Query 039609
Match_columns 248
No_of_seqs 272 out of 2206
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 19:39:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039609.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039609hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u1f_A Methionyl-tRNA syntheta 100.0 9.5E-45 3.2E-49 338.7 20.2 215 1-221 324-541 (542)
2 3kfl_A Methionyl-tRNA syntheta 100.0 9.2E-44 3.2E-48 332.9 21.1 218 1-224 340-560 (564)
3 1rqg_A Methionyl-tRNA syntheta 100.0 1.8E-42 6.3E-47 331.7 19.5 213 1-223 345-557 (722)
4 4dlp_A Aminoacyl-tRNA syntheta 100.0 2.9E-42 9.9E-47 321.4 17.4 214 1-220 322-535 (536)
5 2x1l_A Methionyl-tRNA syntheta 100.0 7.1E-40 2.4E-44 304.6 17.3 212 1-216 311-523 (524)
6 3h99_A Methionyl-tRNA syntheta 100.0 4.7E-40 1.6E-44 307.9 15.9 209 1-222 346-555 (560)
7 2csx_A Methionyl-tRNA syntheta 100.0 9.2E-39 3.2E-43 295.4 18.1 202 1-216 296-497 (497)
8 2d5b_A Methionyl-tRNA syntheta 100.0 6E-38 2E-42 290.1 14.9 202 1-214 298-500 (500)
9 1gax_A Valrs, valyl-tRNA synth 100.0 3.4E-30 1.2E-34 250.1 16.8 166 1-180 529-696 (862)
10 1ile_A Ilers, isoleucyl-tRNA s 100.0 2.3E-29 7.9E-34 244.5 16.1 173 1-181 592-772 (821)
11 1ffy_A Isoleucyl-tRNA syntheta 100.0 9.8E-29 3.3E-33 241.6 16.0 174 1-180 596-773 (917)
12 1wkb_A Leucyl-tRNA synthetase; 100.0 7.8E-28 2.7E-32 233.7 16.7 159 1-179 651-810 (810)
13 1wz2_A Leucyl-tRNA synthetase; 100.0 1.6E-27 5.5E-32 234.7 17.7 162 1-182 651-813 (967)
14 4arc_A Leucine--tRNA ligase; l 99.9 3.3E-27 1.1E-31 228.9 18.6 160 1-182 640-800 (880)
15 2v0c_A Aminoacyl-tRNA syntheta 99.9 7.8E-27 2.7E-31 227.3 18.8 158 1-179 638-795 (878)
16 1iq0_A Arginyl-tRNA synthetase 99.7 9.3E-17 3.2E-21 150.8 12.3 134 1-136 395-558 (592)
17 3c8z_A Cysteinyl-tRNA syntheta 99.7 5.3E-17 1.8E-21 146.5 8.8 97 1-124 292-390 (414)
18 3fnr_A Arginyl-tRNA synthetase 99.7 1.5E-16 5.1E-21 144.9 11.5 129 1-130 286-418 (464)
19 1li5_A Cysrs, cysteinyl-tRNA s 99.7 8.2E-17 2.8E-21 146.9 9.2 105 1-128 267-372 (461)
20 3sp1_A Cysteinyl-tRNA syntheta 99.6 6E-16 2E-20 141.3 9.2 111 1-123 300-416 (501)
21 3tqo_A Cysteinyl-tRNA syntheta 99.6 6.6E-15 2.3E-19 133.6 11.0 104 1-128 270-374 (462)
22 2zue_A Arginyl-tRNA synthetase 99.6 2.3E-14 7.8E-19 135.3 12.8 127 1-129 425-590 (629)
23 1f7u_A Arginyl-tRNA synthetase 99.1 3.4E-10 1.2E-14 106.3 12.8 127 1-130 408-569 (607)
24 1irx_A Lysyl-tRNA synthetase; 98.6 1.3E-08 4.3E-13 94.3 3.8 47 1-48 280-327 (523)
25 3aii_A Glutamyl-tRNA synthetas 96.2 0.0028 9.6E-08 58.4 3.8 49 1-49 330-394 (553)
26 1qtq_A GLNRS, protein (glutami 93.4 0.051 1.7E-06 50.1 3.7 46 1-47 268-330 (553)
27 2hz7_A Glutaminyl-tRNA synthet 89.3 0.19 6.6E-06 48.5 3.0 46 1-47 308-370 (851)
28 2cfo_A Glutamyl-tRNA synthetas 88.7 0.51 1.7E-05 43.0 5.3 43 1-45 248-295 (492)
29 2cyb_A Tyrosyl-tRNA synthetase 83.5 0.68 2.3E-05 39.7 3.1 25 1-30 215-239 (323)
30 1j09_A Glutamyl-tRNA synthetas 75.5 3 0.0001 37.6 4.8 44 1-46 244-291 (468)
31 2ja2_A Glutamyl-tRNA synthetas 72.2 4.8 0.00016 36.6 5.3 29 1-30 258-287 (498)
32 3afh_A Glutamyl-tRNA synthetas 64.9 6.3 0.00022 35.7 4.4 42 1-44 256-300 (488)
33 1y42_X Tyrosyl-tRNA synthetase 64.8 2.2 7.6E-05 37.5 1.4 27 1-29 294-320 (392)
34 2ts1_A Tyrosyl-tRNA synthetase 63.8 1.9 6.6E-05 38.3 0.8 27 1-29 231-257 (419)
35 2o5r_A Glutamyl-tRNA synthetas 63.5 9.2 0.00032 34.5 5.3 28 1-29 263-291 (481)
36 1h3f_A Tyrosyl-tRNA synthetase 63.0 2.7 9.1E-05 37.6 1.6 24 1-29 233-256 (432)
37 1jil_A Tyrrs, tyrosyl-tRNA syn 62.9 2.1 7.1E-05 38.1 0.8 27 1-29 232-258 (420)
38 2yxn_A Tyrosyl-tRNA synthetase 61.9 2 6.8E-05 36.8 0.5 27 1-29 236-262 (322)
39 2jan_A Tyrosyl-tRNA synthetase 61.1 2.3 8E-05 37.9 0.8 27 1-29 232-259 (432)
40 2g36_A Tryptophanyl-tRNA synth 60.8 3 0.0001 35.9 1.5 24 1-29 206-229 (340)
41 2pid_A Tyrosyl-tRNA synthetase 57.9 2.1 7.2E-05 37.2 -0.0 27 1-29 255-281 (356)
42 3al0_C Glutamyl-tRNA(Gln) amid 53.5 8.2 0.00028 35.9 3.2 29 1-30 360-389 (592)
43 3tzl_A Tryptophanyl-tRNA synth 50.5 5.2 0.00018 34.2 1.2 24 1-29 193-216 (322)
44 2el7_A Tryptophanyl-tRNA synth 49.7 3.7 0.00013 35.3 0.2 24 1-29 196-219 (337)
45 1yi8_B Tryptophanyl-tRNA synth 45.6 5.1 0.00017 34.7 0.4 24 1-29 216-239 (351)
46 2zp1_A Tyrosyl-tRNA synthetase 44.3 5.5 0.00019 33.8 0.4 13 1-13 205-217 (314)
47 1r6u_A Tryptophanyl-tRNA synth 38.2 7.9 0.00027 34.5 0.5 13 1-13 303-316 (437)
48 2yy5_A Tryptophanyl-tRNA synth 36.5 8.9 0.0003 33.1 0.5 13 1-13 203-218 (348)
49 3jxe_A Tryptophanyl-tRNA synth 34.2 8.9 0.0003 33.7 0.1 12 1-12 254-266 (392)
50 1r6t_A Tryptophanyl-tRNA synth 33.6 10 0.00035 34.2 0.4 13 1-13 350-363 (477)
51 3i05_A Tryptophanyl-tRNA synth 33.2 7.9 0.00027 34.0 -0.4 13 1-13 271-283 (395)
52 1i6k_A TRPRS, tryptophanyl-tRN 32.3 11 0.00039 32.1 0.5 13 1-13 193-208 (328)
53 2ip1_A Tryptophanyl-tRNA synth 31.7 8.8 0.0003 34.2 -0.3 13 1-13 296-309 (432)
54 1n3l_A Tyrosyl-tRNA synthetase 31.0 9.4 0.00032 33.2 -0.3 24 1-29 223-247 (372)
55 3hv0_A Tryptophanyl-tRNA synth 28.8 11 0.00037 33.1 -0.3 13 1-13 267-280 (393)
56 3vgj_A Tyrosyl-tRNA synthetase 28.2 15 0.0005 32.0 0.5 13 1-13 248-261 (373)
57 3hzr_A Tryptophanyl-tRNA synth 26.9 16 0.00053 32.0 0.4 23 1-28 270-293 (386)
58 4g6z_A Glutamate-tRNA ligase; 25.0 1E+02 0.0035 27.8 5.4 45 1-46 265-311 (490)
59 2j5b_A Tyrosyl-tRNA synthetase 24.9 16 0.00056 31.4 0.2 13 1-13 233-246 (348)
60 2dlc_X Tyrosyl-tRNA synthetase 24.9 14 0.00048 32.4 -0.3 24 1-29 228-252 (394)
61 3foc_A Tryptophanyl-tRNA synth 24.4 17 0.00057 32.6 0.1 11 1-11 334-345 (451)
62 3tze_A Tryptophanyl-tRNA synth 24.2 17 0.00058 32.0 0.1 13 1-13 290-303 (406)
63 3prh_A Tryptophanyl-tRNA synth 23.6 20 0.00067 31.4 0.4 12 1-12 227-241 (388)
64 2cya_A Tyrosyl-tRNA synthetase 22.6 19 0.00065 31.2 0.1 24 1-29 239-263 (364)
65 3a8g_A NitrIle hydratase subun 21.8 17 0.00057 28.7 -0.3 41 8-49 138-192 (207)
66 2cyc_A Tyrosyl-tRNA synthetase 21.6 17 0.00057 31.7 -0.5 24 1-29 252-276 (375)
67 3sz3_A Tryptophanyl-tRNA synth 21.1 21 0.00073 30.6 0.1 13 1-13 202-217 (341)
68 1pd3_A Nonstructural protein N 20.0 25 0.00086 21.3 0.3 20 100-119 33-52 (58)
No 1
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=9.5e-45 Score=338.68 Aligned_cols=215 Identities=29% Similarity=0.478 Sum_probs=188.3
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||||+|.|++++||+|++||||++.+++++|++||++.+.+++|++|+|++||+++|+..+... .++.+|....
T Consensus 324 MSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~-~~~~~~~~~~ 402 (542)
T 3u1f_A 324 ISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKIN-VNGEWPSPAA 402 (542)
T ss_dssp CBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTS-TTSBCCCCCC
T ss_pred eccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhc-ccCCCCccch
Confidence 999999999999999999999999999998999999999999999999999999999999999876543 4455565555
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIA 160 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l~ 160 (248)
....|+++++.++++.+.+.++|++|+|+.|++.|++|++.+|+|++..+||++++++ .+++.+++++++++++.++
T Consensus 403 ~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~Y~~~~~pw~l~k~d---~~~~~~~l~~~~~~l~~~~ 479 (542)
T 3u1f_A 403 YTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINAYVTDMAPWKLVKTD---PERLRTVLYITLEGVRVTT 479 (542)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC---HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhcCC---HHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999999999999999999999999999998764 3467778999999999999
Q ss_pred HHhhccccHHHHHHHHHhCCCcccccCCCccccccCCCCCCCccC---CCCCccccCCcccccc
Q 039609 161 VALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMA---QPKPVFGRIELKTGTE 221 (248)
Q Consensus 161 ~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~w~~~~~~~~~~~~~i~---~~~~lf~ki~~~~~~~ 221 (248)
+||+||||++||+||++||++.... ..+....|+.+++|+.++ ++++||+||+.++++.
