 (248)
Q Consensus 159 l~~lL~P~~P~~ae~i~~~Lg~~ 181 (248)
+++||+|||||++|+||+.|...
T Consensus 678 ~lrLLhPfmPfiTEei~q~l~~~ 700 (877)
T COG0525 678 LLRLLHPFMPFITEEIWQKLPGT 700 (877)
T ss_pred HHHHhCCCCccchHHHHHhcCCC
Confidence 99999999999999999999874
No 13
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=99.97 E-value=1.8e-30 Score=254.41 Aligned_cols=173 Identities=16% Similarity=0.221 Sum_probs=142.5
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccC-CC
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVV-DS 79 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~-~~ 79 (248)
||||+||+|+|.+++++||+|++||||++.++.++|++|+++.+.... .+++++||.. |+..+.....++ ++. ..
T Consensus 526 MSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~~d~~f~~~~~~~~~--~~~nkl~N~~-rf~~~~~~~~~~-~~~~~~ 601 (861)
T TIGR00422 526 MSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESAR--NFLNKLWNAS-RFVLMNLSDDLE-LSGGEE 601 (861)
T ss_pred CCcCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceecHHHHHHHH--HHHHHHHHHH-HHHHhccccccc-cccccc
Confidence 999999999999999999999999999998888999999999998753 4899999944 444432222211 221 11
Q ss_pred cCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--HHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHH
Q 039609 80 AVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDIS--NAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMR 157 (248)
Q Consensus 80 ~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~--~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~ 157 (248)
.....|+|+++.++.++..+.++|++|+|+.|++.+++|+ +.||+|++..+||... .+ . ++...+++++.++++
T Consensus 602 ~~~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~~~~-~~-~--~~~~~~~~~l~~~l~ 677 (861)
T TIGR00422 602 KLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYN-GN-E--AEKKAARDTLYYVLD 677 (861)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhHHHHcC-CC-c--HHHHHHHHHHHHHHH
Confidence 2356799999999999999999999999999999999996 7999999999998742 22 1 223446778888899
Q ss_pred HHHHHhhccccHHHHHHHHHhCCC
Q 039609 158 IIAVALSPVTPNLCWRIYEQLGYS 181 (248)
Q Consensus 158 ~l~~lL~P~~P~~ae~i~~~Lg~~ 181 (248)
.+++||+|||||+||+||++|+..
T Consensus 678 ~~~~lL~Pf~P~itEelw~~L~~~ 701 (861)
T TIGR00422 678 KALRLLHPFMPFITEEIWQHFKEG 701 (861)
T ss_pred HHHHHHhhhhhHHHHHHHHhCccc
Confidence 999999999999999999999854
No 14
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=1.7e-30 Score=254.68 Aligned_cols=172 Identities=18% Similarity=0.243 Sum_probs=142.9
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||||+|.|++++||+|++||||++.++.++|++|+++.+.... .++|+++|..+++...+..+..+.++....
T Consensus 521 MSKSlGNvIdP~dvi~~yGaDalR~~ll~~~~~~~Di~fs~~~l~~~~--~~~nkl~N~~Rf~~~~~~~~~~~~~~~~~~ 598 (874)
T PRK05729 521 MSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGYR--NFANKLWNASRFVLMNLEGADVGELPDPEE 598 (874)
T ss_pred cccCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceeCHHHHHHHH--HHHHHHHHHHHHHHHhcccCCccccccccc
Confidence 999999999999999999999999999998899999999999997753 589999996655543223222222222222
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--HHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDIS--NAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRI 158 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~--~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~ 158 (248)
....|+|+++.++.++..+.++|++|+|+.|++.+++|+ ..||+|++..+|| ++ + . + ...+++++.++++.
T Consensus 599 ~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~~~~~Yle~~k~~-l~-~-~---~-~~~~~~~l~~~l~~ 671 (874)
T PRK05729 599 LSLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEFCDWYLELAKPV-LQ-E-A---A-KRATRATLAYVLEQ 671 (874)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-h-h---H-HHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999999998 6999999999999 44 2 1 1 23456788889999
Q ss_pred HHHHhhccccHHHHHHHHHhCCC
Q 039609 159 IAVALSPVTPNLCWRIYEQLGYS 181 (248)
Q Consensus 159 l~~lL~P~~P~~ae~i~~~Lg~~ 181 (248)
+++||+|||||+||+||++|+..
T Consensus 672 ~~~lL~Pf~PfitEelw~~l~~~ 694 (874)
T PRK05729 672 ILRLLHPFMPFITEELWQKLAPL 694 (874)
T ss_pred HHHHHcccchhhHHHHHHhcccC
Confidence 99999999999999999999853
No 15
>PLN02882 aminoacyl-tRNA ligase
Probab=99.97 E-value=4.3e-30 Score=255.69 Aligned_cols=176 Identities=18% Similarity=0.251 Sum_probs=141.5
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCc-ccCCCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHhhHhhcCCcc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVE-FGNDGDYSEDRFIKIVNAHLANTIGNLL----NRTLGLLKKNCQSTL 75 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~-~~~d~~fs~~~l~~~~n~~l~~~l~N~~----~r~~~~~~~~~~~~~ 75 (248)
||||+||+|+|.+++++||+|++||||++... .++|++|+++.+.+.++. +.++++|.. +++..+..+++++..
T Consensus 615 MSKSlGNvIdP~evi~~YGADaLR~~Ll~s~~~~~~d~~fs~~~v~~~~~~-~l~kl~Na~rfl~~~~~~~~~~~~~~~~ 693 (1159)
T PLN02882 615 MSKSLKNYPDPNEVIDKYGADALRLYLINSPVVRAEPLRFKEEGVFGVVKD-VFLPWYNAYRFLVQNAKRLEVEGGAPFV 693 (1159)
T ss_pred cccCCCCCCCHHHHHHHhCcHHHHHHHHhCCcccCcCcccCHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhccccCCC
Confidence 99999999999999999999999999997433 378999999998876543 335566644 444333333344444
Q ss_pred cCC-----CcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH-HHhHHhhhcCCcccccCCcchHHHHHHHH
Q 039609 76 VVD-----SAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISN-AGNSYMDEHVPWSRFKQGGAASEAAAKDL 149 (248)
Q Consensus 76 ~~~-----~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~-~~n~yl~~~kpW~l~k~~~~~~~~~~~~l 149 (248)
|.. ......|+|+++.++++++.+.++|++|+|+.|+..+++|+. ++|+|++..+||...+.+. ++...++
T Consensus 694 p~~~~~~~~~~~~~D~wIls~l~~li~~v~~~me~y~f~~A~~~I~~Fv~~lsN~YIe~~Kprl~~~~~~---~~~~~al 770 (1159)
T PLN02882 694 PLDLAKLQNSANVLDRWINSATQSLVKFVREEMGAYRLYTVVPYLVKFIDNLTNIYVRFNRKRLKGRTGE---EDCRTAL 770 (1159)
T ss_pred ccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHhCCHhhhCCCCh---HHHHHHH
Confidence 421 112467999999999999999999999999999999999995 7999999999987654322 3355678
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHhCC
Q 039609 150 VIILEAMRIIAVALSPVTPNLCWRIYEQLGY 180 (248)
Q Consensus 150 ~~~~~~l~~l~~lL~P~~P~~ae~i~~~Lg~ 180 (248)
++++++++.++++|+|||||+||+||++|+.
T Consensus 771 ~tL~~vL~~l~~LLaPfmPf~aEeI~q~L~~ 801 (1159)
T PLN02882 771 STLYNVLLTSCKVMAPFTPFFTEVLYQNLRK 801 (1159)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHhcc
Confidence 8999999999999999999999999999974
No 16
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=99.97 E-value=5.1e-30 Score=252.29 Aligned_cols=175 Identities=17% Similarity=0.249 Sum_probs=143.2
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCc-ccCCC
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQST-LVVDS 79 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~-~~~~~ 79 (248)
||||+||||+|.+++++||+|++|||+++ +++++|++||++.+.+. .++.++|+|+++++++++..+..+. .+...
T Consensus 631 MSKSlGNvIdP~~ii~~yGaD~lRl~lls-~~~~~D~~fs~~~l~~~--~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~ 707 (961)
T PRK13804 631 MSKSLGNTVSPQDVIKQSGADILRLWVAS-VDYSDDQRIGKEILKQV--SETYRKLRNTLRWLLGNLAHFDPGEDVVAYA 707 (961)
T ss_pred ccCCCCCcCCHHHHHHhcCHHHHHHHHHh-CCCCCCcccCHHHHHHH--HHHHHHHHHHHHHHHhccccCCcccccCChh
Confidence 99999999999999999999999999997 78999999999998764 5778999999988877766543331 11112
Q ss_pred cCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--HHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHH
Q 039609 80 AVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDIS--NAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMR 157 (248)
Q Consensus 80 ~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~--~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~ 157 (248)
.....|+|+++.++++++.+.++|++|+|++|++.+++|+ .++|.|++..||| ++....+... ......++..+++
T Consensus 708 ~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~Yle~~K~r-l~~~~~~~~~-r~~~~~vL~~il~ 785 (961)
T PRK13804 708 DLPELERYMLHRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDIRKDA-LYCDAPSSLR-RRAAQTVFYEIFV 785 (961)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhHh-hhcCCCCcHH-HHHHHHHHHHHHH
Confidence 3345799999999999999999999999999999999998 5799999999998 5443322212 1223445566678
Q ss_pred HHHHHhhccccHHHHHHHHHhCC
Q 039609 158 IIAVALSPVTPNLCWRIYEQLGY 180 (248)
Q Consensus 158 ~l~~lL~P~~P~~ae~i~~~Lg~ 180 (248)
.++++|+|||||+||+||++|+.
T Consensus 786 ~l~~lLaPi~P~~aEeiw~~L~~ 808 (961)
T PRK13804 786 RLTKWLAPILPFTAEEAWLYRYP 808 (961)
T ss_pred HHHHHHHhhhhhhHHHHHHhccc
Confidence 89999999999999999999983
No 17
>PLN02943 aminoacyl-tRNA ligase
Probab=99.97 E-value=1.2e-29 Score=249.49 Aligned_cols=174 Identities=19% Similarity=0.324 Sum_probs=142.3
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-----------
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKK----------- 69 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~----------- 69 (248)
||||+||||+|.|++++||+|++|||+++ .++++|++|+++.|.. +.+++++++|+.+++...+..
T Consensus 584 MSKS~GN~i~p~~~i~~ygaDalR~~l~~-~~~~~d~~fs~~~l~~--~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~ 660 (958)
T PLN02943 584 MSKTLGNVIDPLDTIKEFGTDALRFTLAL-GTAGQDLNLSTERLTS--NKAFTNKLWNAGKFVLQNLPSQSDTSAWEHIL 660 (958)
T ss_pred ccCcCCCCCCHHHHHHhcCChHHHHHHHh-CCCCCCccccHHHHHH--HHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 99999999999999999999999999998 5679999999999986 578999999988877654321
Q ss_pred --hcCCcccCCCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--HHHhHHhhhcCCcccccCCcchHHHH
Q 039609 70 --NCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDIS--NAGNSYMDEHVPWSRFKQGGAASEAA 145 (248)
Q Consensus 70 --~~~~~~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~--~~~n~yl~~~kpW~l~k~~~~~~~~~ 145 (248)
.+++..+ .......|+|+++.++.+++++.++|++|+|+.|++.+++|+ +.||+|++..||| ++++++. ...
T Consensus 661 ~~~~~~~~~-~~~l~~~D~wilskl~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kpr-l~~~~~~--~~~ 736 (958)
T PLN02943 661 ACKFDKEES-LLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVGREIYDFFWSDFADWYIEASKTR-LYHSGDN--SAL 736 (958)
T ss_pred cccCCcccc-ccccCHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhccHh-hccCCch--HHH
Confidence 1111111 012346799999999999999999999999999999999995 8999999999996 4444322 122
Q ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHhCCC
Q 039609 146 AKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGYS 181 (248)
Q Consensus 146 ~~~l~~~~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~ 181 (248)
..+.+++..+++.+++||+|||||+||+||++|+..
T Consensus 737 ~~a~~vL~~vl~~ll~LL~PfmPfitEELwq~L~~~ 772 (958)
T PLN02943 737 SRAQAVLLYVFENILKLLHPFMPFVTEELWQALPYR 772 (958)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHcCCC
Confidence 345667778888999999999999999999999753
No 18
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=99.97 E-value=1.3e-29 Score=251.21 Aligned_cols=175 Identities=20% Similarity=0.276 Sum_probs=144.5
Q ss_pred CCCCcCCccChhHHHH-------------------------------------hcChhHHHHHHhccCcccCCCCCCHHH
Q 039609 1 MGKSLGNTLEPNELVH-------------------------------------NFGSDAVRYFFLKEVEFGNDGDYSEDR 43 (248)
Q Consensus 1 MSKS~GNvi~p~dli~-------------------------------------~yg~D~lR~~ll~~~~~~~d~~fs~~~ 43 (248)
||||+||||+|.++++ +||+|++||||++.++.++|++|+.+.
T Consensus 586 MSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~ 665 (995)
T PTZ00419 586 MSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINR 665 (995)
T ss_pred cccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHH
Confidence 9999999999999999 899999999999989999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhcCCccc-----C-CCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 039609 44 FIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLV-----V-DSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLD 117 (248)
Q Consensus 44 l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~-----~-~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~ 117 (248)
+... ..|+|++||+++|++.++.....+..+ . .......|+|+++.++.++..++++|++|+|+.|++.+++
T Consensus 666 v~~~--~~f~nklwN~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~e~y~f~~A~~~i~~ 743 (995)
T PTZ00419 666 VVGY--RHFCNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQATYN 743 (995)
T ss_pred HHHH--HHHHHHHHHHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 8754 679999999999988766543211100 0 1123457999999999999999999999999999999999
Q ss_pred HH--HHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHhCC
Q 039609 118 IS--NAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGY 180 (248)
Q Consensus 118 l~--~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~ae~i~~~Lg~ 180 (248)
|+ +.||+|++..+||. .+..+. .+...+.+++.++++.+++||+|||||+||+||+.|+.
T Consensus 744 F~~~~~~n~Yie~~K~~l-~~~~~~--~~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw~~L~~ 805 (995)
T PTZ00419 744 FWLYELCDVYLELIKPRL-SKQSDG--ERKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLPN 805 (995)
T ss_pred HHHHhhHHHHHHHhhhhh-hcCCCc--HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhc
Confidence 84 79999999999986 322211 22334566778888999999999999999999999974
No 19
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=7.5e-29 Score=244.93 Aligned_cols=174 Identities=21% Similarity=0.301 Sum_probs=140.1
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhH--hhcCC-cccC
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLK--KNCQS-TLVV 77 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~--~~~~~-~~~~ 77 (248)
||||+||+|+|.+++++||+|++||||++.++.++|++||++.+.+..+..+ ++++|+++++..... .+... ..+.
T Consensus 593 MSKSlGNvIdP~dli~~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l-~kl~N~~~f~~~y~~~~~~~~~~~~~~ 671 (975)
T PRK06039 593 MSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFL-LTLWNVYSFFVLYANLDGFDYPPAEDE 671 (975)
T ss_pred cCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHH-HHHHHHHHHHHHHhhhccCCccccccc
Confidence 9999999999999999999999999999988889999999999877777665 999999988753321 11001 1111
Q ss_pred CCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH-HHhHHhhhcC--CcccccCCcchHHHHHHHHHHHHH
Q 039609 78 DSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISN-AGNSYMDEHV--PWSRFKQGGAASEAAAKDLVIILE 154 (248)
Q Consensus 78 ~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~-~~n~yl~~~k--pW~l~k~~~~~~~~~~~~l~~~~~ 154 (248)
.......|+|+++.++.++..+.++|++|+|+.|++.+++|++ .+|+|++..+ ||...+. .++ ..++.++.+
T Consensus 672 ~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~l~~f~~~lsn~Yi~~~k~r~w~~~~~----~~~-~~a~~~L~~ 746 (975)
T PRK06039 672 VDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFVDDLSNWYIRRSRRRFWKEEDD----PDK-LAAYATLYT 746 (975)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCc----HHH-HHHHHHHHH
Confidence 1223567999999999999999999999999999999999995 5799999774 5764221 112 234566778
Q ss_pred HHHHHHHHhhccccHHHHHHHHHhCC
Q 039609 155 AMRIIAVALSPVTPNLCWRIYEQLGY 180 (248)
Q Consensus 155 ~l~~l~~lL~P~~P~~ae~i~~~Lg~ 180 (248)
+++.++++|+|||||+||+||+.|+.
T Consensus 747 ~L~~l~~lLaPf~Pf~aEei~~~L~~ 772 (975)
T PRK06039 747 VLETLSRLAAPFTPFIAEEIYQNLTR 772 (975)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhccc
Confidence 88999999999999999999999984
No 20
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=4.7e-29 Score=242.81 Aligned_cols=170 Identities=20% Similarity=0.265 Sum_probs=141.4
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||+|+|.+++++||+|++|||++ .+++++|++|+++.+.. +.++.++++|+++++.. +.+ .+..+....
T Consensus 534 MSKS~GN~i~p~~~i~~yg~D~lR~~l~-~~~~~~d~~fs~~~~~~--~~~~l~kl~N~~r~~~~-~~~--~~~~~~~~~ 607 (800)
T PRK13208 534 MSKSKGNVVTPEELLEKYGADAVRYWAA-SARLGSDTPFDEKQVKI--GRRLLTKLWNASRFVLH-FSA--DPEPDKAEV 607 (800)
T ss_pred CCCCCCCCCCHHHHHHHcCccHHHHHHh-cCCCCCCceecHHHHHH--HHHHHHHHHHHHHHHHh-ccc--ccccCcccc
Confidence 9999999999999999999999999999 69999999999999865 57899999999876652 221 111111122
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISN--AGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRI 158 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~--~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~ 158 (248)
....|+|+++.++.+++++.++|++|+|+.|++.+++|+. .+|+|++..+||... .+.. +....+++++.++++.
