RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 039609
(248 letters)
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 152
Score = 93.0 bits (230), Expect = 2e-24
Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 11/162 (6%)
Query: 52 LANTIGNLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSA 111
LA+ +GNL+ RT +L + + + VA E L R L A
Sbjct: 1 LADDLGNLVQRTRAMLFRFAEG--RIPEPVAGE---ELAEGTGLAGRLRPLVRELKFHVA 55
Query: 112 CEAVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLC 171
E + A N Y++E PW FK+ E A L ++E +RI ++ L+P P+
Sbjct: 56 LEEAMAYVKALNRYINEKKPWELFKKE---PEEARAVLYRVVEGLRIASILLTPAMPDKM 112
Query: 172 WRIYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGR 213
+ LG E +WG + + + +F +
Sbjct: 113 AELRRALGLKEEVR---LEEAERWGLAEPRPIPEEAPVLFPK 151
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS)
{Escherichia coli [TaxId: 562]}
Length = 162
Score = 85.9 bits (212), Expect = 1e-21
Identities = 36/181 (19%), Positives = 58/181 (32%), Gaps = 22/181 (12%)
Query: 58 NLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACEAVLD 117
NL +R G + K L A T E +E+ A ++
Sbjct: 3 NLASRNAGFINKRFDGVL----ASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMA 58
Query: 118 ISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWRIYEQ 177
+++ N Y+DE PW KQ G + + R++ L PV P L R
Sbjct: 59 LADLANRYVDEQAPWVVAKQEG-RDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAF 117
Query: 178 LGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIELKTGTEDGGEPAAAKQVAKKKE 237
L W + G + K ++ RI+++ V KE
Sbjct: 118 LNTELT------WDGIQQ--PLLGHKVNPFKALYNRIDMR---------QVEALVEASKE 160
Query: 238 K 238
+
Sbjct: 161 E 161
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS)
{Pyrococcus abyssi [TaxId: 29292]}
Length = 210
Score = 78.7 bits (193), Expect = 2e-18
Identities = 35/201 (17%), Positives = 72/201 (35%), Gaps = 16/201 (7%)
Query: 54 NTIGNLLNRTLGLLKKNCQSTLVVDSAVAAEGTAFKDTVEKLVETARGHYENLSLSSACE 113
N +GN ++R L + + + + + +EK + N A +
Sbjct: 2 NNLGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALK 61
Query: 114 AVLDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIILEAMRIIAVALSPVTPNLCWR 173
V+ +++ GN Y D PW K+ + I L+ ++ + + L P P+ +
Sbjct: 62 RVMSLASFGNRYFDHKQPWKTAKEDKVRTGTTV---NISLQIVKALGILLEPFLPDASEK 118
Query: 174 IYEQLGYSNEQFGNAAWSDTKWGGLKGGQVMAQPKPVFGRIE------LKTGTEDGGEPA 227
I+ L ++ L G + +P+ +F ++ G P
Sbjct: 119 IWHLLNLDEV-------KRWEFRELPAGHKVRKPEILFKKVTDDQIIYFILNYMAKGNPE 171
Query: 228 AAKQVAKKKEKKAKAQAVAEA 248
A+ + K K+ VA+
Sbjct: 172 GARILLDKYYKREDVIRVAKE 192
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 76.6 bits (187), Expect = 6e-17
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNAHL 52
S + +E + F +D +RY+ + D D+S F +N L
Sbjct: 310 FSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEEL 361
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 73.4 bits (179), Expect = 8e-16
Identities = 15/55 (27%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFG-NDGDYSEDRFIKIVNAHLAN 54
M KS G ++ + +++F +D++RY++ ++ +D D + + F++ VNA + N
Sbjct: 295 MSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVN 349
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 71.6 bits (174), Expect = 3e-15
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVNA 50
M K+LGN ++P L+ +G DA+RY+ L+E+ +G D SE+ A
Sbjct: 298 MSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEA 347