T Consensus 480 ~ll~P~~P~~aeei~~~Lg~~~~~~--~~~~~~~~~~l~~g~~i~~~~~~~~LF~kie~e~~e~ 541 (542)
T 3u1f_A 480 LLLSPILPRKSVVIFDMLGVPEVHR--KGIENFEFGAVPPGTRLGPAVEGEVLFSKRSTENTKS 541 (542)
T ss_dssp HHHTTTSHHHHHHHHHHHTCCGGGG--SSGGGGSTTCSCTTCBCCCCCTTCCSSCCCCCCC---
T ss_pred HHHHhHhHHHHHHHHHHCCCCCccc--cchhhccccCCCCCCCcCCcCCCCCCcCCCChhhhhc
Confidence 9999999999999999999976432 234455677788899886 4689999999987653
No 2
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=9.2e-44 Score=332.93 Aligned_cols=218 Identities=28% Similarity=0.475 Sum_probs=190.9
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||||+|.|++++||+|++||||++.+++++|++|+++.+.+++|++|+++++|+++|+++++. ++++.+|....
T Consensus 340 MSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~-~~~g~~p~~~~ 418 (564)
T 3kfl_A 340 ISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKI-NVNGMWPEPAE 418 (564)
T ss_dssp CCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTT-STTSBCCCCCC
T ss_pred ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCcCCCCCC
Confidence 99999999999999999999999999999899999999999999999999999999999999999988 67777775444
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIA 160 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l~ 160 (248)
....|++++..++.+.+.+.++|++|+|+.|++.+++|++.+|+|++..+||++.+++ .+++.+++++++++++.++
T Consensus 419 ~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~~~~n~Y~~~~kpW~l~~~~---~~~~~~~~~~l~~~l~~l~ 495 (564)
T 3kfl_A 419 YSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLNAYVTENAPWKLVKMD---TARLGTVLYVTMEGLRICT 495 (564)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTTC---HHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcCChhhhcCC---HHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999998743 3456678899999999999
Q ss_pred HHhhccccHHHHHHHHHhCCCcccccCCCccccccCCCCCCCccCCC---CCccccCCccccccccC
Q 039609 161 VALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQP---KPVFGRIELKTGTEDGG 224 (248)
Q Consensus 161 ~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~w~~~~~~~~~~~~~i~~~---~~lf~ki~~~~~~~~~~ 224 (248)
++|+||||++|++||++||.+.... ..|.+..++.+++|+.++++ .|||+||+.+.++++.+
T Consensus 496 ~lL~P~~P~~ae~i~~~Lg~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~lf~r~~~~~~~~~~~ 560 (564)
T 3kfl_A 496 MFLQPVMPQKAKEIMDALGVPEAAR--VGMENYLFGIVKPGTKIAGLAEGQVVFQKVTLPTEEGERS 560 (564)
T ss_dssp HHHTTTSHHHHHHHHHHHTCCGGGS--SSGGGSSSCCSCTTCBCCCCCTTCCSSCCCCCC-------
T ss_pred HHHHhHhhHHHHHHHHHcCCCcccc--cCHhHhhcccCCCCCCcCCCCCCCCCcCCCCcchhhhhhh
Confidence 9999999999999999999875321 26777666667889999999 99999999998887765
No 3
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=1.8e-42 Score=331.70 Aligned_cols=213 Identities=19% Similarity=0.337 Sum_probs=189.6
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||||+|.+++++||+|++||||++.+++++|++||++.|.+++|++|+++++|+++|+.+++.+++++.+|....
T Consensus 345 MSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~~ 424 (722)
T 1rqg_A 345 FSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRYFDGVVPERGE 424 (722)
T ss_dssp CBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHSTTBCCCCCC
T ss_pred eeeeCCCcCCHHHHHHhcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc
Confidence 99999999999999999999999999999889999999999999999999999999999999999998888776664333
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIA 160 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l~ 160 (248)
....|++++..++.+...+.++|++|+|+.|++.+++|++.+|+|++..+||.+.+++ .+++.+++++++++++.++
T Consensus 425 ~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~~~~n~Yi~~~kpw~~~k~~---~~~~~~vl~~l~~~l~~l~ 501 (722)
T 1rqg_A 425 LDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRYFDHKQPWKTAKED---KVRTGTTVNISLQIVKALG 501 (722)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHTTTC---HHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCchhhcCCC---HHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999987642 3456678899999999999
Q ss_pred HHhhccccHHHHHHHHHhCCCcccccCCCccccccCCCCCCCccCCCCCccccCCcccccccc
Q 039609 161 VALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIELKTGTEDG 223 (248)
Q Consensus 161 ~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~w~~~~~~~~~~~~~i~~~~~lf~ki~~~~~~~~~ 223 (248)
+||+|||||+|++||++||.+.. ..|+.. .++.|+.++++.|||+||+.++++++.
T Consensus 502 ~lL~P~~P~~aeei~~~L~~~~~----~~w~~~---~~~~g~~~~~~~~lf~ri~~~~~~~~~ 557 (722)
T 1rqg_A 502 ILLEPFLPDASEKIWHLLNLDEV----KRWEFR---ELPAGHKVRKPEILFKKVTDDQIIYFI 557 (722)
T ss_dssp HHHTTTCHHHHHHHHHHTTCCSC----CCSSCC---CCCTTCBCCCCCCSCCCCCHHHHHHHH
T ss_pred HHhhccccHHHHHHHHHcCCCcc----cCchhc---cCCCCCCcCCCCCCcCCCCHHHHHHHH
Confidence 99999999999999999998531 256543 356799999999999999998876543
No 4
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=2.9e-42 Score=321.38 Aligned_cols=214 Identities=30% Similarity=0.558 Sum_probs=179.2
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||||+|.|++++||+|++||||++.+++++|++|+++.+.++.|++|++++||+++|+++++.+++++.+|....
T Consensus 322 MSKS~GNvi~p~d~i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~~p~~~~ 401 (536)
T 4dlp_A 322 MSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGKVPQPGA 401 (536)
T ss_dssp --------CCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCC
T ss_pred ecccCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc
Confidence 99999999999999999999999999999889999999999999999999999999999999999998888777775444
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIA 160 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l~ 160 (248)
....|++++..++++.+.+.++|++|+++.|++.+++|++.+|+|++..+||.+.+++ .+++.+++++++++++.++
T Consensus 402 ~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~Y~~~~k~w~l~~~~---~~~~~~~~~~l~~~l~~~~ 478 (536)
T 4dlp_A 402 FSEADKAILDQADAALETARKAMDDQALHLALGAIFAVVAEANRYFAGQEPWALRKTD---PARMGTVLYVTAEVLRRVG 478 (536)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC---HHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCchhhcCCC---HHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999987643 3455667899999999999
Q ss_pred HHhhccccHHHHHHHHHhCCCcccccCCCccccccCCCCCCCccCCCCCccccCCccccc
Q 039609 161 VALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIELKTGT 220 (248)
Q Consensus 161 ~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~w~~~~~~~~~~~~~i~~~~~lf~ki~~~~~~ 220 (248)
++|+||||++|++||++||++... ..|.+.....+.+|+.++++.|||+||+.++.+
T Consensus 479 ~lL~P~~P~~aeei~~~L~~~~~~---~~~~~~~~~~~~~g~~~~~~~~lf~ri~~~~~~ 535 (536)
T 4dlp_A 479 IMVQPFIPQSAEKLLDILAVPADK---RQFADVLASPLAGGTDLPAPQPVFPRYVEADEQ 535 (536)
T ss_dssp HHHTTTSHHHHHHHHHTTTCCTTS---CSTHHHHHCCCCTTCBCCCCCCSSCCCC-----
T ss_pred HHhcCcccHHHHHHHHHcCCCccc---cCHHHhhhccCCCCCCcCCCCCCCCCCCCcccC
Confidence 999999999999999999997532 356554322578899999999999999976544
No 5
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=7.1e-40 Score=304.62 Aligned_cols=212 Identities=34% Similarity=0.566 Sum_probs=182.8
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||||+|.|++++||+|++|||+++.+++++|++||++.+.+..|++|+++++|+++|+..++.+++++.+|....
T Consensus 311 MSKS~GN~v~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~~~~~~~ 390 (524)
T 2x1l_A 311 MSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAAVPDPGE 390 (524)
T ss_dssp EETTTEESSCHHHHHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTBCCCCCC
T ss_pred cCCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc
Confidence 99999999999999999999999999998889999999999999999888899999999999998887766555543223
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCc-chHHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGG-AASEAAAKDLVIILEAMRII 159 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~-~~~~~~~~~l~~~~~~l~~l 159 (248)
....|++++..+..+...+.++|++|+++.|+..+++|++.+|+|++..+||.+.+... .+.+++.+++++++++++.+
T Consensus 391 ~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k~w~l~~~~~~~~~~~~~~~l~~l~~~l~~~ 470 (524)
T 2x1l_A 391 FTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLGAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIA 470 (524)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCChhhhcCccccCHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999887521 12334566788999999999
Q ss_pred HHHhhccccHHHHHHHHHhCCCcccccCCCccccccCCCCCCCccCCCCCccccCCc
Q 039609 160 AVALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIEL 216 (248)
Q Consensus 160 ~~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~w~~~~~~~~~~~~~i~~~~~lf~ki~~ 216 (248)
+++|+|||||+||+||++||.+... ..|.+... .+.+|+.++++.|||+||+.
T Consensus 471 ~~ll~P~~P~~aeei~~~L~~~~~~---~~~~~~~~-~~~~~~~~~~~~~lf~~~~~ 523 (524)
T 2x1l_A 471 SLLLQPVMPESTAKLLDLLGQPTDE---RDFSAIAN-RIKPGTSLPAPSGIFPRYQN 523 (524)
T ss_dssp HHHTTTTCHHHHHHHHHHTTCCTTS---CSGGGGSS-CCCTTCBCCCCCCSSCCCC-
T ss_pred HHHHhhhhhHHHHHHHHHcCCCccc---cchhHhhh-cCCCCCCCCCCCCCCCCCCC
Confidence 9999999999999999999986532 35655432 36789999999999999975
No 6
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=4.7e-40 Score=307.93 Aligned_cols=209 Identities=23% Similarity=0.408 Sum_probs=184.4
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCccc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCC
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFG-NDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDS 79 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~-~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~ 79 (248)
||||+||||+|.|++++||+|++||||++.++.+ +|++|+++.+.+++|++|++++||+++|+.+++.+++++.+|.
T Consensus 346 MSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~~~~-- 423 (560)
T 3h99_A 346 MSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLAS-- 423 (560)
T ss_dssp CCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHHHTTHHHHHHHSTTBCCS--
T ss_pred ccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--
Confidence 9999999999999999999999999999988877 8999999999999999999999999999999988877766553
Q ss_pred cCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHH
Q 039609 80 AVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRII 159 (248)
Q Consensus 80 ~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l 159 (248)
...|++++..++.++..+.++|++|+|+.|++.+++|++.+|+|++..+||.+.++... .+++..++++++++++.+
T Consensus 424 --~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~l~k~~~~-~~~~~~~~~~~~~~l~~~ 500 (560)
T 3h99_A 424 --ELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQAPWVVAKQEGR-DADLQAICSMGINLFRVL 500 (560)
T ss_dssp --SCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTSTTC-HHHHHHHHHHHHHHHHHH
T ss_pred --ccccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhhcCCcCc-HHHHHHHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999999999999999988765432 344566788889999999
Q ss_pred HHHhhccccHHHHHHHHHhCCCcccccCCCccccccCCCCCCCccCCCCCccccCCccccccc
Q 039609 160 AVALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIELKTGTED 222 (248)
Q Consensus 160 ~~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~w~~~~~~~~~~~~~i~~~~~lf~ki~~~~~~~~ 222 (248)
++||+||||++||+||++||++ ..|+.... .+ .|+.++++.+||+||+.+.+++.
