BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039618
(181 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O13801|YE04_SCHPO Uncharacterized RNA-binding protein C17H9.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC17H9.04c PE=1 SV=1
Length = 604
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 50/136 (36%), Gaps = 47/136 (34%)
Query: 3 RPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSG-----------DYGSFGGRGSSSFGF 51
RPGDWNC C NFQRR SC RC P S YG+ G GSS F
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRCSFPGPTHVSAATGSNTFSPDFPYGNSYGNGSSHFIA 402
Query: 52 STGPDV------------------------------------RPGDWYCSVGNCGAHNFA 75
+ G V R GDW C CG HNFA
Sbjct: 403 NYGGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSFGGNVPFRAGDWKCGSEGCGYHNFA 462
Query: 76 SRSSCFKCGATKDDSA 91
C +CGA++ +A
Sbjct: 463 KNVCCLRCGASRATAA 478
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
Query: 1 MSRP------GDWNCRSCNHLNFQRRDSCQRCGEPR 30
+SRP GDW C C NF+RR +C RC P
Sbjct: 552 VSRPSVTTDQGDWLCE-CGFTNFRRRSNCLRCNAPH 586
>sp|P49792|RBP2_HUMAN E3 SUMO-protein ligase RanBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2
Length = 3224
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 56/148 (37%), Gaps = 25/148 (16%)
Query: 3 RPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFG-----------F 51
+ G W+C C N C C ++ ++SG SF + S FG F
Sbjct: 1415 KEGHWDCSICLVRNEPTVSRCIACQNTKSANKSGS--SFVHQASFKFGQGDLPKPINSDF 1472
Query: 52 STGPDVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGG 111
+ + G W CS C N S + C C + S +P F+FG
Sbjct: 1473 RSVFSTKEGQWDCSA--CLVQNEGSSTKCAACQNPRKQSL----PATSIPTPASFKFGTS 1526
Query: 112 GSSSSSRSGW------KSGDWICTLGLV 133
+S + +SG+ K G W C+ LV
Sbjct: 1527 ETSKTLKSGFEDMFAKKEGQWDCSSCLV 1554
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 55/147 (37%), Gaps = 22/147 (14%)
Query: 2 SRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGD---------RSGDYGSFGGRGSSSFGFS 52
++ G W+C +C N C C PR S +G+ + GF
Sbjct: 1478 TKEGQWDCSACLVQNEGSSTKCAACQNPRKQSLPATSIPTPASFKFGTSETSKTLKSGFE 1537
Query: 53 TGPDVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGG 112
+ G W CS +C N A+ + C C S +P F+FG
Sbjct: 1538 DMFAKKEGQWDCS--SCLVRNEANATRCVACQNPDKPSP-----STSVPAPASFKFGTSE 1590
Query: 113 SSSSSRSGW------KSGDWICTLGLV 133
+S + +SG+ K G W C++ LV
Sbjct: 1591 TSKAPKSGFEGMFTKKEGQWDCSVCLV 1617
>sp|Q5ZLX5|ZRAB2_CHICK Zinc finger Ran-binding domain-containing protein 2 OS=Gallus
gallus GN=ZRANB2 PE=2 SV=1
Length = 334
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 13/89 (14%)
Query: 5 GDWNC--RSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVR---- 58
GDW C + C ++NF RR SC RCG + + G + G + R
Sbjct: 11 GDWICPDKKCGNVNFARRTSCNRCGREKTTE-----AKMMKAGGTEIGKTLAEKSRGLFS 65
Query: 59 PGDWYCSVGNCGAHNFASRSSCFKCGATK 87
DW C CG N+A RS C C K
Sbjct: 66 ANDWQCKT--CGNVNWARRSECNMCNTPK 92
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 57 VRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGGSSSS 116
