RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 039609
(248 letters)
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 245 bits (627), Expect = 1e-78
Identities = 65/217 (29%), Positives = 103/217 (47%), Gaps = 6/217 (2%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
M KS+GN ++P ELV +G D +RYF ++EV FG DG YS + + NA LAN +GNL
Sbjct: 322 MSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLA 381
Query: 61 NRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISN 120
R+L ++ KNC+ + A + A D + +ETAR ++ +L A A+ +
Sbjct: 382 QRSLSMIAKNCEGKVPQPGAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVVA 441
Query: 121 AGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGY 180
N Y PW+ K L + E +R + + + P P ++ + L
Sbjct: 442 EANRYFAGQEPWALRKTD---PARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAV 498
Query: 181 SNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIELK 217
++ ++D L GG + P+PVF R
Sbjct: 499 PADKRQ---FADVLASPLAGGTDLPAPQPVFPRYVEA 532
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 242 bits (621), Expect = 8e-78
Identities = 73/217 (33%), Positives = 107/217 (49%), Gaps = 5/217 (2%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
M KS+GN ++P LV FG D VRYF L+EV FG DG Y+ED I VNA LAN +GNL
Sbjct: 311 MSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLA 370
Query: 61 NRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISN 120
R+L ++ KN + + E TA + L+E R H++ ++ A EA+ +
Sbjct: 371 QRSLSMVAKNLGAAVPDPGEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLG 430
Query: 121 AGNSYMDEHVPWSRFKQGGAASEAAAKD-LVIILEAMRIIAVALSPVTPNLCWRIYEQLG 179
A N Y PW K A + + L LE +RI ++ L PV P ++ + LG
Sbjct: 431 AANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLG 490
Query: 180 YSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIEL 216
++ +A +K G + P +F R +
Sbjct: 491 QPTDERDFSAI----ANRIKPGTSLPAPSGIFPRYQN 523
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation, ATP-binding;
HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 238 bits (610), Expect = 8e-76
Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 11/233 (4%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
+ KSLGN +P E FG DA++YF ++E F +DGDYS+ + +N LA+T+GNL+
Sbjct: 340 ISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLV 399
Query: 61 NRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISN 120
+R + K N + + ++ L T +Y + A A+ D+
Sbjct: 400 SRCVA-PKINVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLR 458
Query: 121 AGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGY 180
+ N+Y+ E+ PW K + L + +E +RI + L PV P I + LG
Sbjct: 459 SLNAYVTENAPWKLVKMD---TARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGV 515
Query: 181 SNEQFGNAAWSDTKWGGLKGG---QVMAQPKPVFGRIELKTGTEDGGEPAAAK 230
+ +G +K G +A+ + VF ++ L TE+G + +
Sbjct: 516 PEAARVG--MENYLFGIVKPGTKIAGLAEGQVVFQKVTLP--TEEGERSSKGQ 564
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
2d54_A
Length = 500
Score = 228 bits (583), Expect = 2e-72
Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 11/213 (5%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
M K+LGN ++P L+ +G DA+RY+ L+E+ +G D SE+ A LA+ +GNL+
Sbjct: 298 MSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLV 357
Query: 61 NRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISN 120
RT +L + + + L R L A E +
Sbjct: 358 QRTRAMLFRFAEGRI-----PEPVAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVK 412
Query: 121 AGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGY 180
A N Y++E PW FK+ E A L ++E +RI ++ L+P P+ + LG
Sbjct: 413 ALNRYINEKKPWELFKKE---PEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGL 469
Query: 181 SNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGR 213
E +WG + + + +F +
Sbjct: 470 KEEV---RLEEAERWGLAEPRPIPEEAPVLFPK 499
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 226 bits (578), Expect = 1e-71
Identities = 60/215 (27%), Positives = 101/215 (46%), Gaps = 14/215 (6%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
M K+LGN ++P E+V +G D VRYF L+EV FG DGD+S+ + +N LAN IGNL
Sbjct: 296 MSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLY 355
Query: 61 NRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISN 120
+R + + K + A + ++ ++ + E ++ A E +L ++
Sbjct: 356 SRVVNMAHKFLGGEV-----SGARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFTS 410
Query: 121 AGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGY 180
N Y+DE PW+ K+ E K L +++ + ++ L P+TPN + LG
