Query 039618
Match_columns 181
No_of_seqs 208 out of 619
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 19:50:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gj8_B Nuclear pore complex pr 99.7 1.8E-18 6.1E-23 126.6 1.3 89 57-153 4-92 (92)
2 3gj8_B Nuclear pore complex pr 99.7 6.1E-18 2.1E-22 123.8 2.4 85 2-89 4-91 (92)
3 3gj7_B Nuclear pore complex pr 99.2 1.2E-12 4E-17 96.9 1.5 86 57-152 5-98 (98)
4 1n0z_A ZNF265; zinc finger, RN 99.2 1.8E-11 6.3E-16 78.6 4.4 37 54-90 7-43 (45)
5 2lk0_A RNA-binding protein 5; 99.1 2.4E-11 8.2E-16 72.8 2.5 31 2-32 1-31 (32)
6 2k1p_A Zinc finger RAN-binding 99.1 5.2E-11 1.8E-15 71.7 3.6 31 57-89 2-32 (33)
7 3gj7_B Nuclear pore complex pr 99.1 3.8E-11 1.3E-15 88.8 2.3 83 4-88 7-97 (98)
8 2lk0_A RNA-binding protein 5; 99.1 4.6E-11 1.6E-15 71.5 2.2 30 58-89 2-31 (32)
9 2k1p_A Zinc finger RAN-binding 99.0 7.5E-11 2.6E-15 71.0 2.4 31 2-32 2-32 (33)
10 1n0z_A ZNF265; zinc finger, RN 98.9 7.3E-10 2.5E-14 71.1 2.7 32 2-33 10-43 (45)
11 3gj5_B Nuclear pore complex pr 98.7 5E-09 1.7E-13 63.6 1.2 32 121-153 3-34 (34)
12 2ebq_A Nuclear pore complex pr 98.6 2.8E-08 9.5E-13 64.3 2.7 43 118-161 4-46 (47)
13 3gj3_B Nuclear pore complex pr 98.6 1.8E-08 6.1E-13 60.7 1.5 31 121-152 3-33 (33)
14 2ebr_A Nuclear pore complex pr 98.5 4.2E-08 1.4E-12 63.5 2.8 38 117-155 3-40 (47)
15 2ebv_A Nuclear pore complex pr 98.5 1.6E-07 5.5E-12 63.0 4.9 35 117-152 23-57 (57)
16 3gj5_B Nuclear pore complex pr 98.2 4.8E-07 1.6E-11 54.8 2.1 31 2-32 3-33 (34)
17 3gj3_B Nuclear pore complex pr 98.1 1.1E-06 3.6E-11 52.9 2.2 30 3-32 4-33 (33)
18 2ebq_A Nuclear pore complex pr 98.1 2.1E-06 7.2E-11 55.5 3.1 34 1-34 6-39 (47)
19 2ebr_A Nuclear pore complex pr 97.9 1.1E-05 3.8E-10 52.0 4.0 36 54-91 4-39 (47)
20 2ebv_A Nuclear pore complex pr 97.8 2.1E-05 7.2E-10 52.7 4.5 39 48-88 18-56 (57)
21 2d9g_A YY1-associated factor 2 97.3 0.00017 5.8E-09 47.4 2.9 34 119-153 5-38 (53)
22 2d9g_A YY1-associated factor 2 96.7 0.0045 1.6E-07 40.5 6.1 33 57-91 7-39 (53)
23 3a9j_C Mitogen-activated prote 95.8 0.005 1.7E-07 36.4 2.4 28 4-31 6-33 (34)
24 1nj3_A NPL4; NZF domain, rubre 95.5 0.0086 2.9E-07 34.6 2.5 27 4-30 4-30 (31)
25 3a9j_C Mitogen-activated prote 95.1 0.015 5.2E-07 34.2 2.7 28 59-88 6-33 (34)
26 1nj3_A NPL4; NZF domain, rubre 94.9 0.023 8E-07 32.7 3.1 27 59-87 4-30 (31)
27 2crc_A Ubiquitin conjugating e 93.9 0.03 1E-06 36.5 2.2 29 5-33 9-37 (52)
28 2c6a_A Ubiquitin-protein ligas 93.8 0.019 6.4E-07 36.6 1.1 35 123-158 11-45 (46)
29 2crc_A Ubiquitin conjugating e 92.8 0.14 4.8E-06 33.2 4.2 30 59-90 8-37 (52)
30 3b08_B Ranbp-type and C3HC4-ty 92.5 0.071 2.4E-06 36.2 2.4 29 5-33 7-35 (64)
31 2c6a_A Ubiquitin-protein ligas 89.5 0.2 7E-06 31.8 2.3 28 4-31 11-38 (46)
32 3b08_B Ranbp-type and C3HC4-ty 89.1 0.27 9.2E-06 33.3 2.8 30 59-90 6-35 (64)
33 1w7p_D VPS36P, YLR417W; ESCRT- 84.2 0.2 6.8E-06 46.7 0.0 82 4-89 115-206 (566)
34 2cr8_A MDM4 protein; ZF-ranbp 79.9 1.4 4.9E-05 28.5 2.9 38 123-161 9-46 (53)
35 2cr8_A MDM4 protein; ZF-ranbp 76.6 1.5 5.2E-05 28.4 2.2 27 5-31 10-36 (53)
36 2kn9_A Rubredoxin; metalloprot 72.2 6.1 0.00021 27.7 4.7 17 53-71 52-68 (81)
37 2ayj_A 50S ribosomal protein L 68.3 2.2 7.6E-05 28.1 1.6 24 6-29 19-42 (56)
38 4b2u_A S67; toxin, ICK; NMR {S 67.6 1.1 3.6E-05 26.4 -0.1 15 119-133 12-26 (36)
39 1dx8_A Rubredoxin; electron tr 64.5 6.6 0.00023 26.6 3.5 16 54-71 33-48 (70)
40 6rxn_A Rubredoxin; electron tr 63.3 2.6 9E-05 26.4 1.2 17 119-135 24-40 (46)
41 3pwf_A Rubrerythrin; non heme 62.0 2.5 8.6E-05 33.1 1.1 33 123-155 136-168 (170)
42 1e8j_A Rubredoxin; iron-sulfur 59.7 5.7 0.00019 25.4 2.3 18 117-134 28-45 (52)
43 2j9u_B VPS36, vacuolar protein 59.7 1.5 5E-05 30.6 -0.6 39 123-161 15-61 (76)
44 2j9u_B VPS36, vacuolar protein 59.4 5.1 0.00017 27.9 2.1 18 5-22 16-33 (76)
45 1s24_A Rubredoxin 2; electron 58.9 8.3 0.00028 27.3 3.3 16 54-71 61-76 (87)
46 4rxn_A Rubredoxin; electron tr 55.5 4.8 0.00016 26.1 1.4 18 118-135 29-46 (54)
47 1dl6_A Transcription factor II 54.7 7.2 0.00025 25.2 2.2 15 121-135 26-40 (58)
48 2kn9_A Rubredoxin; metalloprot 54.1 6.9 0.00024 27.4 2.1 19 117-135 52-70 (81)
49 1yk4_A Rubredoxin, RD; electro 53.7 5.3 0.00018 25.5 1.4 18 118-135 28-45 (52)
50 2v3b_B Rubredoxin 2, rubredoxi 53.1 5.4 0.00018 25.8 1.4 19 117-135 28-46 (55)
51 1yuz_A Nigerythrin; rubrythrin 52.0 4.2 0.00014 32.6 0.8 27 124-151 170-197 (202)
52 3j21_g 50S ribosomal protein L 51.9 6.8 0.00023 25.1 1.7 25 5-29 13-37 (51)
53 4b2v_A S64; toxin, ICK; NMR {S 48.8 6.3 0.00022 22.5 1.0 15 119-133 12-26 (32)
54 1lko_A Rubrerythrin all-iron(I 45.6 5.4 0.00019 31.5 0.5 27 125-152 155-183 (191)
55 1w7p_D VPS36P, YLR417W; ESCRT- 45.1 4.5 0.00015 37.6 0.0 85 57-152 113-206 (566)
56 3v43_A Histone acetyltransfera 36.8 28 0.00094 24.9 3.2 20 57-86 51-70 (112)
57 2ayj_A 50S ribosomal protein L 34.7 18 0.00061 23.7 1.6 26 58-85 16-41 (56)
58 2kdx_A HYPA, hydrogenase/ureas 32.7 23 0.00079 25.6 2.2 28 4-31 71-101 (119)
59 1f62_A Transcription factor WS 31.7 16 0.00055 22.3 1.0 11 123-133 39-49 (51)
60 3k7a_M Transcription initiatio 28.0 50 0.0017 28.0 3.9 15 121-135 38-52 (345)
61 3a43_A HYPD, hydrogenase nicke 27.1 35 0.0012 25.6 2.4 28 4-31 68-118 (139)
62 1mm2_A MI2-beta; PHD, zinc fin 25.9 21 0.00073 22.9 0.9 13 123-135 45-57 (61)
63 2l5u_A Chromodomain-helicase-D 25.3 23 0.00078 22.7 0.9 11 123-133 47-57 (61)