T Consensus 501 ~~lL~P~~P~~aeei~~~L~~~------~~w~~~~~-~~-~~~~i~~~~~lf~ri~~~~~~~~ 555 (560)
T 3h99_A 501 MTYLKPVLPKLTERAEAFLNTE------LTWDGIQQ-PL-LGHKVNPFKALYNRIDMRQVEAL 555 (560)
T ss_dssp HHHHTTTCHHHHHHHHHHHTSC------CCTGGGGS-CC-CSCBCCCCSCSCCCCCHHHHHHH
T ss_pred HHHHhccccHHHHHHHHHcCCC------CChhhhhc-cC-CCCCCCCCCcCCCCCCHHHHHHH
Confidence 9999999999999999999985 36765543 23 59999999999999998776543
No 7
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=9.2e-39 Score=295.36 Aligned_cols=202 Identities=29% Similarity=0.484 Sum_probs=177.5
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||+|+|.|++++||+|++|||+++.+++++|++||++.+.+..|++|+++++|+++|+.+++.+..++.++
T Consensus 296 MSKS~GN~i~~~dli~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~~~---- 371 (497)
T 2csx_A 296 MSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGGEVS---- 371 (497)
T ss_dssp CCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHSTTCBC----
T ss_pred eCCcCCCCCCHHHHHHHCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----
Confidence 9999999999999999999999999999888999999999999999988889999999999999988776544333
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIA 160 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l~ 160 (248)
...|++++..++.+...+.++|++|+++.|+..+++|++.+|+|++..+||.+.+++ ..+++.+++++++++++.++
T Consensus 372 -~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~k~~~~~~~~--~~~~~~~~~~~~~~~l~~~~ 448 (497)
T 2csx_A 372 -GARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFTSYLNKYVDEKQPWALNKER--KKEELQKVLYALVDGLFVLT 448 (497)
T ss_dssp -CCCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTS--CHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhhcccc--cHHHHHHHHHHHHHHHHHHH
Confidence 246789999999999999999999999999999999999999999999999876642 23445677899999999999
Q ss_pred HHhhccccHHHHHHHHHhCCCcccccCCCccccccCCCCCCCccCCCCCccccCCc
Q 039609 161 VALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIEL 216 (248)
Q Consensus 161 ~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~w~~~~~~~~~~~~~i~~~~~lf~ki~~ 216 (248)
++|+|||||+||+||++||.+. ..|.+..|+.+ |+.++++.|||+||+.
T Consensus 449 ~ll~P~~P~~aeei~~~L~~~~-----~~~~~~~~~~~--~~~~~~~~~lf~~~~~ 497 (497)
T 2csx_A 449 HLLYPITPNKMKEALQMLGEKE-----FLKELKPYSKN--TYKLGERKILFPKREG 497 (497)
T ss_dssp HHHTTTSHHHHHHHHHHTTCSC-----CCSSCCSCCCS--CBCCCCCCCSSCCCCC
T ss_pred HHhcCccCHHHHHHHHHcCCCc-----cchhhcccccC--CCcCCCCCCCCCCCCC
Confidence 9999999999999999999863 24655555544 9999999999999963
No 8
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=6e-38 Score=290.14 Aligned_cols=202 Identities=27% Similarity=0.465 Sum_probs=176.2
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||+|+|.|++++||+|++|||+++.+++++|++||++.+.+..|+.|+++++|+++|+..++.+.+++.++..
T Consensus 298 MSKS~GN~i~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~-- 375 (500)
T 2d5b_A 298 MSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGRIPEP-- 375 (500)
T ss_dssp CCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCC--
T ss_pred ccccCCCCCCHHHHHHhcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCch--
Confidence 999999999999999999999999999987899999999999999998889999999999999888776655544421
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIA 160 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l~ 160 (248)
.+++++..++++.+.+.++|++|+++.|+..+++|++.+|+|++..+||.+.+++. +++.+++++++++++.++
T Consensus 376 ---~~~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k~w~~~~~~~---~~~~~~~~~l~~~l~~~~ 449 (500)
T 2d5b_A 376 ---VAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPWELFKKEP---EEARAVLYRVVEGLRIAS 449 (500)
T ss_dssp ---CCCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCH---HHHHHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhhccCcH---HHHHHHHHHHHHHHHHHH
Confidence 13677788889999999999999999999999999999999999999998765432 345567889999999999
Q ss_pred HHhhccccHHHHHHHHHhCCCcccccCCCcccc-ccCCCCCCCccCCCCCccccC
Q 039609 161 VALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDT-KWGGLKGGQVMAQPKPVFGRI 214 (248)
Q Consensus 161 ~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~w~~~-~~~~~~~~~~i~~~~~lf~ki 214 (248)
++|+|||||+||+||++||.+. ...|.+. .|+.+.+|+.++++.|||+||
T Consensus 450 ~ll~P~~P~~aeei~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~lf~~~ 500 (500)
T 2d5b_A 450 ILLTPAMPDKMAELRRALGLKE----EVRLEEAERWGLAEPRPIPEEAPVLFPKK 500 (500)
T ss_dssp HHHTTTSHHHHHHHHHHTTCCS----SCCGGGGGSSCCSCCCBCCSCCCCSSCCC
T ss_pred HHhhCcccHHHHHHHHHcCCCc----ccChhhhhhcccCCCCCCCCCCCCCCCCC
Confidence 9999999999999999999863 2357654 466678899999999999996
No 9
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=99.97 E-value=3.4e-30 Score=250.12 Aligned_cols=166 Identities=23% Similarity=0.312 Sum_probs=139.1
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||||+|.|++++||+|++||||++.+++++|++|+++.+.... .+.++++|+++++.. +.++..+....
T Consensus 529 MSKSlGNvIdP~dli~~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~--~f~nkl~N~~rf~~~----~~~~~~~~~~~ 602 (862)
T 1gax_A 529 MSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMAR--NFANKLYNAARFVLL----SREGFQAKEDT 602 (862)
T ss_dssp CCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHH--HHHHHHHHHHHHHHH----HSSSCCCCBCC
T ss_pred ccccCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCccCHHHHHHHH--HHHHHHHHHHHHHHh----cccCCCCcccc
Confidence 999999999999999999999999999998899999999999998864 478999999755443 22232221122
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--HHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDIS--NAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRI 158 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~--~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~ 158 (248)
....|+|+++.++.++..+.++|++|+|+.|+..+++|+ ..||+|++..+||- +. + . ..+..++.++++.
T Consensus 603 ~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~l-~~-~-~-----~~~~~~l~~~l~~ 674 (862)
T 1gax_A 603 PTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPAL-KA-G-N-----AHTLRTLEEVLAV 674 (862)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTTHHHHHHHHH-HT-T-B-----HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhHHHHHHcchhh-hc-c-H-----HHHHHHHHHHHHH
Confidence 456799999999999999999999999999999999998 58999999999973 32 2 1 1234567778899
Q ss_pred HHHHhhccccHHHHHHHHHhCC
Q 039609 159 IAVALSPVTPNLCWRIYEQLGY 180 (248)
Q Consensus 159 l~~lL~P~~P~~ae~i~~~Lg~ 180 (248)
+++||+|||||+||+||+.|+.
T Consensus 675 ~~~lL~P~~P~~aEeiw~~L~~ 696 (862)
T 1gax_A 675 LLKLLHPMMPFLTSELYQALTG 696 (862)
T ss_dssp HHHHHTTTSHHHHHHHHHHHHC
T ss_pred HHHHHhhhhhHHHHHHHHhcCC
Confidence 9999999999999999999974
No 10
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=99.96 E-value=2.3e-29 Score=244.50 Aligned_cols=173 Identities=17% Similarity=0.260 Sum_probs=141.0
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCccc-C--
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLV-V-- 77 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~-~-- 77 (248)
||||+||||+|.|++++||+|++||||++.+++++|++||++.+..++ +++.++++|+++|+..+.. .++..| .
T Consensus 592 MSKS~GNvV~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~-~~~~~kl~N~~~~~~~~~~--~~~~~~~~~~ 668 (821)
T 1ile_A 592 MSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETV-RDYFLTLWNVYSFFVTYAN--LDRPDLKNPP 668 (821)
T ss_dssp CCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEECCHHHHHHHH-HHTHHHHHHHHHHHHHHHH--HHCCCTTSCC
T ss_pred CCccCCCCCCHHHHHHHhCHHHHHHHHHhCCCCCCCcEecHHHHHHHH-HHHHHHHHHHHHHHHHhhc--cccCCccccc
Confidence 999999999999999999999999999998889999999999998854 3578999999998753321 112111 1
Q ss_pred -CCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--HHHhHHhhhcC--CcccccCCcchHHHHHHHHHHH
Q 039609 78 -DSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDIS--NAGNSYMDEHV--PWSRFKQGGAASEAAAKDLVII 152 (248)
Q Consensus 78 -~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~--~~~n~yl~~~k--pW~l~k~~~~~~~~~~~~l~~~ 152 (248)
.......|+++++.++.++..+.++|++|+|+.|+..+++|+ ..+|.|++..+ ||...+.. + + ..++.++
T Consensus 669 ~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~~~~~~~~~~-~---r-~~~~~~l 743 (821)
T 1ile_A 669 PPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNEDAL-D---R-EAAYATL 743 (821)
T ss_dssp CSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHHHHHHHTCTTTS-S---T-THHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcH-H---H-HHHHHHH
Confidence 112346789999999999999999999999999999999999 78999999875 47654311 1 1 1344567
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHhCCC
Q 039609 153 LEAMRIIAVALSPVTPNLCWRIYEQLGYS 181 (248)
Q Consensus 153 ~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~ 181 (248)
.++++.+++||+|||||+||+||++|+..
T Consensus 744 ~~~l~~~~~lLaP~~P~~aeelw~~L~~~ 772 (821)
T 1ile_A 744 YEALVLVATLAAPFTPFLAEVLWQNLVRS 772 (821)
T ss_dssp HHHHHHHHHHHTTTSTTHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCccchHHHHHHHhcccc
Confidence 77889999999999999999999999863
No 11
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=99.96 E-value=9.8e-29 Score=241.61 Aligned_cols=174 Identities=17% Similarity=0.234 Sum_probs=140.2
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcC--CcccCC
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQ--STLVVD 78 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~--~~~~~~ 78 (248)
||||+||||+|.|++++||+|++|||+++ +++++|++||++.+... .++.++++|++++++..+..+.. +.++.
T Consensus 596 MSKSlGNvV~P~dvi~~yGaDalR~~lls-~~~~~D~~fs~~~l~~~--~~~~~kl~n~~r~~l~nl~~~~~~~~~v~~- 671 (917)
T 1ffy_A 596 MSKSLGNVIVPDQVVKQKGADIARLWVSS-TDYLADVRISDEILKQT--SDDYRKIRNTLRFMLGNINDFNPDTDSIPE- 671 (917)
T ss_dssp CCSSSSCCCCHHHHHHHTCHHHHHHHHHT-SCTTSCEECCHHHHHHH--HHHHHHHHHHHHHHHHTSTTCCHHHHCCCG-
T ss_pred cccccCCcCChHHHHHhCCHHHHHHHHhc-cCCCCCcccCHHHHHHH--HHHHHHHHHHHHHHHhhhhccCcccccCCc-
Confidence 99999999999999999999999999998 99999999999999875 44678899998887765432110 11221
Q ss_pred CcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHH
Q 039609 79 SAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISN--AGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAM 156 (248)
Q Consensus 79 ~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~--~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l 156 (248)
......|++++..+++++..+.++|++|+|+.|++.+++|+. ++|.|++..+||... .+.+..++ .....++..++
T Consensus 672 ~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~-~~~~~~~r-~~~~~~l~~~l 749 (917)
T 1ffy_A 672 SELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYI-EQRDSHIR-RSMQTVLYQIL 749 (917)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHHHHHHTT-SCTTCHHH-HHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhc-cCCCcHHH-HHHHHHHHHHH
Confidence 123567999999999999999999999999999999999997 899999999996432 22111222 22334556677
Q ss_pred HHHHHHhhccccHHHHHHHHHhCC
Q 039609 157 RIIAVALSPVTPNLCWRIYEQLGY 180 (248)
Q Consensus 157 ~~l~~lL~P~~P~~ae~i~~~Lg~ 180 (248)
+.+++||+|||||+||+||+.|+.