Sbjct: 411 YLNKYVDEKQPWALNKERKK--EELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGE 468
Query: 181 SNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIE 215
+S K + + K +F + E
Sbjct: 469 KEFLKELKPYS-------KNTYKLGERKILFPKRE 496
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 212 bits (540), Expect = 9e-66
Identities = 64/220 (29%), Positives = 101/220 (45%), Gaps = 9/220 (4%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
+ KSLGN +P E FG DA++YF L+E F +DGDYS+ I +N LA+T+GNL+
Sbjct: 324 ISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLV 383
Query: 61 NRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISN 120
R K N +A E + ++ L TA +Y + A AV D+
Sbjct: 384 MRCTS-AKINVNGEWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLR 442
Query: 121 AGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGY 180
A N+Y+ + PW K E L I LE +R+ + LSP+ P I++ LG
Sbjct: 443 AINAYVTDMAPWKLVKTD---PERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGV 499
Query: 181 SNEQFGNAAWSDTKWGGLKGGQVMA---QPKPVFGRIELK 217
+ ++G + G + + + +F + +
Sbjct: 500 PEVHR--KGIENFEFGAVPPGTRLGPAVEGEVLFSKRSTE 537
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 152 bits (386), Expect = 1e-42
Identities = 47/254 (18%), Positives = 93/254 (36%), Gaps = 16/254 (6%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
S + +E + F +D +RY+ + D D+S F +N L N +GN +
Sbjct: 345 FSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFV 404
Query: 61 NRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDISN 120
+R L + + + + + +EK + N A + V+ +++
Sbjct: 405 HRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLAS 464
Query: 121 AGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLGY 180
GN Y D PW K+ + I L+ ++ + + L P P+ +I+ L
Sbjct: 465 FGNRYFDHKQPWKTAKED---KVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNL 521
Query: 181 SNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIE------LKTGTEDGGEPAAAKQVAK 234
+ + L G + +P+ +F ++ G P A+ +
Sbjct: 522 D-----EVKRWE--FRELPAGHKVRKPEILFKKVTDDQIIYFILNYMAKGNPEGARILLD 574
Query: 235 KKEKKAKAQAVAEA 248
K K+ VA+
Sbjct: 575 KYYKREDVIRVAKE 588
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 125 bits (316), Expect = 2e-33
Identities = 49/218 (22%), Positives = 90/218 (41%), Gaps = 14/218 (6%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGN-DGDYSEDRFIKIVNAHLANTIGNL 59
M KS G ++ + +++F +D++RY++ ++ D D + + F++ VNA + N + NL
Sbjct: 346 MSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNL 405
Query: 60 LNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLDIS 119
+R G + K L A T E +E+ A ++ ++
Sbjct: 406 ASRNAGFINKRFDGVL----ASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALA 461
Query: 120 NAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLG 179
+ N Y+DE PW KQ G ++ A + + R++ L PV P L R L
Sbjct: 462 DLANRYVDEQAPWVVAKQEGRDADLQAI-CSMGINLFRVLMTYLKPVLPKLTERAEAFLN 520
Query: 180 YSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIELK 217
W G + K ++ RI+++
Sbjct: 521 T------ELTWDGI--QQPLLGHKVNPFKALYNRIDMR 550
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 76.9 bits (189), Expect = 2e-16
Identities = 29/180 (16%), Positives = 62/180 (34%), Gaps = 21/180 (11%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
M KS GN L + + G+D VR + + E +D D+ + +
Sbjct: 651 MSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKE---------VGKLRKQI 701
Query: 61 NRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVL-DIS 119
R L+ + + + + + + K ++ E +A + I
Sbjct: 702 ERFYELISQFAEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIM 761
Query: 120 NAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLG 179
N Y+ + A + + + + ++P TP++C ++E+LG
Sbjct: 762 NDLRWYLRR---------TEGRDDEAKRYV--LRTLADVWVRLMAPFTPHICEELWEKLG 810
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 76.5 bits (188), Expect = 4e-16
Identities = 29/182 (15%), Positives = 62/182 (34%), Gaps = 21/182 (11%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGNLL 60
M KS GN L + + G+D VR + + E +D D+ + +
Sbjct: 651 MSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKE---------VGKLRKQI 701
Query: 61 NRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVL-DIS 119
R L+ + + + + + + K ++ E +A + I
Sbjct: 702 ERFYELISQFAEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIM 761
Query: 120 NAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQLG 179
N Y+ + A + + + + ++P TP++C ++E+LG
Sbjct: 762 NDLRWYLRR---------TEGRDDEAKRYV--LRTLADVWVRLMAPFTPHICEELWEKLG 810
Query: 180 YS 181