T Consensus 608 ~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~~i~~f~~~~~~n~Yie~~k~~~~~-~~~~--~~~~~~~~~l~~~l~~ 684 (800)
T PRK13208 608 LEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWHVFCDDYLELVKSRAYG-EDEE--EEQKSARYTLYTVLDT 684 (800)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHhhHHhcC-CCCc--HHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999984 799999999997532 2221 1234567788899999
Q ss_pred HHHHhhccccHHHHHHHHHhC
Q 039609 159 IAVALSPVTPNLCWRIYEQLG 179 (248)
Q Consensus 159 l~~lL~P~~P~~ae~i~~~Lg 179 (248)
+++||+|||||+||+||++||
T Consensus 685 l~~LLaPf~P~iaEelw~~L~ 705 (800)
T PRK13208 685 LLRLLAPFLPFITEEVWSWLY 705 (800)
T ss_pred HHHHhcccchhhHHHHHHhCC
Confidence 999999999999999999998
No 21
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=99.96 E-value=1.5e-28 Score=241.13 Aligned_cols=174 Identities=20% Similarity=0.250 Sum_probs=141.1
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhhHhhcCC-cccC
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTL--GLLKKNCQS-TLVV 77 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~--~~~~~~~~~-~~~~ 77 (248)
||||+||||+|.|++++||+|++|||+++. ++++|++|+++.+... +..+.+.++|+++++. +.+.++..+ ..+.
T Consensus 612 MSKSkGNvI~p~d~i~~yGaDalR~~ll~~-~~~~D~~fs~~~l~~~-~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~ 689 (861)
T TIGR00392 612 MSKSLGNVVDPLKVINKYGADILRLYVASS-DPWEDLRFSDEILKQV-VEKYRKIRWNTYRFLLTYANLDKFDPLFNSVA 689 (861)
T ss_pred cCCCCCCCCCHHHHHHHcCHHHHHHHHHhC-CCCCCceECHHHHHHH-HHHHHHHHHHHHHHHHHHhccccCCccccccc
Confidence 999999999999999999999999999997 9999999999999764 4568888999888876 444332211 1111
Q ss_pred CCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HHhHHhhhcCC--cccccCCcchHHHHHHHHHHHH
Q 039609 78 DSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISN--AGNSYMDEHVP--WSRFKQGGAASEAAAKDLVIIL 153 (248)
Q Consensus 78 ~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~--~~n~yl~~~kp--W~l~k~~~~~~~~~~~~l~~~~ 153 (248)
.......|++++..++.+++.+.++|++|+|+.|++.+++|+. .+|.|++..+| |...+++ ..+ .+.+++.
T Consensus 690 ~~~l~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~Yi~~~k~~lw~~~~~~---~~~--~~~~~l~ 764 (861)
T TIGR00392 690 VEKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYCEAKDN---DKR--AAQTTLY 764 (861)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCH---HHH--HHHHHHH
Confidence 1223467899999999999999999999999999999999985 69999999877 8765422 112 3445667
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHhCCC
Q 039609 154 EAMRIIAVALSPVTPNLCWRIYEQLGYS 181 (248)
Q Consensus 154 ~~l~~l~~lL~P~~P~~ae~i~~~Lg~~ 181 (248)
++++.++++|+|||||+||+||++|+..
T Consensus 765 ~~l~~l~~lL~P~~P~~aeeiw~~L~~~ 792 (861)
T TIGR00392 765 YALLTLVRLLAPFLPHTAEEIYQNLPGG 792 (861)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhcccc
Confidence 7888999999999999999999999753
No 22
>PLN02843 isoleucyl-tRNA synthetase
Probab=99.96 E-value=1.5e-28 Score=242.02 Aligned_cols=173 Identities=17% Similarity=0.272 Sum_probs=138.1
Q ss_pred CCCCcCCccChhHHHH---------hcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 039609 1 MGKSLGNTLEPNELVH---------NFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNC 71 (248)
Q Consensus 1 MSKS~GNvi~p~dli~---------~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~ 71 (248)
||||+||||+|.++++ +||+|++|||+++ .++++|++|+.+.+.+. .+..++++|.++++++.+..+.
T Consensus 612 MSKSlGNvI~p~~vi~~~~~~~~~~~yGaD~lR~~l~~-~~~~~d~~~s~~~l~~~--~~~~~kl~n~~rf~lgnl~~~~ 688 (974)
T PLN02843 612 MSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRLWVAS-VDYTGDVLIGPQILKQM--SDIYRKLRGTLRYLLGNLHDWK 688 (974)
T ss_pred cCCCCCCcCCHHHHHhhccccccccccChHHHHHHHHh-cccCCCceeCHHHHHHH--HHHHHHHHHHHHHHHhCccCCC
Confidence 9999999999999999 7999999999997 88999999999998765 3557889999888776554321
Q ss_pred C-CcccCCCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH--HHHHhHHhhhcCCcccccCCcchHH-HHHH
Q 039609 72 Q-STLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDI--SNAGNSYMDEHVPWSRFKQGGAASE-AAAK 147 (248)
Q Consensus 72 ~-~~~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l--~~~~n~yl~~~kpW~l~k~~~~~~~-~~~~ 147 (248)
. ..++. ......|+|+++.++++++++.++|++|+|++|++.+++| .+++|.||+..|||......+...+ .+.+
T Consensus 689 ~~~~~~~-~~~~~~D~wiLskL~~li~~v~~aye~y~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qt 767 (974)
T PLN02843 689 PDNAVPY-EDLPSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQT 767 (974)
T ss_pred cccccCc-cccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHH
Confidence 1 11221 1234579999999999999999999999999999999988 4799999999999865442222112 2333
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHhCC
Q 039609 148 DLVIILEAMRIIAVALSPVTPNLCWRIYEQLGY 180 (248)
Q Consensus 148 ~l~~~~~~l~~l~~lL~P~~P~~ae~i~~~Lg~ 180 (248)
+|+. +++.++++|+|||||+||+||++|+.
T Consensus 768 vL~~---iLe~l~~LLaPimPf~aEEiw~~L~~ 797 (974)
T PLN02843 768 VLAA---HLLSLLRAIAPILPHLAEDAWQNLPF 797 (974)
T ss_pred HHHH---HHHHHHHHHhhhhhHHHHHHHHhccc
Confidence 4544 45667999999999999999999985
No 23
>PLN02381 valyl-tRNA synthetase
Probab=99.96 E-value=1.6e-28 Score=243.21 Aligned_cols=175 Identities=18% Similarity=0.230 Sum_probs=138.2
Q ss_pred CCCCcCCccChhHHHH-------------------------------------hcChhHHHHHHhccCcccCCCCCCHHH
Q 039609 1 MGKSLGNTLEPNELVH-------------------------------------NFGSDAVRYFFLKEVEFGNDGDYSEDR 43 (248)
Q Consensus 1 MSKS~GNvi~p~dli~-------------------------------------~yg~D~lR~~ll~~~~~~~d~~fs~~~ 43 (248)
||||+||||+|.++|+ +||+|++|||+++.++.++|++|+...
T Consensus 656 MSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~ 735 (1066)
T PLN02381 656 MSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILR 735 (1066)
T ss_pred CCCCCCCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHH
Confidence 9999999999999999 799999999999988889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhcCC--cccCCCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--
Q 039609 44 FIKIVNAHLANTIGNLLNRTLGLLKKNCQS--TLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDIS-- 119 (248)
Q Consensus 44 l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~--~~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~-- 119 (248)
+... ..++++++|++++++..+...+.. .++ .......|+|+++.++.++..+.++|++|+|+.|++.+++|+
T Consensus 736 v~~~--r~f~nKlwNa~rf~~~~~~~~~~~~~~~~-~~~~~~~DrWILskL~~~i~~v~~~~e~y~F~~A~~~l~~F~~~ 812 (1066)
T PLN02381 736 VVGY--RQWCNKLWNAVRFAMSKLGDDYTPPATLS-VETMPFSCKWILSVLNKAISKTVSSLDAYEFSDAASTVYSWWQY 812 (1066)
T ss_pred HHHH--HHHHHHHHHHHHHHHhhcccccCcccccC-ccccCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 8743 568999999998876443211110 011 112345799999999999999999999999999999999995
Q ss_pred HHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHhC
Q 039609 120 NAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLG 179 (248)
Q Consensus 120 ~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~ae~i~~~Lg 179 (248)
+.||+|++..+||..........++ ..+..++..++..+++||+|||||+||+||+.|+
T Consensus 813 dl~d~Yie~~K~~l~~~~~~~~~~r-~~a~~~L~~vL~~llrLL~PfmPfitEELw~~L~ 871 (1066)
T PLN02381 813 QFCDVFIEAIKPYFAGDNPEFASER-AAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLP 871 (1066)
T ss_pred HhHHHHHHHhHHHHccCCccccHHH-HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh
Confidence 7999999999998543211011111 1223455566677899999999999999999996
No 24
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=7.8e-29 Score=237.80 Aligned_cols=176 Identities=18% Similarity=0.335 Sum_probs=141.8
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCccc-CCC
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLV-VDS 79 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~-~~~ 79 (248)
||||+||+|+|.+++++||+|+||+|+++ ++++.|+.||++.+.+. .+..++++|.+++++..+..+...... ...
T Consensus 603 MSKSlGN~v~P~~V~~~yGADiLRLwv~s-sd~~~dl~~s~~il~~~--~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~ 679 (933)
T COG0060 603 MSKSLGNVVDPQDVIDKYGADILRLWVAS-SDYWEDLRFSDEILKQV--REVYRKIRNTYRFLLGNLDDFDPKKDAVLPE 679 (933)
T ss_pred ccccCCCcCCHHHHHHhhCchheeeeeee-cCchhccccCHHHHHHH--HHHHHHHHHHHHHHHHhccCCCccccccchh
Confidence 99999999999999999999999999998 66999999999996653 567799999999988876544322211 112
Q ss_pred cCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--HHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHH
Q 039609 80 AVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDIS--NAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMR 157 (248)
Q Consensus 80 ~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~--~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~ 157 (248)
.....|+|++++++++...+.++|++|+|+++++.+++|+ .++|+||+..+. +++.+..++.+| .....++.+++.
T Consensus 680 ~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kd-r~y~~~~~s~~r-raa~~~Ly~il~ 757 (933)
T COG0060 680 ELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKD-RLYTEAADSPDR-RAAQTTLYHILK 757 (933)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHHHHHHHH-HhhhcCCCCHHH-HHHHHHHHHHHH
Confidence 3456899999999999999999999999999999999998 689999999887 333331222222 223345556667
Q ss_pred HHHHHhhccccHHHHHHHHHhCCC
Q 039609 158 IIAVALSPVTPNLCWRIYEQLGYS 181 (248)
Q Consensus 158 ~l~~lL~P~~P~~ae~i~~~Lg~~ 181 (248)
.++++|+||+||+||+||+.|...
T Consensus 758 ~l~~~lAPilPftaEeiw~~l~~~ 781 (933)
T COG0060 758 ALVRLLAPILPFTAEEIWQNLPGE 781 (933)
T ss_pred HHHHHHcccchhhHHHHHHhCccC
Confidence 789999999999999999999765
No 25
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=1.3e-28 Score=241.69 Aligned_cols=171 Identities=19% Similarity=0.287 Sum_probs=136.3
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcC--CcccCC
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQ--STLVVD 78 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~--~~~~~~ 78 (248)
||||+||||+|.+++++||+|++|||+++ +++++|++||++.+.+. .++.++++|.++++++.+..+.. +.++ .
T Consensus 593 MSKSlGNvIdP~~ii~~yGaDalR~~ll~-~~~~~D~~~s~~~l~~~--~~~~~kl~N~~rf~~~nl~~~~~~~~~~~-~ 668 (912)
T PRK05743 593 MSKSLGNVIDPQDVIKKYGADILRLWVAS-TDYSGDVRISDEILKQV--AEAYRRIRNTLRFLLGNLNDFDPAKDAVP-Y 668 (912)
T ss_pred CCCCCCCcCCHHHHHHhcChHHHHHHHHh-cCCCCCeeecHHHHHHH--HHHHHHHHHHHHHHHhCccCCCcccccCC-c
Confidence 99999999999999999999999999997 88999999999998773 46778899988877654432111 1122 1
Q ss_pred CcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--HHHhHHhhhcCCc--ccccCCcchHHHHHHHHHHHHH
Q 039609 79 SAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDIS--NAGNSYMDEHVPW--SRFKQGGAASEAAAKDLVIILE 154 (248)
Q Consensus 79 ~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~--~~~n~yl~~~kpW--~l~k~~~~~~~~~~~~l~~~~~ 154 (248)
......|+|+++.++++++++.++|++|+|+.|++.+++|+ .++|.|++..+|| ...+++ ...+.+.++ +..
T Consensus 669 ~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Yie~~K~rly~~~~~~-~~r~~~~~v---L~~ 744 (912)
T PRK05743 669 EELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDAADS-LARRSAQTA---LYH 744 (912)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceeeheeccHhhhcCCCCc-HHHHHHHHH---HHH
Confidence 12346799999999999999999999999999999999999 6899999999995 332221 111223333 445
Q ss_pred HHHHHHHHhhccccHHHHHHHHHhC
Q 039609 155 AMRIIAVALSPVTPNLCWRIYEQLG 179 (248)
Q Consensus 155 ~l~~l~~lL~P~~P~~ae~i~~~Lg 179 (248)
+++.++++|+|||||+||+||++|+
T Consensus 745 ~l~~l~~lLaPi~P~~aEelw~~l~ 769 (912)
T PRK05743 745 ILEALVRWLAPILSFTAEEIWQYLP 769 (912)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhcc
Confidence 5566799999999999999999996
No 26
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=99.96 E-value=6.7e-28 Score=239.69 Aligned_cols=176 Identities=16% Similarity=0.222 Sum_probs=139.5
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcc-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcC----Ccc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEF-GNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQ----STL 75 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~-~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~----~~~ 75 (248)
||||+||||+|.+++++||+|++||||++.+.. ++|++|+++.+.+.+++ +.++++|..+++...+..+.. +..
T Consensus 721 MSKSlGNvIDP~evI~kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~-~l~klwN~~rF~~~~i~~~~~~~~~~f~ 799 (1205)
T PTZ00427 721 MSKRLKNYPDPLYILDKYGADSLRLYLINSVAVRAENLKFQEKGVNEVVKS-FILPFYHSFRFFSQEVTRYECLNKKQFL 799 (1205)
T ss_pred cccCCCCCCCHHHHHHhcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHH-HHHHHHHHHHHHHhccccccccccccCC
Confidence 999999999999999999999999999987664 79999999998877665 447888887776654432110 100
Q ss_pred cC----CCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH-HHhHHhhhcCCcccccCCcchHHHHHHHHH
Q 039609 76 VV----DSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISN-AGNSYMDEHVPWSRFKQGGAASEAAAKDLV 150 (248)
Q Consensus 76 ~~----~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~-~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~ 150 (248)
+. .......|+|+++.++++++.+.++|++|+|+.|+..|++|+. ++|+|++..++ ++.+.... +....+++
T Consensus 800 ~~~~~~~~~~~~~DrWILs~l~~li~~v~~~me~Y~f~~A~~~i~~Fi~~lsnwYIe~~K~-rl~~~~~~--~~~~~a~~ 876 (1205)
T PTZ00427 800 FNTDYIYKNDNIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFIENLTNWYIRLNRD-RMRGSLGE--ENCLQSLC 876 (1205)
T ss_pred cCcccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHcch-hhccCCCc--HHHHHHHH
Confidence 00 0123457999999999999999999999999999999999995 99999998875 22222111 12345678
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHhCC
Q 039609 151 IILEAMRIIAVALSPVTPNLCWRIYEQLGY 180 (248)
Q Consensus 151 ~~~~~l~~l~~lL~P~~P~~ae~i~~~Lg~ 180 (248)
++.++++.+++||+|||||+||+||++|+.
T Consensus 877 tL~~vL~~~~~LLaPf~PfiaEeiyq~L~~ 906 (1205)
T PTZ00427 877 TTYRTLHLFTVLMAPFTPFITEYIYQQLRR 906 (1205)
T ss_pred HHHHHHHHHHHHccccchHHHHHHHHHhhh
Confidence 889999999999999999999999999963
No 27
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=99.95 E-value=2.5e-27 Score=232.27 Aligned_cols=156 Identities=17% Similarity=0.290 Sum_probs=126.8
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||||+|.+++++||+|++||||++.+++++|.+|+++.+....| +.++++|++.++. +...+ ..