64 2lri_C Autoimmune regulator; Z 25.2 27 0.00092 23.0 1.3 12 122-133 47-58 (66)
65 1fp0_A KAP-1 corepressor; PHD 22.1 33 0.0011 24.1 1.3 25 57-85 21-45 (88)
66 2ku3_A Bromodomain-containing 21.6 20 0.00067 24.0 0.0 13 122-134 54-66 (71)
67 1yuz_A Nigerythrin; rubrythrin 21.1 39 0.0013 26.8 1.7 27 60-88 170-197 (202)
No 1
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=99.70 E-value=1.8e-18 Score=126.57 Aligned_cols=89 Identities=21% Similarity=0.405 Sum_probs=26.7
Q ss_pred CCCCCcccCCCCCCCccccCCcccccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCcccCCCCccch
Q 039618 57 VRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGGSSSSSRSGWKSGDWICTLGLVAMS 136 (181)
Q Consensus 57 ~~~GdW~C~~~~C~~~Nfa~R~~C~~C~apkp~~~~~~g~~~~~~~~~g~g~g~~~~~~~~~~~~k~GDW~C~~C~~~N~ 136 (181)
.++|||+|+ .|+++||++++.|++|++|||........ +..+. .+..+...+..++..++|||+|+.|+++|
T Consensus 4 ~~~g~W~C~--~C~~~N~~~~~~C~~C~~pkp~~~~~~~~-~~~~~----~~~~~~~~g~~~f~~~~g~W~C~~C~~~N- 75 (92)
T 3gj8_B 4 GSVGSWECP--VCCVSNKAEDSRCVSCTSEKPGLVSASSS-NSVPV----SLPSGGCLGLDKFKKPEGSWDCEVCLVQN- 75 (92)
T ss_dssp -------------------------------------------------------------------CCEECTTTCCEE-
T ss_pred CCCcCCCCC--cCCCEeccccceecccCCCCCCCCCcccc-ccCcc----cccccccccccccCCCCCcccCCcCCcCC-
Confidence 468999999 99999999999999999999864422110 00000 00000000012355689999999999999
Q ss_pred hhhhhhccccCCCcCCc
Q 039618 137 TILQAEQNVLDAVHQGI 153 (181)
Q Consensus 137 ~a~r~~Cn~c~~~~~g~ 153 (181)
++++.+|++|+++|+++
T Consensus 76 ~a~~~~C~~C~~pkp~~ 92 (92)
T 3gj8_B 76 KADSTKCIACESAKPGT 92 (92)
T ss_dssp CSSCSBCTTTCCBCC--
T ss_pred hhhcccccccCCCCCCC
Confidence 99999999999999974
No 2
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=99.68 E-value=6.1e-18 Score=123.76 Aligned_cols=85 Identities=22% Similarity=0.498 Sum_probs=26.6
Q ss_pred CCCCceEcCCCCccceeccccccccCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCcccCCCCCCCccccCCc
Q 039618 2 SRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGDYGSFGG---RGSSSFGFSTGPDVRPGDWYCSVGNCGAHNFASRS 78 (181)
Q Consensus 2 ~k~GdW~C~~C~~~Nfa~r~~C~~C~~pkp~~~~~~~~~~gg---~~~~~~g~~~~~~~~~GdW~C~~~~C~~~Nfa~R~ 78 (181)
.++|||+|+.|.++||++++.|++|++|||............ ......+| +.+..++|+|+|. .|.++|+++++
T Consensus 4 ~~~g~W~C~~C~~~N~~~~~~C~~C~~pkp~~~~~~~~~~~~~~~~~~~~~g~-~~f~~~~g~W~C~--~C~~~N~a~~~ 80 (92)
T 3gj8_B 4 GSVGSWECPVCCVSNKAEDSRCVSCTSEKPGLVSASSSNSVPVSLPSGGCLGL-DKFKKPEGSWDCE--VCLVQNKADST 80 (92)
T ss_dssp -------------------------------------------------------------CCEECT--TTCCEECSSCS
T ss_pred CCCcCCCCCcCCCEeccccceecccCCCCCCCCCccccccCcccccccccccc-cccCCCCCcccCC--cCCcCChhhcc
Confidence 468999999999999999999999999998653211100000 00112345 5677889999999 99999999999
Q ss_pred ccccCCCCCCC
Q 039618 79 SCFKCGATKDD 89 (181)
Q Consensus 79 ~C~~C~apkp~ 89 (181)
.|+.|+++||.
T Consensus 81 ~C~~C~~pkp~ 91 (92)
T 3gj8_B 81 KCIACESAKPG 91 (92)
T ss_dssp BCTTTCCBCC-
T ss_pred cccccCCCCCC
Confidence 99999999984
No 3
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=99.25 E-value=1.2e-12 Score=96.94 Aligned_cols=86 Identities=21% Similarity=0.358 Sum_probs=26.6
Q ss_pred CCCCCcccCCCCCCCccccCCcccccCCCCCCCCCCCC---C--C---CCCCCCCcccccCCCCCCCCCCCCCCCCCccc
Q 039618 57 VRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSAGGF---G--E---GGDMPRMRGFRFGGGGSSSSSRSGWKSGDWIC 128 (181)
Q Consensus 57 ~~~GdW~C~~~~C~~~Nfa~R~~C~~C~apkp~~~~~~---g--~---~~~~~~~~g~g~g~~~~~~~~~~~~k~GDW~C 128 (181)
.....|.|. .|...|.+....|..|++||+...... + . ..........||+ .+|..++|+|+|
T Consensus 5 ~~~~~W~C~--~C~~~N~~~~~kC~aC~~pr~~~~~~~~~~~~~~~s~~~~~~~~~~~gfg-------d~fk~~~g~W~C 75 (98)
T 3gj7_B 5 SAGSSWQCD--TCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFG-------DKFKPAIGTWDC 75 (98)
T ss_dssp ---------------------------------------------------------------------------CCEEC
T ss_pred CCCCcccCC--ccccCChhhcccccccCCCCCCCcccccccCccCcccccccccccccchh-------hccCCCCCcccC
Confidence 345789999 999999999999999999998543110 0 0 0001112234555 456778999999
Q ss_pred CCCCccchhhhhhhccccCCCcCC
Q 039618 129 TLGLVAMSTILQAEQNVLDAVHQG 152 (181)
Q Consensus 129 ~~C~~~N~~a~r~~Cn~c~~~~~g 152 (181)
..|.++| ++...+|.+|+++|+|
T Consensus 76 ~~C~~~N-~~~~~~C~aC~tpkPg 98 (98)
T 3gj7_B 76 DTCLVQN-KPEAVKCVACETPKPG 98 (98)
T ss_dssp TTTCCEE-CTTCSBCTTTCCBCC-
T ss_pred CcCcCCC-hhhcceecccCCCCCC
Confidence 9999999 9999999999999986
No 4
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=99.18 E-value=1.8e-11 Score=78.62 Aligned_cols=37 Identities=43% Similarity=0.902 Sum_probs=33.7
Q ss_pred CCCCCCCCcccCCCCCCCccccCCcccccCCCCCCCC
Q 039618 54 GPDVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDS 90 (181)
Q Consensus 54 ~~~~~~GdW~C~~~~C~~~Nfa~R~~C~~C~apkp~~ 90 (181)
....++|||+|+++.|+++||++|+.|++|++||+++
T Consensus 7 ~~~~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~ 43 (45)
T 1n0z_A 7 NFRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG 43 (45)
T ss_dssp SCSSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred cCCCCCCCcCCCCCCCCCEEccccccccccCCcCCCC
Confidence 3567899999998899999999999999999999864
No 5
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=99.12 E-value=2.4e-11 Score=72.77 Aligned_cols=31 Identities=35% Similarity=0.845 Sum_probs=28.8
Q ss_pred CCCCceEcCCCCccceeccccccccCCCCCC
Q 039618 2 SRPGDWNCRSCNHLNFQRRDSCQRCGEPRAG 32 (181)
Q Consensus 2 ~k~GdW~C~~C~~~Nfa~r~~C~~C~~pkp~ 32 (181)
+|+|||+|+.|+++||++|..|++|++||+.
