Query 039609
Match_columns 248
No_of_seqs 272 out of 2206
Neff 8.5
Searched_HMMs 13730
Date Mon Mar 25 19:39:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039609.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039609hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rqga1 a.27.1.1 (A:397-606) M 100.0 9.7E-34 7.1E-38 232.1 15.7 160 53-222 1-160 (210)
2 d1pfva1 a.27.1.1 (A:389-550) M 100.0 1.5E-31 1.1E-35 210.5 13.8 154 57-223 2-155 (162)
3 d2d5ba1 a.27.1.1 (A:349-500) M 100.0 3.3E-31 2.4E-35 206.3 11.3 150 52-213 1-151 (152)
4 d1ilea1 a.27.1.1 (A:642-821) I 99.7 1.5E-16 1.1E-20 125.9 11.4 126 52-181 1-131 (180)
5 d1ivsa2 a.27.1.1 (A:579-796) V 99.7 1.6E-16 1.2E-20 129.5 11.8 118 53-182 1-120 (218)
6 d1h3na1 a.27.1.1 (A:687-814) L 99.6 1.3E-15 9.6E-20 113.7 13.4 110 53-181 2-111 (128)
7 d1ffya1 a.27.1.1 (A:645-917) I 99.6 2.9E-15 2.1E-19 125.9 9.0 123 55-180 3-129 (273)
8 d1iq0a1 a.27.1.1 (A:467-592) A 94.3 0.51 3.7E-05 32.8 12.7 73 58-130 9-81 (126)
9 d1li5a1 a.27.1.1 (A:316-402) C 94.3 0.065 4.7E-06 35.1 6.5 34 95-128 23-57 (87)
10 d1f7ua1 a.27.1.1 (A:484-607) A 84.8 4.3 0.00031 27.6 12.2 48 83-130 39-86 (124)
11 d1f7ua2 c.26.1.1 (A:136-483) A 75.6 0.45 3.3E-05 39.0 1.5 24 1-24 273-296 (348)
12 d1j09a2 c.26.1.1 (A:1-305) Glu 64.7 3.8 0.00028 32.5 4.9 44 1-45 244-290 (305)
13 d1iq0a2 c.26.1.1 (A:97-466) Ar 60.3 1.4 0.0001 36.3 1.3 21 1-21 299-319 (370)
14 d1h3fa1 c.26.1.1 (A:5-347) Tyr 49.4 2.9 0.00021 33.8 1.6 24 1-29 229-252 (343)
15 d1jila_ c.26.1.1 (A:) Tyrosyl- 35.4 4.3 0.00031 32.6 0.4 13 1-13 231-243 (323)
16 d1j1ua_ c.26.1.1 (A:) Tyrosyl- 31.7 4.2 0.00031 32.2 -0.3 13 1-13 205-217 (306)
17 d1l8ya_ a.21.1.1 (A:) Nucleola 28.3 10 0.00075 23.2 1.2 14 165-178 4-17 (84)
18 d2qdya1 d.149.1.1 (A:10-206) I 26.3 6 0.00044 29.2 -0.2 41 8-49 129-183 (197)
No 1
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Probab=100.00 E-value=9.7e-34 Score=232.12 Aligned_cols=160 Identities=18% Similarity=0.368 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHhhHhhcCCcccCCCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCc
Q 039609 53 ANTIGNLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPW 132 (248)
Q Consensus 53 ~~~l~N~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW 132 (248)
+|++|||++|+++|+.++++|.+|........|.+++..++.+..++.++|++|+|++|++.+|++++.+|+|++..+||
T Consensus 1 vN~lGNl~~Rv~~~i~k~~~g~vp~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~~PW 80 (210)
T d1rqga1 1 VNNLGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRYFDHKQPW 80 (210)
T ss_dssp TTTHHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CccHHHHHHHHHHHHHHHCCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 37799999999999999999999977667788999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHhCCCcccccCCCccccccCCCCCCCccCCCCCccc
Q 039609 133 SRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFG 212 (248)
Q Consensus 133 ~l~k~~~~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~w~~~~~~~~~~~~~i~~~~~lf~ 212 (248)
++++++ .+++.+++++++++++.++++|+||||++|++||++||++.. ..| .|+.+++|+.+++|+|||+
T Consensus 81 ~l~k~~---~~~~~~vl~~~~~~~~~l~ilL~PfmP~~a~~i~~~Lg~~~~----~~~---~~~~~~~g~~i~~~~~LF~ 150 (210)
T d1rqga1 81 KTAKED---KVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDEV----KRW---EFRELPAGHKVRKPEILFK 150 (210)
T ss_dssp HHTTTC---HHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCCSC----CCS---SCCCCCTTCBCCCCCCSCC
T ss_pred hhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCcc----cch---hhhcCcccccCCCCccCcC
Confidence 998864 356778999999999999999999999999999999998652 123 3456788999999999999
Q ss_pred cCCccccccc
Q 039609 213 RIELKTGTED 222 (248)
Q Consensus 213 ki~~~~~~~~ 222 (248)
||+.+++...