T Consensus 578 MSKS~GNvVdp~eii~~yGaDalRl~L~~~~~~~~D~~fs~~~v~~~~~--~l~r~~~~~~~~~-------~~~~~--~~ 646 (897)
T PRK12300 578 MSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELLQDADWREKEVESVRR--QLERFYELAKELI-------EIGGE--EE 646 (897)
T ss_pred ccCcCCCCCCHHHHHHHcChHHHHHHHHhCCCCCCCCccCHHHHHHHHH--HHHHHHHHHHHHh-------cCCCc--cc
Confidence 9999999999999999999999999999989999999999998766432 3445555444332 21111 12
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH-HHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVL-DISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRII 159 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~-~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l 159 (248)
....|+|+++.++.+++.+.++|++|+|+.|+..++ .+.+.+|+|++..+| ....++.++++.+
T Consensus 647 ~~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~~~n~Yi~~~k~---------------~~~~~l~~~l~~~ 711 (897)
T PRK12300 647 LRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLNDLRWYLRRVGE---------------ANNKVLREVLEIW 711 (897)
T ss_pred cCHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcch---------------HHHHHHHHHHHHH
Confidence 345799999999999999999999999999998875 667889999997654 1345677888899
Q ss_pred HHHhhccccHHHHHHHHHhCCCc
Q 039609 160 AVALSPVTPNLCWRIYEQLGYSN 182 (248)
Q Consensus 160 ~~lL~P~~P~~ae~i~~~Lg~~~ 182 (248)
+++|+|||||+||+||+.||.++
T Consensus 712 ~~lLaPf~P~~aEeiw~~L~~~~ 734 (897)
T PRK12300 712 IRLLAPFTPHLAEELWHKLGGEG 734 (897)
T ss_pred HHHHhhhhhHHHHHHHHHcCCCC
Confidence 99999999999999999998643
No 28
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=99.95 E-value=6.2e-27 Score=230.45 Aligned_cols=159 Identities=16% Similarity=0.225 Sum_probs=132.3
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||||+|.+++++||+|++||||++.+++++|++|+++.+.+..|. .++++|++.++.... ..... ..
T Consensus 621 MSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~~--l~~l~n~~~~~~~~~----~~~~~--~~ 692 (938)
T TIGR00395 621 MSKSKGNVLTLEQAVEKFGADVARLYIADAAETVQDADWKESEVEGTILR--LERLYEFAEEITKES----NLETG--EE 692 (938)
T ss_pred ccCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH--HHHHHHHHHHHHhhc----ccCCC--cc
Confidence 99999999999999999999999999999889999999999999988764 578888888865421 11111 11
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLSLSSAC-EAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRII 159 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al-~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l 159 (248)
....|+|+++.++.++.++.++|++|+|+.|+ ..+++|+..+|+|+...++ +.. .++.++++.+
T Consensus 693 ~~~~D~wlls~l~~~i~~v~~a~e~~~~~~Al~~~l~~~~~~~n~Yl~~~~~------------~~~---~~l~~~l~~~ 757 (938)
T TIGR00395 693 TSFIDRWLESRMNAAIKETYEAMENFQTRKAVKYALFDLQADVDWYRRRGGV------------NHK---DVLARYLETW 757 (938)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhCcc------------hHH---HHHHHHHHHH
Confidence 24578999999999999999999999999999 7799999999999874321 112 2466788899
Q ss_pred HHHhhccccHHHHHHHHHhCCCc
Q 039609 160 AVALSPVTPNLCWRIYEQLGYSN 182 (248)
Q Consensus 160 ~~lL~P~~P~~ae~i~~~Lg~~~ 182 (248)
++||+|||||+||+||++||.++
T Consensus 758 ~~LLaP~~P~~aEeiw~~Lg~~~ 780 (938)
T TIGR00395 758 IKLLAPFAPHFAEEMWEEVGNEG 780 (938)
T ss_pred HHHhcCcccHHHHHHHHHcCCCC
Confidence 99999999999999999998643
No 29
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1e-25 Score=210.59 Aligned_cols=170 Identities=21% Similarity=0.254 Sum_probs=139.1
Q ss_pred CCCCcCCccChhHHHH------------------------------hc-------ChhHHHHHHhccCcccCCCCCCHHH
Q 039609 1 MGKSLGNTLEPNELVH------------------------------NF-------GSDAVRYFFLKEVEFGNDGDYSEDR 43 (248)
Q Consensus 1 MSKS~GNvi~p~dli~------------------------------~y-------g~D~lR~~ll~~~~~~~d~~fs~~~ 43 (248)
||||+||||||.|+|+ .| |.|+|||.|++...-+.|++++..+
T Consensus 594 MSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~r 673 (995)
T KOG0432|consen 594 MSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLR 673 (995)
T ss_pred cchhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHH
Confidence 9999999999999998 35 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCC----CcCc-hhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 039609 44 FIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVD----SAVA-AEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDI 118 (248)
Q Consensus 44 l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~----~~~~-~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l 118 (248)
+... ..++|++||...+++....+. .+|.. .... ..|.|++++++..++.+...|+.|+|+.|..++..|
T Consensus 674 v~g~--r~FcNKlWNa~rF~l~~lg~~---~~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~~~~~~~~f~~at~a~~~F 748 (995)
T KOG0432|consen 674 VEGY--RHFCNKLWNATRFALQRLGEN---FVPSPTEDLSGNESLVDEWILSRLAEAVEEVNESLEARNFHLATSALYAF 748 (995)
T ss_pred HhhH--HHHHHHHHHHHHHHHHhcccC---CCCCcccccCCCcchhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 8873 679999999999998764432 22321 1112 279999999999999999999999999999999999
Q ss_pred H--HHHhHHhhhcCCcccccCCcch-HHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHhCC
Q 039609 119 S--NAGNSYMDEHVPWSRFKQGGAA-SEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGY 180 (248)
Q Consensus 119 ~--~~~n~yl~~~kpW~l~k~~~~~-~~~~~~~l~~~~~~l~~l~~lL~P~~P~~ae~i~~~Lg~ 180 (248)
. ++|..|++..|| +++++... ...+.++|+.| +....++|+||||+++|++||+|..
T Consensus 749 wl~~lCDVYlE~~Kp--~l~~~~~~~~~~a~~vL~~~---ld~gLrll~PfMPFvtEel~qrlP~ 808 (995)
T KOG0432|consen 749 WLYDLCDVYLEATKP--LLWGDSEALAYEARRVLYRC---LDNGLRLLHPFMPFITEELWQRLPR 808 (995)
T ss_pred HHHHHHHHHHHHhhH--HhcCCcHHHHHHHHHHHHHH---HHHHHHHhcCcccccHHHHHHhccc
Confidence 7 799999999998 55554421 22234455555 4567999999999999999999953
No 30
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=99.93 E-value=2.3e-25 Score=216.34 Aligned_cols=154 Identities=23% Similarity=0.385 Sum_probs=126.3
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||+|+|.+++++||+|++|||+++.+++++|++|+++.+.+.. .+.++++|++.+..... ++ .. ..
T Consensus 571 MSKS~GN~i~p~~~i~~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~--~~l~kl~~~~~~~~~~~----~~-~~--~~ 641 (805)
T PRK00390 571 MSKSKGNVVDPDDIIEKYGADTARLFEMFAGPPEKDLEWSDSGVEGAY--RFLQRVWRLVVDAKGEA----GA-LD--VA 641 (805)
T ss_pred eCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCccCCcccCHHHHHHHH--HHHHHHHHHHHHhhhcc----cc-cC--cc
Confidence 999999999999999999999999999988899999999999998764 45788888877632211 11 11 11
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIA 160 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l~ 160 (248)
....|+|+++.++.++++++++|++|+|+.|++.+++|++..++|.+ ... ..++.++++.++
T Consensus 642 ~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~n~lsk~~~---------------~~~---~~~l~~~l~~l~ 703 (805)
T PRK00390 642 ALSEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKAED---------------EQD---KAVLREALEILV 703 (805)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH---------------HHH---HHHHHHHHHHHH
Confidence 23578999999999999999999999999999999999987777751 011 224566778889
Q ss_pred HHhhccccHHHHHHHHHhCCC
Q 039609 161 VALSPVTPNLCWRIYEQLGYS 181 (248)
Q Consensus 161 ~lL~P~~P~~ae~i~~~Lg~~ 181 (248)
+||+|||||+||+||+.||.+
T Consensus 704 ~lLaPf~P~iaEElw~~L~~~ 724 (805)
T PRK00390 704 RLLAPFAPHLAEELWEKLGHE 724 (805)
T ss_pred HHHhhhhhHHHHHHHHHcCCC
Confidence 999999999999999999854
No 31
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=99.93 E-value=4.8e-25 Score=214.72 Aligned_cols=155 Identities=23% Similarity=0.382 Sum_probs=125.6
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||+|+|.+++++||+|++|||+++.+++++|++|+++.+... ..+.++++|++.++...+.. .. .++ ...
T Consensus 605 MSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~--~~~l~kl~~~~~~~~~~~~~-~~-~~~-~~~ 679 (842)
T TIGR00396 605 MSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASLEWNDSGLEGA--RRFLDRVWNLFYNILGELDG-KT-YLT-PTI 679 (842)
T ss_pred hhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCCCCccCHHHHHHH--HHHHHHHHHHHHHHHhhhcc-cc-cCC-ccc
Confidence 99999999999999999999999999998789999999999999765 34678999998876544321 11 011 112
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLS-LSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRII 159 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~-~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l 159 (248)
....|+|+++.++.++++++++|++|+ |+.|++.+|+|++...+|.. . .++.+++..+
T Consensus 680 l~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~n~L~~~~~---------------~------~~l~~~l~~l 738 (842)
T TIGR00396 680 LEEAQKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILLNALYKAKK---------------D------ALYLEYLKGF 738 (842)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhh---------------H------HHHHHHHHHH
Confidence 345799999999999999999999988 99999999999975444311 0 1355677888
Q ss_pred HHHhhccccHHHHHHHHHhCCC
Q 039609 160 AVALSPVTPNLCWRIYEQLGYS 181 (248)
Q Consensus 160 ~~lL~P~~P~~ae~i~~~Lg~~ 181 (248)
++||+||+||+||+||+.||..
T Consensus 739 l~lLaPf~PhiaEElW~~l~~~ 760 (842)
T TIGR00396 739 LTVLSPFAPHLAEELWEKLGSE 760 (842)
T ss_pred HHHHhhhhhHHHHHHHHHhCCC
Confidence 9999999999999999999854
No 32
>PLN02563 aminoacyl-tRNA ligase
Probab=99.92 E-value=1.5e-24 Score=212.29 Aligned_cols=153 Identities=20% Similarity=0.296 Sum_probs=117.2
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||||+|.++|++||+|++|||+|..++..+|.+|+.+.+.... .+.++++|++.........+.++.++ .
T Consensus 724 MSKSKGNvVdP~eiI~kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~~--rfL~rlwn~~~~~~~~~~~~~~~~~~---~ 798 (963)
T PLN02563 724 MSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPLRDSKTWSTSGVEGVH--RFLGRTWRLVVGAPLPDGSFRDGTVV---T 798 (963)
T ss_pred cccccCCcCCHHHHHHHcCcHHHHHHHHhCCCcccccccCHHHHHHHH--HHHHHHHHHHHHhhhcccccCccccc---c
Confidence 999999999999999999999999999998999999999988887653 24566666654321000000011111 1
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIA 160 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l~ 160 (248)
....|.+++..++.++++++++|++|+|+.|++.+|+|++..+. |. . ...++++.++
T Consensus 799 ~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~n~l~~-------~~-----~-----------~~~~~l~~ll 855 (963)
T PLN02563 799 DEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTNAAYK-------WD-----K-----------VPREAIEPFV 855 (963)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhC-------ch-----H-----------HHHHHHHHHH
Confidence 12357899999999999999999999999999999999875432 21 0 1235677889
Q ss_pred HHhhccccHHHHHHHHHhCCC
Q 039609 161 VALSPVTPNLCWRIYEQLGYS 181 (248)
Q Consensus 161 ~lL~P~~P~~ae~i~~~Lg~~ 181 (248)
+||+|||||+||+||++||..
T Consensus 856 ~LLaPf~PhiaEELW~~Lg~~ 876 (963)
T PLN02563 856 LLLSPYAPHLAEELWFRLGHS 876 (963)
T ss_pred HHHHhhhhhHHHHHHHHcCCC
Confidence 999999999999999999864
No 33
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.92 E-value=4.9e-24 Score=163.05 Aligned_cols=128 Identities=34% Similarity=0.548 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhcCCcccCCCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhh
Q 039609 49 NAHLANTIGNLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDE 128 (248)
Q Consensus 49 n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~ 128 (248)
|++|++++||+++|+.+++.+.+++.+|........|.++.+.+++++.++..+|++|+++.|++.+++|++.+|+|++.
T Consensus 2 n~~l~~~~gnll~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~n~y~~~ 81 (129)
T cd07957 2 NSELANNLGNLVNRTLNMASKYFGGVVPEFGGLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANKYIDE 81 (129)
T ss_pred cHHHHhhHhhHHHHHHHHHHHHcCCcCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhcc
Confidence 67899999999999999999988887775443456789999999999999999999999999999999999999999999
Q ss_pred cCCcccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHh
Q 039609 129 HVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQL 178 (248)
Q Consensus 129 ~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~ae~i~~~L 178 (248)
.+||.+.+++ +.+++.++++.++++++.++++|+||||++|++||+.|
T Consensus 82 ~kpw~~~~~~--~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 82 TAPWKLAKEE--DPERLATVLYVLLELLRILAILLSPFMPETAEKILDQL 129 (129)
T ss_pred CCCHHHHccC--CHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHhC
Confidence 9999987642 23446678899999999999999999999999999975
No 34
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.6e-23 Score=198.22 Aligned_cols=153 Identities=22% Similarity=0.396 Sum_probs=117.4
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||||+|++++++||+|++|+|+|..+|..+|.+|+++.+... ..+++|+..++..........
T Consensus 580 MSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~---------~rfL~r~~~l~~~~~~~~~~~--- 647 (814)
T COG0495 580 MSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGA---------RRFLQRVWNLVKEHLEKLVEE--- 647 (814)
T ss_pred cccccCCCCCHHHHHHHhCchHHHHHHHhhCChhhCCCCChhhhHHH---------HHHHHHHHHHHHHhhhccccc---
Confidence 99999999999999999999999999999999999999999988664 334455554444433211110
Q ss_pred Cchhc-HHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEG-TAFKDTVEKLVETARGHYEN-LSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRI 158 (248)
Q Consensus 81 ~~~~d-~~l~~~l~~~~~~~~~~~e~-~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~ 158 (248)
....+ ..+...+++++..+.+.++. +.++.++..+|+|++...+|...... .+ .++.+++..
T Consensus 648 ~~~~~~~~~~~~~h~~~~~v~~~~e~~~~~nt~i~~~m~l~N~l~~~~~~~~~-----------~~-----~~l~~~l~~ 711 (814)
T COG0495 648 LTKEQGKEDRWLLHRTIKKVTEDFEARQTFNTAIAALMELLNALRKYLRRTEG-----------DR-----KVLREALET 711 (814)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----------hH-----HHHHHHHHH
Confidence 01111 34455567788888888987 88999999999999999998775321 01 345667788
Q ss_pred HHHHhhccccHHHHHHHHHhCCC
Q 039609 159 IAVALSPVTPNLCWRIYEQLGYS 181 (248)
Q Consensus 159 l~~lL~P~~P~~ae~i~~~Lg~~ 181 (248)
+++||+||+||+||++|+.||..
T Consensus 712 ~v~lLaP~aPH~aEElW~~lg~~ 734 (814)
T COG0495 712 WVRLLAPFAPHIAEELWEELGNE 734 (814)
T ss_pred HHHHhcccccHHHHHHHHHhcCC
Confidence 99999999999999999999963
No 35
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=3.8e-23 Score=190.40 Aligned_cols=184 Identities=18% Similarity=0.285 Sum_probs=146.4
Q ss_pred CCCCcCCccChhHHHHh------cChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCC-
Q 039609 1 MGKSLGNTLEPNELVHN------FGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQS- 73 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~------yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~- 73 (248)
||||+||||+|..+++. ||+|+||||++. +....|+..++..+.+. .+-.-++.|.++++++.+.++.++
T Consensus 614 MSKSlGNVidP~~v~~G~~k~payGaD~LR~WVA~-~~~t~d~~iGp~il~qv--~e~l~K~R~T~RfllGnl~d~~~~~ 690 (937)
T KOG0433|consen 614 MSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVAG-SENTGESKIGPKILDQV--DEKLIKFRNTFRFLLGNLQDFDGKQ 690 (937)
T ss_pred hhhcccCcCCHHHHhCCcccCCCccccceeeeeec-ccccCceecCHHHHHHH--HHHHHHHHhHHHHHhhcccccCCcc
Confidence 99999999999999998 999999999995 88889999999999876 345678999999999888776544
Q ss_pred -cccCCCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--HHHhHHhhhcCCcccccCCcch-HHH-HHHH
Q 039609 74 -TLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDIS--NAGNSYMDEHVPWSRFKQGGAA-SEA-AAKD 148 (248)
Q Consensus 74 -~~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~--~~~n~yl~~~kpW~l~k~~~~~-~~~-~~~~ 148 (248)
.+|. ..+...|+.++..+.++.+++.+.|++|+|++++..+..|+ .+++.|++..|. +|+++...+ .++ +.++
T Consensus 691 ~~~p~-~dl~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~YfdivKD-RLY~~~~~s~~rrs~Qtt 768 (937)
T KOG0433|consen 691 VKFPL-KDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKD-RLYCDKVGSESRRSAQTT 768 (937)
T ss_pred ccccc-hhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHhh-hhhcCCCCcHHHHHHHHH
Confidence 2342 23455799999999999999999999999999999999997 589999999998 677764332 222 3444
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHhCCCcccccCCCccc
Q 039609 149 LVIILEAMRIIAVALSPVTPNLCWRIYEQLGYSNEQFGNAAWSD 192 (248)
Q Consensus 149 l~~~~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~w~~ 192 (248)
|+.+ +..++..++||+||+++++|+.|....+..-...|.+
T Consensus 769 L~h~---l~~l~~~iaPIlP~LaeEvwq~lP~~~~~~f~~k~~~ 809 (937)
T KOG0433|consen 769 LHHL---LHNLAHIISPILPHLAEEVWQHLPGSHEKIFRLKWED 809 (937)
T ss_pred HHHH---HHHHHHHHccccHHHHHHHHHhCCCCCCcccccCccc
Confidence 5554 4556899999999999999999985433222334543
No 36
>PLN02959 aminoacyl-tRNA ligase
Probab=99.90 E-value=9.1e-23 Score=202.87 Aligned_cols=160 Identities=15% Similarity=0.258 Sum_probs=113.5
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||||+|.+++++||+|++||||+..++..+|.+|+++.+...+ ..+.|++..+...+.. ....+....