T Consensus 1 pk~gDW~C~~C~~~Nfa~r~~C~~C~~pr~~ 31 (32)
T 2lk0_A 1 XKFEDWLCNKCCLNNFRKRLKCFRCGADKFD 31 (32)
T ss_dssp -CCSEEECTTTCCEEETTCCBCTTTCCBTTC
T ss_pred CCCCCCCcCcCcCCcChhcceecCCCCcCCC
Confidence 5889999999999999999999999999975
No 6
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=99.10 E-value=5.2e-11 Score=71.74 Aligned_cols=31 Identities=35% Similarity=0.804 Sum_probs=28.9
Q ss_pred CCCCCcccCCCCCCCccccCCcccccCCCCCCC
Q 039618 57 VRPGDWYCSVGNCGAHNFASRSSCFKCGATKDD 89 (181)
Q Consensus 57 ~~~GdW~C~~~~C~~~Nfa~R~~C~~C~apkp~ 89 (181)
.++|||+|+ .|+++||++|+.|++|++||+.
T Consensus 2 ~~~gDW~C~--~C~~~Nfa~R~~C~~C~~pk~~ 32 (33)
T 2k1p_A 2 SSANDWQCK--TCSNVNWARRSECNMCNTPKYA 32 (33)
T ss_dssp CSSSSCBCS--SSCCBCCTTCSBCSSSCCBTTC
T ss_pred CCCCCcccC--CCCCccccccccccccCCcCCC
Confidence 468999999 9999999999999999999974
No 7
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=99.06 E-value=3.8e-11 Score=88.76 Aligned_cols=83 Identities=22% Similarity=0.462 Sum_probs=26.5
Q ss_pred CCceEcCCCCccceeccccccccCCCCCCCCCCC--CCCCC------CCCCCCCCCCCCCCCCCCCcccCCCCCCCcccc
Q 039618 4 PGDWNCRSCNHLNFQRRDSCQRCGEPRAGDRSGD--YGSFG------GRGSSSFGFSTGPDVRPGDWYCSVGNCGAHNFA 75 (181)
Q Consensus 4 ~GdW~C~~C~~~Nfa~r~~C~~C~~pkp~~~~~~--~~~~g------g~~~~~~g~~~~~~~~~GdW~C~~~~C~~~Nfa 75 (181)
..+|.|..|.++|.+...+|..|++||+...... .+... .......||++.+..+.|.|.|. .|.++|.+
T Consensus 7 ~~~W~C~~C~~~N~~~~~kC~aC~~pr~~~~~~~~~~~~~~~s~~~~~~~~~~~gfgd~fk~~~g~W~C~--~C~~~N~~ 84 (98)
T 3gj7_B 7 GSSWQCDTCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFGDKFKPAIGTWDCD--TCLVQNKP 84 (98)
T ss_dssp ----------------------------------------------------------------CCEECT--TTCCEECT
T ss_pred CCcccCCccccCChhhcccccccCCCCCCCcccccccCccCcccccccccccccchhhccCCCCCcccCC--cCcCCChh
Confidence 4689999999999999999999999998542110 00000 00112356777788899999999 99999999
Q ss_pred CCcccccCCCCCC
Q 039618 76 SRSSCFKCGATKD 88 (181)
Q Consensus 76 ~R~~C~~C~apkp 88 (181)
....|..|++|||
T Consensus 85 ~~~~C~aC~tpkP 97 (98)
T 3gj7_B 85 EAVKCVACETPKP 97 (98)
T ss_dssp TCSBCTTTCCBCC
T ss_pred hcceecccCCCCC
Confidence 9999999999997
No 8
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=99.06 E-value=4.6e-11 Score=71.54 Aligned_cols=30 Identities=47% Similarity=1.085 Sum_probs=28.4
Q ss_pred CCCCcccCCCCCCCccccCCcccccCCCCCCC
Q 039618 58 RPGDWYCSVGNCGAHNFASRSSCFKCGATKDD 89 (181)
Q Consensus 58 ~~GdW~C~~~~C~~~Nfa~R~~C~~C~apkp~ 89 (181)
++|||+|+ .|+++||++|..|++|++||++
T Consensus 2 k~gDW~C~--~C~~~Nfa~r~~C~~C~~pr~~ 31 (32)
T 2lk0_A 2 KFEDWLCN--KCCLNNFRKRLKCFRCGADKFD 31 (32)
T ss_dssp CCSEEECT--TTCCEEETTCCBCTTTCCBTTC
T ss_pred CCCCCCcC--cCcCCcChhcceecCCCCcCCC
Confidence 67999998 8999999999999999999985
No 9
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=99.04 E-value=7.5e-11 Score=71.04 Aligned_cols=31 Identities=35% Similarity=1.091 Sum_probs=29.2
Q ss_pred CCCCceEcCCCCccceeccccccccCCCCCC
Q 039618 2 SRPGDWNCRSCNHLNFQRRDSCQRCGEPRAG 32 (181)
Q Consensus 2 ~k~GdW~C~~C~~~Nfa~r~~C~~C~~pkp~ 32 (181)
.++|||+|+.|+++||++|..|++|++||+.
T Consensus 2 ~~~gDW~C~~C~~~Nfa~R~~C~~C~~pk~~ 32 (33)
T 2k1p_A 2 SSANDWQCKTCSNVNWARRSECNMCNTPKYA 32 (33)
T ss_dssp CSSSSCBCSSSCCBCCTTCSBCSSSCCBTTC
T ss_pred CCCCCcccCCCCCccccccccccccCCcCCC
Confidence 4789999999999999999999999999975
No 10
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=98.88 E-value=7.3e-10 Score=71.13 Aligned_cols=32 Identities=44% Similarity=1.103 Sum_probs=29.5
Q ss_pred CCCCceEcC--CCCccceeccccccccCCCCCCC
Q 039618 2 SRPGDWNCR--SCNHLNFQRRDSCQRCGEPRAGD 33 (181)
Q Consensus 2 ~k~GdW~C~--~C~~~Nfa~r~~C~~C~~pkp~~ 33 (181)
.++|||+|+ .|+++||++|+.|++|++||+.+
T Consensus 10 ~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~ 43 (45)
T 1n0z_A 10 VSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG 43 (45)
T ss_dssp SCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred CCCCCcCCCCCCCCCEEccccccccccCCcCCCC
Confidence 368999999 89999999999999999999864
No 11
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=98.66 E-value=5e-09 Score=63.56 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=25.7
Q ss_pred CCCCCcccCCCCccchhhhhhhccccCCCcCCc
Q 039618 121 WKSGDWICTLGLVAMSTILQAEQNVLDAVHQGI 153 (181)
Q Consensus 121 ~k~GDW~C~~C~~~N~~a~r~~Cn~c~~~~~g~ 153 (181)
+++|+|+|+.|+++| .+...+|.+|+++|+|.