V GDW C CG NFA R+SC +CG K A GG G +
Sbjct: 8 VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEI--------GKTLAEK 59
Query: 117 SRSGWKSGDWIC 128
SR + + DW C
Sbjct: 60 SRGLFSANDWQC 71
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 6 DWNCRSCNHLNFQRRDSCQRCGEPRAG---DRSGDYGSFGGRGSSSF 49
DW C++C ++N+ RR C C P+ +R+G G F R + +
Sbjct: 68 DWQCKTCGNVNWARRSECNMCNTPKYAKLEERTGYGGGFNERENVEY 114
>sp|P32770|NRP1_YEAST Asparagine-rich protein OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NRP1 PE=1 SV=2
Length = 719
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 19/27 (70%)
Query: 3 RPGDWNCRSCNHLNFQRRDSCQRCGEP 29
RPGDWNC SC NFQRR +C RC P
Sbjct: 355 RPGDWNCPSCGFSNFQRRTACFRCSFP 381
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 3 RPGDWNCRSCNHLNFQRRDSCQRCGEPRA 31
R GDW C +C + NF + C RCG P++
Sbjct: 581 RAGDWKCSTCTYHNFAKNVVCLRCGGPKS 609
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 58 RPGDWYCSVGNCGAHNFASRSSCFKC 83
RPGDW C +CG NF R++CF+C
Sbjct: 355 RPGDWNCP--SCGFSNFQRRTACFRC 378
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 13/73 (17%)
Query: 58 RPGDWYCSVGNCGAHNFASRSSCFKCGATKDDS-----------AGGFGEGGDMPRMRGF 106
R GDW CS C HNFA C +CG K S + FG P
Sbjct: 581 RAGDWKCST--CTYHNFAKNVVCLRCGGPKSISGDASETNHYIDSSTFGPASRTPSNNNI 638
Query: 107 RFGGGGSSSSSRS 119
G S++ R+
Sbjct: 639 SVNTNGGSNAGRT 651
>sp|Q7M760|ZRAN1_MOUSE Ubiquitin thioesterase Zranb1 OS=Mus musculus GN=Zranb1 PE=2 SV=1
Length = 708
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 12/93 (12%)
Query: 1 MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGP----- 55
M W+C C +LN+ R C +C R + G GS FS P
Sbjct: 82 MENANKWSCHMCTYLNWPRAIRCTQCLSQRRTRSPTESPQSSGSGSRPVAFSVDPCEEYN 141
Query: 56 -----DVRPGDWYCSVGNCGAHNFASRSSCFKC 83
+ R W CSV C N+A C C
Sbjct: 142 DRNKLNTRTQHWTCSV--CTYENWAKAKKCVVC 172
>sp|O95218|ZRAB2_HUMAN Zinc finger Ran-binding domain-containing protein 2 OS=Homo
sapiens GN=ZRANB2 PE=1 SV=2
Length = 330
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 5 GDWNC--RSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVR---- 58
GDW C + C ++NF RR SC RCG + + G + G + R
Sbjct: 11 GDWICPDKKCGNVNFARRTSCNRCGREKTTE-----AKMMKAGGTEIGKTLAEKSRGLFS 65
Query: 59 PGDWYCSVGNCGAHNFASRSSCFKCGATK 87
DW C C N+A RS C C K
Sbjct: 66 ANDWQCKT--CSNVNWARRSECNMCNTPK 92
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 57 VRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGGSSSS 116
V GDW C CG NFA R+SC +CG K A GG G +
Sbjct: 8 VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEI--------GKTLAEK 59
Query: 117 SRSGWKSGDWIC 128
SR + + DW C
Sbjct: 60 SRGLFSANDWQC 71
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 6 DWNCRSCNHLNFQRRDSCQRCGEPRAG---DRSGDYGSFGGRGSSSF 49
DW C++C+++N+ RR C C P+ +R+G G F R + +
Sbjct: 68 DWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGGFNERENVEY 114
>sp|Q5R580|ZRAB2_PONAB Zinc finger Ran-binding domain-containing protein 2 OS=Pongo
abelii GN=ZRANB2 PE=2 SV=1
Length = 320