Sbjct: 811 GE 812
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 52.9 bits (128), Expect = 3e-08
Identities = 37/203 (18%), Positives = 67/203 (33%), Gaps = 50/203 (24%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSED-RF-IKIVNAHLANTIGN 58
M KS GN ++P +++ FG+DA+R++ D RF +V + +
Sbjct: 592 MSKSKGNVVDPWDIIRKFGADALRWYIY------VSAPPEADRRFGPNLVRETVRDYFLT 645
Query: 59 LLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDT----------VEKLVETARGHYENLSL 108
L N +D + ++ L++ E
Sbjct: 646 LWN-VYSFFVTY----ANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDP 700
Query: 109 SSACEAVL-----DISNAGNSYMDEHVPW------SRFKQGGAASE--AAAKDLVIILEA 155
+++ A+ D+S W RF + A + AA L L
Sbjct: 701 TTSARALRDFVVEDLSQ-----------WYVRRNRRRFWKNEDALDREAAYATLYEALVL 749
Query: 156 MRIIAVALSPVTPNLCWRIYEQL 178
+ A +P TP L +++ L
Sbjct: 750 V---ATLAAPFTPFLAEVLWQNL 769
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 51.0 bits (123), Expect = 1e-07
Identities = 38/200 (19%), Positives = 73/200 (36%), Gaps = 42/200 (21%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFL------KEVEFGNDGDYSEDRFIKIVNAHLAN 54
M KS N ++P +V +G+D VR F + +E+ G +RF
Sbjct: 640 MSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRF---------- 689
Query: 55 TIGNLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARG---HYE-NLSLSS 110
L R L+ ++ V V A K + +T + ++
Sbjct: 690 -----LKRVWKLVYEHTAKGDVAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNT 744
Query: 111 ACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNL 170
A A++++ N + +D ++ EA+ + L+P TP++
Sbjct: 745 AIAAIMELMNKLAKAPTD----------------GEQDRALMQEALLAVVRMLNPFTPHI 788
Query: 171 CWRIYEQLGYSNEQFGNAAW 190
C+ ++++L NA W
Sbjct: 789 CFTLWQELKGE-GDIDNAPW 807
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 49.9 bits (120), Expect = 3e-07
Identities = 32/200 (16%), Positives = 58/200 (29%), Gaps = 43/200 (21%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFL------KEVEFGNDGDYSEDRFIK----IVNA 50
M KS GN + V G+D R L E+ + +G RF+ V
Sbjct: 638 MSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAE 697
Query: 51 HLANTIGNLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSS 110
+ S + A+ + + + ++ E L ++
Sbjct: 698 DREALLE--------------TSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNT 743
Query: 111 ACEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNL 170
A A+++ NA Y + + A+R L P P+L
Sbjct: 744 AIAALMEFLNALYEYRKD-----------RPVTPVYR------TAIRYYLQMLFPFAPHL 786
Query: 171 CWRIYEQLGYSNEQFGNAAW 190
++ + A W
Sbjct: 787 AEELWHWFW--PDSLFEAGW 804
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 49.1 bits (118), Expect = 6e-07
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDR------FI-KIVNA 50
M KS GN ++P E+V +G+DA+R+ + G D F K+ NA
Sbjct: 529 MSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNA 585
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 1e-06
Identities = 30/208 (14%), Positives = 59/208 (28%), Gaps = 48/208 (23%)
Query: 4 SLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHLANTIGN----- 58
+L N P ++ + Y +D + I + A L + +
Sbjct: 188 NLKNCNSPETVLEML--QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 59 -LL-------NRTLGLLKKNCQSTLVV--DSAVAAEGTAFKDTVEKLVETARG--HYENL 106
LL + +C+ L+ V +A T L + E
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCK-ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 107 SLSSAC----------EAV----LDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVII 152
SL E + +S S D W +K +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH-------------VN 351
Query: 153 LEAM-RIIAVALSPVTPNLCWRIYEQLG 179
+ + II +L+ + P +++++L
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Score = 31.7 bits (71), Expect = 0.25
Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 23/83 (27%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVE--------FGNDGDYSEDRFIKIVNAHL 52
+ SL N LEP E F +V F D S+ +VN
Sbjct: 359 IESSL-NVLEPAEYRKMFDRLSV---FPPSAHIPTILLSLIWFDVIKSDVM--VVVN--- 409
Query: 53 ANTIGNLLNRTLGLLKKNCQSTL 75
L +L + K+ +ST+
Sbjct: 410 -----KLHKYSL-VEKQPKESTI 426
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.023
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 7/30 (23%)
Query: 67 LKKNCQSTLVV---DSAVAAEGTAFKDTVE 93
LKK Q++L + DSA A A K T+E
Sbjct: 22 LKK-LQASLKLYADDSAPA---LAIKATME 47
Score = 26.8 bits (58), Expect = 4.2
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 6/23 (26%)
Query: 230 KQVAKKKEKKAK------AQAVA 246
KQ KK + K A A+A
Sbjct: 19 KQALKKLQASLKLYADDSAPALA 41