T Consensus 3 ~~~G~W~C~~C~v~N-~~~~~kC~aCet~Kpgt 34 (34)
T 3gj5_B 3 LGSGSWDCEVCLVQN-KADSTKCIACESAKPGT 34 (34)
T ss_dssp ---CCEECTTTCCEE-CSSCSBCTTTCCBC---
T ss_pred CCCCceECCeeEeEC-ccccCEEcccCCcCCCC
Confidence 579999999999999 99999999999999974
No 12
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=2.8e-08 Score=64.34 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=38.3
Q ss_pred CCCCCCCCcccCCCCccchhhhhhhccccCCCcCCceeeceeee
Q 039618 118 RSGWKSGDWICTLGLVAMSTILQAEQNVLDAVHQGILQATSFRI 161 (181)
Q Consensus 118 ~~~~k~GDW~C~~C~~~N~~a~r~~Cn~c~~~~~g~~~~~~~~~ 161 (181)
+...++|.|+|+.|.++| .+.+.+|.+|++||++......+.|
T Consensus 4 ~~~~~~g~W~C~~C~v~N-~a~~~kC~aCetpKpgs~~~~~l~~ 46 (47)
T 2ebq_A 4 GSSGVIGTWDCDTCLVQN-KPEAIKCVACETPKPGTCVKRALTL 46 (47)
T ss_dssp SCCCCSSSEECSSSCCEE-CSSCSBCSSSCCBCSCSSCGGGSCC
T ss_pred CcCCCCCceECCeeeccC-ccCCceecCcCCCCCCCccCccccC
Confidence 345678999999999999 9999999999999999988877755
No 13
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=98.55 E-value=1.8e-08 Score=60.70 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=26.5
Q ss_pred CCCCCcccCCCCccchhhhhhhccccCCCcCC
Q 039618 121 WKSGDWICTLGLVAMSTILQAEQNVLDAVHQG 152 (181)
Q Consensus 121 ~k~GDW~C~~C~~~N~~a~r~~Cn~c~~~~~g 152 (181)
.++|+|+|+.|.++| ++...+|++|+++|+|
T Consensus 3 ~~~g~W~C~~C~~~N-~~~~~kC~aC~tpkPg 33 (33)
T 3gj3_B 3 LGSGTWDCDTCLVQN-KPEAVKCVACETPKPG 33 (33)
T ss_dssp ---CCEECTTTCCEE-CTTCSBCTTTCCBCC-
T ss_pred CCCCceeCCcccCCC-ccccCEEcccCCCCCC
Confidence 368999999999999 9999999999999986
No 14
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=4.2e-08 Score=63.50 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=34.7
Q ss_pred CCCCCCCCCcccCCCCccchhhhhhhccccCCCcCCcee
Q 039618 117 SRSGWKSGDWICTLGLVAMSTILQAEQNVLDAVHQGILQ 155 (181)
Q Consensus 117 ~~~~~k~GDW~C~~C~~~N~~a~r~~Cn~c~~~~~g~~~ 155 (181)
.++.+++|.|.|+.|+++| .+.+.+|.+|++|+++...
T Consensus 3 ~~fk~~~gsW~C~~C~v~N-~a~~~kC~aC~~pkpg~~p 40 (47)
T 2ebr_A 3 SGSSGPEGSWDCELCLVQN-KADSTKCLACESAKPGTKS 40 (47)
T ss_dssp SSCSSCCSSCCCSSSCCCC-CSSCSBCSSSCCBCCCCCS
T ss_pred ccccCCCCeeECCeeecCC-cCCcceecCcCCCCCCCcc
Confidence 4677889999999999999 9999999999999999864
No 15
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=1.6e-07 Score=63.03 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=32.9
Q ss_pred CCCCCCCCCcccCCCCccchhhhhhhccccCCCcCC
Q 039618 117 SRSGWKSGDWICTLGLVAMSTILQAEQNVLDAVHQG 152 (181)
Q Consensus 117 ~~~~~k~GDW~C~~C~~~N~~a~r~~Cn~c~~~~~g 152 (181)
..|.+++|.|.|+.|+++| .+...+|.+|+++|+|
T Consensus 23 ~~FK~~~GsWeC~~C~V~N-~a~~~kC~ACetpKPG 57 (57)
T 2ebv_A 23 DKFKRPIGSWECSVCCVSN-NAEDNKCVSCMSEKPG 57 (57)
T ss_dssp SCCCCCSSSCCCSSSCCCC-CSSCSBCSSSCCBCCC
T ss_pred HhcCCCCCeeeCCeeEccC-ccCCceeeEcCCcCCC
Confidence 5788899999999999999 9999999999999986
No 16
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=98.22 E-value=4.8e-07 Score=54.76 Aligned_cols=31 Identities=26% Similarity=0.713 Sum_probs=25.8
Q ss_pred CCCCceEcCCCCccceeccccccccCCCCCC
Q 039618 2 SRPGDWNCRSCNHLNFQRRDSCQRCGEPRAG 32 (181)
Q Consensus 2 ~k~GdW~C~~C~~~Nfa~r~~C~~C~~pkp~ 32 (181)
.++|+|+|..|.++|.+...+|..|.+|||.
T Consensus 3 ~~~G~W~C~~C~v~N~~~~~kC~aCet~Kpg 33 (34)
T 3gj5_B 3 LGSGSWDCEVCLVQNKADSTKCIACESAKPG 33 (34)
T ss_dssp ---CCEECTTTCCEECSSCSBCTTTCCBC--
T ss_pred CCCCceECCeeEeECccccCEEcccCCcCCC
Confidence 3679999999999999999999999999985
No 17
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=98.12 E-value=1.1e-06 Score=52.88 Aligned_cols=30 Identities=30% Similarity=0.828 Sum_probs=26.5
Q ss_pred CCCceEcCCCCccceeccccccccCCCCCC
Q 039618 3 RPGDWNCRSCNHLNFQRRDSCQRCGEPRAG 32 (181)
Q Consensus 3 k~GdW~C~~C~~~Nfa~r~~C~~C~~pkp~ 32 (181)
++|+|+|+.|.++|.+...+|..|.+|||.
T Consensus 4 ~~g~W~C~~C~~~N~~~~~kC~aC~tpkPg 33 (33)
T 3gj3_B 4 GSGTWDCDTCLVQNKPEAVKCVACETPKPG 33 (33)
T ss_dssp --CCEECTTTCCEECTTCSBCTTTCCBCC-
T ss_pred CCCceeCCcccCCCccccCEEcccCCCCCC
Confidence 579999999999999999999999999973
No 18
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=2.1e-06 Score=55.46 Aligned_cols=34 Identities=26% Similarity=0.651 Sum_probs=31.0
Q ss_pred CCCCCceEcCCCCccceeccccccccCCCCCCCC
Q 039618 1 MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRAGDR 34 (181)
Q Consensus 1 ~~k~GdW~C~~C~~~Nfa~r~~C~~C~~pkp~~~ 34 (181)
++++|.|.|..|.+.|.+...+|+.|++||+...
T Consensus 6 ~~~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs~ 39 (47)
T 2ebq_A 6 SGVIGTWDCDTCLVQNKPEAIKCVACETPKPGTC 39 (47)
T ss_dssp CCCSSSEECSSSCCEECSSCSBCSSSCCBCSCSS
T ss_pred CCCCCceECCeeeccCccCCceecCcCCCCCCCc
Confidence 4678999999999999999999999999998753
No 19
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=1.1e-05 Score=52.01 Aligned_cols=36 Identities=28% Similarity=0.671 Sum_probs=32.6
Q ss_pred CCCCCCCCcccCCCCCCCccccCCcccccCCCCCCCCC
Q 039618 54 GPDVRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSA 91 (181)
Q Consensus 54 ~~~~~~GdW~C~~~~C~~~Nfa~R~~C~~C~apkp~~~ 91 (181)
.+...+|.|.|. .|.+.|.+.+..|..|++|||...
T Consensus 4 ~fk~~~gsW~C~--~C~v~N~a~~~kC~aC~~pkpg~~ 39 (47)
T 2ebr_A 4 GSSGPEGSWDCE--LCLVQNKADSTKCLACESAKPGTK 39 (47)
T ss_dssp SCSSCCSSCCCS--SSCCCCCSSCSBCSSSCCBCCCCC
T ss_pred cccCCCCeeECC--eeecCCcCCcceecCcCCCCCCCc
Confidence 466788999999 999999999999999999999754
No 20
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=2.1e-05 Score=52.67 Aligned_cols=39 Identities=31% Similarity=0.635 Sum_probs=36.0
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCCccccCCcccccCCCCCC
Q 039618 48 SFGFSTGPDVRPGDWYCSVGNCGAHNFASRSSCFKCGATKD 88 (181)
Q Consensus 48 ~~g~~~~~~~~~GdW~C~~~~C~~~Nfa~R~~C~~C~apkp 88 (181)
..||+..+..+.|.|.|. .|.+.|.+....|..|++|||
T Consensus 18 ~~gfg~~FK~~~GsWeC~--~C~V~N~a~~~kC~ACetpKP 56 (57)
T 2ebv_A 18 TLGFGDKFKRPIGSWECS--VCCVSNNAEDNKCVSCMSEKP 56 (57)
T ss_dssp CCSCCSCCCCCSSSCCCS--SSCCCCCSSCSBCSSSCCBCC
T ss_pred CCCHHHhcCCCCCeeeCC--eeEccCccCCceeeEcCCcCC
Confidence 346778899999999999 999999999999999999997
No 21
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.26 E-value=0.00017 Score=47.41 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=30.0
Q ss_pred CCCCCCCcccCCCCccchhhhhhhccccCCCcCCc
Q 039618 119 SGWKSGDWICTLGLVAMSTILQAEQNVLDAVHQGI 153 (181)
Q Consensus 119 ~~~k~GDW~C~~C~~~N~~a~r~~Cn~c~~~~~g~ 153 (181)
....++.|.|+.|..+| ++...+|.+|..++++.