T Consensus 151 rie~e~i~~~ 160 (210)
T d1rqga1 151 KVTDDQIIYF 160 (210)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9999876543
No 2
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}
Probab=99.97 E-value=1.5e-31 Score=210.50 Aligned_cols=154 Identities=21% Similarity=0.337 Sum_probs=135.6
Q ss_pred HHHHHHHHHhhHhhcCCcccCCCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCccccc
Q 039609 57 GNLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPWSRFK 136 (248)
Q Consensus 57 ~N~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW~l~k 136 (248)
-|+++|+++|+.++++|.+|.. ..|.++...+..+...+.++|++|+|++|++.+|++++.+|+|++..+||++.+
T Consensus 2 ~NL~~R~~~~i~k~~~g~vp~~----~~d~~l~~~~~~~~~~~~~~~~~~~~~~al~~i~~~~~~~Nkyi~~~~PWkl~k 77 (162)
T d1pfva1 2 VNLASRNAGFINKRFDGVLASE----LADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQAPWVVAK 77 (162)
T ss_dssp HHHHHHHHHHHHHHSTTBCCSS----CSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTT
T ss_pred cchHHHHHHHHHHhcCCcCCCC----CCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3899999999999999998853 357889999999999999999999999999999999999999999999999998
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHhCCCcccccCCCccccccCCCCCCCccCCCCCccccCCc
Q 039609 137 QGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIEL 216 (248)
Q Consensus 137 ~~~~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~w~~~~~~~~~~~~~i~~~~~lf~ki~~ 216 (248)
++.. .+++.++++.++++++.++++|+||||.+|++||++||.+ ..|.+.. ....|++++++.|||+|||.
T Consensus 78 ~~~~-~~~~~~vl~~~~~~lr~~~~lL~P~mP~~s~ki~~~L~~~------~~~~~~~--~~~~g~~i~~~~pLF~rie~ 148 (162)
T d1pfva1 78 QEGR-DADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE------LTWDGIQ--QPLLGHKVNPFKALYNRIDM 148 (162)
T ss_dssp STTC-HHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHTSC------CCTGGGG--SCCCSCBCCCCSCSSCCCCH
T ss_pred cchh-hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCC------CCHHHhh--cccCcCCCCCCCCCCCCCCH
Confidence 7543 3467789999999999999999999999999999999975 3576654 23459999999999999999
Q ss_pred ccccccc
Q 039609 217 KTGTEDG 223 (248)
Q Consensus 217 ~~~~~~~ 223 (248)
+.++++-
T Consensus 149 ~~ie~~~ 155 (162)
T d1pfva1 149 RQVEALV 155 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876553
No 3
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.97 E-value=3.3e-31 Score=206.35 Aligned_cols=150 Identities=25% Similarity=0.394 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHHhhHhhcCCcccCCCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCC
Q 039609 52 LANTIGNLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVP 131 (248)
Q Consensus 52 l~~~l~N~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kp 131 (248)
|+|++||+++|+++|+.++++|.+|....... ...+..+..++.++|++|+|++|++.+|++++.+|+|++..+|
T Consensus 1 LaN~lGNlv~R~~~~~~k~~~g~vP~~~~~~~-----~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~~~~N~yi~~~~P 75 (152)
T d2d5ba1 1 LADDLGNLVQRTRAMLFRFAEGRIPEPVAGEE-----LAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKP 75 (152)
T ss_dssp CCCCCHHHHHHHHHHHHHHSTTBCCCCCCCGG-----GGGGGGHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CcHHHHHHHHHHHHHHHHHCCCcCCCCcchHH-----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999986432221 3456678889999999999999999999999999999999999
Q ss_pred cccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHhCCCcccccCCCccc-cccCCCCCCCccCCCCCc
Q 039609 132 WSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGYSNEQFGNAAWSD-TKWGGLKGGQVMAQPKPV 210 (248)
Q Consensus 132 W~l~k~~~~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~w~~-~~~~~~~~~~~i~~~~~l 210 (248)