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 5 GDWNC--RSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVR---- 58
GDW C + C ++NF RR SC RCG + + G + G + R
Sbjct: 11 GDWICPDKKCGNVNFARRTSCNRCGREKTTE-----AKMMKAGGTEIGKTLAEKSRGLFS 65
Query: 59 PGDWYCSVGNCGAHNFASRSSCFKCGATK 87
DW C C N+A RS C C K
Sbjct: 66 ANDWQCKT--CSNVNWARRSECNMCNTPK 92
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 57 VRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGGSSSS 116
V GDW C CG NFA R+SC +CG K A GG G +
Sbjct: 8 VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEI--------GKTLAEK 59
Query: 117 SRSGWKSGDWIC 128
SR + + DW C
Sbjct: 60 SRGLFSANDWQC 71
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 6 DWNCRSCNHLNFQRRDSCQRCGEPRAG---DRSGDYGSFGGRGSSSF 49
DW C++C+++N+ RR C C P+ +R+G G F R + +
Sbjct: 68 DWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGGFNERENVEY 114
>sp|A6QP16|ZRAN1_BOVIN Ubiquitin thioesterase ZRANB1 OS=Bos taurus GN=ZRANB1 PE=2 SV=1
Length = 708
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 39/111 (35%), Gaps = 14/111 (12%)
Query: 1 MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGP----- 55
M W+C C +LN+ R C +C R + G GS FS P
Sbjct: 82 MENANKWSCHMCTYLNWPRAIRCTQCLSQRRTRSPTESPQSSGSGSRPVAFSVDPCEEYN 141
Query: 56 -----DVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDD--SAGGFGEGGD 99
+ R W CS+ C N+A C C + + A F E +
Sbjct: 142 DRNKLNTRTQHWTCSI--CTYENWAKAKKCVVCDHPRPNNIEAIEFAETEE 190
>sp|O35986|ZRAB2_RAT Zinc finger Ran-binding domain-containing protein 2 OS=Rattus
norvegicus GN=Zranb2 PE=2 SV=2
Length = 330
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 5 GDWNC--RSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVR---- 58
GDW C + C ++NF RR SC RCG + + G + G + R
Sbjct: 11 GDWICPDKKCGNVNFARRTSCNRCGREKTTE-----AKMMKAGGTEIGKTLAEKSRGLFS 65
Query: 59 PGDWYCSVGNCGAHNFASRSSCFKCGATK 87
DW C C N+A RS C C K
Sbjct: 66 ANDWQCKT--CSNVNWARRSECNMCNTPK 92
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 57 VRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGGSSSS 116
V GDW C CG NFA R+SC +CG K A GG G +
Sbjct: 8 VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEI--------GKTLAEK 59
Query: 117 SRSGWKSGDWIC 128
SR + + DW C
Sbjct: 60 SRGLFSANDWQC 71
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 6 DWNCRSCNHLNFQRRDSCQRCGEPRAG---DRSGDYGSFGGRGSSSF 49
DW C++C+++N+ RR C C P+ +R+G G F R + +
Sbjct: 68 DWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGGFNERENVEY 114
>sp|Q9R020|ZRAB2_MOUSE Zinc finger Ran-binding domain-containing protein 2 OS=Mus
musculus GN=Zranb2 PE=1 SV=2
Length = 330
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 5 GDWNC--RSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVR---- 58
GDW C + C ++NF RR SC RCG + + G + G + R
Sbjct: 11 GDWICPDKKCGNVNFARRTSCNRCGREKTTE-----AKMMKAGGTEIGKTLAEKSRGLFS 65
Query: 59 PGDWYCSVGNCGAHNFASRSSCFKCGATK 87
DW C C N+A RS C C K
Sbjct: 66 ANDWQCKT--CSNVNWARRSECNMCNTPK 92
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 57 VRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGGSSSS 116