T Consensus 5 ~~~~~~~W~C~~CT~~N-~~~~~~C~~C~~pr~~s 38 (53)
T 2d9g_A 5 SSGDEGYWDCSVCTFRN-SAEAFKCMMCDVRKGTS 38 (53)
T ss_dssp CSSCCCCEECSSSCCEE-CSSCSSCSSSCCCCCCC
T ss_pred CCCCCCCcCCCCCccCC-CCCCCccCCCCCcCCcc
Confidence 34567899999999999 99999999999999863
No 22
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.70 E-value=0.0045 Score=40.48 Aligned_cols=33 Identities=33% Similarity=0.616 Sum_probs=29.5
Q ss_pred CCCCCcccCCCCCCCccccCCcccccCCCCCCCCC
Q 039618 57 VRPGDWYCSVGNCGAHNFASRSSCFKCGATKDDSA 91 (181)
Q Consensus 57 ~~~GdW~C~~~~C~~~Nfa~R~~C~~C~apkp~~~ 91 (181)
..++.|.|+ .|.++|......|.+|..||+...
T Consensus 7 ~~~~~W~C~--~CT~~N~~~~~~C~~C~~pr~~s~ 39 (53)
T 2d9g_A 7 GDEGYWDCS--VCTFRNSAEAFKCMMCDVRKGTST 39 (53)
T ss_dssp SCCCCEECS--SSCCEECSSCSSCSSSCCCCCCCC
T ss_pred CCCCCcCCC--CCccCCCCCCCccCCCCCcCCccc
Confidence 456789999 999999999999999999998644
No 23
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=95.82 E-value=0.005 Score=36.35 Aligned_cols=28 Identities=36% Similarity=0.924 Sum_probs=25.8
Q ss_pred CCceEcCCCCccceeccccccccCCCCC
Q 039618 4 PGDWNCRSCNHLNFQRRDSCQRCGEPRA 31 (181)
Q Consensus 4 ~GdW~C~~C~~~Nfa~r~~C~~C~~pkp 31 (181)
...|.|+.|-++|......|..|..||+
T Consensus 6 ~~~W~C~~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 6 GAQWNCTACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred CCcCCCCCCccccCCCCCeeCCCCCcCc
Confidence 3589999999999999999999999985
No 24
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=95.49 E-value=0.0086 Score=34.60 Aligned_cols=27 Identities=30% Similarity=0.887 Sum_probs=25.2
Q ss_pred CCceEcCCCCccceeccccccccCCCC
Q 039618 4 PGDWNCRSCNHLNFQRRDSCQRCGEPR 30 (181)
Q Consensus 4 ~GdW~C~~C~~~Nfa~r~~C~~C~~pk 30 (181)
...|.|+.|-++|......|..|+.|+
T Consensus 4 ~~~W~C~~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 4 SAMWACQHCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp SCCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred CccccCCcccccCCCCCCccCCcCCCC
Confidence 458999999999999999999999987
No 25
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=95.06 E-value=0.015 Score=34.20 Aligned_cols=28 Identities=21% Similarity=0.651 Sum_probs=25.8
Q ss_pred CCCcccCCCCCCCccccCCcccccCCCCCC
Q 039618 59 PGDWYCSVGNCGAHNFASRSSCFKCGATKD 88 (181)
Q Consensus 59 ~GdW~C~~~~C~~~Nfa~R~~C~~C~apkp 88 (181)
...|.|+ .|..+|......|..|..+++
T Consensus 6 ~~~W~C~--~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 6 GAQWNCT--ACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCCEECT--TTCCEECTTCSBCTTTCCBSC
T ss_pred CCcCCCC--CCccccCCCCCeeCCCCCcCc
Confidence 4589999 999999999999999999985
No 26
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=94.91 E-value=0.023 Score=32.71 Aligned_cols=27 Identities=22% Similarity=0.632 Sum_probs=24.9
Q ss_pred CCCcccCCCCCCCccccCCcccccCCCCC
Q 039618 59 PGDWYCSVGNCGAHNFASRSSCFKCGATK 87 (181)
Q Consensus 59 ~GdW~C~~~~C~~~Nfa~R~~C~~C~apk 87 (181)
...|.|+ .|..+|......|..|+.++
T Consensus 4 ~~~W~C~--~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 4 SAMWACQ--HCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp SCCEECS--SSCCEECSSCSSCSSSCCCC
T ss_pred CccccCC--cccccCCCCCCccCCcCCCC
Confidence 3589999 99999999999999999987
No 27
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=93.87 E-value=0.03 Score=36.46 Aligned_cols=29 Identities=28% Similarity=0.776 Sum_probs=26.9
Q ss_pred CceEcCCCCccceeccccccccCCCCCCC
Q 039618 5 GDWNCRSCNHLNFQRRDSCQRCGEPRAGD 33 (181)
Q Consensus 5 GdW~C~~C~~~Nfa~r~~C~~C~~pkp~~ 33 (181)
..|.|+.|-++|-.....|..|..+++..
T Consensus 9 ~~W~Cp~CTf~N~p~~~~CemC~~prp~~ 37 (52)
T 2crc_A 9 VGWQCPGCTFINKPTRPGCEMCCRARPEA 37 (52)
T ss_dssp SSBCCTTTCCCBCTTCSSCSSSCCCCCTT
T ss_pred CCccCCCcccccCCCCCeeCCCCCcCCcc
Confidence 48999999999999999999999999864
No 28
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=93.82 E-value=0.019 Score=36.64 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=30.5
Q ss_pred CCCcccCCCCccchhhhhhhccccCCCcCCceeece
Q 039618 123 SGDWICTLGLVAMSTILQAEQNVLDAVHQGILQATS 158 (181)
Q Consensus 123 ~GDW~C~~C~~~N~~a~r~~Cn~c~~~~~g~~~~~~ 158 (181)
++.|+|+.|...| -+..-.|.+|-+.+.+=+..+|
T Consensus 11 ~D~WkC~~C~~~N-~Pl~r~C~rCw~LRk~Wlp~~~ 45 (46)
T 2c6a_A 11 ADYWKCTSCNEMN-PPLPSHCNRCWALRENWLPEDK 45 (46)
T ss_dssp GGCEECTTTCCEE-CSSCSSCTTTCCCCSSCSCCCC
T ss_pred cceEecccccccC-CCccchhhHHHhhccccCCccc
Confidence 3899999999999 7889999999999988776654
No 29
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=92.84 E-value=0.14 Score=33.24 Aligned_cols=30 Identities=27% Similarity=0.716 Sum_probs=27.2
Q ss_pred CCCcccCCCCCCCccccCCcccccCCCCCCCC
Q 039618 59 PGDWYCSVGNCGAHNFASRSSCFKCGATKDDS 90 (181)
Q Consensus 59 ~GdW~C~~~~C~~~Nfa~R~~C~~C~apkp~~ 90 (181)
...|.|+ .|..+|-.....|.+|..+++..