|++.|++ .+++.++++.+++++|.++++|+||||++|++||++||++.. ..|.+ ..|+.+.+|+.+.++.||
T Consensus 76 W~l~k~d---~~~~~~vl~~~l~~lr~l~ilL~P~mP~~~~ki~~~Lg~~~~----~~~~~~~~~~~~~~~~~~~~~~~L 148 (152)
T d2d5ba1 76 WELFKKE---PEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKEE----VRLEEAERWGLAEPRPIPEEAPVL 148 (152)
T ss_dssp HHHHHHC---HHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCCSS----CCGGGGGSSCCSCCCBCCSCCCCS
T ss_pred HHhhccc---hHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCCcc----CCHHHHHhcCCCCCCCCCCCCCCC
Confidence 9998864 346778899999999999999999999999999999999753 23433 457777889989999999
Q ss_pred ccc
Q 039609 211 FGR 213 (248)
Q Consensus 211 f~k 213 (248)
|+|
T Consensus 149 F~r 151 (152)
T d2d5ba1 149 FPK 151 (152)
T ss_dssp SCC
T ss_pred CCC
Confidence 998
No 4
>d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.67 E-value=1.5e-16 Score=125.88 Aligned_cols=126 Identities=14% Similarity=0.146 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHhhHh-hcC--CcccCCCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--HHHhHHh
Q 039609 52 LANTIGNLLNRTLGLLKK-NCQ--STLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDIS--NAGNSYM 126 (248)
Q Consensus 52 l~~~l~N~~~r~~~~~~~-~~~--~~~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~--~~~n~yl 126 (248)
+++++||..+++...... .++ ...+ .......|+|++++++++++++.++|++|+|++|+..++.|+ +.|+.|+
T Consensus 1 F~~klWN~~rF~~~~~~~~~~~~~~~~~-~~~l~~~D~wil~~l~~~~~~v~~~~~~~~f~~a~~~l~~f~~~~l~~~Y~ 79 (180)
T d1ilea1 1 YFLTLWNVYSFFVTYANLDRPDLKNPPP-PEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYV 79 (180)
T ss_dssp THHHHHHHHHHHHHHHHHHCCCTTSCCC-STTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTH
T ss_pred CCcHHHHHHHHHHHhccccCCCccCCCC-hhhCCHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHhhhhHHHH
Confidence 368899998887643321 111 1122 223556899999999999999999999999999999999986 6899999
Q ss_pred hhcCCcccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHhCCC
Q 039609 127 DEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGYS 181 (248)
Q Consensus 127 ~~~kpW~l~k~~~~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~ 181 (248)
+..|+ +++..++.. ....+..++..+++.++.+|+|||||+||+||+.|+..
T Consensus 80 e~~K~-~l~~~~~~~--~~~~~~~~l~~il~~~l~llaP~~PfitEEiw~~l~~~ 131 (180)
T d1ilea1 80 RRNRR-RFWKNEDAL--DREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRS 131 (180)
T ss_dssp HHHHH-HHHTCTTTS--STTHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTT
T ss_pred Hhccc-hhhhhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 98887 233222111 11223446666778889999999999999999999764
No 5
>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.67 E-value=1.6e-16 Score=129.50 Aligned_cols=118 Identities=21% Similarity=0.280 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHhhHhhcCCcccCCCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--HHHhHHhhhcC
Q 039609 53 ANTIGNLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDIS--NAGNSYMDEHV 130 (248)
Q Consensus 53 ~~~l~N~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~--~~~n~yl~~~k 130 (248)
+|++||..+++.... ++..+........|+|++.++++++.+++++|++|+|+.|++.+++|+ ..|++|++..+
T Consensus 1 aNKlwNa~rF~~~~~----~~~~~~~~~~~~~Dkwil~~l~~~i~~v~~~~~~y~f~~a~~~l~~F~~~~l~d~Y~e~~k 76 (218)
T d1ivsa2 1 ANKLYNAARFVLLSR----EGFQAKEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAK 76 (218)
T ss_dssp HHHHHHHHHHHHHHS----SSCCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTTTHHHHHH
T ss_pred ChHHHHHHHHHHhCc----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhHHHHHHHHh
Confidence 489999988875432 222222223456799999999999999999999999999999999997 68999999887