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 64.2 bits (155), Expect = 1e-12
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRF 44
M KS GN ++P E+V +G+DA+R+ + G D
Sbjct: 376 MSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWL 419
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 63.0 bits (152), Expect = 4e-12
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVN 49
M KS GN ++P +++ FG+DA+R++ D + + + V
Sbjct: 403 MSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVR 451
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 58.1 bits (139), Expect = 2e-10
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDRFIKIVN 49
M KSLGN + P+++V G+D R + ++ D S++ + +
Sbjct: 402 MSKSLGNVIVPDQVVKQKGADIARLWVS-STDYLADVRISDEILKQTSD 449
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 51.5 bits (122), Expect = 2e-08
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDR 43
M KS GN + V G+D R L N+ ++E+
Sbjct: 446 MSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEG 488
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 49.6 bits (117), Expect = 1e-07
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLKEVEFGNDGDYSEDR 43
M KSLGN +++ + ++ VRYF + + + +YSE+
Sbjct: 267 MSKSLGNFFTVRDVLKYYDAETVRYFLMS-GHYRSQLNYSEEN 308
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 42.8 bits (99), Expect = 1e-05
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 1 MGKSLGNTLEPNELVHNFGSDAVRYFFLK 29
M S GN + ++L VR+ + +
Sbjct: 278 MSGSKGNVILLSDLYEVLEPGLVRFIYAR 306
>d1okia1 b.11.1.1 (A:54-144) beta-Crystallin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 25.9 bits (57), Expect = 1.8
Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 3/43 (6%)
Query: 171 CWRIYEQLGYSNEQF---GNAAWSDTKWGGLKGGQVMAQPKPV 210
W +EQ + E F W + +P+
Sbjct: 46 PWVAFEQSNFRGEMFILEKGEYPRWNTWSSSYRSDRLMSFRPI 88
>d1c8ua1 d.38.1.3 (A:2-115) Thioesterase II (TesB) {Escherichia coli
[TaxId: 562]}
Length = 114
Score = 25.6 bits (56), Expect = 3.6
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 188 AAWSDTKWGGLKGGQVMAQ 206
D + GGQV+ Q
Sbjct: 23 GQSEDLGLRQVFGGQVVGQ 41
>d2r9fa1 d.3.1.3 (A:33-354) Calpain large subunit, catalytic domain
(domain II) {Rat (Rattus norvegicus), mu-type [TaxId:
10116]}
Length = 322
Score = 26.3 bits (57), Expect = 4.0
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 92 VEKLVETARGHYENLSLSSACEAVLDISNAGNSYMD-EHVPWSRFKQGGAASEA 144
+EK G YE LS EA D + + D + P ++ A E
Sbjct: 159 LEKAYAKVNGSYEALSGGCTSEAFEDFTGGVTEWYDLQKAPSDLYQIILKALER 212
>d1ng0a_ b.121.4.7 (A:) Sobemovirus coat protein {Cocksfoot mottle
virus [TaxId: 40979]}
Length = 192
Score = 25.7 bits (56), Expect = 5.3
Identities = 11/82 (13%), Positives = 20/82 (24%), Gaps = 10/82 (12%)
Query: 97 ETARGHYENLSLSSACEAV---LDISNAGNSYMDEHVPWSRFKQGGAASEAAAKDLVIIL 153
+ S+ S AV L N W + A +
Sbjct: 101 GGDGSSLLHTSMKSMGNAVTSALPCDEFSN-------KWFKLSWSTPEESENAHLTDTYV 153
Query: 154 EAMRIIAVALSPVTPNLCWRIY 175
A ++ VT + ++
Sbjct: 154 PARFVVRSDFPVVTADQPGHLW 175
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.130 0.376
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 889,976
Number of extensions: 40121
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 18
Length of query: 248
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,268,006
Effective search space: 209220990
Effective search space used: 209220990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.4 bits)