T Consensus 8 ~~~W~Cp--~CTf~N~p~~~~CemC~~prp~~ 37 (52)
T 2crc_A 8 PVGWQCP--GCTFINKPTRPGCEMCCRARPEA 37 (52)
T ss_dssp SSSBCCT--TTCCCBCTTCSSCSSSCCCCCTT
T ss_pred CCCccCC--CcccccCCCCCeeCCCCCcCCcc
Confidence 3489999 99999999999999999999864
No 30
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=92.46 E-value=0.071 Score=36.18 Aligned_cols=29 Identities=28% Similarity=0.779 Sum_probs=26.9
Q ss_pred CceEcCCCCccceeccccccccCCCCCCC
Q 039618 5 GDWNCRSCNHLNFQRRDSCQRCGEPRAGD 33 (181)
Q Consensus 5 GdW~C~~C~~~Nfa~r~~C~~C~~pkp~~ 33 (181)
..|.|+.|-+.|......|..|..+++..
T Consensus 7 ~~W~CP~CTf~N~p~~p~CEmC~~prp~~ 35 (64)
T 3b08_B 7 VGWQCPGCTFINKPTRPGCEMCCRARPET 35 (64)
T ss_dssp CSEECTTTCCEECTTCSBCTTTCCBCCSS
T ss_pred CCCcCCCccccCCCCCCccCcCCCCCCcc
Confidence 48999999999999999999999999864
No 31
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=89.55 E-value=0.2 Score=31.81 Aligned_cols=28 Identities=36% Similarity=0.814 Sum_probs=25.4
Q ss_pred CCceEcCCCCccceeccccccccCCCCC
Q 039618 4 PGDWNCRSCNHLNFQRRDSCQRCGEPRA 31 (181)
Q Consensus 4 ~GdW~C~~C~~~Nfa~r~~C~~C~~pkp 31 (181)
...|.|+.|...|......|++|-+-|.
T Consensus 11 ~D~WkC~~C~~~N~Pl~r~C~rCw~LRk 38 (46)
T 2c6a_A 11 ADYWKCTSCNEMNPPLPSHCNRCWALRE 38 (46)
T ss_dssp GGCEECTTTCCEECSSCSSCTTTCCCCS
T ss_pred cceEecccccccCCCccchhhHHHhhcc
Confidence 3579999999999999999999998874
No 32
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=89.11 E-value=0.27 Score=33.29 Aligned_cols=30 Identities=27% Similarity=0.720 Sum_probs=27.1
Q ss_pred CCCcccCCCCCCCccccCCcccccCCCCCCCC
Q 039618 59 PGDWYCSVGNCGAHNFASRSSCFKCGATKDDS 90 (181)
Q Consensus 59 ~GdW~C~~~~C~~~Nfa~R~~C~~C~apkp~~ 90 (181)
.-.|.|+ .|.++|-.....|..|+.+++..
T Consensus 6 ~~~W~CP--~CTf~N~p~~p~CEmC~~prp~~ 35 (64)
T 3b08_B 6 PVGWQCP--GCTFINKPTRPGCEMCCRARPET 35 (64)
T ss_dssp CCSEECT--TTCCEECTTCSBCTTTCCBCCSS
T ss_pred CCCCcCC--CccccCCCCCCccCcCCCCCCcc
Confidence 4579999 99999999999999999999854
No 33
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=84.22 E-value=0.2 Score=46.72 Aligned_cols=82 Identities=17% Similarity=0.326 Sum_probs=0.0
Q ss_pred CCceEcCCCCccceec---------cccccccCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCcc
Q 039618 4 PGDWNCRSCNHLNFQR---------RDSCQRCGEPRAGDRSGDY-GSFGGRGSSSFGFSTGPDVRPGDWYCSVGNCGAHN 73 (181)
Q Consensus 4 ~GdW~C~~C~~~Nfa~---------r~~C~~C~~pkp~~~~~~~-~~~gg~~~~~~g~~~~~~~~~GdW~C~~~~C~~~N 73 (181)
...|+|+-|.+.|-.. .-.|..|+.+.+....... .....+.... ..........+-.|+ .|-++|
T Consensus 115 ~~tWvC~ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~~k~~i~~~~~~~~~~--~~~~~~~~~~~~~CP--~CTF~N 190 (566)
T 1w7p_D 115 VSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAIDPNA--NPQNQFGVNSENICP--ACTFAN 190 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccceeccccccCCCCCCCCCcccCCCCcccccCCCCchhhhhhhhhccccCCCcc--cCccccccccCCCCC--cccccC
Confidence 3589999999999852 2358899988653321100 0000000000 000011112456798 999999
Q ss_pred ccCCcccccCCCCCCC
Q 039618 74 FASRSSCFKCGATKDD 89 (181)
Q Consensus 74 fa~R~~C~~C~apkp~ 89 (181)
-.+-..|..|+++-+.
T Consensus 191 HPsl~~CEiCg~~L~~ 206 (566)
T 1w7p_D 191 HPQIGNCEICGHRLPN 206 (566)
T ss_dssp ----------------
T ss_pred ChhhhcccccCCcCCC
Confidence 9999999999998876
No 34
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=79.88 E-value=1.4 Score=28.55 Aligned_cols=38 Identities=13% Similarity=-0.023 Sum_probs=32.3
Q ss_pred CCCcccCCCCccchhhhhhhccccCCCcCCceeeceeee
Q 039618 123 SGDWICTLGLVAMSTILQAEQNVLDAVHQGILQATSFRI 161 (181)
Q Consensus 123 ~GDW~C~~C~~~N~~a~r~~Cn~c~~~~~g~~~~~~~~~ 161 (181)
+.-|.|+.|...| -+..--|.+|-+.+.+-+..++--.
T Consensus 9 eD~WkC~~C~k~N-~Pl~ryC~rCwaLRk~Wlpd~~k~~ 46 (53)
T 2cr8_A 9 EDEWQCTECKKFN-SPSKRYCFRCWALRKDWYSDCSKLT 46 (53)
T ss_dssp SCCEECSSSCCEE-CSSCCBCTTTCCBCCCCCCCCCCCS
T ss_pred cceeecccccccC-CCccchhHHHHHhhcccCCCcccCc
Confidence 5779999999999 6778899999999998888776443
No 35
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=76.63 E-value=1.5 Score=28.44 Aligned_cols=27 Identities=30% Similarity=0.843 Sum_probs=24.5
Q ss_pred CceEcCCCCccceeccccccccCCCCC
Q 039618 5 GDWNCRSCNHLNFQRRDSCQRCGEPRA 31 (181)
Q Consensus 5 GdW~C~~C~~~Nfa~r~~C~~C~~pkp 31 (181)
.-|.|+.|...|-.-...|.+|-+-|.
T Consensus 10 D~WkC~~C~k~N~Pl~ryC~rCwaLRk 36 (53)
T 2cr8_A 10 DEWQCTECKKFNSPSKRYCFRCWALRK 36 (53)
T ss_dssp CCEECSSSCCEECSSCCBCTTTCCBCC
T ss_pred ceeecccccccCCCccchhHHHHHhhc
Confidence 469999999999999999999998774
No 36
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=72.21 E-value=6.1 Score=27.69 Aligned_cols=17 Identities=53% Similarity=1.081 Sum_probs=12.8
Q ss_pred CCCCCCCCCcccCCCCCCC
Q 039618 53 TGPDVRPGDWYCSVGNCGA 71 (181)
Q Consensus 53 ~~~~~~~GdW~C~~~~C~~ 71 (181)
+.+...+.||.|+ .|+.
T Consensus 52 T~fedlPddW~CP--vCga 68 (81)
T 2kn9_A 52 TRWDDIPDDWSCP--DCGA 68 (81)
T ss_dssp CCTTTSCTTCCCT--TTCC
T ss_pred CChhHCCCCCcCC--CCCC
Confidence 3466778999998 6664
No 37
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=68.28 E-value=2.2 Score=28.06 Aligned_cols=24 Identities=38% Similarity=0.786 Sum_probs=21.9
Q ss_pred ceEcCCCCccceeccccccccCCC
Q 039618 6 DWNCRSCNHLNFQRRDSCQRCGEP 29 (181)
Q Consensus 6 dW~C~~C~~~Nfa~r~~C~~C~~p 29 (181)
-++|-.|...|-.+.+.|.+|+..