T Consensus 719 MSKSkGNvI~p~diI~kyGADalRl~la~~~~~~~D~nF~~k~~n~~~-----~~l~n~~~~~~~~~~~--~~~~~~~~~ 791 (1084)
T PLN02959 719 MSKSTGNFLTLRQAIEEFSADATRFALADAGDGVDDANFVFETANAAI-----LRLTKEIAWMEEVLAA--ESSLRTGPP 791 (1084)
T ss_pred ccccCCCcCCHHHHHHHhCchHHHHHHhhcCCccCCCCccHHHHHHHH-----HHHHHHHHHHHHhhhh--hcccCCccc
Confidence 999999999999999999999999999998888999999998765432 3344443332222211 001111111
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHH-HHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEA-VLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRII 159 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~-i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l 159 (248)
....|+|+++.++.++.++.++|++|+|+.|++. +++|...-.+|.. +... . .. ...++..+++.+
T Consensus 792 ~~~~D~wils~l~~~i~~v~~a~e~y~f~~A~~~~~Yel~~~k~~yr~-------~~~~-~--~~---~~~~L~~vl~~~ 858 (1084)
T PLN02959 792 STYADRVFENEINIAIAETEKNYEAMMFREALKSGFYDLQAARDEYRL-------SCGS-G--GM---NRDLVWRFMDVQ 858 (1084)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhHHHHhh-------cccc-c--hH---HHHHHHHHHHHH
Confidence 3467999999999999999999999999999987 3334333333322 1111 1 11 123456667888
Q ss_pred HHHhhccccHHHHHHHHHh-CC
Q 039609 160 AVALSPVTPNLCWRIYEQL-GY 180 (248)
Q Consensus 160 ~~lL~P~~P~~ae~i~~~L-g~ 180 (248)
++||+|||||+||+||+.| |.
T Consensus 859 l~LLaP~~PfiaEEiW~~l~~~ 880 (1084)
T PLN02959 859 TRLITPICPHYAEHVWREILKK 880 (1084)
T ss_pred HHHHhhhhhHHHHHHHHhccCC
Confidence 9999999999999999999 54
No 37
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.84 E-value=6.8e-20 Score=137.94 Aligned_cols=114 Identities=16% Similarity=0.198 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHhhHhhcCCcccCCCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHH-HHHHHHHhHHhhh
Q 039609 50 AHLANTIGNLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAV-LDISNAGNSYMDE 128 (248)
Q Consensus 50 ~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i-~~l~~~~n~yl~~ 128 (248)
.+++++++|+++|+.+++.+++++..|. ......|+++++.++.++.++.++|++|+|+.|++.+ +++.+.+|+|++.
T Consensus 3 ~~~~~~~~~~l~R~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~~~~~~Y~~~ 81 (117)
T cd07959 3 EEEANSAILRLERFYELAEELIETEGEL-EELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDLDWYRER 81 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCc-cccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999998876665553 2345678999999999999999999999999999996 9999999999999
Q ss_pred cCCcccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHh
Q 039609 129 HVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQL 178 (248)
Q Consensus 129 ~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~ae~i~~~L 178 (248)
.+||. ..+++.++++.++++|+|||||+||+||+.|
T Consensus 82 ~~~~~--------------~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 82 GGAGM--------------NKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred hCccc--------------hHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 88871 1235677889999999999999999999875
No 38
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1e-19 Score=166.70 Aligned_cols=160 Identities=20% Similarity=0.307 Sum_probs=121.3
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccC---
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVV--- 77 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~--- 77 (248)
||||++|+|+|.+++.+||+|++|+|++..+|+..+++|++..+....+ +..++++++.++...= .++..+.
T Consensus 618 MSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~r--wl~riw~l~~~~~~ar---~~g~~~d~~~ 692 (876)
T KOG0435|consen 618 MSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKR--WLQRIWALVSQILQAR---DDGKAKDLKK 692 (876)
T ss_pred hhhcccCCCCHHHHHHHhCchHHHHHHHhhCCcccccccccccchhHHH--HHHHHHHHHHHHHHHH---hcCCcccccc
Confidence 9999999999999999999999999999999999999999999877643 4566777776665431 1222111
Q ss_pred -CCcCchhcHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHH
Q 039609 78 -DSAVAAEGTAFKDTVEKLVETARGHYE-NLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEA 155 (248)
Q Consensus 78 -~~~~~~~d~~l~~~l~~~~~~~~~~~e-~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~ 155 (248)
.......++.+.+..+.++.+++++|+ .+.++.||..+|.|.+....-..... +..+ ....+
T Consensus 693 ~td~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~ltN~l~~a~k~~~----~h~~------------~~~~a 756 (876)
T KOG0435|consen 693 LTDGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLTNALKKALKIVL----VHSP------------EFERA 756 (876)
T ss_pred cccccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----hcCh------------HHHHH
Confidence 111234566888999999999999998 78899999999999875544333221 1111 12335
Q ss_pred HHHHHHHhhccccHHHHHHHHHhCCC
Q 039609 156 MRIIAVALSPVTPNLCWRIYEQLGYS 181 (248)
Q Consensus 156 l~~l~~lL~P~~P~~ae~i~~~Lg~~ 181 (248)
+..+.+||+|+.||+|+|+|..|+.+
T Consensus 757 l~~lv~mlaP~aPh~asE~Ws~l~~~ 782 (876)
T KOG0435|consen 757 LEALVIMLAPFAPHVASELWSALAND 782 (876)
T ss_pred HHHHHHHHhccCchhHHHHHHHHhcc
Confidence 56679999999999999999999954
No 39
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.80 E-value=2.1e-18 Score=163.57 Aligned_cols=121 Identities=17% Similarity=0.284 Sum_probs=100.5
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||+|+|.|++++||+|++||||++ .++++|++||++.+.+..+.+ +.+.|++.|+.+.+.... .+....
T Consensus 316 MSKSLGNfItp~dlLekygaDaLR~~lLs-~~~~~dldFS~e~l~~a~~~~--~~l~n~~~rl~s~l~~~~---~~~~~~ 389 (651)
T PTZ00399 316 MSKSLKNFITIRQALSKYTARQIRLLFLL-HKWDKPMNYSDESMDEAIEKD--KVFFNFFANVKIKLRESE---LTSPQK 389 (651)
T ss_pred hhhcCCCcccHHHHHHHcChHHHHHHHHh-cCCCCCCccCHHHHHHHHHHH--HHHHHHHHHHHHHHhhcc---cccccc
Confidence 99999999999999999999999999997 699999999999998887663 557777777665443211 111111
Q ss_pred CchhcHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHhHHhh
Q 039609 81 VAAEGTAFKDTVEKLVETARGHY-ENLSLSSACEAVLDISNAGNSYMD 127 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~al~~i~~l~~~~n~yl~ 127 (248)
....|.++...+..+...+.++| ++|+++.|+..|++|++.+|.|++
T Consensus 390 ~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv~~~N~yi~ 437 (651)
T PTZ00399 390 WTQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKLISATNTYLN 437 (651)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 23567889999999999999999 689999999999999999999997
No 40
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1e-18 Score=160.44 Aligned_cols=175 Identities=17% Similarity=0.242 Sum_probs=141.2
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcc--cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCC-ccc-
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEF--GNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQS-TLV- 76 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~--~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~-~~~- 76 (248)
||||+.|.-+|..++++||+|++|+||+. +|. ...+.|.++.+.+.+.. +.-.++|.+.+..........+ ..+
T Consensus 602 MSKrlkNYPdP~~iinkYGADalRlYLIn-SPVvraE~LkFkeeGVrevvk~-v~lPW~NsyrF~~qn~~~~~~~~g~~f 679 (1070)
T KOG0434|consen 602 MSKRLKNYPDPSLIINKYGADALRLYLIN-SPVVRAENLKFKEEGVREVVKD-VLLPWYNSYRFLVQNAALLKKETGKDF 679 (1070)
T ss_pred HhhhhhcCCCHHHHHHhhcchheeeeeec-CccccccccccchhhHHHHHHh-hhhhhhHHHHHHHHHHHHhccccCCcc
Confidence 99999999999999999999999999997 553 47899999999988754 5567888887776655433221 111
Q ss_pred --CC--CcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH-HHHhHHhhhcCCcccccCCcchHHHHHHHHHH
Q 039609 77 --VD--SAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDIS-NAGNSYMDEHVPWSRFKQGGAASEAAAKDLVI 151 (248)
Q Consensus 77 --~~--~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~-~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~ 151 (248)
.. ...+..|+|+.+..+.++.-+++.|+.|++..++-.+..|+ .+.|+|+.-.+- ..|.+.. ...+...|.+
T Consensus 680 ~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfiD~LTNwYiR~nRr--rlkGe~G-~~d~~~AL~~ 756 (1070)
T KOG0434|consen 680 VFDDSVTSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFIDELTNWYIRFNRR--RLKGENG-EHDCHNALNV 756 (1070)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHheehhhhHHHHHHHHHHhhhhheehhhh--hhcCCCc-hHHHHHHHHH
Confidence 11 12356899999999999999999999999999999999999 589999986552 4453322 3457778899
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHHHhCC
Q 039609 152 ILEAMRIIAVALSPVTPNLCWRIYEQLGY 180 (248)
Q Consensus 152 ~~~~l~~l~~lL~P~~P~~ae~i~~~Lg~ 180 (248)
+.+++..++++|+||.|+++|.||+.|..
T Consensus 757 Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~ 785 (1070)
T KOG0434|consen 757 LFEVLFTLVRVMAPFTPFFTEYIYQNLKK 785 (1070)
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999963
No 41
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.77 E-value=2.5e-17 Score=133.58 Aligned_cols=138 Identities=15% Similarity=0.168 Sum_probs=102.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCccc-CCCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 039609 39 YSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLV-VDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLD 117 (248)
Q Consensus 39 fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~-~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~ 117 (248)
++.+.+.+. .+++++++|.++++...+........+ ........|+|+++.++.++.++.++|++|+|+.|+..+++
T Consensus 1 i~~~~~~~~--~~~~~Kl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~ 78 (180)
T cd07960 1 ISDEILKQV--AEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNN 78 (180)
T ss_pred CCHHHHHHH--HHHHHHHHHHHHHHHHcccCCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 456666664 457899999998876544321111110 11234567999999999999999999999999999999999
Q ss_pred HHH--HHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHhCC
Q 039609 118 ISN--AGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGY 180 (248)
Q Consensus 118 l~~--~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~ae~i~~~Lg~ 180 (248)
|+. .||.|++..+||......++ ..+ .....++..+++.++++|+|||||+||+||++||.
T Consensus 79 f~~~~l~n~Yi~~~k~~~~~~~~~~-~~~-~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~ 141 (180)
T cd07960 79 FCTVDLSAFYLDIIKDRLYCDAKDS-LER-RSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPG 141 (180)
T ss_pred HHHHHHHHHHHHhcccceecCCCCC-HHH-HHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhccc
Confidence 994 89999999999975311111 122 22445667778999999999999999999999985
No 42
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.77 E-value=1.9e-17 Score=128.08 Aligned_cols=132 Identities=17% Similarity=0.160 Sum_probs=100.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCccc-CCCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 039609 39 YSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLV-VDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLD 117 (248)
Q Consensus 39 fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~-~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~ 117 (248)
||++.+... ..+.++++|++.++...+... ...+ ..+.....|.++...+++++.++..+|++|+|++|+..+++
T Consensus 1 ~~~~~~~~~--~~~l~k~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~ 76 (135)
T cd07962 1 FDEKRVEGG--RNFCNKLWNAARFVLMNLEDD--DEPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYE 76 (135)
T ss_pred CCHHHHHHH--HHHHHHHHHHHHHHHHccccc--CccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 566666553 346688999888653311110 1100 01223456789999999999999999999999999999999
Q ss_pred HHH--HHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHh
Q 039609 118 ISN--AGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQL 178 (248)
Q Consensus 118 l~~--~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~ae~i~~~L 178 (248)
++. .+|+|++..+||.+. .+ .+++..+++++.++++.++++|+|||||+|++||++|
T Consensus 77 ~~~~~~~N~Yi~~~~pW~~~-~~---~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 77 FFWNDFCDWYLELVKPRLYG-ED---EEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHHHhHHHHHHhhHHHcC-CC---hHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 996 899999999999873 22 2345667889999999999999999999999999875
No 43
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.75 E-value=2.2e-17 Score=123.95 Aligned_cols=109 Identities=18% Similarity=0.360 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhhHhhcCCcccCC--CcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCC
Q 039609 54 NTIGNLLNRTLGLLKKNCQSTLVVD--SAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVP 131 (248)
Q Consensus 54 ~~l~N~~~r~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kp 131 (248)
....|+++|+.+++.+++++.+|.. +.....|+++.+.++++++++.++|++|+|++|++.++++++.+|+|++..+|
T Consensus 7 ~~~~n~l~R~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~~~~~~~p 86 (117)
T cd07958 7 EGAYRFLNRVWRLVTELAEALAAPAAAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKYKKKDAQ 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhccccc
Confidence 3456777888777776665555431 23345789999999999999999999999999999999999999999886555
Q ss_pred cccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHh
Q 039609 132 WSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQL 178 (248)
Q Consensus 132 W~l~k~~~~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~ae~i~~~L 178 (248)
.++++.++++.++++|+||||++|++||++|
T Consensus 87 ----------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 87 ----------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred ----------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 2356788889999999999999999999875
No 44
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.71 E-value=2.3e-16 Score=145.26 Aligned_cols=109 Identities=18% Similarity=0.339 Sum_probs=94.5
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||+|+|.|++++||+|++|||+++ ++++++++|+++.+.+..+ ..++++|++.++..
T Consensus 267 MSKS~GN~i~~~dll~~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~a~~--~~~rl~~~~~~~~~--------------- 328 (463)
T PRK00260 267 MSKSLGNFFTIRDLLKKYDPEVLRFFLLS-AHYRSPLNFSEEALEQAKK--ALERLYNALAETAL--------------- 328 (463)
T ss_pred ccCcCCCCCCHHHHHHHcCchHhHHHHHh-CCCCCCCccCHHHHHHHHH--HHHHHHHHHHHhhh---------------
Confidence 99999999999999999999999999997 8899999999999887654 36778887776531
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhHHhhh
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYE-NLSLSSACEAVLDISNAGNSYMDE 128 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e-~~~~~~al~~i~~l~~~~n~yl~~ 128 (248)
...|.++...+..+...+.++|+ +|+++.|+..|+++++.+|.|++.
T Consensus 329 -~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv~~~n~~~~~ 376 (463)
T PRK00260 329 -GEDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELAREINRALET 376 (463)
T ss_pred -ccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhc
Confidence 02356777888899999999995 999999999999999999999874
No 45
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.69 E-value=8.7e-16 Score=124.81 Aligned_cols=138 Identities=14% Similarity=0.197 Sum_probs=100.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh-cC-Ccc-cCCCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Q 039609 39 YSEDRFIKIVNAHLANTIGNLLNRTLGLLKKN-CQ-STL-VVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAV 115 (248)
Q Consensus 39 fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~-~~-~~~-~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i 115 (248)
||++.++... +.++++++|.+.++++.+... .+ ... .........|+|+++++++++.++.++|++|+|+.|++.+
T Consensus 1 ~s~~~v~~~~-~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l 79 (183)
T cd07961 1 FSEKGVREVV-RKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRAL 79 (183)
T ss_pred CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 6778876653 348899999998886532211 11 111 0112245689999999999999999999999999999999
Q ss_pred HHHHH-HHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHhCC
Q 039609 116 LDISN-AGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGY 180 (248)
Q Consensus 116 ~~l~~-~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~ae~i~~~Lg~ 180 (248)
+.|+. .++.|++..|+ .++..++. . .......++..+++.++++|+|||||+||+||+++|.
T Consensus 80 ~~f~~~~~~~Y~e~~K~-~~~~~~~~-~-~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~ 142 (183)
T cd07961 80 LEFIDELTNWYIRRNRK-RFWGEEGD-D-DKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRR 142 (183)
T ss_pred HHHHHHhhhhHhhhchH-HhcCCCCc-h-hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 99985 45899998765 22222211 1 1223455677888999999999999999999999974
No 46
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.65 E-value=1.4e-15 Score=143.31 Aligned_cols=127 Identities=16% Similarity=0.173 Sum_probs=108.6
Q ss_pred CCCCcCCccChh-----------------------HHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHH
Q 039609 1 MGKSLGNTLEPN-----------------------ELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIG 57 (248)
Q Consensus 1 MSKS~GNvi~p~-----------------------dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~ 57 (248)
||||+||+|+|. ++++.+|.|++|||+++.. ..+|.+|+++.+.+. ++++.+.++
T Consensus 373 mSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~vg~dAvRy~~L~~~-~~~d~~Fd~d~~~~~-~~n~~~yiq 450 (566)
T TIGR00456 373 MKTRRGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADAVGIGAVRYFDLSQN-RETHYVFDWDAMLSF-EGNTAPYIQ 450 (566)
T ss_pred CCccCCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceeeHHhhcC-CCCCceecHHHHhcc-CCCCchhHH
Confidence 999999999998 7778899999999999955 789999999988775 788999999
Q ss_pred HHHHHHHHhhHhhcCCcccCC----CcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhc
Q 039609 58 NLLNRTLGLLKKNCQSTLVVD----SAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEH 129 (248)
Q Consensus 58 N~~~r~~~~~~~~~~~~~~~~----~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~ 129 (248)
|...|+.+++.+...+.++.. ....+.+..+...+..+...+..++++++++.++..++++++.+|.|++..