Q ss_pred CcccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHhCCCc
Q 039609 131 PWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGYSN 182 (248)
Q Consensus 131 pW~l~k~~~~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~~ 182 (248)
+. ...+.. . +..++..+++.+.+||+|||||+||+||+.|+..+
T Consensus 77 ~~--~~~~~~---~---~~~~l~~~l~~~l~ll~P~~PfitEeiw~~l~~~~ 120 (218)
T d1ivsa2 77 PA--LKAGNA---H---TLRTLEEVLAVLLKLLHPMMPFLTSELYQALTGKE 120 (218)
T ss_dssp HH--HHTTBH---H---HHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHCCS
T ss_pred hh--cccccc---c---ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 62 222221 1 23345566778899999999999999999997644
No 6
>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.65 E-value=1.3e-15 Score=113.69 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHhhHhhcCCcccCCCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcCCc
Q 039609 53 ANTIGNLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHVPW 132 (248)
Q Consensus 53 ~~~l~N~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~kpW 132 (248)
.++++|++.......... ....+ .......|+|+...+++++.+++++|++|+|+.|+..+++|.+..+.|......+
T Consensus 2 lnklw~~v~~~~~~~~~~-~~~~~-~~~~~~~dk~~~~~l~~~i~~v~~~~e~~~fn~ai~~l~~f~n~l~~~~~~~~~~ 79 (128)
T d1h3na1 2 LNRIYRRVAEDREALLET-SGVFQ-AEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDRPVT 79 (128)
T ss_dssp HHHHHHHHHHHHHHHHTC-CCCCC-GGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred cHHHHHHHHHHHhhcccc-ccccC-cccCCHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcccchhhhhhhhH
Confidence 467787766554433221 11111 2234567999999999999999999999999999999999997777765543221
Q ss_pred ccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHhCCC
Q 039609 133 SRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGYS 181 (248)
Q Consensus 133 ~l~k~~~~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~ 181 (248)
.+..++++.+++||+|||||+||+||+.||.+
T Consensus 80 -----------------~~~~~~l~~ll~ll~P~~P~itEeiw~~l~~~ 111 (128)
T d1h3na1 80 -----------------PVYRTAIRYYLQMLFPFAPHLAEELWHWFWPD 111 (128)
T ss_dssp -----------------HHHHHHHHHHHHHHTTTSHHHHHHHHTTTCSS
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 12345667789999999999999999999854
No 7
>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=99.56 E-value=2.9e-15 Score=125.89 Aligned_cols=123 Identities=12% Similarity=0.161 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhhHhhcCC--cccCCCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--HHHhHHhhhcC
Q 039609 55 TIGNLLNRTLGLLKKNCQS--TLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDIS--NAGNSYMDEHV 130 (248)
Q Consensus 55 ~l~N~~~r~~~~~~~~~~~--~~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~--~~~n~yl~~~k 130 (248)
+++|.++++++.+.++... .++. ......|+|++.+++.+..++.++|++|+|++|++.+++|+ .++++|++..|
T Consensus 3 KirNt~RFlL~nl~~f~~~~~~~~~-~~l~~lD~wiL~~l~~~~~~v~~~y~~y~f~~~~~~l~~F~~~~ls~~Y~~~~K 81 (273)
T d1ffya1 3 KIRNTLRFMLGNINDFNPDTDSIPE-SELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGK 81 (273)
T ss_dssp HHHHHHHHHHHTSTTCCHHHHCCCG-GGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_pred hHHHHHHHHHHhccCCCcccccCCh-hhCCHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHhhhhccchHHHHhhcc
Confidence 6788888887766543211 2332 23567899999999999999999999999999999999998 48999999999
Q ss_pred CcccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHhCC
Q 039609 131 PWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGY 180 (248)
Q Consensus 131 pW~l~k~~~~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~ae~i~~~Lg~ 180 (248)
+ +++.++.++..+ ..+..++.+++..+.++|+|||||++|+||+.+..