T Consensus 19 k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 19 KKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp CEEETTTCCEECTTCSSCTTTCCC
T ss_pred hhhhccccCcCCcccccccCCCCC
Confidence 579999999999999999999864
No 38
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=67.62 E-value=1.1 Score=26.36 Aligned_cols=15 Identities=27% Similarity=0.672 Sum_probs=12.0
Q ss_pred CCCCCCCcccCCCCc
Q 039618 119 SGWKSGDWICTLGLV 133 (181)
Q Consensus 119 ~~~k~GDW~C~~C~~ 133 (181)
+..++|||-|-+|--
T Consensus 12 pnpregdwcchkcvp 26 (36)
T 4b2u_A 12 PNPREGDWCCHKCVP 26 (36)
T ss_dssp CCGGGCCSSSSEEEE
T ss_pred cCCCccCeeeecccc
Confidence 457899999999853
No 39
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=64.50 E-value=6.6 Score=26.60 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=12.0
Q ss_pred CCCCCCCCcccCCCCCCC
Q 039618 54 GPDVRPGDWYCSVGNCGA 71 (181)
Q Consensus 54 ~~~~~~GdW~C~~~~C~~ 71 (181)
.+...+.||.|+ .|+.
T Consensus 33 ~f~~lPddw~CP--~Cga 48 (70)
T 1dx8_A 33 PFVDLSDSFMCP--ACRS 48 (70)
T ss_dssp CGGGSCTTCBCT--TTCC
T ss_pred chhhCCCCCcCC--CCCC
Confidence 456678999998 6665
No 40
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=63.29 E-value=2.6 Score=26.43 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=12.9
Q ss_pred CCCCCCCcccCCCCccc
Q 039618 119 SGWKSGDWICTLGLVAM 135 (181)
Q Consensus 119 ~~~k~GDW~C~~C~~~N 135 (181)
+..-+.||.|+.|+..-
T Consensus 24 f~~lP~dw~CP~Cg~~k 40 (46)
T 6rxn_A 24 FDQLPDDWCCPVCGVSK 40 (46)
T ss_dssp GGGSCTTCBCTTTCCBG
T ss_pred hhhCCCCCcCcCCCCcH
Confidence 33447899999999754
No 41
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=62.02 E-value=2.5 Score=33.08 Aligned_cols=33 Identities=12% Similarity=0.053 Sum_probs=23.9
Q ss_pred CCCcccCCCCccchhhhhhhccccCCCcCCcee
Q 039618 123 SGDWICTLGLVAMSTILQAEQNVLDAVHQGILQ 155 (181)
Q Consensus 123 ~GDW~C~~C~~~N~~a~r~~Cn~c~~~~~g~~~ 155 (181)
+--|+|+.||.+.-..-...|.+|.+|+.-.++
T Consensus 136 ~~~~~C~~CG~i~~~~~p~~CP~Cg~~~~~F~~ 168 (170)
T 3pwf_A 136 KKVYICPICGYTAVDEAPEYCPVCGAPKEKFVV 168 (170)
T ss_dssp SCEEECTTTCCEEESCCCSBCTTTCCBGGGCEE
T ss_pred CCeeEeCCCCCeeCCCCCCCCCCCCCCHHHcee
Confidence 456999999998722223599999998765443
No 42
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=59.66 E-value=5.7 Score=25.37 Aligned_cols=18 Identities=17% Similarity=0.374 Sum_probs=14.1
Q ss_pred CCCCCCCCCcccCCCCcc
Q 039618 117 SRSGWKSGDWICTLGLVA 134 (181)
Q Consensus 117 ~~~~~k~GDW~C~~C~~~ 134 (181)
.++..-+.||.|+.|+..
T Consensus 28 t~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 28 TKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp CCTTSSCTTCCCSSSCCC
T ss_pred CchHHCCCCCcCCCCCCc
Confidence 345566899999999974
No 43
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=59.66 E-value=1.5 Score=30.61 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=28.6
Q ss_pred CCCcccCCCCccchh--------hhhhhccccCCCcCCceeeceeee
Q 039618 123 SGDWICTLGLVAMST--------ILQAEQNVLDAVHQGILQATSFRI 161 (181)
Q Consensus 123 ~GDW~C~~C~~~N~~--------a~r~~Cn~c~~~~~g~~~~~~~~~ 161 (181)
.-+|.|+.|...|.- .-...|..|.++++-.+...||..
T Consensus 15 ~~tWVCpICsfsN~v~s~fdp~~~~lPpC~aCGIkP~~~~i~~sI~~ 61 (76)
T 2j9u_B 15 VSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINC 61 (76)
T ss_dssp CEEEECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCCHHHHGGGCBC
T ss_pred ccceECccccccCcCccccCCCCCCCCcccccCccCCHHHHHHHHhc
Confidence 358999999977711 234679999988887777766665
No 44
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=59.40 E-value=5.1 Score=27.86 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=14.8
Q ss_pred CceEcCCCCccceecccc
Q 039618 5 GDWNCRSCNHLNFQRRDS 22 (181)
Q Consensus 5 GdW~C~~C~~~Nfa~r~~ 22 (181)
-+|.|+.|.+.|-+....
T Consensus 16 ~tWVCpICsfsN~v~s~f 33 (76)
T 2j9u_B 16 STWVCPICMVSNETQGEF 33 (76)
T ss_dssp EEEECTTTCCEEEESSCC
T ss_pred cceECccccccCcCcccc
Confidence 489999999999876554
No 45
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=58.92 E-value=8.3 Score=27.34 Aligned_cols=16 Identities=44% Similarity=1.109 Sum_probs=12.2
Q ss_pred CCCCCCCCcccCCCCCCC
Q 039618 54 GPDVRPGDWYCSVGNCGA 71 (181)
Q Consensus 54 ~~~~~~GdW~C~~~~C~~ 71 (181)
.+...+.||.|+ .|+.
T Consensus 61 ~fedlPddW~CP--vCga 76 (87)
T 1s24_A 61 RFEDIPDDWCCP--DCGA 76 (87)
T ss_dssp CGGGCCTTCCCS--SSCC
T ss_pred ChhHCCCCCCCC--CCCC
Confidence 456678999998 6764
No 46
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=55.48 E-value=4.8 Score=26.06 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=14.1
Q ss_pred CCCCCCCCcccCCCCccc
Q 039618 118 RSGWKSGDWICTLGLVAM 135 (181)
Q Consensus 118 ~~~~k~GDW~C~~C~~~N 135 (181)
.+.--+.||.|+.|+..-
T Consensus 29 ~fe~lP~dw~CP~Cg~~K 46 (54)
T 4rxn_A 29 DFKDIPDDWVCPLCGVGK 46 (54)
T ss_dssp CGGGSCTTCBCTTTCCBG
T ss_pred ChhHCCCCCcCcCCCCcH
Confidence 455568999999999854
No 47
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=54.70 E-value=7.2 Score=25.23 Aligned_cols=15 Identities=27% Similarity=0.625 Sum_probs=11.9
Q ss_pred CCCCCcccCCCCccc
Q 039618 121 WKSGDWICTLGLVAM 135 (181)
Q Consensus 121 ~k~GDW~C~~C~~~N 135 (181)
...|+++|..||.+-
T Consensus 26 ~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 26 YRAGDMICPECGLVV 40 (58)
T ss_dssp SSSCCEECTTTCCEE
T ss_pred CCCCeEEeCCCCCEE
Confidence 346899999998876
No 48
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=54.09 E-value=6.9 Score=27.40 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=14.7
Q ss_pred CCCCCCCCCcccCCCCccc
Q 039618 117 SRSGWKSGDWICTLGLVAM 135 (181)
Q Consensus 117 ~~~~~k~GDW~C~~C~~~N 135 (181)
.+|..-+.||.|+.|+..-
T Consensus 52 T~fedlPddW~CPvCga~K 70 (81)
T 2kn9_A 52 TRWDDIPDDWSCPDCGAAK 70 (81)
T ss_dssp CCTTTSCTTCCCTTTCCCG
T ss_pred CChhHCCCCCcCCCCCCCH
Confidence 3455668999999999854
No 49
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=53.70 E-value=5.3 Score=25.49 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=14.0
Q ss_pred CCCCCCCCcccCCCCccc
Q 039618 118 RSGWKSGDWICTLGLVAM 135 (181)
Q Consensus 118 ~~~~k~GDW~C~~C~~~N 135 (181)
++..-+.||.|+.|+..-
T Consensus 28 ~f~~lP~dw~CP~Cg~~K 45 (52)
T 1yk4_A 28 KFEDLPDDWVCPLCGAPK 45 (52)
T ss_dssp CGGGSCTTCBCTTTCCBG
T ss_pred CHhHCCCCCcCCCCCCCH
Confidence 455568999999999853
No 50
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=53.11 E-value=5.4 Score=25.77 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=14.4
Q ss_pred CCCCCCCCCcccCCCCccc
Q 039618 117 SRSGWKSGDWICTLGLVAM 135 (181)
Q Consensus 117 ~~~~~k~GDW~C~~C~~~N 135 (181)
.++..-+.||.|+.|+..-
T Consensus 28 t~f~~lP~dw~CP~Cga~K 46 (55)
T 2v3b_B 28 TRWEDIPADWVCPDCGVGK 46 (55)
T ss_dssp CCGGGSCTTCCCTTTCCCG
T ss_pred CChhHCCCCCcCCCCCCCH
Confidence 3455568999999999853
No 51
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=52.00 E-value=4.2 Score=32.61 Aligned_cols=27 Identities=4% Similarity=-0.133 Sum_probs=21.4
Q ss_pred CCcccCCCCccchhhhh-hhccccCCCcC
Q 039618 124 GDWICTLGLVAMSTILQ-AEQNVLDAVHQ 151 (181)
Q Consensus 124 GDW~C~~C~~~N~~a~r-~~Cn~c~~~~~ 151 (181)
--|.|..||.+. .... ..|-+|.+++-
T Consensus 170 ~~~~C~~CG~i~-~g~~p~~CP~C~~~k~ 197 (202)
T 1yuz_A 170 KFHLCPICGYIH-KGEDFEKCPICFRPKD 197 (202)
T ss_dssp CEEECSSSCCEE-ESSCCSBCTTTCCBGG
T ss_pred cEEEECCCCCEE-cCcCCCCCCCCCCChH
Confidence 369999999997 5433 48999999874
No 52
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=51.85 E-value=6.8 Score=25.12 Aligned_cols=25 Identities=24% Similarity=0.627 Sum_probs=22.5
Q ss_pred CceEcCCCCccceeccccccccCCC
Q 039618 5 GDWNCRSCNHLNFQRRDSCQRCGEP 29 (181)
Q Consensus 5 GdW~C~~C~~~Nfa~r~~C~~C~~p 29 (181)
...+|+.|...|-.....|..|+..