V GDW C CG NFA R+SC +CG K A GG G +
Sbjct: 8 VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEI--------GKTLAEK 59
Query: 117 SRSGWKSGDWIC 128
SR + + DW C
Sbjct: 60 SRGLFSANDWQC 71
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 6 DWNCRSCNHLNFQRRDSCQRCGEPRAG---DRSGDYGSFGGRGSSSF 49
DW C++C+++N+ RR C C P+ +R+G G F R + +
Sbjct: 68 DWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGGFNERENVEY 114
>sp|Q19QU3|ZRAB2_PIG Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa
GN=ZRANB2 PE=2 SV=1
Length = 328
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 5 GDWNC--RSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVR---- 58
GDW C + C ++NF RR SC RCG + + G + G + R
Sbjct: 11 GDWICPDKKCGNVNFARRTSCNRCGREKTTE-----AKMMKAGGTEIGKTLAEKSRGLFS 65
Query: 59 PGDWYCSVGNCGAHNFASRSSCFKCGATK 87
DW C C N+A RS C C K
Sbjct: 66 ANDWQCKT--CSNVNWARRSECNMCNTPK 92
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 57 VRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGGSSSS 116
V GDW C CG NFA R+SC +CG K A GG G +
Sbjct: 8 VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEI--------GKTLAEK 59
Query: 117 SRSGWKSGDWIC 128
SR + + DW C
Sbjct: 60 SRGLFSANDWQC 71
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 6 DWNCRSCNHLNFQRRDSCQRCGEPRAG---DRSGDYGSFGGRGSSSF 49
DW C++C+++N+ RR C C P+ +R+G G F R + +
Sbjct: 68 DWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGGFNERENVEY 114
>sp|Q9UGI0|ZRAN1_HUMAN Ubiquitin thioesterase ZRANB1 OS=Homo sapiens GN=ZRANB1 PE=1 SV=2
Length = 708
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 36/104 (34%), Gaps = 12/104 (11%)
Query: 1 MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGP----- 55
M W+C C +LN+ R C +C R + G GS FS P
Sbjct: 82 MENANKWSCHMCTYLNWPRAIRCTQCLSQRRTRSPTESPQSSGSGSRPVAFSVDPCEEYN 141
Query: 56 -----DVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGF 94
+ R W CSV C N+A C C + ++
Sbjct: 142 DRNKLNTRTQHWTCSV--CTYENWAKAKRCVVCDHPRPNNIEAI 183
>sp|Q9BXU3|TX13A_HUMAN Testis-expressed sequence 13A protein OS=Homo sapiens GN=TEX13A
PE=2 SV=1
Length = 409
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 3 RPGDWNCRSCNHLNFQRRDSCQRCGE 28
RPGDW+C CN +NF RRD+C CG+
Sbjct: 376 RPGDWDCPWCNAVNFSRRDTCFDCGK 401
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 58 RPGDWYCSVGNCGAHNFASRSSCFKCG 84
RPGDW C C A NF+ R +CF CG
Sbjct: 376 RPGDWDCPW--CNAVNFSRRDTCFDCG 400
>sp|Q27294|CAZ_DROME RNA-binding protein cabeza OS=Drosophila melanogaster GN=caz PE=2
SV=2
Length = 399
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 3 RPGDWNCRSCNHLNFQRRDSCQRCGEPRAGD 33
R GDW C SCN+ NF R+ C RC P+ D
Sbjct: 275 RDGDWKCNSCNNTNFAWRNECNRCKTPKGDD 305
>sp|Q9ERU9|RBP2_MOUSE E3 SUMO-protein ligase RanBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=2
Length = 3053
Score = 40.4 bits (93), Expect = 0.007, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 53/142 (37%), Gaps = 26/142 (18%)