T Consensus 82 d-rly~~~~ds~~r-~~~~~~l~~il~~l~~~laPilPf~~Eei~~~~~~ 129 (273)
T d1ffya1 82 D-ILYIEQRDSHIR-RSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPH 129 (273)
T ss_dssp H-HHTTSCTTCHHH-HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTT
T ss_pred c-cccCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8 455554333332 33455667778889999999999999999998854
No 8
>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}
Probab=94.32 E-value=0.51 Score=32.82 Aligned_cols=73 Identities=15% Similarity=0.083 Sum_probs=53.0
Q ss_pred HHHHHHHHhhHhhcCCcccCCCcCchhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcC
Q 039609 58 NLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHV 130 (248)
Q Consensus 58 N~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~k 130 (248)
...-|+.+.+.+......+......+.+..++..+..+..-+..+.+++++|..+..+.++++..|.|.+..+
T Consensus 9 Ya~AR~~SIl~k~~~~~~~~~~~~~~~E~~Li~~l~~~p~vl~~a~~~~~Ph~l~~yl~~La~~F~~fY~~~~ 81 (126)
T d1iq0a1 9 YAHARAHSILRKAGEWGAPDLSQATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYNARE 81 (126)
T ss_dssp HHHHHHHHHHHHHCCCCCCCGGGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHhccccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456777766654332233222334556778888888888899999999999999999999999999987543
No 9
>d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}
Probab=94.30 E-value=0.065 Score=35.14 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=29.6
Q ss_pred HHHHHHHHHh-hccHHHHHHHHHHHHHHHhHHhhh
Q 039609 95 LVETARGHYE-NLSLSSACEAVLDISNAGNSYMDE 128 (248)
Q Consensus 95 ~~~~~~~~~e-~~~~~~al~~i~~l~~~~n~yl~~ 128 (248)
+..++.++|+ +||++.|+..++++++.+|+++..
T Consensus 23 ~~~~F~~Am~DDlNTp~Ala~lfel~k~~N~~~~~ 57 (87)
T d1li5a1 23 FEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAE 57 (87)
T ss_dssp HHHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHhcC
Confidence 4567888896 999999999999999999988763
No 10
>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=84.78 E-value=4.3 Score=27.60 Aligned_cols=48 Identities=6% Similarity=0.067 Sum_probs=41.1
Q ss_pred hhcHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhHHhhhcC
Q 039609 83 AEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISNAGNSYMDEHV 130 (248)
Q Consensus 83 ~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~n~yl~~~k 130 (248)
+.+..++..+..+...+..+.++++++..+..+.++++..|.|.+..+
T Consensus 39 ~~e~~Li~~l~~~p~vl~~a~~~~~Ph~l~~yl~~La~~F~~fY~~~~ 86 (124)
T d1f7ua1 39 PAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCYDVLW 86 (124)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445667778888888888999999999999999999999999988754
No 11
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=75.63 E-value=0.45 Score=39.03 Aligned_cols=24 Identities=8% Similarity=0.131 Sum_probs=20.1
Q ss_pred CCCCcCCccChhHHHHhcChhHHH
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVR 24 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR 24 (248)
|||++||+|++.|++++-...+.+
T Consensus 273 MStR~G~~i~l~dll~e~~~~a~~ 296 (348)
T d1f7ua2 273 MSTRKGTVVFLDNILEETKEKMHE 296 (348)
T ss_dssp CCGGGTCCCBHHHHHHHHHHHHHH
T ss_pred ccccCCCceEHHHHHHHHHHHHHH
Confidence 999999999999999997444433
No 12
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}
Probab=64.74 E-value=3.8 Score=32.48 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=31.2
Q ss_pred CCCCcCCccChhHHHHh-cChhHHHHHHhccCc--ccCCCCCCHHHHH
Q 039609 1 MGKSLGNTLEPNELVHN-FGSDAVRYFFLKEVE--FGNDGDYSEDRFI 45 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~-yg~D~lR~~ll~~~~--~~~d~~fs~~~l~ 45 (248)
||||.|. .++.++.++ |.++++|-||+..+. ......+|.+.+.
T Consensus 244 LSKr~~~-~tl~~lr~~G~~peai~~~l~~lG~~~~~~~~~~sl~e~i 290 (305)
T d1j09a2 244 ISKRKSH-TSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFI 290 (305)
T ss_dssp CCTTTSC-CBHHHHHHTTCCHHHHHHHHHHHSCCCTTCCSCCCHHHHH
T ss_pred ccccCCc-cCHHHHHHcCCCHHHHHHHHHHhCCCCCCCcCcCCHHHHH
Confidence 8999886 588888876 999999999886432 2222346766553
No 13
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}
Probab=60.29 E-value=1.4 Score=36.26 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=14.4
Q ss_pred CCCCcCCccChhHHHHhcChh
Q 039609 1 MGKSLGNTLEPNELVHNFGSD 21 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D 21 (248)
|||..||+|+..|+|++-...