T Consensus 750 ~~l~~lLaP~~P~~aEeiw~~l~~ 773 (917)
T 1ffy_A 750 VDMTKLLAPILVHTAEEVWSHTPH 773 (917)
T ss_dssp HHHHHHHTTTSHHHHHHHHTTSTT
T ss_pred HHHHHHhcccccHHHHHHHHHccc
Confidence 788999999999999999999985
No 12
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=99.95 E-value=7.8e-28 Score=233.72 Aligned_cols=159 Identities=18% Similarity=0.273 Sum_probs=129.8
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||||+|.+++++||+|++||||++.+++++|++||++.+... ..+.++++|++.++.. ...+....
T Consensus 651 MSKS~GNvv~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~--~~~l~rl~n~~~~~~~-------~~~~~~~~ 721 (810)
T 1wkb_A 651 MSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKL--RKQIERFYELISQFAE-------YEVKGNVE 721 (810)
T ss_dssp CCTTTTCCCBHHHHHHHHCHHHHHHHHHHHCCTTCCEEECHHHHHHH--HHHHHHHHHHHHHHHT-------CCCCSCCC
T ss_pred hhhcCCCcCCHHHHHHHcChHHHHHHHHhcCCCCCCcccCHHHHHHH--HHHHHHHHHHHHHHHh-------ccCccccc
Confidence 99999999999999999999999999997799999999999988765 3355677776665532 11121222
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHH-HHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAV-LDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRII 159 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i-~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l 159 (248)
....|++++..++.++..+.++|++|+|+.|+..+ +.+++.+|+|++..++ .+. ..+.+++.++++.+
T Consensus 722 ~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~~~~n~yi~~~k~-----~~~------~~~~~~l~~~l~~l 790 (810)
T 1wkb_A 722 LKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEG-----RDD------EAKRYVLRTLADVW 790 (810)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTT-----CCC------HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcC-----cch------hHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999864 6999999999998764 111 11245778889999
Q ss_pred HHHhhccccHHHHHHHHHhC
Q 039609 160 AVALSPVTPNLCWRIYEQLG 179 (248)
Q Consensus 160 ~~lL~P~~P~~ae~i~~~Lg 179 (248)
++||+|||||+||+||++||
T Consensus 791 ~~lLaP~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 791 VRLMAPFTPHICEELWEKLG 810 (810)
T ss_dssp HHHHTTTSHHHHHHHHHHCC
T ss_pred HHHHhhhhhHHHHHHHHhcC
Confidence 99999999999999999987
No 13
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=99.95 E-value=1.6e-27 Score=234.72 Aligned_cols=162 Identities=17% Similarity=0.261 Sum_probs=132.8
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||||+|.+++++||+|++||||++.+++++|++|+++.+.... .+.++++|++.++... ..+....
T Consensus 651 MSKS~GNvv~p~d~i~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~--~~l~rl~n~~~~~~~~-------~~~~~~~ 721 (967)
T 1wz2_A 651 MSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLR--KQIERFYELISQFAEY-------EVKGNVE 721 (967)
T ss_dssp CCTTTCCCCBHHHHHHTTCHHHHHHHHHHHCCTTCCEEECHHHHHHHH--HHHHHHHHHHHHHHSS-------CCCCCCC
T ss_pred ccccccCCCCHHHHHHHhChHHHHHHHHhCCCCCCCcccCHHHHHHHH--HHHHHHHHHHHHHhcC-------CCCCccc
Confidence 999999999999999999999999999987999999999999887653 4567788877665421 1111122
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHH-HHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAV-LDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRII 159 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i-~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l 159 (248)
....|+|+++.++.++.++.++|++|+|+.|+..+ +.+++.+|+|++..++ .. . + ....++.++++.+
T Consensus 722 ~~~~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~~~n~Yi~~~k~-----~~-~---~--~~~~~l~~~l~~l 790 (967)
T 1wz2_A 722 LKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEG-----RD-D---E--AKRYVLRTLADVW 790 (967)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTT-----CC-C---H--HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhccc-----hh-H---H--HHHHHHHHHHHHH
Confidence 34679999999999999999999999999999865 6888999999998764 11 0 1 2345677888999
Q ss_pred HHHhhccccHHHHHHHHHhCCCc
Q 039609 160 AVALSPVTPNLCWRIYEQLGYSN 182 (248)
Q Consensus 160 ~~lL~P~~P~~ae~i~~~Lg~~~ 182 (248)
++||+|||||+||+||+.||.+.
T Consensus 791 ~~LLaP~~P~~aEeiw~~L~~~~ 813 (967)
T 1wz2_A 791 VRLMAPFTPHICEELWEKLGGEG 813 (967)
T ss_dssp HHHHTTTSHHHHHHHHHHSSCCS
T ss_pred HHHhccccchHHHHHHHhcCCCC
Confidence 99999999999999999998643
No 14
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=99.95 E-value=3.3e-27 Score=228.88 Aligned_cols=160 Identities=20% Similarity=0.332 Sum_probs=128.4
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||||+|.|++++||+|++|||+|+.+++++|++||++.+.... .+.++++|++.++.... .....+ ...
T Consensus 640 MSKSkGNvVdP~diIekYGADalRl~ll~~~~~~~dl~~s~~~ie~a~--rfl~rlwn~~~~~~~~~---~~~~~~-~~~ 713 (880)
T 4arc_A 640 MSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGAN--RFLKRVWKLVYEHTAKG---DVAALN-VDA 713 (880)
T ss_dssp CCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHH--HHHHHHHHHHHHHHHTC---CCCCCC-STT
T ss_pred ccCcCCCCCCHHHHHHHcCchHHHHHHHhcCCCCCCcccCHHHHHHHH--HHHHHHHHHHHHHHhcc---cccccc-ccc
Confidence 999999999999999999999999999998899999999999998764 35788888877654310 000111 122
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYE-NLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRII 159 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e-~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l 159 (248)
....|++++..++++++++.++|+ +|+|+.|++.+|+|++.+|+|.. +. .. ...++.++++.+
T Consensus 714 l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efvn~l~k~~~----------~~---~~---~~~~l~~~l~~l 777 (880)
T 4arc_A 714 LTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAPT----------DG---EQ---DRALMQEALLAV 777 (880)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSCC----------SS---HH---HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHhhhc----------cc---hH---HHHHHHHHHHHH
Confidence 356799999999999999999998 89999999999999987776521 11 11 223566778889
Q ss_pred HHHhhccccHHHHHHHHHhCCCc
Q 039609 160 AVALSPVTPNLCWRIYEQLGYSN 182 (248)
Q Consensus 160 ~~lL~P~~P~~ae~i~~~Lg~~~ 182 (248)
++||+|||||+||+||+.||...
T Consensus 778 l~LLaPf~PhiaEElW~~Lg~~~ 800 (880)
T 4arc_A 778 VRMLNPFTPHICFTLWQELKGEG 800 (880)
T ss_dssp HHHHTTTSHHHHHHHHHHTTCSS
T ss_pred HHHHhhccHHHHHHHHHHcCCCC
Confidence 99999999999999999999754
No 15
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=99.95 E-value=7.8e-27 Score=227.33 Aligned_cols=158 Identities=18% Similarity=0.223 Sum_probs=128.7
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||||+|.|++++||+|++|||+++.+++++|++||++.+.... .+.++++|++......+.. ....++ ...
T Consensus 638 MSKSkGNvVdP~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~--~~l~Rl~n~~~~~~~~~~~-~~~~~~-~~~ 713 (878)
T 2v0c_A 638 MSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAW--RFLNRIYRRVAEDREALLE-TSGVFQ-AEA 713 (878)
T ss_dssp CSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHH--HHHHHHHHHHHHHHHHHHT-CCCCCC-GGG
T ss_pred hhccCCCcccHHHHHHHcCccHHHHHHhccCCCCCCceeCHHHHHHHH--HHHHHHHHHHHHHHhcccc-cccccC-ccc
Confidence 999999999999999999999999999998999999999999998763 4677777776654432110 001111 112
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCcccccCCcchHHHHHHHHHHHHHHHHHHH
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIA 160 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l~ 160 (248)
....|+++++.++++++++.++|++|+|+.|+..+++|++..|+|.+.. .. . .++.++++.++
T Consensus 714 l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~~~l~k~~~~~---------~~-----~---~~l~~~l~~l~ 776 (878)
T 2v0c_A 714 LEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDR---------PV-----T---PVYRTAIRYYL 776 (878)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC---------CS-----C---HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhhhcccc---------hh-----H---HHHHHHHHHHH
Confidence 3567999999999999999999999999999999999999999986531 10 0 24667788899
Q ss_pred HHhhccccHHHHHHHHHhC
Q 039609 161 VALSPVTPNLCWRIYEQLG 179 (248)
Q Consensus 161 ~lL~P~~P~~ae~i~~~Lg 179 (248)
+||+|||||+||+||+.||
T Consensus 777 ~LLaPf~P~~aEElw~~Lg 795 (878)
T 2v0c_A 777 QMLFPFAPHLAEELWHWFW 795 (878)
T ss_dssp HHHTTTSHHHHHHHHHHHC
T ss_pred HHHcccchHHHHHHHHHcC
Confidence 9999999999999999998
No 16
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.69 E-value=9.3e-17 Score=150.84 Aligned_cols=134 Identities=14% Similarity=0.110 Sum_probs=108.5
Q ss_pred CCCCcCCccChhHHHHh-------------------------cChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHH
Q 039609 1 MGKSLGNTLEPNELVHN-------------------------FGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANT 55 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~-------------------------yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~ 55 (248)
||||+||+|++.|++++ +|+|++|||+++ ..+.+|++|+++.+.+..+ +....
T Consensus 395 MSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~-~~~~~~~~Fd~d~~~~~~~-~~~~y 472 (592)
T 1iq0_A 395 MSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVK-TEPKKQIDFRYQEALSFEG-DTGPY 472 (592)
T ss_dssp SCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHH-SCTTSCEEECHHHHHCSSS-SSHHH
T ss_pred ccCCCCCccCHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHh-cCCCCCCeecHHHHHHHhc-cchHH
Confidence 99999999999999999 999999999998 5668999999999987643 46678
Q ss_pred HHHHHHHHHHhhHhhcCCcccCCCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCC----
Q 039609 56 IGNLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVP---- 131 (248)
Q Consensus 56 l~N~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kp---- 131 (248)
+++...|+.+++.+...+..+......+.+..+...+..+.+.+..++++++++.++..++++++..|.|++..+|
T Consensus 473 lqya~aR~~sil~k~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~~~~yl~~La~~fn~fy~~~~~~~~~ 552 (592)
T 1iq0_A 473 VQYAHARAHSILRKAGEWGAPDLSQATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYNARENGQPA 552 (592)
T ss_dssp HHHHHHHHHHHHHHHCCCCCCCGGGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCEETTEES
T ss_pred HHHHHHHHHHHHHhhcccCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 8889999999998875432221111234566788888899999999999999999999999999999999999977
Q ss_pred -ccccc
Q 039609 132 -WSRFK 136 (248)
Q Consensus 132 -W~l~k 136 (248)
|.+..