Query: 7 WNCRSCNHLNFQRRDSCQRC--GEPRAGDR-------SGDYGSFGGRGSSSFGFSTGPDV 57
WNC SC+ N C C P + + G ++ F+T
Sbjct: 1350 WNCNSCSFKNAATAKKCVSCQNTNPTSNKELLGPPLVENGFAPKTGLENAQDRFATMTAN 1409
Query: 58 RPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGGSSSSS 117
+ G W CSV C N + S C C TK SA F + F+FG G S
Sbjct: 1410 KEGHWDCSV--CLVRNEPTVSRCIACQNTK--SASSFVQ-------TSFKFGQGDLPKSV 1458
Query: 118 RSGWKS------GDWICTLGLV 133
S ++S G W C++ LV
Sbjct: 1459 DSDFRSVFSKKEGQWECSVCLV 1480
>sp|Q92804|RBP56_HUMAN TATA-binding protein-associated factor 2N OS=Homo sapiens GN=TAF15
PE=1 SV=1
Length = 592
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 3 RPGDWNCR--SCNHLNFQRRDSCQRCGEPRAGD 33
+ GDW C SC ++NF RR+SC +C EPR D
Sbjct: 354 KSGDWVCPNPSCGNMNFARRNSCNQCNEPRPED 386
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 56 DVRPGDWYCSVGNCGAHNFASRSSCFKCGATK 87
D + GDW C +CG NFA R+SC +C +
Sbjct: 352 DPKSGDWVCPNPSCGNMNFARRNSCNQCNEPR 383
>sp|Q8GZ43|YZR3_ARATH RanBP2-type zinc finger protein At1g67325 OS=Arabidopsis thaliana
GN=At1g67325 PE=1 SV=1
Length = 288
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 16/90 (17%)
Query: 2 SRPGDWNCRSCNHLNFQRRDSC--QRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVRP 59
+R DW C +C ++NF R C ++C P+ G + G GS S P+
Sbjct: 193 TRDNDWTCPNCGNVNFSFRTVCNMRKCNTPKPGSQQG--GS-----SDKISKQNAPE--- 242
Query: 60 GDWYCSVGNCGAHNFASRSSCFK--CGATK 87
G W C NCG N+ RS C + CGA K
Sbjct: 243 GSWKCD--NCGNINYPFRSKCNRQNCGADK 270
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 3 RPGDWNCRSCNHLNFQRRDSC--QRCGEPRAGDRSG 36
R DW C SC ++NF R +C + C +PR D +G
Sbjct: 22 REDDWICPSCGNVNFSFRTTCNMRNCTQPRPADHNG 57
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 5 GDWNCRSCNHLNFQRRDSCQR--CGEPRAGDRS 35
G W C +C ++N+ R C R CG + GDRS
Sbjct: 243 GSWKCDNCGNINYPFRSKCNRQNCGADKPGDRS 275
>sp|A0JMV4|RBM5A_XENLA RNA-binding protein 5-A OS=Xenopus laevis GN=rbm5-a PE=2 SV=1
Length = 833
Score = 37.7 bits (86), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 23/112 (20%)
Query: 53 TGPDVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGG 112
+ P + DW C+ CG +NF R CF+CGA K +S DM
Sbjct: 180 SNPRPKFEDWLCN--KCGLYNFRRRLKCFRCGAAKAES--------DM-----------E 218
Query: 113 SSSSSRSGWKSGDWICTLGLVAMSTILQ--AEQNVLDAVHQGILQATSFRIN 162
+ S S +S D+ G V+ + IL+ V+D++ + S ++
Sbjct: 219 APSGSSEAPQSADYYSDSGYVSSAIILRNIGPHTVVDSILSALAPYVSLVVS 270
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 12/56 (21%)
Query: 6 DWNCRSCNHLNFQRRDSCQRCGEPRA------------GDRSGDYGSFGGRGSSSF 49
DW C C NF+RR C RCG +A +S DY S G SS+
Sbjct: 188 DWLCNKCGLYNFRRRLKCFRCGAAKAESDMEAPSGSSEAPQSADYYSDSGYVSSAI 243
>sp|Q6DDU9|RBM5B_XENLA RNA-binding protein 5-B OS=Xenopus laevis GN=rbm5-b PE=2 SV=1
Length = 749
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 23/104 (22%)
Query: 61 DWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGGSSSSSRSG 120
DW C+ CG +NF R CF+CGA K +S DM GSS +
Sbjct: 188 DWLCN--KCGLYNFRRRLKCFRCGAAKAES--------DME-------APSGSSETP--- 227