T Consensus 451 Ya~aR~~SIlrK~~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La~~~N~yy~~~ 526 (566)
T TIGR00456 451 YAHARICSILRKADIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELASLFSSFYKAC 526 (566)
T ss_pred HHHHHHHHHHHhcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999887643322211 112345677888999999999999999999999999999999999999976
No 47
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.65 E-value=8e-16 Score=121.13 Aligned_cols=90 Identities=20% Similarity=0.416 Sum_probs=77.9
Q ss_pred cHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--HHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 039609 85 GTAFKDTVEKLVETARGHYENLSLSSACEAVLDIS--NAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVA 162 (248)
Q Consensus 85 d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~--~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l~~l 162 (248)
|+|+++.++.+++++.++|++|+|+.|+..++.|+ ..||+|++..+||...+.+... .. +.+++.++++.++++
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~---~~-~~~~l~~~l~~~~~l 76 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDES---RE-AQYTLYEILKILLIL 76 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHH---HH-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhH---HH-HHHHHHHHHHHHhhc
Confidence 68999999999999999999999999999999983 5789999999999765544322 23 667889999999999
Q ss_pred hhccccHHHHHHHHHh
Q 039609 163 LSPVTPNLCWRIYEQL 178 (248)
Q Consensus 163 L~P~~P~~ae~i~~~L 178 (248)
|+|||||+||+||++|
T Consensus 77 l~P~~P~~aEeiw~~l 92 (153)
T PF08264_consen 77 LSPFMPFIAEEIWQRL 92 (153)
T ss_dssp HTTTSHHHHHHHHHHC
T ss_pred cCCCCcHHHHHHHHHh
Confidence 9999999999999777
No 48
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=99.64 E-value=3.8e-17 Score=147.29 Aligned_cols=64 Identities=48% Similarity=0.827 Sum_probs=59.7
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTL 64 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~ 64 (248)
||||+||+|||.|++++||+|++||||++.+++.+|.+|+++.|.+++|++|++++||+++|++
T Consensus 328 ~SkS~gn~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R~~ 391 (391)
T PF09334_consen 328 MSKSRGNVIWPDDLLEEYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNRVL 391 (391)
T ss_dssp EETTTTESSBHHHHHHHH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHHHH
T ss_pred ccccCCcccCHHHHHHhCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhccC
Confidence 8999999999999999999999999999999999999999999999999999999999999975
No 49
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=1.2e-14 Score=130.77 Aligned_cols=108 Identities=21% Similarity=0.372 Sum_probs=85.0
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||+|++.|++++|++.++||||++ ++|+++++||++.+.++.+. ...+.|++.++..... . .+
T Consensus 269 MSKSLGNfiti~d~l~~~~p~~lR~~lls-~HYR~pl~fsee~L~~A~~~--l~rl~~~~~~~~~~~~----~-~~---- 336 (464)
T COG0215 269 MSKSLGNFITVRDLLKKYDPEVLRLFLLS-SHYRSPLDFSEELLEEAKKA--LERLYNALRRLRDLAG----D-AE---- 336 (464)
T ss_pred cccccCCeeEHHHHHhhcCHHHHHHHHHH-HHhCCccccCHHHHHHHHHH--HHHHHHHHHHHHhhcc----c-cc----
Confidence 99999999999999999999999999998 99999999999999987543 4666666666542110 0 00
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhHHhhh
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYE-NLSLSSACEAVLDISNAGNSYMDE 128 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e-~~~~~~al~~i~~l~~~~n~yl~~ 128 (248)
.. .+.+...++.++|+ +|+++.|+..++++++.+|..++.
T Consensus 337 ~~--------~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~~~~~~~~ 377 (464)
T COG0215 337 LA--------DLKEFEARFREALDDDFNTPKALAVLFELAKEINRLLEE 377 (464)
T ss_pred cc--------hhHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhhhhc
Confidence 00 34456667888896 999999999999999887766553
No 50
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=3e-15 Score=138.78 Aligned_cols=162 Identities=18% Similarity=0.277 Sum_probs=121.8
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||.||+.+..+.+++||+|+.|+.|+..+.--.|.||.+...... +-.+.+.+..+..++..... +.....
T Consensus 711 MSKSTGNfmTL~qaieKFgad~tRlalAdaGD~veDANF~ea~AnAa-----ILRLyt~~ew~eEm~~~~s~--LrtGp~ 783 (1080)
T KOG0437|consen 711 MSKSTGNFMTLEQAIEKFGADGTRLALADAGDGVEDANFVEANANAA-----ILRLYTYVEWIEEMCENRSS--LRTGPA 783 (1080)
T ss_pred hccccCCeeeHHHHHHHhCccceeeeeecccCCcccchhHHhcccHH-----HHHHHHHHHHHHHHHhhHHh--hccCch
Confidence 99999999999999999999999999999888889999988765433 34566777777666652211 111112
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHH-HHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEA-VLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRII 159 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~-i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l 159 (248)
....|+.+.+.++.++....++|+...|+.|+.. ++++...-..|-...- +. .... +++..+.+-
T Consensus 784 ~~FaDrvf~nemN~~i~~t~~aye~~~fk~aLK~Gfyd~qaArD~Yrel~g-------~~-----mh~d--Lv~r~ietq 849 (1080)
T KOG0437|consen 784 STFADRVFENEMNALIAKTERAYEDTLFKDALKYGFYDLQAARDMYRELCG-------EG-----MHRD--LVFRFIETQ 849 (1080)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhc-------cc-----ccHH--HHHHHHHHH
Confidence 2367899999999999999999999999999985 7888766556644321 11 1111 234456677
Q ss_pred HHHhhccccHHHHHHHHHhCCCcc
Q 039609 160 AVALSPVTPNLCWRIYEQLGYSNE 183 (248)
Q Consensus 160 ~~lL~P~~P~~ae~i~~~Lg~~~~ 183 (248)
+.||+||.||+|+.||+.++.++.
T Consensus 850 tlLLaPi~Ph~aeyiw~~~~~~~~ 873 (1080)
T KOG0437|consen 850 TLLLAPICPHLAEYIWRTVLKKNF 873 (1080)
T ss_pred HHHHhccchHHHHHHHHHhccCCc
Confidence 999999999999999999987654
No 51
>PLN02946 cysteine-tRNA ligase
Probab=99.58 E-value=1.1e-14 Score=135.06 Aligned_cols=120 Identities=18% Similarity=0.193 Sum_probs=90.8
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||+|++.|++++||+|++|||+++ ++|+++++||++.+.+..+. ...+.+.+.|+...+...... ....
T Consensus 324 MSKSlGN~itl~dll~~y~~dalR~~lLs-~hyr~~l~fs~e~L~~a~~~--l~~l~~~~~~~~~~l~~~~~~-~~~~-- 397 (557)
T PLN02946 324 MSKSLGNFFTIRQVIDLYHPLALRLFLLG-THYRSPINYSDVQLESASER--IFYIYQTLHDCEESLQQHDST-FEKD-- 397 (557)
T ss_pred cCCcCCCcCCHHHHHHhcCccceeeeeec-cCCCCCcEecHHHHHHHHHH--HHHHHHHHHHHHHHhhhhccc-cccc--
Confidence 99999999999999999999999999998 88999999999999877432 456777777765443321100 0000
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhHHhhh
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYE-NLSLSSACEAVLDISNAGNSYMDE 128 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e-~~~~~~al~~i~~l~~~~n~yl~~ 128 (248)
..+..+...+..+...+.++|+ +|+++.|+..|+++++.+|.+++.
T Consensus 398 --~~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~vk~~N~~~~~ 444 (557)
T PLN02946 398 --SVPPDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLKTINDLLHT 444 (557)
T ss_pred --ccchhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhh
Confidence 0111122345566788999996 999999999999999999999864
No 52
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.55 E-value=5.2e-14 Score=129.58 Aligned_cols=109 Identities=19% Similarity=0.255 Sum_probs=84.6
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||+|+|.|++++||+|++|||+++ ++++++++|+++.+.+..+ ..++++|++.++..... +.......
T Consensus 266 MSKS~GN~i~~~dll~~~~~dalR~~ll~-~~~~~~l~fs~~~l~~a~~--~~~rl~~~~~~~~~~~~----~~~~~~~~ 338 (465)
T TIGR00435 266 MSKSLGNFFTVRDVLKNYDPEILRYFLLS-VHYRSPLDFSEELLEAAKN--ALERLYKALRVLDTTLA----YSGNQSLN 338 (465)
T ss_pred ccccCCCcCCHHHHHHHCCHHHHHHHHHh-CCCCCCCccCHHHHHHHHH--HHHHHHHHHHHHHhhhc----cccccccc
Confidence 99999999999999999999999999997 7899999999999988754 36788888887643221 10000000
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHh
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYE-NLSLSSACEAVLDISNAGN 123 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e-~~~~~~al~~i~~l~~~~n 123 (248)
+......+...+.++|+ +++++.|+..|+++++.+|
T Consensus 339 -------~~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n 375 (465)
T TIGR00435 339 -------KFPDEKEFEARFVEAMDDDLNTANALAVLFELAKSIN 375 (465)
T ss_pred -------cchhHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhh
Confidence 01122345677888896 8999999999999999988
No 53
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.50 E-value=1.9e-13 Score=128.17 Aligned_cols=104 Identities=18% Similarity=0.332 Sum_probs=80.5
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||+|+|.+++++||+|++|||+++ ++|+++++||++.+.++.+. .+++.+++.++.. . .+
T Consensus 509 MSKSLGN~it~~dlLe~ygpdalRl~lLs-shYRspL~fS~e~Le~Ak~~--l~Rl~~~l~~~~~-------~-~~---- 573 (699)
T PRK14535 509 MSKSLGNFFTIREVLKQYDPEVVRFFILR-AHYRSPLNYSDAHLDDAKGA--LTRLYTTLKNTPA-------A-EF---- 573 (699)
T ss_pred cCCCCCCcCCHHHHHHhCCHHHHHHHHHc-CCCCCCCCcCHHHHHHHHHH--HHHHHHHHHhhhh-------c-cc----
Confidence 99999999999999999999999999998 89999999999999886432 3444444433210 0 00
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYE-NLSLSSACEAVLDISNAGNSY 125 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e-~~~~~~al~~i~~l~~~~n~y 125 (248)
.+...+..+...+.++|+ +|+++.|+..|+++++.+|.+
T Consensus 574 ------~~~~~l~~~~~~f~~AL~DDlntp~Ala~L~~lvk~iN~~ 613 (699)
T PRK14535 574 ------MLSENVNDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKT 613 (699)
T ss_pred ------hhhhhHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHH
Confidence 011233456678889996 899999999999999988875
No 54
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=99.50 E-value=4.7e-13 Score=99.84 Aligned_cols=108 Identities=19% Similarity=0.260 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHhhHhhcCCcccCC--CcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCC
Q 039609 54 NTIGNLLNRTLGLLKKNCQSTLVVD--SAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVP 131 (248)
Q Consensus 54 ~~l~N~~~r~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kp 131 (248)
.+++|.+.|+..++.++..+..|.. ......|.|+++.++.++.++.++|++|+++.|+..+++|+...|+|++..+|
T Consensus 8 ~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~y~~~~~p 87 (117)
T cd07375 8 RAFLNRLYRLLSFFRKALGGTQPKWDNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNELNWYLDELKP 87 (117)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcChhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccHHHHHhhH
Confidence 3467777777777665555543321 11245689999999999999999999999999999999999999999999999
Q ss_pred cccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039609 132 WSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVT 167 (248)
Q Consensus 132 W~l~k~~~~~~~~~~~~l~~~~~~l~~l~~lL~P~~ 167 (248)
|.+.+. .....+.++.++++.++++|+|||
T Consensus 88 w~~~~~------~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 88 ALQTEE------LREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred HHcCch------hHHHHHHHHHHHHHHHHHHHcCCC
Confidence 987541 123456678889999999999996
No 55
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.48 E-value=8.1e-14 Score=124.55 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=78.9
Q ss_pred CCCCcCCccChhHHHHh-cChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCC
Q 039609 1 MGKSLGNTLEPNELVHN-FGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDS 79 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~-yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~ 79 (248)
||||+||+|+|.++++. |+++++|||+++ ++++++++||++.+.++.+. .+++.|++.+. .. +
T Consensus 262 MSKSlGN~i~~~ell~~G~d~~~lR~~lls-~~yr~~l~fs~e~l~~a~~~--l~r~~~~~~~~--------~~--~--- 325 (384)
T PRK12418 262 MSKSRGNLVFVSRLRAAGVDPAAIRLALLA-GHYRADREWTDAVLAEAEAR--LARWRAAAALP--------AG--P--- 325 (384)
T ss_pred ccCcCCCcCCHHHHHhccCChhheeEEEec-cCCCCCcccCHHHHHHHHHH--HHHHHHHHhcc--------cc--c---
Confidence 99999999999998764 666699999995 99999999999999876432 23444444321 00 0
Q ss_pred cCchhcHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhHHhhhc
Q 039609 80 AVAAEGTAFKDTVEKLVETARGHYE-NLSLSSACEAVLDISNAGNSYMDEH 129 (248)
Q Consensus 80 ~~~~~d~~l~~~l~~~~~~~~~~~e-~~~~~~al~~i~~l~~~~n~yl~~~ 129 (248)
.+.++.+.+.++|+ +++++.|+..++++++.+|.|+...
T Consensus 326 -----------~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~~ 365 (384)
T PRK12418 326 -----------DAADVVARVRAALADDLDTPGALAAVDGWATDALEGGGDD 365 (384)
T ss_pred -----------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhccCCC
Confidence 12344678888996 8999999999999999999998754
No 56
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.46 E-value=6.6e-13 Score=122.04 Aligned_cols=118 Identities=19% Similarity=0.203 Sum_probs=82.1
Q ss_pred CCCCcCCccChhHHHHh-cChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCC
Q 039609 1 MGKSLGNTLEPNELVHN-FGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDS 79 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~-yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~ 79 (248)
||||+||+|++.|++++ |+++++|||+++ ++++++++||++.|.++.+. .+++.+++.++.. ...........
T Consensus 280 MSKSlGN~itl~dll~~g~~~~alR~~lls-~~yr~~l~Fs~e~l~~a~~~--~~rl~~~~~~~~~---~~~~~~~~~~~ 353 (490)
T PRK14536 280 MSKSAGQFLTLSSLQEKGFQPLDYRFFLLG-GHYRSQLAFSWEALKTAKAA--RRSLVRRVARVVD---AARATTGSVRG 353 (490)
T ss_pred ccccCCCcccHHHHHhcCCCHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHH---hhhcccccccc
Confidence 99999999999999998 999999999998 99999999999999987543 3444444444321 11111000000
Q ss_pred c---C-c-hhcHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhH
Q 039609 80 A---V-A-AEGTAFKDTVEKLVETARGHYE-NLSLSSACEAVLDISNAGNS 124 (248)
Q Consensus 80 ~---~-~-~~d~~l~~~l~~~~~~~~~~~e-~~~~~~al~~i~~l~~~~n~ 124 (248)
. . . .....+...+..+...+.++|+ +|+++.|+..|+++++.+|.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~l~~~~~~~n~ 404 (490)
T PRK14536 354 TLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSELQKLVKDTSV 404 (490)
T ss_pred cccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhh
Confidence 0 0 0 0001111234566788999996 89999999999999987774
No 57
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.2e-12 Score=117.37 Aligned_cols=122 Identities=20% Similarity=0.329 Sum_probs=99.6
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||++|+|++.|++++|.++.||+++|. ..|.+++|||...+..+. .+...+.||+.-+..+... ..+ ...
T Consensus 306 MSKSLkNFiTIke~Lk~~sp~qLRl~fl~-~~wr~~ldYs~s~m~~a~--q~e~~~~~ff~~~~al~~~----~~~-~~~ 377 (586)
T KOG2007|consen 306 MSKSLKNFITIKEALKKYSPRQLRLAFLL-HQWRSPLDYSDSTMEQAL--QLEKSLNNFFLDVKALLRG----AKP-FEK 377 (586)
T ss_pred hhhhhccceeHHHHHHhcCHHHHHHHHHH-HHhcCcCCchHHHHHHHH--HHHHHHHHHHHHHHHHHhc----cch-hhc
Confidence 99999999999999999999999999998 999999999999888764 3445566666544443322 111 223
Q ss_pred CchhcHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHhHHhhhcC
Q 039609 81 VAAEGTAFKDTVEKLVETARGHY-ENLSLSSACEAVLDISNAGNSYMDEHV 130 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~al~~i~~l~~~~n~yl~~~k 130 (248)
....+..+...+......+..++ ++|+++.+++.+.++++.+|.|+....