T Consensus 553 ~~vl~~ 558 (592)
T 1iq0_A 553 TPVLTA 558 (592)
T ss_dssp SCSTTS
T ss_pred CceeCC
Confidence 77654
No 17
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.68 E-value=5.3e-17 Score=146.46 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=75.8
Q ss_pred CCCCcCCccChhHHHHh-cChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCC
Q 039609 1 MGKSLGNTLEPNELVHN-FGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDS 79 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~-yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~ 79 (248)
||||+||+|+|.|++++ ||+|++||||++ +++++|++||++.+.++.+. .++++|+++|+ ++ +
T Consensus 292 MSKS~GN~v~~~~ll~~g~g~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~~--l~~l~n~~~~~--------~~--~--- 355 (414)
T 3c8z_A 292 MSKSRGNLVLVSQLRAQGVDPSAIRLGLFS-GHYREDRFWSNEVLDEANAR--LARWRSATALP--------EA--P--- 355 (414)
T ss_dssp --------CBHHHHHHTTCCHHHHHHHHHT-SCTTSCBCCCHHHHHHHHHH--HHHHHHHHTSS--------CB--S---
T ss_pred cccccCCcCCHHHHhhccCCcchheeEEEe-cCcCCCCCcCHHHHHHHHHH--HHHHHHHHHhc--------cc--h---
Confidence 99999999999999999 999999999998 99999999999999987654 57888877543 11 1
Q ss_pred cCchhcHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHhH
Q 039609 80 AVAAEGTAFKDTVEKLVETARGHY-ENLSLSSACEAVLDISNAGNS 124 (248)
Q Consensus 80 ~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~al~~i~~l~~~~n~ 124 (248)
.+.++..++.++| ++|+++.|+..|++|++.+|+
T Consensus 356 -----------~~~~~~~~v~~a~~d~~~~~~Al~~i~~~~~~~n~ 390 (414)
T 3c8z_A 356 -----------DATDVIARVRQYLADDLDTPKALAALDGWCTDALS 390 (414)
T ss_dssp -----------CCHHHHHHHHHHHHBTCCHHHHHHHHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 0145677899999 799999999999999999988
No 18
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.68 E-value=1.5e-16 Score=144.91 Aligned_cols=129 Identities=17% Similarity=0.223 Sum_probs=102.7
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcc--cC-
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTL--VV- 77 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~--~~- 77 (248)
||||+||+|+|.|+++++|+|++|||+++ ..+.+|.+|+++.+.+..|...+..+.+...|+.+++.+...... +.
T Consensus 286 MSKr~Gn~v~l~dll~~~g~dalRy~~l~-~~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~~~~~~~~~ 364 (464)
T 3fnr_A 286 MSKRAGNFILMSDVVDEIGSDALRYIFLS-KKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKA 364 (464)
T ss_dssp C---CCSSCBHHHHHHHHCHHHHHHHTTS-SCTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTCCTTTSTTC
T ss_pred CcCcCCCCCCHHHHHhhccHHHHHHHHHh-cCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 99999999999999999999999999998 678999999999997654443333455677899988877543211 11
Q ss_pred -CCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcC
Q 039609 78 -DSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHV 130 (248)
Q Consensus 78 -~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~k 130 (248)
.......+.+++..+.++.+.+..++++++++.++..+++|++..|.|++..+
T Consensus 365 ~~~~L~~~e~~Ll~~L~~~~~~v~~a~~~~ep~~i~~yL~~La~~~n~fY~~~~ 418 (464)
T 3fnr_A 365 DLQSLNQDGVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENK 418 (464)
T ss_dssp CCTTCCHHHHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHCC
T ss_pred ChhhCChHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCc
Confidence 11233348899999999999999999999999999999999999999999874
No 19
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.67 E-value=8.2e-17 Score=146.92 Aligned_cols=105 Identities=21% Similarity=0.349 Sum_probs=86.3
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||+|+|.|++++||+|++|||+++ +++++|++||++.+.+..+. .++++|+++++ ++.++
T Consensus 267 MSKS~GN~v~~~dll~~~g~dalR~~ll~-~~~~~~~~fs~~~l~~~~~~--l~rl~n~~~~~--------~~~~~---- 331 (461)
T 1li5_A 267 MSKSLGNFFTVRDVLKYYDAETVRYFLMS-GHYRSQLNYSEENLKQARAA--LERLYTALRGT--------DKTVA---- 331 (461)
T ss_dssp CCGGGTCCCBHHHHHTTSCHHHHHHHHHS-SCTTSCEEECHHHHHHHHHH--HHHHHHHHTTC--------CTTSC----
T ss_pred ccccCCCccChhHHhhhCCHHHHHHHHHc-CCcCCCCCCCHHHHHHHHHH--HHHHHHHHHHh--------hcCCC----
Confidence 99999999999999999999999999998 89999999999999887543 35555555432 11111
Q ss_pred CchhcHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHhHHhhh
Q 039609 81 VAAEGTAFKDTVEKLVETARGHY-ENLSLSSACEAVLDISNAGNSYMDE 128 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~al~~i~~l~~~~n~yl~~ 128 (248)
. | .+..+...+.++| ++|+++.|+..++++++.+|+|++.
T Consensus 332 --~-d-----~l~~~~~~~~~am~dd~n~~~Al~~l~~l~~~~N~~~~~ 372 (461)
T 1li5_A 332 --P-A-----GGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAE 372 (461)
T ss_dssp --C-C-----SCHHHHHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --H-H-----HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhc
Confidence 1 2 2456778899999 8999999999999999999999975
No 20
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.63 E-value=6e-16 Score=141.30 Aligned_cols=111 Identities=18% Similarity=0.211 Sum_probs=80.5
Q ss_pred CCCCcCCccChhHHHHh-cChhHHHHHHhccCcccCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHhhHhh--cCCcc
Q 039609 1 MGKSLGNTLEPNELVHN-FGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNA--HLANTIGNLLNRTLGLLKKN--CQSTL 75 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~-yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~--~l~~~l~N~~~r~~~~~~~~--~~~~~ 75 (248)
||||+||+|+|.|++++ ||+|++||||++ .++++|++||++.+.++.+. +|.++++|++.++....... ..+.
T Consensus 300 MSKSlGN~it~~dll~~gyg~d~lR~~lls-~~yr~~l~fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~~~~~~- 377 (501)
T 3sp1_A 300 MSKSRGNFITVKDLEDQNFSPLDFRYLCLT-SHYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPVDLNTLNKDLK- 377 (501)
T ss_dssp -------CCCHHHHHHTTCCHHHHHHHHHT-SCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCTT-
T ss_pred ccccCCCcCCHHHHHhcCCCHHHHHHHHHh-ccCCCCCccCHHHHHHHHHhhHHHHHHHHHHHHHHHhhhccccccccc-
Confidence 99999999999999999 999999999998 59999999999999998777 67888888887753322110 0110
Q ss_pred cCCCcCchhcHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHh
Q 039609 76 VVDSAVAAEGTAFKDTVEKLVETARGHYE-NLSLSSACEAVLDISNAGN 123 (248)
Q Consensus 76 ~~~~~~~~~d~~l~~~l~~~~~~~~~~~e-~~~~~~al~~i~~l~~~~n 123 (248)
. .+ ...+..+...+.++|+ +|+++.|+..|+++++.+|
T Consensus 378 ~-------~~---~~~~~~~~~~f~~am~dDlnt~~al~~l~~~~~~~~ 416 (501)
T 3sp1_A 378 N-------FG---FSVEKEYYDSFVEKISFDLNVAQGLALLWEIIKSDN 416 (501)
T ss_dssp S-------CS---SHHHHHHHHHHHHHHHBTSCHHHHHHHHHHHHHCSS
T ss_pred c-------hh---hhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Confidence 0 00 1124456778899997 9999999999999998764
No 21
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.58 E-value=6.6e-15 Score=133.65 Aligned_cols=104 Identities=17% Similarity=0.225 Sum_probs=82.2
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCcccCCCc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDSA 80 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l~~~l~N~~~r~~~~~~~~~~~~~~~~~~ 80 (248)
||||+||+|+|.|++++||+|++|||+++ +++++|++||++.+.+.. ...++++|++.++. ...+
T Consensus 270 MSKSlGN~i~~~dll~~~g~dalR~~lls-~~yr~~l~fs~~~l~~a~--~~l~rl~~~~~~~~--------~~~~---- 334 (462)
T 3tqo_A 270 MSKSLGNIISIREALKESDVEVLRYFLLS-GHYRNPLSYSKENLENGR--LALERFYLALRGLP--------VVNH---- 334 (462)
T ss_dssp CCTTTTCCCBHHHHHHHSCHHHHHHHHHH-SCTTSCEEECHHHHHHHH--HHHHHHHHHHTTCC--------C-------
T ss_pred ccccCCCcccHHHHHhhcChHHhhhhhcc-CCCCCCcCcCHHHHHHHH--HHHHHHHHHHHHhh--------hccc----
Confidence 99999999999999999999999999998 799999999999998764 23455655554321 1000
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhHHhhh
Q 039609 81 VAAEGTAFKDTVEKLVETARGHYE-NLSLSSACEAVLDISNAGNSYMDE 128 (248)
Q Consensus 81 ~~~~d~~l~~~l~~~~~~~~~~~e-~~~~~~al~~i~~l~~~~n~yl~~ 128 (248)
..+..+...+.++|+ +|+++.|+..|+++++.+|.+++.
T Consensus 335 ---------~~~~~~~~~~~~a~~dD~nt~~a~~~l~~~~~~~n~~~~~ 374 (462)
T 3tqo_A 335 ---------EKTSSYTDRFYEAMDDDFNTPIAFALLFEMVREINRFRDN 374 (462)
T ss_dssp ------------CHHHHHHHHHHTBTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---------hhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhhhcc
Confidence 012345678889997 999999999999999999998763
No 22
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.55 E-value=2.3e-14 Score=135.26 Aligned_cols=127 Identities=12% Similarity=0.130 Sum_probs=107.5
Q ss_pred CCCCcC--CccChhHHHHh---------------------------cChhHHHHHHhccCcccCCCCCCHHHHHHHHHHH
Q 039609 1 MGKSLG--NTLEPNELVHN---------------------------FGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAH 51 (248)
Q Consensus 1 MSKS~G--Nvi~p~dli~~---------------------------yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~ 51 (248)
||||+| |+|++.|++++ +|+|++|||+++ .++.+|++|+++.+.+.. .+
T Consensus 425 MSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~L~-~~~~~~~~Fd~d~~~~~~-~~ 502 (629)
T 2zue_A 425 FSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIK-YSPDKKIIFRWEDVLNFE-GE 502 (629)
T ss_dssp CCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHS-SCTTSCEECCHHHHSCCS-SS
T ss_pred ccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHHHh-cCCCCCCeecHHHHHHHh-cC
Confidence 999999 99999999999 999999999998 567999999999998763 45
Q ss_pred HHHHHHHHHHHHHHhhHhhcCCcc-------cC---CCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 039609 52 LANTIGNLLNRTLGLLKKNCQSTL-------VV---DSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNA 121 (248)
Q Consensus 52 l~~~l~N~~~r~~~~~~~~~~~~~-------~~---~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~ 121 (248)
....+++...|+.+++.+.....+ +. .....+.+..|...+..+...+..++++++++.++..+++|+..
T Consensus 503 t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~p~~l~~yl~~La~~ 582 (629)
T 2zue_A 503 SAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELASL 582 (629)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 778899999999999877532221 10 01123456778889999999999999999999999999999999
Q ss_pred HhHHhhhc
Q 039609 122 GNSYMDEH 129 (248)
Q Consensus 122 ~n~yl~~~ 129 (248)
.|.|++.+
T Consensus 583 fn~fy~~~ 590 (629)
T 2zue_A 583 FNKFYMDH 590 (629)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 99999987
No 23
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.14 E-value=3.4e-10 Score=106.28 Aligned_cols=127 Identities=9% Similarity=0.078 Sum_probs=102.3
Q ss_pred CCCCcCCccChhHHHHhcCh----------------------------hHHHHHHhccCcccCCCCCCHHHHHHHHHHHH
Q 039609 1 MGKSLGNTLEPNELVHNFGS----------------------------DAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHL 52 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~----------------------------D~lR~~ll~~~~~~~d~~fs~~~l~~~~n~~l 52 (248)
||||+||+|++.|++++++. .++||++++ .++.++.+|+++.+.+..+ +.