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 34.4 bits (80), Expect = 0.035
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVR 24
M KSLGN + P+++V G+D R
Sbjct: 596 MSKSLGNVIVPDQVVKQKGADIAR 619
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.059
Identities = 49/314 (15%), Positives = 85/314 (27%), Gaps = 126/314 (40%)
Query: 10 EPN---ELVHNF-GSDAVRYFFLKEVEFGNDGDYS----------EDRFIKIVNAH-LAN 54
EP ELV F G + VE G + E+ +++ + H LA
Sbjct: 53 EPTTPAELVGKFLG------YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 55 TIGNLLNRTLGLLKKNCQS------------TLVVDSAV---AAEGTA------------ 87
+ + TL K+ ++ +SA+ EG A
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 88 ---FK------DT----VEKLVETARGHYENLSLSSA-----CEAVLDI--------SNA 121
F+ T V L++ + L ++ L+I +
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 122 GNSYMDEHVPWS----------RF----KQGG----------AASEAAAKDLVIILEAMR 157
Y+ +P S + K G + ++ LV
Sbjct: 227 DKDYLL-SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV----TAV 281
Query: 158 IIAVALSPVTPNLCWRIYEQLGYSNEQFGNAAWSDTK---WGGLKGGQVMAQPKPVFGRI 214
IA S W E F + + G++ + A P
Sbjct: 282 AIAETDS-------W----------ESFFVSVRKAITVLFFIGVRCYE--AYPNTSLPPS 322
Query: 215 ELKTGTEDG-GEPA 227
L+ E+ G P+
Sbjct: 323 ILEDSLENNEGVPS 336
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A
{Coxiella burnetii}
Length = 462
Score = 32.9 bits (76), Expect = 0.076
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFL 28
M KSLGN + E + + +RYF L
Sbjct: 270 MSKSLGNIISIREALKESDVEVLRYFLL 297
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 32.9 bits (76), Expect = 0.077
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFL 28
M KSLGN +++ + ++ VRYF +
Sbjct: 267 MSKSLGNFFTVRDVLKYYDAETVRYFLM 294
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 31.8 bits (73), Expect = 0.18
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 1 MGKSLGNTLEPNELV-HNFGSDAVRYFFL 28
M KS GN + +L NF RY L
Sbjct: 300 MSKSRGNFITVKDLEDQNFSPLDFRYLCL 328
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc
genomics, protein structure initiative; 2.20A
{Campylobacter jejuni}
Length = 464
Score = 31.0 bits (71), Expect = 0.30
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFL 28
M K GN + +++V GSDA+RY FL
Sbjct: 286 MSKRAGNFILMSDVVDEIGSDALRYIFL 313
>1tbu_A Peroxisomal acyl-coenzyme A thioester hydrolase 1; yeast
peroxisomal thioesterase, , domain swapping, iodine
SOAK, siras; 2.20A {Saccharomyces cerevisiae} SCOP:
d.38.1.3
Length = 118
Score = 27.0 bits (60), Expect = 2.9
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 187 NAAWSDTKWGGLKGGQVMAQ 206
+ G GG +++Q
Sbjct: 29 YLPAAPVGSKGTFGGTLVSQ 48
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 25.8 bits (57), Expect = 6.7
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 63 TLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGH 102
L +KK +D V A+ + K +EK H
Sbjct: 79 ALFFVKKEGNEIKTLDQFVGADVSRIKADIEKFKHHHHHH 118
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.1 bits (60), Expect = 6.8
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 33 FGNDGDYSE 41
FG DG YSE
Sbjct: 634 FGGDGMYSE 642
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 26.8 bits (60), Expect = 7.0
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 1 MGKSLGNTLEPNELVH-NFGSDAVRYFFL 28
M KS GN + ++L A+R
Sbjct: 292 MSKSRGNLVLVSQLRAQGVDPSAIRLGLF 320
>2zws_A Neutral ceramidase; prism fold and beta-sandwich fold, hydrolase,
lipid metaboli secreted; HET: PLM; 1.40A {Pseudomonas
aeruginosa} PDB: 2zxc_A*
Length = 646
Score = 26.8 bits (58), Expect = 8.8
Identities = 19/95 (20%), Positives = 33/95 (34%)
Query: 119 SNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQL 178
+NA SY+ ++ + G ++ + +AVAL P I L
Sbjct: 442 ANAYASYVTTREEYAAQEYEGGSTLYGPWTQAAYQQLFVDMAVALRERLPVETSAIAPDL 501
Query: 179 GYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGR 213
F +D + G G V+ QP+ +
Sbjct: 502 SCCQMNFQTGVVADDPYIGKSFGDVLQQPRESYRI 536
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.376
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,799,880
Number of extensions: 229971
Number of successful extensions: 477
Number of sequences better than 10.0: 1
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 37
Length of query: 248
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 157
Effective length of database: 4,160,982
Effective search space: 653274174
Effective search space used: 653274174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.3 bits)