T Consensus 378 ~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs~~N~~i~~~~ 428 (586)
T KOG2007|consen 378 LSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQGNAYIRESG 428 (586)
T ss_pred cChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHHhhhhHHHHHhc
Confidence 45678889999999999998888 699999999999999999999998765
No 58
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.43 E-value=1.7e-12 Score=121.03 Aligned_cols=127 Identities=19% Similarity=0.271 Sum_probs=98.8
Q ss_pred CCCCcCCccChhHHHHh-cCh----------------hHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 039609 1 MGKSLGNTLEPNELVHN-FGS----------------DAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRT 63 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~-yg~----------------D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~ 63 (248)
||||+||+|+|.|++++ +|. |++||++++ ...++|.+|+++.+.+..+.... .+.....|+
T Consensus 323 MSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~-~~~~~~~~Fd~~~~~~~~~~~~~-yvqYa~aR~ 400 (507)
T PRK01611 323 MSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLS-RSRDKDLDFDLDLALSFEGNNPP-YVQYAHARI 400 (507)
T ss_pred ccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhh-cCCCCCCccCHHHHHhhcCCCcH-HHHHHHHHH
Confidence 99999999999999999 999 999999997 57899999999998765332222 344445677
Q ss_pred HHhhHhhcC-CcccC-CCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhc
Q 039609 64 LGLLKKNCQ-STLVV-DSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEH 129 (248)
Q Consensus 64 ~~~~~~~~~-~~~~~-~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~ 129 (248)
.+++.+... +..+. .....+.+.+|+..+..+...+.+++++++++.++..+++|++..|.|.+..
T Consensus 401 ~sil~k~~~~~~~~~~~~l~~~~e~~Ll~~L~~~~~~v~~a~~~~~p~~l~~yl~~la~~f~~fY~~~ 468 (507)
T PRK01611 401 CSILRKAAEAGIDLLLALLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYELAGAFHSFYNRV 468 (507)
T ss_pred HHHHHhhhccCccccccccCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 776655321 11111 1112467889999999999999999999999999999999998888777644
No 59
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.42 E-value=3.7e-13 Score=120.95 Aligned_cols=97 Identities=24% Similarity=0.253 Sum_probs=74.7
Q ss_pred CCCCcCCccChhHHHHh-cChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCC
Q 039609 1 MGKSLGNTLEPNELVHN-FGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDS 79 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~-yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~ 79 (248)
||||+||+|+|.++++. |++|++|||+++ ++|+++++||++.+.++.+ ..+++.+.+.+. . .+
T Consensus 289 MSKSlGN~i~~~dl~~~g~dp~~lRl~lls-~~Yr~pl~fs~e~l~~a~~--~l~rl~~~~~~~--------~--~~--- 352 (411)
T TIGR03447 289 MSKSLGNLVFVSKLRAAGVDPAAIRLGLLA-GHYRQDRDWTDAVLAEAEA--RLARWRAALAAT--------D--AP--- 352 (411)
T ss_pred ccCcCCCCCCHHHHHhcCCCcccEEEEEec-CCCCCCCccCHHHHHHHHH--HHHHHHHHHhhc--------c--cc---
Confidence 99999999999999887 999999999995 9999999999999987642 234444443321 0 00
Q ss_pred cCchhcHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhH
Q 039609 80 AVAAEGTAFKDTVEKLVETARGHYE-NLSLSSACEAVLDISNAGNS 124 (248)
Q Consensus 80 ~~~~~d~~l~~~l~~~~~~~~~~~e-~~~~~~al~~i~~l~~~~n~ 124 (248)
.+..+...+.++|+ +++++.|+..++++++.+|.
T Consensus 353 -----------~~~~~~~~~~~al~dDln~p~a~~~l~~~~~~~n~ 387 (411)
T TIGR03447 353 -----------DATDLIARLRQHLANDLDTPAALAAVDNWAAAALS 387 (411)
T ss_pred -----------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 12234566778886 89999999999999987654
No 60
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.39 E-value=4.3e-12 Score=116.23 Aligned_cols=117 Identities=16% Similarity=0.170 Sum_probs=81.6
Q ss_pred CCCCcCCccChhHHHHh-cChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCC
Q 039609 1 MGKSLGNTLEPNELVHN-FGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDS 79 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~-yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~ 79 (248)
||||+||+|++.|++++ |+++++|||+++ +++.++++||++.+.++.+. .+++.+.+.++...+.. .++......
T Consensus 280 MSKSlGN~i~l~dll~~~~~~~alR~~lls-~~yr~~l~Fs~e~l~~a~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~ 355 (481)
T PRK14534 280 MSKSNNNFITIKDLEDQGFSPLDFRYFCLT-AHYRTQLKFTFNNLKACKIA--RENMLNKLTYFYSSLDQ-FDLNLLNKD 355 (481)
T ss_pred ecccCCCcccHHHHHhcCCChhHHHHHHHh-CCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHhhhh-ccccccccc
Confidence 99999999999999997 999999999997 99999999999999987543 34444544444322211 010000000
Q ss_pred cCchhcHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhHH
Q 039609 80 AVAAEGTAFKDTVEKLVETARGHYE-NLSLSSACEAVLDISNAGNSY 125 (248)
Q Consensus 80 ~~~~~d~~l~~~l~~~~~~~~~~~e-~~~~~~al~~i~~l~~~~n~y 125 (248)
. +.........+...+.++|+ +++++.|+..|+++++.+|..
T Consensus 356 --~--~~~~~~~~~~~~~~f~~Al~DDlNtp~Al~~l~~~~k~~n~~ 398 (481)
T PRK14534 356 --L--ENIEFSLEKEYYDSFLEKIAFDLNIPQGLALLWDIIKDDNLS 398 (481)
T ss_pred --c--ccchhhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHh
Confidence 0 00000112345568889996 899999999999999988753
No 61
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.01 E-value=4.9e-09 Score=98.94 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=100.7
Q ss_pred CCCCcCCccChhHHHHh-------------------------cChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHH
Q 039609 1 MGKSLGNTLEPNELVHN-------------------------FGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANT 55 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~-------------------------yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~ 55 (248)
|||-+||+|+.+|++++ -|.|++||++++ ....++.+|+++.+.+.. .+-.-.
T Consensus 372 mStR~G~~v~l~dLldea~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~-~~~~~~~~Fd~d~~l~~~-g~t~pY 449 (562)
T PRK12451 372 MSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLK-NERMHNIEFSLENMLKFE-GETGPY 449 (562)
T ss_pred CcCCCCCeeEHHHHHHHHHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhh-cCCCCCceECHHHHhCcC-CCccHH
Confidence 99999999999999996 679999999998 788899999999975442 111225
Q ss_pred HHHHHHHHHHhhHhhcCCcccCC-CcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcC
Q 039609 56 IGNLLNRTLGLLKKNCQSTLVVD-SAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHV 130 (248)
Q Consensus 56 l~N~~~r~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~k 130 (248)
+.....|+++++.+......... ....+.+..+...+..+...+..++++++++.++..++++++.+|.|++..+
T Consensus 450 iQYa~AR~~SIlrka~~~~~~~~~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA~~fN~fy~~~~ 525 (562)
T PRK12451 450 VQYTHARACSILRKESVEFETCTFALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYYGNVR 525 (562)
T ss_pred HHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 66677888888776421100000 1124556778899999999999999999999999999999999999998754
No 62
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.4e-07 Score=88.80 Aligned_cols=128 Identities=20% Similarity=0.224 Sum_probs=103.2
Q ss_pred CCCCcCCccChhHHHHhcC----------------------hhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHH
Q 039609 1 MGKSLGNTLEPNELVHNFG----------------------SDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGN 58 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg----------------------~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N 58 (248)
|||-.|++|+.+|++++-+ .|++||++++ ....++++|+|+.+.+.-+ +-+-.+.-
T Consensus 384 mStR~G~~vtl~dllde~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~-~~~~~~~~Fd~d~~lsfeg-Nt~pYvQY 461 (577)
T COG0018 384 MSTRAGNVVTLDDLLDEAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLS-RSRDKDYVFDWDKALSFEG-NTAPYVQY 461 (577)
T ss_pred ccccCCceEEHHHHHHHHHHHhhhHhhhhhhhhHHHHHHhhhhhHHHHHHh-cCCCCCcEeeHHHHHhccC-CCchhHHH
Confidence 8999999999999999988 9999999998 7778999999999976533 44556677
Q ss_pred HHHHHHHhhHhhcCCcccCC-----CcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcC
Q 039609 59 LLNRTLGLLKKNCQSTLVVD-----SAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHV 130 (248)
Q Consensus 59 ~~~r~~~~~~~~~~~~~~~~-----~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~k 130 (248)
...|+.+.+.+......+.. ......+..|...+.++..-+..+.+.+.+|.....+++|+...|.|.+.++
T Consensus 462 A~ARi~SIlrka~e~~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY~~~~ 538 (577)
T COG0018 462 AHARICSILRKAGEDELDLSTEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLAGSFNSFYNACP 538 (577)
T ss_pred HHHHHHHHHHhccccccccccccchhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhCC
Confidence 78898888776432222221 1122335778889999999999999999999999999999999999988764
No 63
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.71 E-value=2.8e-08 Score=88.31 Aligned_cols=43 Identities=19% Similarity=0.370 Sum_probs=39.3
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHH
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDR 43 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~ 43 (248)
||||+||+|+|.|+++.+|+|++|||+++......|++|+.+.
T Consensus 276 MSKSkGnvI~~~dll~~~~~dalR~~~l~~~~~~~~i~Fd~~~ 318 (353)
T cd00674 276 MSSSKGNVITPSDWLEVAPPEVLRYLYARRKNPEKHIGFDLDI 318 (353)
T ss_pred cCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCCCcChhH
Confidence 9999999999999999999999999999855478899999853
No 64
>PLN02286 arginine-tRNA ligase
Probab=98.67 E-value=6.8e-07 Score=84.70 Aligned_cols=127 Identities=15% Similarity=0.162 Sum_probs=99.0
Q ss_pred CCCCcCCccChhHHHHh-----------------------------cChhHHHHHHhccCcccCCCCCCHHHHHHHHHHH
Q 039609 1 MGKSLGNTLEPNELVHN-----------------------------FGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAH 51 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~-----------------------------yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~ 51 (248)
|||-.||+|+.+|++++ .|.|++||++++ ....++++|+++.+.+.. .+
T Consensus 379 mStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~-~~~~~~~~Fd~d~~l~~~-g~ 456 (576)
T PLN02286 379 FRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLK-NNRLTNYTFSFDQMLDLK-GN 456 (576)
T ss_pred ccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhh-cCCCCCCccCHHHHHhhc-CC
Confidence 89999999999999994 478999999998 788899999999976432 22
Q ss_pred HHHHHHHHHHHHHHhhHhhcCCcc--c--CC-CcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHh
Q 039609 52 LANTIGNLLNRTLGLLKKNCQSTL--V--VD-SAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYM 126 (248)
Q Consensus 52 l~~~l~N~~~r~~~~~~~~~~~~~--~--~~-~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl 126 (248)
-.-.+.....|+.+++.+...... . .. ....+.+..|+..+..+...+..+.++++++..+..+++++...|.|.
T Consensus 457 t~pYlQYahAR~~SIlrKa~~~~~~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA~~F~~fY 536 (576)
T PLN02286 457 TAVYLLYAHARICSIIRKSGKDIDELKKTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFY 536 (576)
T ss_pred ChHHHHHHHHHHHHHHHhccCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 222567778898888876421110 0 00 111345677888999999999999999999999999999999999998
Q ss_pred hhc
Q 039609 127 DEH 129 (248)
Q Consensus 127 ~~~ 129 (248)
+..
T Consensus 537 ~~~ 539 (576)
T PLN02286 537 SNC 539 (576)
T ss_pred hcC
Confidence 755
No 65
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.60 E-value=9.3e-08 Score=88.96 Aligned_cols=46 Identities=15% Similarity=0.350 Sum_probs=42.4
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHH
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIV 48 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~ 48 (248)
||||+||+|++.|+++.+|+|++||++++ .++.++++|+.+.+ +.+
T Consensus 275 MSKS~Gn~itl~dll~~~~pdalR~~~l~-~~~~~~ldFd~~~l-~~~ 320 (515)
T TIGR00467 275 MSSSKGDVISVKDVLEVYTPEITRFLFAR-TKPEFHISFDLDVI-KLY 320 (515)
T ss_pred ccCCCCCCccHHHHHHHcCHHHHHHHHhc-cCCCCCCcCCHHHH-HHH
Confidence 99999999999999999999999999887 88899999999977 443
No 66
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.55 E-value=1.3e-07 Score=88.30 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=39.2
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCH
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSE 41 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~ 41 (248)
||||+||+|+|.|+++.||+|++|||++...++.+|++|+.
T Consensus 281 MSKSkGN~i~~~d~l~~~~pd~lR~~l~~~~~~~~~~~f~~ 321 (510)
T PRK00750 281 ISKSKGNVITIEDWLEYAPPESLRLFMFARPKPAKRLDFDV 321 (510)
T ss_pred ccccCCCccCHHHHHHHCCHHHHHHHHHhCCCCCCCCcccH
Confidence 99999999999999999999999999987788999999998
No 67
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=98.11 E-value=0.00011 Score=57.99 Aligned_cols=111 Identities=16% Similarity=0.193 Sum_probs=80.8
Q ss_pred hcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCccc---CC-C-cCchhcHHHHHH
Q 039609 17 NFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLV---VD-S-AVAAEGTAFKDT 91 (248)
Q Consensus 17 ~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~---~~-~-~~~~~d~~l~~~ 91 (248)
..|.|++||++++ ....++.+|+++.+.... ++-.-.+.....|+.+++.+....... .. . ...+.+..+...
T Consensus 2 ~i~~~a~~~~~l~-~~~~~~~~fd~~~~~~~~-~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll~~~~E~~L~~~ 79 (156)
T cd07956 2 EVGVGAVKYQDLS-NKRIKDYTFDWERMLSFE-GDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILL 79 (156)
T ss_pred ccchhHHHHHHHh-cCCCCCceecHHHHHhhc-CCCchhHHHHHHHHHHHHHhCCCcCccccccchhhcCCHHHHHHHHH
Confidence 4688999999998 777899999999865432 112234556678888887764321110 00 0 113356677788
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhc
Q 039609 92 VEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEH 129 (248)
Q Consensus 92 l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~ 129 (248)
+..+.+.+..++...+++.++..+.++....+.|++..
T Consensus 80 l~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~ffd~v 117 (156)
T cd07956 80 LAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNAC 117 (156)
T ss_pred HHHhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcC
Confidence 88888888888889999999999999999999999865
No 68
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=9e-05 Score=67.94 Aligned_cols=42 Identities=19% Similarity=0.318 Sum_probs=34.3
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHH
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDR 43 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~ 43 (248)
||||+||||++.|.++-+.+++|||++++ +.+.+-.+|+.+.
T Consensus 278 mSsSkG~~i~~~dwlev~~pE~lry~~~r-~kP~r~~~~d~~~ 319 (521)
T COG1384 278 MSSSKGNVISLSDWLEVAPPEVLRYLIAR-TKPNRHIDFDFDL 319 (521)
T ss_pred cccCCCcEEcHHHHHHhcCHhHeeeeeee-cCCCcceecCCCC
Confidence 99999999999999999999999999998 4444444444443
No 69
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.61 E-value=2.6e-05 Score=69.13 Aligned_cols=45 Identities=24% Similarity=0.430 Sum_probs=24.5
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHH-HHHH
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSED-RFIK 46 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~-~l~~ 46 (248)
||||+||+|+|.|.++-+.+++|||++++ +.+.+..+|+.+ .+.+
T Consensus 283 mSsSkG~~~t~~e~L~~~~PE~lr~l~~~-~~P~~~~~~~~~~~i~~ 328 (360)
T PF01921_consen 283 MSSSKGNGITPEEWLEYAPPESLRYLMAR-TKPNKAKDFSFDLVIPR 328 (360)
T ss_dssp ----------HHHHHTTS-HHHHHHHHHC-S-TTS-EEE--STTHHH
T ss_pred cccCCCCccCHHHHHHhcCHHHHHHHHcc-cCCCcceEeccCcchHH
Confidence 99999999999999999999999999997 566666666666 4443
No 70
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=94.97 E-value=0.74 Score=34.00 Aligned_cols=71 Identities=15% Similarity=0.243 Sum_probs=50.4
Q ss_pred HHHHHHhhHhhcCCcccCC---Cc--CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcC
Q 039609 60 LNRTLGLLKKNCQSTLVVD---SA--VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHV 130 (248)
Q Consensus 60 ~~r~~~~~~~~~~~~~~~~---~~--~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~k 130 (248)
..|+.+.+.+......... .. ..+.+..+...+..+...+..+++.++++..+..+.++....|.|++..+
T Consensus 5 ~aRi~sIl~k~~~~~~~~~~~~~~~~~~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La~~f~~fy~~~~ 80 (119)
T PF05746_consen 5 YARISSILRKAEESGINDEYDDDFLLEEEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELAQAFNSFYDNVR 80 (119)
T ss_dssp HHHHHHHHHHCTCTTCCCCHCCHHHS-SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHcCCCcCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4566666665433221111 11 23456678888888889999999999999999999999999999999764
No 71
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=93.89 E-value=0.29 Score=32.23 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=23.4
Q ss_pred HHHHHHh-hccHHHHHHHHHHHHHHHhH
Q 039609 98 TARGHYE-NLSLSSACEAVLDISNAGNS 124 (248)
Q Consensus 98 ~~~~~~e-~~~~~~al~~i~~l~~~~n~ 124 (248)
++.++|+ +||++.|+..|+++++.+|+
T Consensus 1 ~F~~AmdDDfNT~~Ala~lf~l~~~~N~ 28 (63)
T PF09190_consen 1 EFIEAMDDDFNTPEALAALFELVKEINR 28 (63)
T ss_dssp HHHHHHCBTS-HHHHHHHHHHHHHHHHH
T ss_pred ChHHHHhHhcCcHHHHHHHHHHHHHHHH
Confidence 3567886 99999999999999999998
No 72
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=92.06 E-value=3.4 Score=30.56 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=40.3
Q ss_pred hhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcC
Q 039609 83 AEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHV 130 (248)
Q Consensus 83 ~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~k 130 (248)
+.+..+...+..+.+.+..++.+.+++..+..+.++....|.|++..+
T Consensus 36 ~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~fy~~v~ 83 (122)
T smart00836 36 PEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFHSFYNKCR 83 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHccCc
Confidence 445667777777777788888899999999999999999999998753
No 73
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases.