T Consensus 408 MSkR~G~~v~L~dLlde~~~~a~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls-~~~~s~~~Fd~d~~~~~~g-~t 485 (607)
T 1f7u_A 408 MSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQ-GKRINNYEFKWERMLSFEG-DT 485 (607)
T ss_dssp CCGGGTCCCBHHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHS-SCTTCCEECCHHHHHCCSS-SS
T ss_pred ccCCCCCcccHHHHHHHHHHHHHHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhc-cCCCCCcccCHHHHHHHhc-cc
Confidence 99999999999999999844 479999998 8999999999999976532 34
Q ss_pred HHHHHHHHHHHHHhhHhhcCCccc-----CC-C-cCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHH
Q 039609 53 ANTIGNLLNRTLGLLKKNCQSTLV-----VD-S-AVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSY 125 (248)
Q Consensus 53 ~~~l~N~~~r~~~~~~~~~~~~~~-----~~-~-~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~y 125 (248)
...+.+...|+.+++.+.. +..+ .. . ...+.+..|...+.++.+.+..++++++++..+..+++|+...|.|
T Consensus 486 ~pylqYa~aRi~SIlrka~-~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La~~fn~f 564 (607)
T 1f7u_A 486 GPYLQYAHSRLRSVERNAS-GITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSC 564 (607)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhc-CCCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 4578888899999887642 1110 01 0 1134566788888899999999999999999999999999999999
Q ss_pred hhhcC
Q 039609 126 MDEHV 130 (248)
Q Consensus 126 l~~~k 130 (248)
.+.++
T Consensus 565 Y~~~~ 569 (607)
T 1f7u_A 565 YDVLW 569 (607)
T ss_dssp HHHCC
T ss_pred HHhCC
Confidence 98774
No 24
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=98.64 E-value=1.3e-08 Score=94.32 Aligned_cols=47 Identities=15% Similarity=0.248 Sum_probs=37.5
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhccCcccCCCCCCHH-HHHHHH
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSED-RFIKIV 48 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~~~~~~d~~fs~~-~l~~~~ 48 (248)
||||+||+|+|.++++.||+|++||||++ .++++|.+||++ .+.+..
T Consensus 280 mSKs~Gn~i~~~~~~~~~~pdalR~~l~~-~~~~~~~~fs~~~~l~~~~ 327 (523)
T 1irx_A 280 MSGSKGNVILLSDLYEVLEPGLVRFIYAR-HRPNKEIKIDLGLGILNLY 327 (523)
T ss_dssp ------CCCCHHHHHTTSCHHHHHHHHHS-SCTTSCEEECCSTTHHHHH
T ss_pred CCCcCCCCCCHHHHHHHcCHHHHHHHHHh-cCCCCCceeCcchhHHHHH
Confidence 99999999999999999999999999997 688999999999 777654
No 25
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.23 E-value=0.0028 Score=58.43 Aligned_cols=49 Identities=10% Similarity=0.042 Sum_probs=39.7
Q ss_pred CCCCcCC---------------ccChhHHHHh-cChhHHHHHHhccCcccCCCCCCHHHHHHHHH
Q 039609 1 MGKSLGN---------------TLEPNELVHN-FGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVN 49 (248)
Q Consensus 1 MSKS~GN---------------vi~p~dli~~-yg~D~lR~~ll~~~~~~~d~~fs~~~l~~~~n 49 (248)
||||+|| ..++.++..+ |.++++|.|+++.+--.++.+|+++.|.....
T Consensus 330 LSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~~~~~s~~~L~~~~r 394 (553)
T 3aii_A 330 LSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNR 394 (553)
T ss_dssp --CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSSCBCCCHHHHHHHHH
T ss_pred echhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCCccccccHHHHHHHHH
Confidence 8999998 6788999987 99999999999744336899999999987643
No 26
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=93.39 E-value=0.051 Score=50.09 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=37.3
Q ss_pred CCCCcCC---------------ccChhHHHHh-cChhHHHHHHhccCccc-CCCCCCHHHHHHH
Q 039609 1 MGKSLGN---------------TLEPNELVHN-FGSDAVRYFFLKEVEFG-NDGDYSEDRFIKI 47 (248)
Q Consensus 1 MSKS~GN---------------vi~p~dli~~-yg~D~lR~~ll~~~~~~-~d~~fs~~~l~~~ 47 (248)
||||+|| .+++.++.++ |.++++|.|++. ..+. .+..+++..+.+.
T Consensus 268 LSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~-lG~s~~~~~~e~~~le~~ 330 (553)
T 1qtq_A 268 MSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKR-IGVTKQDNTIEMASLESC 330 (553)
T ss_dssp CCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHH-HCCCSSCCCBCHHHHHHH
T ss_pred ccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHH-cCCCCCccccchhhHHHH
Confidence 8999997 7788999987 999999999998 4444 4555788887764
No 27
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=89.29 E-value=0.19 Score=48.54 Aligned_cols=46 Identities=11% Similarity=0.019 Sum_probs=36.0
Q ss_pred CCCCcCC---------------ccChhHHHHh-cChhHHHHHHhccCccc-CCCCCCHHHHHHH
Q 039609 1 MGKSLGN---------------TLEPNELVHN-FGSDAVRYFFLKEVEFG-NDGDYSEDRFIKI 47 (248)
Q Consensus 1 MSKS~GN---------------vi~p~dli~~-yg~D~lR~~ll~~~~~~-~d~~fs~~~l~~~ 47 (248)
||||+|| .+++.++.++ |.++++|.|++. ..+. .+..+.+..+...
T Consensus 308 LSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~-lG~s~~~~~~e~~~le~~ 370 (851)
T 2hz7_A 308 TSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQ-IGVSRTNRTVDIAVYENA 370 (851)
T ss_dssp CCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHH-SCCCSSCEEECHHHHHHH
T ss_pred ccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHHHHh-cCCCCCcccccHHHHHHH
Confidence 8999987 5678899987 999999999998 4554 5555777777643
No 28
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=88.75 E-value=0.51 Score=42.96 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=32.8
Q ss_pred CCCCcCCccChhHHHHh-cChhHHHHHHhccCccc----CCCCCCHHHHH
Q 039609 1 MGKSLGNTLEPNELVHN-FGSDAVRYFFLKEVEFG----NDGDYSEDRFI 45 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~-yg~D~lR~~ll~~~~~~----~d~~fs~~~l~ 45 (248)
||||.||+ .+.++.++ |.++++|.||+.. .+. .+--|+.+.+.
T Consensus 248 LSKr~g~~-~l~~~r~~G~~peal~~~l~~l-G~s~~~~~~e~~~~~e~i 295 (492)
T 2cfo_A 248 LSKRDGVT-SISDFRAMGYLAPALANYMTLL-GWSPPEGVGELFTLDLAA 295 (492)
T ss_dssp CCTTSSCC-BHHHHHHTTCCHHHHHHHHHHT-TBCCCTTTCSCCCHHHHH
T ss_pred ecccCCcc-cHHHHHHCCCCHHHHHHHHHHh-CCCCCCccccccCHHHHH
Confidence 89999998 78888876 9999999999973 332 23456766654
No 29
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=83.54 E-value=0.68 Score=39.68 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.5
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhcc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKE 30 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~~ 30 (248)
||||.||.|++.| .+|.+|..+++.
T Consensus 215 MSKS~~n~I~l~d-----~p~~i~~Ki~~a 239 (323)
T 2cyb_A 215 MSSSKGNYISVRD-----PPEEVERKIRKA 239 (323)
T ss_dssp CCTTTTCSCBTTC-----CHHHHHHHHHTS
T ss_pred ccCCcCceeCCCC-----CHHHHHHHHHhc
Confidence 9999999999987 599999999973
No 30
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=75.52 E-value=3 Score=37.58 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=32.7
Q ss_pred CCCCcCCccChhHHHHh-cChhHHHHHHhccCcccC--C-CCCCHHHHHH
Q 039609 1 MGKSLGNTLEPNELVHN-FGSDAVRYFFLKEVEFGN--D-GDYSEDRFIK 46 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~-yg~D~lR~~ll~~~~~~~--d-~~fs~~~l~~ 46 (248)
|||+.||+ .+.++.+. |-++++|-||+.. .+.. + ..|+.+.+.+
T Consensus 244 lSKR~g~~-~l~~~~~~G~~peal~~~l~~l-G~~~~~~~~~~~~~el~~ 291 (468)
T 1j09_A 244 ISKRKSHT-SLDWYKAEGFLPEALRNYLCLM-GFSMPDGREIFTLEEFIQ 291 (468)
T ss_dssp CCTTTSCC-BHHHHHHTTCCHHHHHHHHHHH-SCCCTTCCSCCCHHHHHH
T ss_pred cccccchh-hHHHHHHCCCCHHHHHHHHHHh-ccCCcccccCCCHHHHHh
Confidence 89999999 78888876 8899999999873 3321 2 4577666543
No 31
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=72.16 E-value=4.8 Score=36.56 Aligned_cols=29 Identities=7% Similarity=-0.034 Sum_probs=25.3
Q ss_pred CCCCcCCccChhHHHHh-cChhHHHHHHhcc
Q 039609 1 MGKSLGNTLEPNELVHN-FGSDAVRYFFLKE 30 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~-yg~D~lR~~ll~~ 30 (248)
|||+.|+ +++.++.+. |.++++|.|++..
T Consensus 258 LSKR~g~-~~l~~~r~~G~~peAl~~~l~~l 287 (498)
T 2ja2_A 258 LSKRDPQ-SNLFAHRDRGFIPEGLLNYLALL 287 (498)
T ss_dssp CCTTSGG-GBHHHHHHHTCCHHHHHHHHHTS
T ss_pred ccccCCc-ccHHHHHhCCCCHHHHHHHHHHh
Confidence 8999999 478888876 8999999999974
No 32
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=64.90 E-value=6.3 Score=35.68 Aligned_cols=42 Identities=12% Similarity=0.138 Sum_probs=30.9
Q ss_pred CCCCcCCccChhHHHHh-cChhHHHHHHhccCccc--CCCCCCHHHH
Q 039609 1 MGKSLGNTLEPNELVHN-FGSDAVRYFFLKEVEFG--NDGDYSEDRF 44 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~-yg~D~lR~~ll~~~~~~--~d~~fs~~~l 44 (248)
|||+.|+ +.+.++.+. |-++++|-||+.. .+. .+..|+.+.+
T Consensus 256 LSKR~g~-~~l~~~r~~G~~peal~n~l~~l-G~s~~~~e~~s~~e~ 300 (488)
T 3afh_A 256 LSKRHGA-TSVEHFRREGILSRALMNYLALL-GWRVEGDEIFTIEEK 300 (488)
T ss_dssp CCTTTSC-CBHHHHHHHTCCHHHHHHHHHHT-TCCCSSCSCCCHHHH
T ss_pred ccCcCCc-ccHHHHHHCCCCHHHHHHHHHHh-CCCCcccccCCHHHH
Confidence 8999999 588888875 8899999999873 332 2244565544
No 33
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=64.81 E-value=2.2 Score=37.54 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=20.4
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~ 29 (248)
||||.||.|+..|= .-+++.++=++++
T Consensus 294 MSKS~~naI~L~d~--~tsp~~i~qki~~ 320 (392)
T 1y42_X 294 FGKSAGNAIWLDPY--QTSVFDFYGYFVR 320 (392)
T ss_dssp TTBCSSSBCBSSTT--TSCHHHHHHHHHT
T ss_pred ccCCCCCeeeccCC--CCCHHHHHHHHHc
Confidence 99999999998762 2566666666665
No 34
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=63.81 E-value=1.9 Score=38.29 Aligned_cols=27 Identities=15% Similarity=0.259 Sum_probs=20.1
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~ 29 (248)
||||.||.|+..| +.-+++.++=++++
T Consensus 231 MSKS~~naI~L~d--~~tsp~~i~qki~~ 257 (419)
T 2ts1_A 231 FGKTESGTIWLDK--EKTSPYEFYQFWIN 257 (419)
T ss_dssp TTCCSSCCCBSST--TTSCHHHHHHHHHT
T ss_pred ccCCCCCeEecCC--CCCCHHHHHHHHhc
Confidence 9999999999876 23456666666665
No 35
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=63.49 E-value=9.2 Score=34.52 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=24.8
Q ss_pred CCCCcCCccChhHHHHh-cChhHHHHHHhc
Q 039609 1 MGKSLGNTLEPNELVHN-FGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~-yg~D~lR~~ll~ 29 (248)
|||+.|++ .+.++.++ |-++++|.|++.