Query: 121 WKSGDWICTLGLVAMSTILQ--AEQNVLDAVHQGILQATSFRIN 162
+S D+ G V+ + IL+ V+D++ + S ++
Sbjct: 228 -QSADYYSDSGYVSSAIILRNIGPHTVVDSILSALAPYVSLVVS 270
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 6 DWNCRSCNHLNFQRRDSCQRCGEPRA 31
DW C C NF+RR C RCG +A
Sbjct: 188 DWLCNKCGLYNFRRRLKCFRCGAAKA 213
>sp|A4IGK4|RBM5_XENTR RNA-binding protein 5 OS=Xenopus tropicalis GN=rbm5 PE=2 SV=1
Length = 838
Score = 37.0 bits (84), Expect = 0.062, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 53 TGPDVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDS 90
+ P + DW C+ CG +NF R CF+CGA K +S
Sbjct: 181 SNPRPKFEDWLCN--KCGLYNFRRRLKCFRCGAAKAES 216
Score = 34.3 bits (77), Expect = 0.51, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 6 DWNCRSCNHLNFQRRDSCQRCGEPRA 31
DW C C NF+RR C RCG +A
Sbjct: 189 DWLCNKCGLYNFRRRLKCFRCGAAKA 214
>sp|Q99KG3|RBM10_MOUSE RNA-binding protein 10 OS=Mus musculus GN=Rbm10 PE=1 SV=1
Length = 930
Score = 37.0 bits (84), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 61 DWYCSVGNCGAHNFASRSSCFKCGATKDDS 90
DW C+ CG NF R CFKCG K ++
Sbjct: 216 DWLCN--KCGVQNFKRREKCFKCGVPKSEA 243
Score = 34.3 bits (77), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 6 DWNCRSCNHLNFQRRDSCQRCGEPRA 31
DW C C NF+RR+ C +CG P++
Sbjct: 216 DWLCNKCGVQNFKRREKCFKCGVPKS 241
>sp|P98175|RBM10_HUMAN RNA-binding protein 10 OS=Homo sapiens GN=RBM10 PE=1 SV=3
Length = 930
Score = 37.0 bits (84), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 61 DWYCSVGNCGAHNFASRSSCFKCGATKDDS 90
DW C+ CG NF R CFKCG K ++
Sbjct: 216 DWLCN--KCGVQNFKRREKCFKCGVPKSEA 243
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 6 DWNCRSCNHLNFQRRDSCQRCGEPRA 31
DW C C NF+RR+ C +CG P++
Sbjct: 216 DWLCNKCGVQNFKRREKCFKCGVPKS 241
>sp|P70501|RBM10_RAT RNA-binding protein 10 OS=Rattus norvegicus GN=Rbm10 PE=2 SV=1
Length = 852
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 61 DWYCSVGNCGAHNFASRSSCFKCGATKDDS 90
DW C+ CG NF R CFKCG K ++
Sbjct: 139 DWLCN--KCGVQNFKRREKCFKCGVPKSEA 166
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 6 DWNCRSCNHLNFQRRDSCQRCGEPRA 31
DW C C NF+RR+ C +CG P++
Sbjct: 139 DWLCNKCGVQNFKRREKCFKCGVPKS 164
>sp|Q61545|EWS_MOUSE RNA-binding protein EWS OS=Mus musculus GN=Ewsr1 PE=1 SV=2
Length = 655
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 58 RPGDWYCSVGNCGAHNFASRSSCFKCGATK 87
R GDW C CG NFA R+ C +C A K
Sbjct: 517 RAGDWQCPNPGCGNQNFAWRTECNQCKAPK 546
>sp|Q01844|EWS_HUMAN RNA-binding protein EWS OS=Homo sapiens GN=EWSR1 PE=1 SV=1
Length = 656
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 58 RPGDWYCSVGNCGAHNFASRSSCFKCGATK 87
R GDW C CG NFA R+ C +C A K
Sbjct: 518 RAGDWQCPNPGCGNQNFAWRTECNQCKAPK 547
>sp|Q8S9K3|VAR3_ARATH Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana
GN=VAR3 PE=1 SV=2
Length = 758
Score = 34.7 bits (78), Expect = 0.35, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 24/79 (30%)
Query: 5 GDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVRPGDWYC 64
GDW C C+ +NF R C +C E R + + +W C