Probab=91.47 E-value=0.22 Score=31.69 Aligned_cols=29 Identities=7% Similarity=0.151 Sum_probs=25.8
Q ss_pred HHHHHh-hccHHHHHHHHHHHHHHHhHHhh
Q 039609 99 ARGHYE-NLSLSSACEAVLDISNAGNSYMD 127 (248)
Q Consensus 99 ~~~~~e-~~~~~~al~~i~~l~~~~n~yl~ 127 (248)
+.++|+ +|+++.|+..++++++.+|.+++
T Consensus 2 f~~al~DD~NT~~Al~~l~~l~~~~N~~l~ 31 (56)
T smart00840 2 FEEAMDDDFNTPEALAVLFELAREINRLLL 31 (56)
T ss_pred hHHHhhcccCcHHHHHHHHHHHHHHHHHhh
Confidence 456775 99999999999999999999885
No 74
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.70 E-value=7 Score=36.53 Aligned_cols=127 Identities=15% Similarity=0.112 Sum_probs=77.6
Q ss_pred CCCCcCCccChhHHHH----------------------------hcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHH
Q 039609 1 MGKSLGNTLEPNELVH----------------------------NFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHL 52 (248)
Q Consensus 1 MSKS~GNvi~p~dli~----------------------------~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l 52 (248)
||.-+|+++-..|+++ ..|.-++..-.+. +.-.++-.|+|+.+-.. +.+-
T Consensus 368 msTRkG~~~fl~dil~e~re~m~e~M~s~~t~~~~~~~~~~vad~lg~sAviv~d~k-~rr~s~yeF~w~~~~~~-~gdt 445 (567)
T KOG1195|consen 368 MSTRKGKVVFLDDILEEAREQMLEVMASNKTKPVQMANPDEVADRLGLSAVIVQDFK-GRRISNYEFSWNRVLSF-EGDT 445 (567)
T ss_pred ccccCCceeeHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHhhHHHHHHHHH-HHhcccceEEhhhhhee-cCCc
Confidence 6777777777777665 3466666666665 44557778888876432 2222
Q ss_pred HHHHHHHHHHHHHhhHhhcCCcccCC-----CcC-chhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHh
Q 039609 53 ANTIGNLLNRTLGLLKKNCQSTLVVD-----SAV-AAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYM 126 (248)
Q Consensus 53 ~~~l~N~~~r~~~~~~~~~~~~~~~~-----~~~-~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl 126 (248)
.-.+.-...|..++..++.+-..+.. ... .+.-..++..+..+.+-+..+++.++.+..+..++.++..++...
T Consensus 446 g~yLQY~HsRL~Slerk~~~~~~~~l~~~d~~~l~ep~~~~Lv~~L~~fp~vve~s~e~lE~~~lV~YL~~La~a~s~~y 525 (567)
T KOG1195|consen 446 GPYLQYTHSRLRSLERKFSDVTLDDLDEIDFSLLTEPDALLLVRLLLQFPEVVEKSMEQLEPCTLVTYLFKLAHAVSSAY 525 (567)
T ss_pred hHHHHHHHHHHHHHHHhccccCchhhhccchhhcCChhHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHhHH
Confidence 22344445565554444322111110 001 112234666777778888888999999999999999998888776
Q ss_pred hhc
Q 039609 127 DEH 129 (248)
Q Consensus 127 ~~~ 129 (248)
...
T Consensus 526 k~l 528 (567)
T KOG1195|consen 526 KIL 528 (567)
T ss_pred hhe
Confidence 643
No 75
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=85.13 E-value=1.7 Score=33.96 Aligned_cols=35 Identities=11% Similarity=0.195 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhHHhh
Q 039609 93 EKLVETARGHYE-NLSLSSACEAVLDISNAGNSYMD 127 (248)
Q Consensus 93 ~~~~~~~~~~~e-~~~~~~al~~i~~l~~~~n~yl~ 127 (248)
..+...+.++|+ +||++.|+..|+++++.+|.+++
T Consensus 32 ~~~~~~f~~Al~DDlNt~~Ala~l~~l~k~~n~~~~ 67 (156)
T cd07963 32 EPFAERFIAAMDDDFNTPEALAVLFELAREINRLKK 67 (156)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 345578889996 99999999999999999998875
No 76
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=84.61 E-value=1.6 Score=41.67 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=39.6
Q ss_pred CCCCc-------C--------CccChhHHHHh-cChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHH
Q 039609 1 MGKSL-------G--------NTLEPNELVHN-FGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLAN 54 (248)
Q Consensus 1 MSKS~-------G--------Nvi~p~dli~~-yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~ 54 (248)
||||+ | +..+...+... |.++++|.|++..+.-..|..|+++.|... |.+.++
T Consensus 339 LSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~~~~~~~~~~L~~~-nr~~ld 407 (567)
T PRK04156 339 LSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISWENLYAI-NRKLID 407 (567)
T ss_pred eecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHH-HHHHHh
Confidence 89998 4 33566666666 999999999997444459999999999765 444433
No 77
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=82.32 E-value=17 Score=35.56 Aligned_cols=76 Identities=14% Similarity=0.130 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhhHhhcC---CcccCCCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhc
Q 039609 54 NTIGNLLNRTLGLLKKNCQ---STLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEH 129 (248)
Q Consensus 54 ~~l~N~~~r~~~~~~~~~~---~~~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~ 129 (248)
..+...+.|+.+.+.+... +.+....-..+.++.+...+..+...+...+..-++..++..+..|....+.||+..
T Consensus 569 ~~l~~~~kRv~NIl~k~~~~~~~~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~FFD~V 647 (682)
T PRK01233 569 KALAAANKRVSNILKKAEGKVSGEVDPALFEEPAEKALYAALEELKPKVEPALAAGDYQAALEALAALRPPVDAFFDNV 647 (682)
T ss_pred HHHHHHHHHHHHHHhccccccCCccChhHcCCHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhhhHHHHHhCCC
Confidence 3444556787777665321 112111112456777888888887788888887799999999999999999999974
No 78
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=81.53 E-value=19 Score=35.07 Aligned_cols=72 Identities=13% Similarity=0.115 Sum_probs=52.3
Q ss_pred HHHHHHHHhhHhhcC---CcccCCCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhc
Q 039609 58 NLLNRTLGLLKKNCQ---STLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEH 129 (248)
Q Consensus 58 N~~~r~~~~~~~~~~---~~~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~ 129 (248)
...+|+.+.+.+... +.+....-..+.++.+...+..+...+..++..-++..++..+..+..-...||+..
T Consensus 582 ~a~kRv~nIl~k~~~~~~~~v~~~Lf~~~~E~~L~~a~~~~~~~~~~a~a~~~y~~al~~L~~L~~pId~FFd~V 656 (691)
T COG0751 582 AANKRVSNILAKAEKKLSGTVDPSLFEEDAEKALFEALQALKPKVAEALAEKDYQDALAALAELRPPIDEFFDNV 656 (691)
T ss_pred HHHHHHHHHHHhcccccCCccChHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhHHHHhcCc
Confidence 456777776665432 222211112456778888888888899999988899999999999998899999974
No 79
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model.
Probab=76.28 E-value=32 Score=33.83 Aligned_cols=76 Identities=16% Similarity=0.220 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhhHhhcCC---cccCCCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhc
Q 039609 54 NTIGNLLNRTLGLLKKNCQS---TLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEH 129 (248)
Q Consensus 54 ~~l~N~~~r~~~~~~~~~~~---~~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~ 129 (248)
..+...+.|+.+.+.+..+. .+....-..+.++.+...+..+...+...+..-++..++..+..|....+.||+..
T Consensus 579 ~~l~~a~kRv~NIl~k~~~~~~~~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~FFD~V 657 (691)
T TIGR00211 579 EALAAANKRVANILKKGNPVLSSEIQANLFKEPKEKALFEAVLAIKMNAQESFESGDYETALEALAELRAPVDEFFDSV 657 (691)
T ss_pred HHHHHHHHHHHHHHhcccccccCccChhHcCCHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHhhhHHHHHhCCC
Confidence 34455568887776654321 11111112456777888887777777777776699999999999999999999975
No 80
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=74.02 E-value=8 Score=26.77 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=24.6
Q ss_pred HHHHHHHHHHh-hccHHHHHHHHHHHHHHH
Q 039609 94 KLVETARGHYE-NLSLSSACEAVLDISNAG 122 (248)
Q Consensus 94 ~~~~~~~~~~e-~~~~~~al~~i~~l~~~~ 122 (248)
.+..++.++|+ +|+++.|+..++++++.+
T Consensus 28 ~~~~~F~~AL~DDLNTp~Ala~L~~l~k~i 57 (81)
T cd07955 28 ALVARLREALADDLDTPKALAALDAWAREA 57 (81)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence 45578888996 999999999999999754
No 81
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=66.75 E-value=62 Score=33.22 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhhHhhcCCcccCCCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhc
Q 039609 54 NTIGNLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEH 129 (248)
Q Consensus 54 ~~l~N~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~ 129 (248)
..+...+.|+.+.+.+..+..+....-..+.++.|...+..+...+... .-++..++..+..|....+.||+..
T Consensus 894 ~~l~~a~kRv~NIl~k~~~~~vd~~Lf~~~~E~~L~~a~~~~~~~~~~~--~~dy~~al~~La~L~~~Id~FFD~V 967 (1000)
T PRK14908 894 AEIAAALNRLKRILASLSFSVTDASLLLEPAELNLKQALDAFREELTEL--PIDLKDYVAAAAELPQAVNTFFDEV 967 (1000)
T ss_pred HHHHHHHHHHHHHHhhcCCCccChhhcCCHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHhhhhHHHHHhCCC
Confidence 4455667888777665432212111112345666776666665555544 4588999999999999999999975
No 82
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=65.79 E-value=15 Score=31.63 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=18.7
Q ss_pred CCCCcCCccC-------hhHHHHh----cChhHHHHHHhc
Q 039609 1 MGKSLGNTLE-------PNELVHN----FGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~GNvi~-------p~dli~~----yg~D~lR~~ll~ 29 (248)
||||.||.|+ |.++-++ ++.++++|+-+-
T Consensus 199 MSKS~~~~i~l~~~~dsp~~i~~ki~~a~d~~v~~~~~~~ 238 (273)
T cd00395 199 FGKSESGPKWLDTEKTSPYEFYQFWINAVDSDVINILKYF 238 (273)
T ss_pred CCCCCCCCccccccCCCHHHHHHHHHcccHhHHHHHHHHH
Confidence 9999999985 4444333 456666665543
No 83
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=63.11 E-value=11 Score=33.36 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=15.8
Q ss_pred CCCCcCC-ccChhHHHHhcChhHHHHHHhc
Q 039609 1 MGKSLGN-TLEPNELVHNFGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~GN-vi~p~dli~~yg~D~lR~~ll~ 29 (248)
||||.+| .|...| ++|.++=-+.+
T Consensus 193 MSKS~~~s~I~L~D-----~~e~I~~KI~~ 217 (328)
T TIGR00233 193 MSKSDPNSAIFLTD-----TPKQIKKKIRK 217 (328)
T ss_pred CCCCCCCCeEeecC-----CHHHHHHHHHh
Confidence 9999997 887654 44554444443
No 84
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=60.60 E-value=14 Score=34.61 Aligned_cols=48 Identities=15% Similarity=0.242 Sum_probs=31.5
Q ss_pred CCCCcCCccChhHHHHh-cCh------------------------hHHHHHHhccCcccCCCCCCHHHHHHHHHHH
Q 039609 1 MGKSLGNTLEPNELVHN-FGS------------------------DAVRYFFLKEVEFGNDGDYSEDRFIKIVNAH 51 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~-yg~------------------------D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~ 51 (248)
|||..| .+++.+++++ |-+ +++|+|.+. ....++..|+++.+ ...|.+
T Consensus 242 LSKR~g-~~~l~~l~~~g~~p~a~~~~~~~lG~~~~~~~e~~~~~~~i~~f~l~-~~~~~~~~fd~~kL-~~~N~~ 314 (470)
T TIGR00464 242 LSKRDG-ATSIMQFKEQGYLPEALINYLALLGWSPPDDQEFFSLEELIEIFSLN-RVSKSPAKFDWKKL-QWLNAH 314 (470)
T ss_pred ccccCC-CccHHHHHHCCCCHHHHHHHHHHcCCCCCCccccCCHHHHHHhcCcc-cCCCCCCeecHHHH-HHHHHH
Confidence 899998 8899988887 233 455655554 33346777888774 344543
No 85
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=49.30 E-value=18 Score=31.13 Aligned_cols=26 Identities=23% Similarity=0.088 Sum_probs=16.3
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~ 29 (248)
||||.+|.+| ..+ .-+++.++=++..
T Consensus 196 MSKS~~~~~~-i~l--~dsp~~i~~Ki~~ 221 (269)
T cd00805 196 MSKSEGNAIW-DPV--LDSPYDVYQKIRN 221 (269)
T ss_pred ccCCCCCccc-ccC--CCCHHHHHHHHHc
Confidence 9999999995 222 2345555555553
No 86
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=46.87 E-value=40 Score=31.98 Aligned_cols=49 Identities=10% Similarity=0.098 Sum_probs=38.4
Q ss_pred CCCCc------CCccC---------hhHHHHh-cChhHHHHHHhccCcccCCCCCCHHHHHHHHH
Q 039609 1 MGKSL------GNTLE---------PNELVHN-FGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVN 49 (248)
Q Consensus 1 MSKS~------GNvi~---------p~dli~~-yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n 49 (248)
|||++ .+.|+ +..+-.+ |-++++|=|++..+.-..|..++++.|.....
T Consensus 247 LSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nR 311 (523)
T PLN03233 247 LSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWAENK 311 (523)
T ss_pred ccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecHHHHHHHHH
Confidence 79997 44553 5555554 88999999999988888999999999977543
No 87
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=46.47 E-value=12 Score=33.57 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.5
Q ss_pred CCCCcCCccChhHHHHhcChhHHH
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVR 24 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR 24 (248)
||+.+||+|...|++++-...+.+
T Consensus 289 mstR~G~~i~l~dllde~~~~a~~ 312 (354)
T PF00750_consen 289 MSTRKGNVITLDDLLDEAVERALE 312 (354)
T ss_dssp S-TTTTSSTBHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEHHHHHHHHHHHHHH
Confidence 999999999999999998888888
No 88
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=42.95 E-value=49 Score=28.01 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=22.6
Q ss_pred CCCCcCCccChhHHHHh-cChhHHHHHHhc
Q 039609 1 MGKSLGNTLEPNELVHN-FGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~-yg~D~lR~~ll~ 29 (248)
|||+.|+ .++..+.+. +.+++++-|++.
T Consensus 163 LSKR~~~-~~l~~lr~~G~~p~ai~~~l~~ 191 (239)
T cd00808 163 LSKRKGD-TSISDYREEGYLPEALLNYLAL 191 (239)
T ss_pred ccCCCCC-ccHHHHHHCCCCHHHHHHHHHH
Confidence 8999999 566666553 789999999986
No 89
>PLN02486 aminoacyl-tRNA ligase
Probab=42.79 E-value=2e+02 Score=26.22 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=17.4
Q ss_pred CCCCcCC-ccChhHHHHhcChhHHHHHHhc
Q 039609 1 MGKSLGN-TLEPNELVHNFGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~GN-vi~p~dli~~yg~D~lR~~ll~ 29 (248)
||||.+| .|...| +++.++=.+..
T Consensus 266 MSkS~~nsaI~L~D-----~p~~i~~KI~k 290 (383)
T PLN02486 266 MSASDPNSAIYVTD-----TPKEIKNKINK 290 (383)
T ss_pred CcCcCCCCeeeccC-----CHHHHHHHHhc
Confidence 9999988 698876 56666555544
No 90
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=41.92 E-value=13 Score=34.11 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=20.5
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~ 29 (248)
||||.||.|+..| +..+++.++=++++
T Consensus 233 MsKS~~naI~L~d--~~tsp~~i~qki~~ 259 (408)
T PRK05912 233 MGKSEGNAVWLDE--EKTSPYEMYQKWMN 259 (408)
T ss_pred ccCCCCCceeCCC--CCCCHHHHHHHHhc
Confidence 9999999999876 23456677767765
No 91
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=41.38 E-value=9.7 Score=34.91 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=19.0
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~ 29 (248)
||||.||.|+..|= ..+++.++=++++
T Consensus 231 MsKS~~naI~L~d~--~tsp~~i~qki~~ 257 (410)
T PRK13354 231 MGKSAGGAIWLDPE--KTSPYEFYQFWMN 257 (410)
T ss_pred cCCCCCCceeccCC--CCCHHHHHHHHHc
Confidence 99999999998752 2445555555554
No 92
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=40.85 E-value=18 Score=32.18 Aligned_cols=11 Identities=45% Similarity=0.622 Sum_probs=9.6
Q ss_pred CCCCcCCccCh
Q 039609 1 MGKSLGNTLEP 11 (248)
Q Consensus 1 MSKS~GNvi~p 11 (248)
||||.+|.|..