T Consensus 263 LSKR~g~~-~l~~~~~~G~~peal~~~l~~ 291 (481)
T 2o5r_A 263 LSKRHGAT-SVEAFRDMGYLPEALVNYLAL 291 (481)
T ss_dssp CCGGGSCC-BHHHHHHHTCCHHHHHHHHHT
T ss_pred ccCcCCcc-cHHHHHHCCCCHHHHHHHHHH
Confidence 89999999 88999886 889999988886
No 36
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=63.00 E-value=2.7 Score=37.56 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.7
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~ 29 (248)
||||.||.|+..| +++.++=++++
T Consensus 233 MSKS~~n~I~L~d-----sp~~i~~Ki~~ 256 (432)
T 1h3f_A 233 MSKSLDNYIGLTE-----PPEAMFKKLMR 256 (432)
T ss_dssp CCGGGTCCCBTTS-----CHHHHHHHHHT
T ss_pred cCcCCCCeeCCCC-----CHHHHHHHHhC
Confidence 9999999999987 77777777775
No 37
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=62.89 E-value=2.1 Score=38.10 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=19.9
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~ 29 (248)
||||.||.|+..| +.-+++.++=++++
T Consensus 232 MSKS~~naI~L~d--~~tsp~~i~~ki~~ 258 (420)
T 1jil_A 232 FGKSESGAVWLDA--EKTSPYEFYQFWIN 258 (420)
T ss_dssp TTBCSSSBCBSST--TTSCHHHHHHHHHT
T ss_pred ccCCCCCeEecCC--CCCCHHHHHHHHhc
Confidence 9999999999876 23456666666664
No 38
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=61.93 E-value=2 Score=36.76 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=23.1
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~ 29 (248)
||||.||.|+..| ++.+++.++=++++
T Consensus 236 MSKS~~n~I~L~d--~~tsp~~~~~ki~~ 262 (322)
T 2yxn_A 236 FGKTEGGAVWLDP--KKTSPYKFYQFWIN 262 (322)
T ss_dssp TTEETTEECBSST--TTSCHHHHHHHHHT
T ss_pred ccCCCCCeeeccC--CCCCHHHHHHHHhC
Confidence 9999999999988 66788888877775
No 39
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=61.06 E-value=2.3 Score=37.91 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=20.3
Q ss_pred CCCCcCC-ccChhHHHHhcChhHHHHHHhc
Q 039609 1 MGKSLGN-TLEPNELVHNFGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~GN-vi~p~dli~~yg~D~lR~~ll~ 29 (248)
||||.|| .|+..| +..+++.++=++++
T Consensus 232 MSKS~~nsaI~L~d--~~tsp~~i~qki~~ 259 (432)
T 2jan_A 232 FGKSTGGGSLWLDP--QMTSPYAWYQYFVN 259 (432)
T ss_dssp TTBCSSSCBCBSST--TTSCHHHHHHHHHT
T ss_pred CCCCCCCCeEEccC--CCCCHHHHHHHHhc
Confidence 9999999 998876 24566666666665
No 40
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=60.84 E-value=3 Score=35.92 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.8
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~ 29 (248)
||||.||.|+..| +++.++=.+++
T Consensus 206 MSKS~~n~I~L~d-----sp~~i~~Ki~~ 229 (340)
T 2g36_A 206 MSKSYGNIINLEI-----SEKELEQTILR 229 (340)
T ss_dssp CCGGGTCCCBTTC-----CHHHHHHHHHT
T ss_pred cCCCCCCeEeeeC-----CHHHHHHHHHh
Confidence 9999999999887 78888877775
No 41
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=57.94 E-value=2.1 Score=37.17 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=15.7
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~ 29 (248)
||||.||.|+..| +.-+++.++=++++
T Consensus 255 MSKS~~naI~L~d--~~tsp~~i~~ki~~ 281 (356)
T 2pid_A 255 LGKSAGNAVWLNR--DKTSPFELYQFFVR 281 (356)
T ss_dssp -------CCBSST--TTSCHHHHHHHHHT
T ss_pred ccCCCCCeeeccC--CCCCHHHHHHHHHc
Confidence 9999999999887 35678888888876
No 42
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=53.51 E-value=8.2 Score=35.86 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=25.5
Q ss_pred CCCCcCCccChhHHHHh-cChhHHHHHHhcc
Q 039609 1 MGKSLGNTLEPNELVHN-FGSDAVRYFFLKE 30 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~-yg~D~lR~~ll~~ 30 (248)
|||+.|+ +.+.++.+. |-++++|.||+..
T Consensus 360 LSKR~g~-~~l~~~~~~G~~peal~~~l~~l 389 (592)
T 3al0_C 360 LSKRHGA-TSVEHFRREGILSRALMNYLALL 389 (592)
T ss_dssp CCTTTCS-SBHHHHHHTTCCHHHHHHHHTTT
T ss_pred ccccCCc-ccHHHHHHCCCCHHHHHHHHHHh
Confidence 8999999 588888885 8899999999873
No 43
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=50.46 E-value=5.2 Score=34.15 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=19.0
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~ 29 (248)
||||.||.|+..| +++.++=.+++
T Consensus 193 MSKS~~n~I~L~d-----~p~~i~~KI~~ 216 (322)
T 3tzl_A 193 MSKSYQNTIDIFS-----SEKTLKKQISS 216 (322)
T ss_dssp CCGGGTCCCBSSC-----CHHHHHHHHHT
T ss_pred CCCCCCCceecCC-----CHHHHHHHHHh
Confidence 9999999998875 56667766664
No 44
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=49.68 E-value=3.7 Score=35.29 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=19.4
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~ 29 (248)
||||.||.|+..| .++.++=.+++
T Consensus 196 MSKS~~n~I~L~d-----~p~~i~~Ki~~ 219 (337)
T 2el7_A 196 MSKSLGNTIGLLE-----PEESIWQKIQH 219 (337)
T ss_dssp CCTTTTCCCBSSS-----CHHHHHHHHHT
T ss_pred cCCCCCCeeeCcC-----CHHHHHHHHHh
Confidence 9999999999876 37777777765
No 45
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=45.63 E-value=5.1 Score=34.66 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=17.9
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~ 29 (248)
||||.||.|+..|= ++.++=.+++
T Consensus 216 MSKS~~n~I~L~d~-----p~~i~~Ki~~ 239 (351)
T 1yi8_B 216 MSKSLGNAIALGDS-----ADEVARKVMG 239 (351)
T ss_dssp CCTTTTCCCBTTCC-----HHHHHHHHHT
T ss_pred cCCCCCCeecCCCC-----HHHHHHHHHh
Confidence 99999999987653 6666666654
No 46
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=44.31 E-value=5.5 Score=33.84 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=11.6
Q ss_pred CCCCcCCccChhH
Q 039609 1 MGKSLGNTLEPNE 13 (248)
Q Consensus 1 MSKS~GNvi~p~d 13 (248)
||||.||.|+..|
T Consensus 205 MSKS~~~~I~L~d 217 (314)
T 2zp1_A 205 MSSSKGNFIAVDD 217 (314)
T ss_dssp CCTTTTCSCBTTC
T ss_pred cCCCCcceecCCC
Confidence 9999999998765
No 47
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=38.22 E-value=7.9 Score=34.52 Aligned_cols=13 Identities=23% Similarity=0.156 Sum_probs=11.2
Q ss_pred CCCCcCC-ccChhH
Q 039609 1 MGKSLGN-TLEPNE 13 (248)
Q Consensus 1 MSKS~GN-vi~p~d 13 (248)
||||.|| .|+..|
T Consensus 303 MSKS~~nsaI~L~D 316 (437)
T 1r6u_A 303 MSASDPNSSIFLTD 316 (437)
T ss_dssp CCTTSSSSCCBTTC
T ss_pred cCCCCCCCeeeccC
Confidence 9999999 898754
No 48
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=36.53 E-value=8.9 Score=33.06 Aligned_cols=13 Identities=31% Similarity=0.345 Sum_probs=11.2
Q ss_pred CCCCcCC---ccChhH
Q 039609 1 MGKSLGN---TLEPNE 13 (248)
Q Consensus 1 MSKS~GN---vi~p~d 13 (248)
||||.|| .|+..|
T Consensus 203 MSKS~~n~~~~I~L~D 218 (348)
T 2yy5_A 203 MSKSSKNQNGVIYLDD 218 (348)
T ss_dssp CCSSCSCGGGCCBTTC
T ss_pred cCCCCCCCCceEeecC
Confidence 9999999 898754
No 49
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=34.18 E-value=8.9 Score=33.67 Aligned_cols=12 Identities=17% Similarity=0.075 Sum_probs=10.2
Q ss_pred CCCCcCC-ccChh
Q 039609 1 MGKSLGN-TLEPN 12 (248)
Q Consensus 1 MSKS~GN-vi~p~ 12 (248)
||||.+| .|+..