Sbjct: 278 GDWICSRCSGMNFARNVKCFQCDEARPKRQ----------------------LTGSEWEC 315
Query: 65 SVGNCGAHNFASRSSCFKC 83
C +N+ +C +C
Sbjct: 316 P--QCDFYNYGRNVACLRC 332
Score = 34.7 bits (78), Expect = 0.36, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 38 YGSFGGRGSSSFGFSTGPDVRPGDWYCSVGNCGAHNFASRSSCFKC 83
Y G+G SF +++ GDW CS C NFA CF+C
Sbjct: 258 YSDRDGQGVRSF--QNNVEMKRGDWICS--RCSGMNFARNVKCFQC 299
>sp|Q1RMU5|RBM5_BOVIN RNA-binding protein 5 OS=Bos taurus GN=RBM5 PE=2 SV=1
Length = 815
Score = 34.3 bits (77), Expect = 0.40, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 53 TGPDVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDS 90
+ P + DW C+ C +NF R CF+CGA K DS
Sbjct: 176 SNPRPKFEDWLCN--KCCLNNFRKRLKCFRCGADKFDS 211
>sp|B2GV05|RBM5_RAT RNA-binding protein 5 OS=Rattus norvegicus GN=Rbm5 PE=2 SV=1
Length = 815
Score = 34.3 bits (77), Expect = 0.42, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 53 TGPDVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDS 90
+ P + DW C+ C +NF R CF+CGA K DS
Sbjct: 176 SNPRPKFEDWLCN--KCCLNNFRKRLKCFRCGADKFDS 211
>sp|Q91YE7|RBM5_MOUSE RNA-binding protein 5 OS=Mus musculus GN=Rbm5 PE=1 SV=1
Length = 815
Score = 34.3 bits (77), Expect = 0.44, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 53 TGPDVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDS 90
+ P + DW C+ C +NF R CF+CGA K DS
Sbjct: 176 SNPRPKFEDWLCN--KCCLNNFRKRLKCFRCGADKFDS 211
>sp|P52756|RBM5_HUMAN RNA-binding protein 5 OS=Homo sapiens GN=RBM5 PE=1 SV=2
Length = 815
Score = 34.3 bits (77), Expect = 0.45, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 53 TGPDVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDS 90
+ P + DW C+ C +NF R CF+CGA K DS
Sbjct: 176 SNPRPKFEDWLCN--KCCLNNFRKRLKCFRCGADKFDS 211
>sp|P87143|YDMD_SCHPO Uncharacterized RNA-binding protein C57A7.13 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC57A7.13 PE=4 SV=1
Length = 565
Score = 33.5 bits (75), Expect = 0.72, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 7 WNCRSCNHLNFQRRDSCQRCGEPR 30
W C++C+ LN+ R+SC +C PR
Sbjct: 159 WCCQNCDILNYSYRESCFKCRVPR 182
>sp|Q7ZXH3|TAB3_XENLA Mitogen-activated protein kinase kinase kinase 7-interacting
protein 3 homolog OS=Xenopus laevis GN=map3k7ip3 PE=2
SV=1
Length = 692
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 7 WNCRSCNHLNFQRRDSCQRCGEPR 30
WNC SC LN + C++C PR
Sbjct: 667 WNCNSCTFLNHPALNRCEQCEMPR 690
>sp|O75808|CAN15_HUMAN Calpain-15 OS=Homo sapiens GN=SOLH PE=2 SV=1
Length = 1086
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 31/93 (33%), Gaps = 16/93 (17%)
Query: 1 MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVRPG 60
M+ G+W+C C LN + C C PR V
Sbjct: 1 MATVGEWSCVRCTFLNPAGQRQCSICEAPRHKPDLNHILRL--------------SVEEQ 46
Query: 61 DWYCSVGNCGAHNFASRSSCFKCGATKDDSAGG 93
W C+ C NF + +C CG T + + G
Sbjct: 47 KWPCA--RCTFRNFLGKEACEVCGFTPEPAPGA 77
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 3 RPGDWNCRSCNHLNFQRRDSCQRCGEPR 30
RPG W C +C LN R C C P+
