BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039618
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0Z|A Chain A, Solution Structure Of The First Zinc-Finger Domain From
Znf265
Length = 45
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 57 VRPGDWYCSVGNCGAHNFASRSSCFKCGATK 87
V GDW C CG NFA R+SC +CG K
Sbjct: 10 VSDGDWICPDKKCGNVNFARRTSCDRCGREK 40
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 5 GDWNC--RSCNHLNFQRRDSCQRCGEPRA 31
GDW C + C ++NF RR SC RCG +
Sbjct: 13 GDWICPDKKCGNVNFARRTSCDRCGREKT 41
>pdb|3G9Y|A Chain A, Crystal Structure Of The Second Zinc Finger From
Zranb2ZNF265 BOUND To 6 Nt Ssrna Sequence Agguaa
pdb|2K1P|A Chain A, Solution Structure Of The Second Zinc Finger Domain Of
Zranb2ZNF265
Length = 33
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 2 SRPGDWNCRSCNHLNFQRRDSCQRCGEPR 30
S DW C++C+++N+ RR C C P+
Sbjct: 2 SSANDWQCKTCSNVNWARRSECNMCNTPK 30
>pdb|2LK0|A Chain A, Solution Structure And Binding Studies Of The
Ranbp2-Type Zinc Finger Of Rbm5
pdb|2LK1|A Chain A, Solution Structure And Binding Studies Of The
Ranbp2-Type Zinc Finger Of Rbm5
Length = 32
Score = 28.5 bits (62), Expect = 2.1, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 61 DWYCSVGNCGAHNFASRSSCFKCGATKDD 89
DW C+ C +NF R CF+CGA K D
Sbjct: 5 DWLCN--KCCLNNFRKRLKCFRCGADKFD 31
Score = 26.2 bits (56), Expect = 10.0, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 6 DWNCRSCNHLNFQRRDSCQRCG 27
DW C C NF++R C RCG
Sbjct: 5 DWLCNKCCLNNFRKRLKCFRCG 26
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 28.1 bits (61), Expect = 2.7, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 7/31 (22%)
Query: 7 WNCRSCNHLNFQRRD-------SCQRCGEPR 30
W C C +N R + SC+ CG PR
Sbjct: 415 WYCEDCQAVNVPRPERYLEDPTSCEACGSPR 445
>pdb|3A9K|C Chain C, Crystal Structure Of The Mouse Tab3-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
Length = 34
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 5 GDWNCRSCNHLNFQRRDSCQRCGEPR 30
WNC SC LN + C++C PR
Sbjct: 7 APWNCDSCTFLNHPALNRCEQCEMPR 32
>pdb|1UGB|A Chain A, Human Carbonic Anhydrase Ii[hcaii] (E.C.4.2.1.1) Mutant
With Ala 65 Replaced By Gly (A65g)
Length = 258
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 155 QATSFRI--NSHGFNYQFDRGEN 175
QATS RI N HGFN +FD ++
Sbjct: 51 QATSLRILNNGHGFNVEFDDSQD 73
>pdb|3A9J|C Chain C, Crystal Structure Of The Mouse Tab2-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
Length = 34
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 5 GDWNCRSCNHLNFQRRDSCQRCGEPR 30
WNC +C LN C++C PR
Sbjct: 7 AQWNCTACTFLNHPALIRCEQCEMPR 32
>pdb|2WX0|C Chain C, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P21
pdb|2WX0|G Chain G, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P21
pdb|2WX1|C Chain C, Tab2 Nzf Domain In Complex With Lys63-Linked
Tri-Ubiquitin, P212121
Length = 31
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 5 GDWNCRSCNHLNFQRRDSCQRCGEPR 30
WNC +C LN C++C PR
Sbjct: 4 AQWNCTACTFLNHPALIRCEQCEMPR 29
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,734,662
Number of Sequences: 62578
Number of extensions: 143914
Number of successful extensions: 257
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 14
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)