T Consensus 254 MSKS~~ns~I~L~ 266 (392)
T 3jxe_A 254 MSASKPETAIYLT 266 (392)
T ss_dssp CCTTSGGGCCBTT
T ss_pred cccCCCCCeeeCC
Confidence 9999999 88654
No 50
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=33.64 E-value=10 Score=34.21 Aligned_cols=13 Identities=23% Similarity=0.156 Sum_probs=11.2
Q ss_pred CCCCcCC-ccChhH
Q 039609 1 MGKSLGN-TLEPNE 13 (248)
Q Consensus 1 MSKS~GN-vi~p~d 13 (248)
||||.|| .|+..|
T Consensus 350 MSKS~~nsaI~L~d 363 (477)
T 1r6t_A 350 MSASDPNSSIFLTD 363 (477)
T ss_dssp CCTTSTTCCCBTTC
T ss_pred cCCCCCCCceeecC
Confidence 9999999 898754
No 51
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=33.18 E-value=7.9 Score=34.04 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=4.6
Q ss_pred CCCCcCCccChhH
Q 039609 1 MGKSLGNTLEPNE 13 (248)
Q Consensus 1 MSKS~GNvi~p~d 13 (248)
||||.||.|+..|
T Consensus 271 MSKS~~~~I~L~D 283 (395)
T 3i05_A 271 MSSSSGTAVLLTD 283 (395)
T ss_dssp -------CCBTTC
T ss_pred CCCCCCCcccCCC
Confidence 9999999998755
No 52
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=32.25 E-value=11 Score=32.10 Aligned_cols=13 Identities=31% Similarity=0.220 Sum_probs=10.7
Q ss_pred CCCCcCC-c--cChhH
Q 039609 1 MGKSLGN-T--LEPNE 13 (248)
Q Consensus 1 MSKS~GN-v--i~p~d 13 (248)
||||.|| . |+..|
T Consensus 193 MSKS~~n~~~~I~L~d 208 (328)
T 1i6k_A 193 MSKSDPNPKAYITLLD 208 (328)
T ss_dssp CCTTCSCGGGCCBTTC
T ss_pred CCCCCCCcCceeeecC
Confidence 9999999 6 87654
No 53
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=31.68 E-value=8.8 Score=34.17 Aligned_cols=13 Identities=15% Similarity=0.089 Sum_probs=7.4
Q ss_pred CCCCcCC-ccChhH
Q 039609 1 MGKSLGN-TLEPNE 13 (248)
Q Consensus 1 MSKS~GN-vi~p~d 13 (248)
||||.|| .|+..|
T Consensus 296 MSKS~~nsaI~L~d 309 (432)
T 2ip1_A 296 MSASDDTTAIFMTD 309 (432)
T ss_dssp ----CGGGCCBTTC
T ss_pred cCCCCCCCeEeccC
Confidence 9999999 898765
No 54
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=31.01 E-value=9.4 Score=33.21 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=12.2
Q ss_pred CCCCcCC-ccChhHHHHhcChhHHHHHHhc
Q 039609 1 MGKSLGN-TLEPNELVHNFGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~GN-vi~p~dli~~yg~D~lR~~ll~ 29 (248)
||||.|| .|+..|= ++.++=.+++
T Consensus 223 MSKS~~ns~I~L~d~-----p~~i~kKi~~ 247 (372)
T 1n3l_A 223 MSSSEEESKIDLLDR-----KEDVKKKLKK 247 (372)
T ss_dssp ------CCSCBTTCC-----HHHHHHHHHT
T ss_pred ccCCCCCCeEeccCC-----HHHHHHHHHH
Confidence 9999999 7887653 6666666654
No 55
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=28.84 E-value=11 Score=33.15 Aligned_cols=13 Identities=31% Similarity=0.417 Sum_probs=4.8
Q ss_pred CCCCcCC-ccChhH
Q 039609 1 MGKSLGN-TLEPNE 13 (248)
Q Consensus 1 MSKS~GN-vi~p~d 13 (248)
||||.+| .|+..|
T Consensus 267 MSKS~~nsaI~L~D 280 (393)
T 3hv0_A 267 MSASVQNSSIFVND 280 (393)
T ss_dssp ------CCCCBTTC
T ss_pred CCCCCCCCeEeccC
Confidence 9999998 787653
No 56
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=28.17 E-value=15 Score=32.02 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=10.5
Q ss_pred CCCCc-CCccChhH
Q 039609 1 MGKSL-GNTLEPNE 13 (248)
Q Consensus 1 MSKS~-GNvi~p~d 13 (248)
||||. ||.|+..|
T Consensus 248 MSKS~~~~~I~L~D 261 (373)
T 3vgj_A 248 MSKSDENSAIFMDD 261 (373)
T ss_dssp CCSSSTTCCCBTTC
T ss_pred CcCCCCCCeeecCC
Confidence 99999 58998753
No 57
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=26.94 E-value=16 Score=32.03 Aligned_cols=23 Identities=9% Similarity=-0.002 Sum_probs=15.7
Q ss_pred CCCC-cCCccChhHHHHhcChhHHHHHHh
Q 039609 1 MGKS-LGNTLEPNELVHNFGSDAVRYFFL 28 (248)
Q Consensus 1 MSKS-~GNvi~p~dli~~yg~D~lR~~ll 28 (248)
|||| .||.|+..| .++.++=-++
T Consensus 270 MSKSd~~~~I~L~D-----~p~~i~kKI~ 293 (386)
T 3hzr_A 270 FDIPSDHNSILLSD-----NAKQVERKIN 293 (386)
T ss_dssp CCCCCTTTSCBTTC-----CHHHHHHHHH
T ss_pred cCcCCCCCeeecCC-----CHHHHHHHHH
Confidence 9999 899998755 4444444443
No 58
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=24.98 E-value=1e+02 Score=27.78 Aligned_cols=45 Identities=16% Similarity=0.290 Sum_probs=32.4
Q ss_pred CCCCcCCccChhHHHHh-cChhHHHHHHhccCc-ccCCCCCCHHHHHH
Q 039609 1 MGKSLGNTLEPNELVHN-FGSDAVRYFFLKEVE-FGNDGDYSEDRFIK 46 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~-yg~D~lR~~ll~~~~-~~~d~~fs~~~l~~ 46 (248)
|||..|. +++.++.+. |.+++++-||+..+- .+..--||.+.+.+
T Consensus 265 LSKR~g~-~sl~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~eli~ 311 (490)
T 4g6z_A 265 MSKRHGA-MSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFTREQFVE 311 (490)
T ss_dssp CCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSSBCCTTCCCCCHHHHHH
T ss_pred ccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhCCCCCCccccCHHHHHh
Confidence 7999986 678888776 899999999997432 12233578777654
No 59
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=24.88 E-value=16 Score=31.37 Aligned_cols=13 Identities=23% Similarity=0.194 Sum_probs=10.5
Q ss_pred CCCCc-CCccChhH
Q 039609 1 MGKSL-GNTLEPNE 13 (248)
Q Consensus 1 MSKS~-GNvi~p~d 13 (248)
||||. ||.|+..|
T Consensus 233 MSKS~~~~~I~L~d 246 (348)
T 2j5b_A 233 MSKSDPQGAIFMDD 246 (348)
T ss_dssp CSTTCGGGSCBTTC
T ss_pred cccCCCCCeEeecC
Confidence 99999 68898653
No 60
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=24.87 E-value=14 Score=32.35 Aligned_cols=24 Identities=21% Similarity=0.095 Sum_probs=11.1
Q ss_pred CCCCcCCc-cChhHHHHhcChhHHHHHHhc
Q 039609 1 MGKSLGNT-LEPNELVHNFGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~GNv-i~p~dli~~yg~D~lR~~ll~ 29 (248)
||||.||. |+..|= ++.+|=.+++
T Consensus 228 MSKS~~ns~I~L~D~-----p~~i~kKI~k 252 (394)
T 2dlc_X 228 MSASDPNSKIDLLEE-----PKQVKKKINS 252 (394)
T ss_dssp ------CCSCBTTCC-----HHHHHHHHHH
T ss_pred CCCCCCCCEEeccCC-----HHHHHHHHHH
Confidence 99999996 987652 5555555554
No 61
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=24.36 E-value=17 Score=32.55 Aligned_cols=11 Identities=27% Similarity=0.096 Sum_probs=8.9
Q ss_pred CCCCcCC-ccCh
Q 039609 1 MGKSLGN-TLEP 11 (248)
Q Consensus 1 MSKS~GN-vi~p 11 (248)
||||.+| .|..
T Consensus 334 MSKS~~ns~I~l 345 (451)
T 3foc_A 334 MSASDPNSAIYL 345 (451)
T ss_dssp CCTTCGGGSCBT
T ss_pred cCCCCCCCeeee
Confidence 9999998 6654
No 62
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=24.24 E-value=17 Score=32.04 Aligned_cols=13 Identities=15% Similarity=0.207 Sum_probs=10.7
Q ss_pred CCCCc-CCccChhH
Q 039609 1 MGKSL-GNTLEPNE 13 (248)
Q Consensus 1 MSKS~-GNvi~p~d 13 (248)
||||. ||.|+..|
T Consensus 290 MSKS~~~~~I~L~D 303 (406)
T 3tze_A 290 MSASDPNSSIYLDD 303 (406)
T ss_dssp SSCSCGGGSCBTTC
T ss_pred CCCCCCCCcccCCC
Confidence 99999 78997754
No 63
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=23.64 E-value=20 Score=31.42 Aligned_cols=12 Identities=25% Similarity=0.008 Sum_probs=10.6
Q ss_pred CCCCc---CCccChh
Q 039609 1 MGKSL---GNTLEPN 12 (248)
Q Consensus 1 MSKS~---GNvi~p~ 12 (248)
||||. ||.|...
T Consensus 227 MSKS~~~~~n~I~L~ 241 (388)
T 3prh_A 227 MSKSDPNQKAYITLL 241 (388)
T ss_dssp CCTTCSSTTSCCBTT
T ss_pred cCCCCCCCCCeeecC
Confidence 99999 9999764
No 64
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=22.59 E-value=19 Score=31.16 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=17.9
Q ss_pred CCCC-cCCccChhHHHHhcChhHHHHHHhc
Q 039609 1 MGKS-LGNTLEPNELVHNFGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS-~GNvi~p~dli~~yg~D~lR~~ll~ 29 (248)
|||| .||.|+..|= ++.++=.+++
T Consensus 239 MSKS~~~~~I~L~d~-----p~~i~~Ki~~ 263 (364)
T 2cya_A 239 MSKSKPETAVFVVDS-----DDDIRRKIRK 263 (364)
T ss_dssp CCSSSGGGSCBTTCC-----HHHHHHHHHT
T ss_pred cCCCCCCCEeeccCC-----HHHHHHHHHh
Confidence 9999 7999988653 6666666654
No 65
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=21.77 E-value=17 Score=28.75 Aligned_cols=41 Identities=24% Similarity=0.588 Sum_probs=31.4
Q ss_pred ccChhHHHHhcChhH--------------HHHHHhccCcccCCCCCCHHHHHHHHH
Q 039609 8 TLEPNELVHNFGSDA--------------VRYFFLKEVEFGNDGDYSEDRFIKIVN 49 (248)
Q Consensus 8 vi~p~dli~~yg~D~--------------lR~~ll~~~~~~~d~~fs~~~l~~~~n 49 (248)
+.+|+.++.+||.+. .||+++=..|.+.+ .+|++.+...+.
T Consensus 138 VrePR~vL~EfG~~lP~~v~VrV~dstae~rYlVLP~rPagte-~lseeqLa~lvt 192 (207)
T 3a8g_A 138 VREPRKVLSEMGTEIASDIEIRVYDTTAETRYMVLPQRPAGTE-GWSQEQLQEIVT 192 (207)
T ss_dssp TTCHHHHHHHHTCCCCTTSEEEEEECCSSEEEEEECCCCTTCT-TCCHHHHHHHCC
T ss_pred HHCHHHHHHHhCCCCCCCeEEEEEeCCCCeEEEEecCCCCCCC-CCCHHHHHHHhc
Confidence 568999999998433 78998876777655 799998876543
No 66
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=21.57 E-value=17 Score=31.68 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=17.7
Q ss_pred CCCCc-CCccChhHHHHhcChhHHHHHHhc
Q 039609 1 MGKSL-GNTLEPNELVHNFGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~-GNvi~p~dli~~yg~D~lR~~ll~ 29 (248)
||||. +|.|+..|= ++.+|=.+++
T Consensus 252 MSKS~~~~~I~L~d~-----p~~i~~KI~~ 276 (375)
T 2cyc_A 252 MSKSKPYSAVFIHDS-----PEEIRQKLRK 276 (375)
T ss_dssp GGGSCGGGSCBTTCC-----HHHHHHHHHH
T ss_pred ccCCCCCCeeccCCC-----HHHHHHHHHH
Confidence 99998 888988653 5666666654
No 67
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=21.10 E-value=21 Score=30.59 Aligned_cols=13 Identities=38% Similarity=0.253 Sum_probs=10.8
Q ss_pred CCCCc---CCccChhH
Q 039609 1 MGKSL---GNTLEPNE 13 (248)
Q Consensus 1 MSKS~---GNvi~p~d 13 (248)
||||. ||.|...|
T Consensus 202 MSKS~~~~~~~I~L~D 217 (341)
T 3sz3_A 202 MSKSDDNRKNVITLLE 217 (341)
T ss_dssp CCTTCSCGGGCCBTTC
T ss_pred cCCCCCCCCCeeecCC
Confidence 99999 89997643
No 68
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=20.05 E-value=25 Score=21.26 Aligned_cols=20 Identities=15% Similarity=0.473 Sum_probs=9.9
Q ss_pred HHHHhhccHHHHHHHHHHHH
Q 039609 100 RGHYENLSLSSACEAVLDIS 119 (248)
Q Consensus 100 ~~~~e~~~~~~al~~i~~l~ 119 (248)
...++...|..|+..+.++-
T Consensus 33 ensfeQItfmqalQLlleve 52 (58)
T 1pd3_A 33 ENSFEQITFMQALQLLLEVE 52 (58)
T ss_dssp TTSHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHHHHHHH
Confidence 33444455555555555443
Done!