Sbjct: 412 RPGQWACPACTLLNALRAKHCAACHTPQ 439
>sp|Q5U595|ZRN1A_XENLA Ubiquitin thioesterase zranb1-A OS=Xenopus laevis GN=zranb1-a PE=2
SV=1
Length = 701
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 43/139 (30%), Gaps = 27/139 (19%)
Query: 1 MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGP----- 55
M W+C+ C +LN+ R C +C R + G G S P
Sbjct: 77 MEPSSKWSCQICTYLNWPRAIRCTQCLSQRRTRSPTESPQSSGSGLRSIPSPIDPCEEYN 136
Query: 56 -----DVRPGDWYCSVGNCGAHNFASRSSCFKCG-----------ATKDDSAGGFGEGGD 99
+++ W CS C N A C C D A D
Sbjct: 137 DRNKLNIKGQHWTCSA--CTYENCAKAKKCVVCDHPTPNNMDAIELANTDEASSIINEQD 194
Query: 100 MPRMRGFRFGGGGSSSSSR 118
R R GG SS+S R
Sbjct: 195 RARWR----GGCSSSNSQR 209
>sp|Q96EP0|RNF31_HUMAN E3 ubiquitin-protein ligase RNF31 OS=Homo sapiens GN=RNF31 PE=1
SV=1
Length = 1072
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 7 WNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVRPGDWYCSV 66
W+C +C LN C C PR G + G+ G +G+ PD+ G W C
Sbjct: 304 WHCAACAMLNEPWAVLCVACDRPR-GCKGLGLGTEGPQGTGGL----EPDLARGRWACQ- 357
Query: 67 GNCGAHNFASRSSCFKC 83
+C N A+ C C
Sbjct: 358 -SCTFENEAAAVLCSIC 373
>sp|Q9JLG8|CAN15_MOUSE Calpain-15 OS=Mus musculus GN=Solh PE=1 SV=1
Length = 1095
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 30/93 (32%), Gaps = 16/93 (17%)
Query: 1 MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGPDVRPG 60
M+ G+W+C C LN + C C PR V
Sbjct: 1 MATVGEWSCARCTFLNPAGQRQCSICEAPRHKPDLDQILRLS--------------VEEQ 46
Query: 61 DWYCSVGNCGAHNFASRSSCFKCGATKDDSAGG 93
W C+ C NF + +C CG T + G
Sbjct: 47 KWPCA--RCTFRNFLGKEACEVCGFTPEPVPGA 77
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 3 RPGDWNCRSCNHLNFQRRDSCQRCGEPR 30
RPG W C +C +N R C C P+
Sbjct: 422 RPGQWACPACTLINTPRAKHCAACHTPQ 449
>sp|Q6NUB7|ZRN1B_XENLA Ubiquitin thioesterase zranb1-B OS=Xenopus laevis GN=zranb1-b PE=2
SV=1
Length = 701
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 43/139 (30%), Gaps = 27/139 (19%)
Query: 1 MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGGRGSSSFGFSTGP----- 55
M W+C+ C +LN+ R C +C R + G G S P
Sbjct: 77 METSSKWSCQICTYLNWPRAIRCTQCLSQRRTRSPTESPQSSGSGLRSIPGPIDPCEEYN 136
Query: 56 -----DVRPGDWYCSVGNCGAHNFASRSSCFKCG-----------ATKDDSAGGFGEGGD 99
+++ W CS C N A C C D A D
Sbjct: 137 DRNKLNIKGQHWTCSA--CTYENCAKAKKCVVCDHPTPNNMDAIELANTDEASSIINEQD 194
Query: 100 MPRMRGFRFGGGGSSSSSR 118
R R GG SS+S R
Sbjct: 195 RARWR----GGCSSSNSQR 209
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,779,954
Number of Sequences: 539616
Number of extensions: 3366034
Number of successful extensions: 11356
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 204
Number of HSP's that attempted gapping in prelim test: 9953
Number of HSP's gapped (non-prelim): 1201
length of query: 181
length of database: 191,569,459
effective HSP length: 110
effective length of query: 71
effective length of database: 132,211,699
effective search space: 9387030629
effective search space used: 9387030629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)