T Consensus 299 MStR~G~~v~l~dll~ea~~~ 319 (370)
T d1iq0a2 299 MSGRKGLAVSVDEVLEEATRR 319 (370)
T ss_dssp SCC----CCBHHHHHHHHHHH
T ss_pred ccccCCCeeEHHHHHHHHHHH
Confidence 999999999999999985433
No 14
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]}
Probab=49.36 E-value=2.9 Score=33.84 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=19.0
Q ss_pred CCCCcCCccChhHHHHhcChhHHHHHHhc
Q 039609 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLK 29 (248)
Q Consensus 1 MSKS~GNvi~p~dli~~yg~D~lR~~ll~ 29 (248)
||||.||.|+..| .++.++=++++
T Consensus 229 MSKS~~naI~L~d-----sp~~i~~Ki~~ 252 (343)
T d1h3fa1 229 MSKSLDNYIGLTE-----PPEAMFKKLMR 252 (343)
T ss_dssp CCGGGTCCCBTTS-----CHHHHHHHHHT
T ss_pred hhcccccceeeec-----hhHHHHHHHhc
Confidence 9999999999875 67777666665
No 15
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=35.42 E-value=4.3 Score=32.65 Aligned_cols=13 Identities=23% Similarity=0.248 Sum_probs=11.5
Q ss_pred CCCCcCCccChhH
Q 039609 1 MGKSLGNTLEPNE 13 (248)
Q Consensus 1 MSKS~GNvi~p~d 13 (248)
||||.||.|+..+
T Consensus 231 m~KS~~n~i~l~~ 243 (323)
T d1jila_ 231 FGKSESGAVWLDA 243 (323)
T ss_dssp TTBCSSSBCBSST
T ss_pred hhhcCCCCeeeec
Confidence 8999999998754
No 16
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=31.71 E-value=4.2 Score=32.22 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=5.5
Q ss_pred CCCCcCCccChhH
Q 039609 1 MGKSLGNTLEPNE 13 (248)
Q Consensus 1 MSKS~GNvi~p~d 13 (248)
||||.||.|+..|
T Consensus 205 MSKS~~n~I~L~D 217 (306)
T d1j1ua_ 205 MSSSKGNFIAVDD 217 (306)
T ss_dssp ------CSCBTTC
T ss_pred cccccccccccCC
Confidence 9999999998754
No 17
>d1l8ya_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.26 E-value=10 Score=23.17 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=12.1
Q ss_pred ccccHHHHHHHHHh
Q 039609 165 PVTPNLCWRIYEQL 178 (248)
Q Consensus 165 P~~P~~ae~i~~~L 178 (248)
|=.|.++++||++-
T Consensus 4 petpktaeeiWQqs 17 (84)
T d1l8ya_ 4 PESPKRAEEIWQQS 17 (84)
T ss_dssp CCCCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 67899999999974
No 18
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=26.30 E-value=6 Score=29.21 Aligned_cols=41 Identities=24% Similarity=0.588 Sum_probs=31.4
Q ss_pred ccChhHHHHhcChhH--------------HHHHHhccCcccCCCCCCHHHHHHHHH
Q 039609 8 TLEPNELVHNFGSDA--------------VRYFFLKEVEFGNDGDYSEDRFIKIVN 49 (248)
Q Consensus 8 vi~p~dli~~yg~D~--------------lR~~ll~~~~~~~d~~fs~~~l~~~~n 49 (248)
+.+|..++.+||.+. +||+++=..|.+.+ .+|++.|...+.
T Consensus 129 V~ePR~VL~EfG~~lP~~v~VrV~dsta~~rylVLP~rP~gte-~lse~~La~lvt 183 (197)
T d2qdya1 129 VREPRKVLSEMGTEIASDIEIRVYDTTAETRYMVLPQRPAGTE-GWSQEQLQEIVT 183 (197)
T ss_dssp TTCHHHHHHHHTCCCCTTSEEEEEECCSSCEEEEECCCCTTCT-TCCHHHHHHHCC
T ss_pred HhhHHHHHHHcCCcCCCCcEEEEEeCCCCeEEEEecCCCCCCC-CCCHHHHHHHhc
Confidence 678999999998654 89999876666544 799998876543
Done!