T Consensus 203 MSKS~~n~I~L 213 (332)
T PRK12556 203 MSKSYGNVIPL 213 (332)
T ss_pred CCCCCCCcccc
Confidence 99999999854
No 93
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=40.73 E-value=17 Score=33.54 Aligned_cols=12 Identities=42% Similarity=0.374 Sum_probs=10.4
Q ss_pred CCCCcCCccChh
Q 039609 1 MGKSLGNTLEPN 12 (248)
Q Consensus 1 MSKS~GNvi~p~ 12 (248)
||||.+|.|...
T Consensus 203 MSKS~~n~I~L~ 214 (431)
T PRK12284 203 MSKSYDNTIPLF 214 (431)
T ss_pred ccCCCCCEeeec
Confidence 999999999654
No 94
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=39.49 E-value=86 Score=28.54 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=16.3
Q ss_pred CCCCcCC-ccChhHHHHhcChhHHHHHHhc
Q 039609 1 MGKSLGN-TLEPNELVHNFGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~GN-vi~p~dli~~yg~D~lR~~ll~ 29 (248)
||||.+| .|...| .++.+|=-+++
T Consensus 258 MSKS~~ns~I~L~D-----spe~I~kKI~k 282 (383)
T PTZ00126 258 MSKSDPNSAIFMED-----SEEDVNRKIKK 282 (383)
T ss_pred CCcCCCCCeecCCC-----CHHHHHHHHHh
Confidence 9999987 587765 45555555543
No 95
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=39.06 E-value=11 Score=33.23 Aligned_cols=11 Identities=36% Similarity=0.169 Sum_probs=9.4
Q ss_pred CCCCcCC-ccCh
Q 039609 1 MGKSLGN-TLEP 11 (248)
Q Consensus 1 MSKS~GN-vi~p 11 (248)
||||.+| +|..
T Consensus 199 MSkS~~ns~I~L 210 (314)
T COG0180 199 MSKSDPNSAIFL 210 (314)
T ss_pred ccccCCCCeeec
Confidence 9999999 7754
No 96
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=38.26 E-value=12 Score=32.43 Aligned_cols=13 Identities=31% Similarity=0.268 Sum_probs=10.2
Q ss_pred CCCCcCC-ccChhH
Q 039609 1 MGKSLGN-TLEPNE 13 (248)
Q Consensus 1 MSKS~GN-vi~p~d 13 (248)
||||.+| .|+..|
T Consensus 199 MSKS~~ns~I~L~d 212 (292)
T PF00579_consen 199 MSKSDPNSAIFLDD 212 (292)
T ss_dssp TTTTTTGGS-BTTT
T ss_pred cCccCCccEEEEec
Confidence 9999999 777654
No 97
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=38.03 E-value=62 Score=30.96 Aligned_cols=48 Identities=13% Similarity=0.092 Sum_probs=37.6
Q ss_pred CCCCcCC------cc---------ChhHHHHh-cChhHHHHHHhccCcccCCCCCCHHHHHHHH
Q 039609 1 MGKSLGN------TL---------EPNELVHN-FGSDAVRYFFLKEVEFGNDGDYSEDRFIKIV 48 (248)
Q Consensus 1 MSKS~GN------vi---------~p~dli~~-yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~ 48 (248)
|||+++. .| ++..+..+ |-++++|=|++..+.-..|..++++.|....
T Consensus 271 LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~~i~~~~L~~~n 334 (554)
T PRK05347 271 MSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDMSMLESCI 334 (554)
T ss_pred cccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCeecHHHHHHHH
Confidence 7999854 22 46666665 8999999999987777789999999987653
No 98
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=36.29 E-value=17 Score=33.11 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=17.0
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~ 29 (248)
||||.+|.|...| ++|.+|=-+++
T Consensus 265 MSKS~~n~I~L~D-----s~~~I~kKI~~ 288 (398)
T PRK12283 265 MSKSYGNTIGLRE-----DPESVTKKIRT 288 (398)
T ss_pred CCCCCCCeeeCcC-----CHHHHHHHHHh
Confidence 9999999998755 45555555544
No 99
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.23 E-value=3.7e+02 Score=25.20 Aligned_cols=118 Identities=16% Similarity=0.222 Sum_probs=71.6
Q ss_pred cCCccChhHHHHh-----cChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcC-------
Q 039609 5 LGNTLEPNELVHN-----FGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQ------- 72 (248)
Q Consensus 5 ~GNvi~p~dli~~-----yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~------- 72 (248)
+-.+.+|+++-+. || .+.|.=++ .+--+|--||.+.+.+-. .+-+-.+-....|+.+.+.+...
T Consensus 478 rdk~~tpeeL~~a~eavayG--ciKYaDL~-hnR~~dY~FSFDkML~Dr-GnTAvYLLYa~tRIcSI~rksg~d~~~l~~ 553 (656)
T KOG4426|consen 478 RDKVLTPEELDAAQEAVAYG--CIKYADLS-HNRITDYIFSFDKMLEDR-GNTAVYLLYAYTRICSIARKSGKDNVDLIK 553 (656)
T ss_pred ccccCCHHHHHHHHHHHHhc--chhHhhhc-cccccceeeeHHHHhhcc-CcceehhHHHHHHHHHHHHHcCCchhhHHH
Confidence 4456667666543 44 37777676 555588999999886431 11122233345677766543211
Q ss_pred -----CcccCCCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhc
Q 039609 73 -----STLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEH 129 (248)
Q Consensus 73 -----~~~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~ 129 (248)
+.++. ..+.+..+-..+..+.+.+..+.++.=+|..+..++++......|.+..
T Consensus 554 ~lkkT~ki~L---DH~~E~kLg~~lLkf~e~v~~~~~~L~lh~lC~y~y~l~t~Ft~FY~~C 612 (656)
T KOG4426|consen 554 ELKKTGKIAL---DHEKEWKLGKHLLKFAEIVEKALDSLFLHVLCDYLYELATLFTEFYDSC 612 (656)
T ss_pred HHHhcCcccc---CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 11111 1233444556677777888888888889999999999987666665543
No 100
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=35.63 E-value=48 Score=31.76 Aligned_cols=49 Identities=10% Similarity=-0.021 Sum_probs=37.8
Q ss_pred CCCCcCCc---------------cChhHHHHh-cChhHHHHHHhccCcccCCCCCCHHHHHHHHH
Q 039609 1 MGKSLGNT---------------LEPNELVHN-FGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVN 49 (248)
Q Consensus 1 MSKS~GNv---------------i~p~dli~~-yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n 49 (248)
|||++... .+...+..+ |-++++|=|++..+--..|..++++.|.....
T Consensus 287 LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~~~~G~sk~~~~i~~~~Le~~nR 351 (574)
T PTZ00437 287 LSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITRSMNVIQISMLENTLR 351 (574)
T ss_pred eeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCccceEeeHHHHHHHHH
Confidence 68888774 244455544 88999999999877777899999999987643
No 101
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=34.52 E-value=13 Score=32.19 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=16.1
Q ss_pred CCCCcC-CccChhHHHHhcChhHHHHHHh
Q 039609 1 MGKSLG-NTLEPNELVHNFGSDAVRYFFL 28 (248)
Q Consensus 1 MSKS~G-Nvi~p~dli~~yg~D~lR~~ll 28 (248)
||||.| |.|+..| +++.+|=-+.
T Consensus 192 MSKS~~~~~I~L~d-----~~~~i~~KI~ 215 (280)
T cd00806 192 MSKSDPNNAIFLTD-----SPKEIKKKIM 215 (280)
T ss_pred ccCCCCCCeEEeeC-----CHHHHHHHHH
Confidence 999998 9998765 4455554444
No 102
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=31.31 E-value=88 Score=31.26 Aligned_cols=38 Identities=8% Similarity=-0.083 Sum_probs=30.2
Q ss_pred hhHHHHh-cChhHHHHHHhccCcccCCCCCCHHHHHHHH
Q 039609 11 PNELVHN-FGSDAVRYFFLKEVEFGNDGDYSEDRFIKIV 48 (248)
Q Consensus 11 p~dli~~-yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~ 48 (248)
+..+..+ |-++++|=|++..+.-..|..++++.|....
T Consensus 299 i~~lrrrG~~peAi~~f~~~lG~s~~~~~i~~~~L~~~~ 337 (771)
T PRK14703 299 IAGQRRRGVTPEAIRDFADQIGVAKTNSTVDIGVLEFAI 337 (771)
T ss_pred HHHHHHCCCCHHHHHHHHHHhCCCccCceecHHHHHHHH
Confidence 4444443 8899999999987777789999999987754
No 103
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=29.97 E-value=20 Score=31.74 Aligned_cols=13 Identities=31% Similarity=0.440 Sum_probs=11.5
Q ss_pred CCCCc-CCccChhH
Q 039609 1 MGKSL-GNTLEPNE 13 (248)
Q Consensus 1 MSKS~-GNvi~p~d 13 (248)
||||. ||.|+..|
T Consensus 215 MSKS~p~~~I~L~D 228 (329)
T PRK08560 215 MSKSKPGSAIFVHD 228 (329)
T ss_pred CcCCCCCCeecccC
Confidence 99999 99998765
No 104
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=29.31 E-value=83 Score=29.92 Aligned_cols=48 Identities=13% Similarity=0.080 Sum_probs=34.3
Q ss_pred CCCCcCCc---------------cChhHHHHh-cChhHHHHHHhccCcccCCCCCCHHHHHHHH
Q 039609 1 MGKSLGNT---------------LEPNELVHN-FGSDAVRYFFLKEVEFGNDGDYSEDRFIKIV 48 (248)
Q Consensus 1 MSKS~GNv---------------i~p~dli~~-yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~ 48 (248)
|||+++.. .++..+..+ |-++++|=|++..+.-..|...++..+.+.+
T Consensus 242 LSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~~~~ 305 (522)
T TIGR00440 242 LSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLESCI 305 (522)
T ss_pred cccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHHHHH
Confidence 79998765 366676665 8999999999985554455556666666543
No 105
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=29.21 E-value=1.1e+02 Score=28.81 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=19.7
Q ss_pred CCCCcCCccChhHHHHh-cChhHHHHHHh
Q 039609 1 MGKSLGNTLEPNELVHN-FGSDAVRYFFL 28 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~-yg~D~lR~~ll 28 (248)
|||..| .+++.++.+. |-+.+++-|++
T Consensus 252 lSKR~g-~~~l~~l~~~G~~p~Ai~n~l~ 279 (476)
T PRK01406 252 LSKRHG-ATSVEQYRDMGYLPEALLNYLA 279 (476)
T ss_pred ccCcCC-ccCHHHHHHCCCCHHHHHHHHH
Confidence 899999 8899998886 45555555554
No 106
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit. This model describes both iron- and cobalt-containing nitrile hydratase alpha chains. It excludes the thiocyanate hydrolase gamma subunit of Thiobacillus thioparus, a sequence that appears to have evolved from within the family of nitrile hydratase alpha subunits but which differs by several indels and a more rapid accumulation of point mutations.
Probab=29.00 E-value=23 Score=28.37 Aligned_cols=41 Identities=24% Similarity=0.553 Sum_probs=31.3
Q ss_pred ccChhHHHHhcChhH--------------HHHHHhccCcccCCCCCCHHHHHHHHH
Q 039609 8 TLEPNELVHNFGSDA--------------VRYFFLKEVEFGNDGDYSEDRFIKIVN 49 (248)
Q Consensus 8 vi~p~dli~~yg~D~--------------lR~~ll~~~~~~~d~~fs~~~l~~~~n 49 (248)
+.+|+.++.+||.+. +||+++=..|.+. -.+|++.+...+.
T Consensus 118 VrePR~VL~EFGv~lP~~veVrV~Dstae~rYlVLP~RP~gt-e~lsEeqLa~lVt 172 (185)
T TIGR01323 118 VRDPRGVLREFGTELPSDVEIRVWDSSAESRYLVLPQRPAGT-EHMSEEQLQQLVT 172 (185)
T ss_pred HHCHHHHHHHhCCCCCCCeEEEEEeCCCCeEEEEEecCCCCC-CCCCHHHHHHhhc
Confidence 568999999998654 8999998777664 4599998876543
No 107
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=28.60 E-value=20 Score=31.97 Aligned_cols=13 Identities=46% Similarity=0.680 Sum_probs=11.3
Q ss_pred CCCCcCCccChhH
Q 039609 1 MGKSLGNTLEPNE 13 (248)
Q Consensus 1 MSKS~GNvi~p~d 13 (248)
||||.+|.|...|
T Consensus 197 MSKS~~~~I~L~D 209 (333)
T PRK12282 197 MSKSLGNAIYLSD 209 (333)
T ss_pred CCCCCCCeeeeeC
Confidence 9999999998755
No 108
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=27.47 E-value=34 Score=20.82 Aligned_cols=10 Identities=60% Similarity=0.534 Sum_probs=5.7
Q ss_pred HHHHHhhHHH
Q 039609 232 VAKKKEKKAK 241 (248)
Q Consensus 232 ~~~~~~~~~~ 241 (248)
.||||++|+-
T Consensus 33 rgKkk~KKei 42 (49)
T PF11044_consen 33 RGKKKEKKEI 42 (49)
T ss_pred HhhhhhHHHH
Confidence 4666666553
No 109
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=27.45 E-value=62 Score=27.22 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=23.0
Q ss_pred CCCCcCCccChhHHHHh-cChhHHHHHHhcc
Q 039609 1 MGKSLGNTLEPNELVHN-FGSDAVRYFFLKE 30 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~-yg~D~lR~~ll~~ 30 (248)
||||.|+ +++.++.++ |.+++++-|++..
T Consensus 154 LSKr~~~-~~i~~~r~~G~~p~ai~~~l~~l 183 (230)
T cd00418 154 LSKRKLN-TTLRALRRRGYLPEALRNYLALI 183 (230)
T ss_pred ccCcCCC-cCHHHHHHCCCcHHHHHHHHHHc
Confidence 8999998 567776554 8899999998863
No 110
>PF12960 DUF3849: Protein of unknown function (DUF3849); InterPro: IPR024383 This domain is found in a family of uncharacterised proteins found by clustering human gut metagenomic sequences [].
Probab=25.71 E-value=61 Score=24.83 Aligned_cols=37 Identities=32% Similarity=0.670 Sum_probs=28.7
Q ss_pred CCccC---hhHHHHhcChhHHHHHHhccCc-ccCCCCCCHH
Q 039609 6 GNTLE---PNELVHNFGSDAVRYFFLKEVE-FGNDGDYSED 42 (248)
Q Consensus 6 GNvi~---p~dli~~yg~D~lR~~ll~~~~-~~~d~~fs~~ 42 (248)
||-.+ +.++|++||.|-+-|-|+.... -.-|+.||.+
T Consensus 43 ~~~L~~~a~~~vie~fG~eR~~~VLAnTIq~kd~DGRfS~~ 83 (133)
T PF12960_consen 43 GNRLDPDAVKEVIEKFGYERVAYVLANTIQQKDWDGRFSQD 83 (133)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHH
Confidence 55555 4789999999999999986433 3578999987
No 111
>PLN02859 glutamine-tRNA ligase
Probab=24.60 E-value=81 Score=31.53 Aligned_cols=49 Identities=20% Similarity=0.045 Sum_probs=35.1
Q ss_pred CCCCcCCc---------------cChhHHHHh-cChhHHHHHHhccCcccCCC-CCCHHHHHHHHHH
Q 039609 1 MGKSLGNT---------------LEPNELVHN-FGSDAVRYFFLKEVEFGNDG-DYSEDRFIKIVNA 50 (248)
Q Consensus 1 MSKS~GNv---------------i~p~dli~~-yg~D~lR~~ll~~~~~~~d~-~fs~~~l~~~~n~ 50 (248)
|||+++.. .++..+..+ |-++++|=|++..+.-..|. .|+++.| ...+.
T Consensus 500 LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~~~e~i~~~~L-e~~~r 565 (788)
T PLN02859 500 MSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRSDNSLIRMDRL-EHHIR 565 (788)
T ss_pred ccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCceecHHHH-HhhCH
Confidence 79998764 244455554 88999999999866555666 7999998 43343
No 112
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=24.16 E-value=2.4e+02 Score=27.85 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHH
Q 039609 86 TAFKDTVEKLVETARGHYE-NLSLSSACEAVLDI 118 (248)
Q Consensus 86 ~~l~~~l~~~~~~~~~~~e-~~~~~~al~~i~~l 118 (248)
..+.+.+.+.++-+++.|+ +-+.+..+..+-++
T Consensus 320 ~~lae~l~~~L~PIRe~~~~~~e~~~~~~~~~~~ 353 (682)
T PTZ00348 320 SCLIDEVNALLEPVRQHFASNPEAHELLEAVKSY 353 (682)
T ss_pred HHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Confidence 4455666677777777775 33444455544444
No 113
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=20.82 E-value=32 Score=30.59 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=16.6
Q ss_pred CCCCcC---CccChhHHHHhcChhHHHHHHhc
Q 039609 1 MGKSLG---NTLEPNELVHNFGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~G---Nvi~p~dli~~yg~D~lR~~ll~ 29 (248)
||||.+ |.|...| ++|.++=-+++
T Consensus 194 MSKS~~~~~~~I~l~D-----~~~~I~~KI~~ 220 (333)
T PRK00927 194 MSKSDPNDNNTINLLD-----DPKTIAKKIKK 220 (333)
T ss_pred CCCCCCCCCCeEEeeC-----CHHHHHHHHHh
Confidence 999999 8998765 45555544443
Done!