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSC
T ss_pred CCccCCCCCCcCCCCceecCCCCCc
Confidence 4678999999999999999999886
No 53
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=48.84 E-value=6.3 Score=22.49 Aligned_cols=15 Identities=33% Similarity=0.619 Sum_probs=11.6
Q ss_pred CCCCCCCcccCCCCc
Q 039618 119 SGWKSGDWICTLGLV 133 (181)
Q Consensus 119 ~~~k~GDW~C~~C~~ 133 (181)
-.-|-|||-|.+|.-
T Consensus 12 dpekmgdwccgrcir 26 (32)
T 4b2v_A 12 DPEKMGDWCCGRCIR 26 (32)
T ss_dssp CTTTTCCCCSSEEET
T ss_pred ChHHhcchhhhHHHH
Confidence 345679999999863
No 54
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=45.56 E-value=5.4 Score=31.48 Aligned_cols=27 Identities=7% Similarity=-0.065 Sum_probs=21.1
Q ss_pred CcccCCCCccchhh--hhhhccccCCCcCC
Q 039618 125 DWICTLGLVAMSTI--LQAEQNVLDAVHQG 152 (181)
Q Consensus 125 DW~C~~C~~~N~~a--~r~~Cn~c~~~~~g 152 (181)
-|.|+.||.+. .. ....|-+|.+++.-
T Consensus 155 ~~~C~~CG~~~-~g~~~p~~CP~C~~~k~~ 183 (191)
T 1lko_A 155 KWRCRNCGYVH-EGTGAPELCPACAHPKAH 183 (191)
T ss_dssp EEEETTTCCEE-EEEECCSBCTTTCCBGGG
T ss_pred eEEECCCCCEe-eCCCCCCCCCCCcCCHHH
Confidence 59999999996 43 23499999998653
No 55
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=45.09 E-value=4.5 Score=37.63 Aligned_cols=85 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred CCCCCcccCCCCCCCcccc---------CCcccccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCcc
Q 039618 57 VRPGDWYCSVGNCGAHNFA---------SRSSCFKCGATKDDSAGGFGEGGDMPRMRGFRFGGGGSSSSSRSGWKSGDWI 127 (181)
Q Consensus 57 ~~~GdW~C~~~~C~~~Nfa---------~R~~C~~C~apkp~~~~~~g~~~~~~~~~g~g~g~~~~~~~~~~~~k~GDW~ 127 (181)
.....|+|+ -|.+.|-. -...|..|+.+.+...-...-.....+ ... .......-...+=.
T Consensus 113 ~~~~tWvC~--ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~~k~~i~~~~~~--~~~------~~~~~~~~~~~~~~ 182 (566)
T 1w7p_D 113 DVVSTWVCP--ICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAI--DPN------ANPQNQFGVNSENI 182 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccceecc--ccccCCCCCCCCCcccCCCCcccccCCCCchhhhhhhhhccccC--CCc------ccCccccccccCCC
Confidence 446889999 99999985 245799999986543211000000000 000 00000000113566
Q ss_pred cCCCCccchhhhhhhccccCCCcCC
Q 039618 128 CTLGLVAMSTILQAEQNVLDAVHQG 152 (181)
Q Consensus 128 C~~C~~~N~~a~r~~Cn~c~~~~~g 152 (181)
||+|=.+| -++-..|-+|.++-+.
T Consensus 183 CP~CTF~N-HPsl~~CEiCg~~L~~ 206 (566)
T 1w7p_D 183 CPACTFAN-HPQIGNCEICGHRLPN 206 (566)
T ss_dssp -------------------------
T ss_pred CCcccccC-ChhhhcccccCCcCCC
Confidence 99999999 8999999999877655
No 56
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=36.82 E-value=28 Score=24.90 Aligned_cols=20 Identities=30% Similarity=0.928 Sum_probs=14.4
Q ss_pred CCCCCcccCCCCCCCccccCCcccccCCCC
Q 039618 57 VRPGDWYCSVGNCGAHNFASRSSCFKCGAT 86 (181)
Q Consensus 57 ~~~GdW~C~~~~C~~~Nfa~R~~C~~C~ap 86 (181)
...++|.|+ .|. .|..|+..
T Consensus 51 ~~~~~W~C~--~C~--------~C~vC~~~ 70 (112)
T 3v43_A 51 VKALRWQCI--ECK--------TCSSCRDQ 70 (112)
T ss_dssp HHTSCCCCT--TTC--------CBTTTCCC
T ss_pred hhccccccc--cCC--------ccccccCc
Confidence 357899998 665 57777654
No 57
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=34.67 E-value=18 Score=23.69 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=23.1
Q ss_pred CCCCcccCCCCCCCccccCCcccccCCC
Q 039618 58 RPGDWYCSVGNCGAHNFASRSSCFKCGA 85 (181)
Q Consensus 58 ~~GdW~C~~~~C~~~Nfa~R~~C~~C~a 85 (181)
.-.-++|- .|...|-.+.+.|-+|+.
T Consensus 16 ~~~k~ICr--kC~ARnp~~A~~CRKCg~ 41 (56)
T 2ayj_A 16 VFLKKVCR--KCGALNPIRATKCRRCHS 41 (56)
T ss_dssp SCCCEEET--TTCCEECTTCSSCTTTCC
T ss_pred Hhchhhhc--cccCcCCcccccccCCCC
Confidence 34678998 999999999999999985
No 58
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=32.68 E-value=23 Score=25.55 Aligned_cols=28 Identities=18% Similarity=0.560 Sum_probs=21.9
Q ss_pred CCceEcCCCCcccee--ccc-cccccCCCCC
Q 039618 4 PGDWNCRSCNHLNFQ--RRD-SCQRCGEPRA 31 (181)
Q Consensus 4 ~GdW~C~~C~~~Nfa--~r~-~C~~C~~pkp 31 (181)
|..|.|..|+..-.. ... .|+.|+.+..
T Consensus 71 p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 71 KVELECKDCSHVFKPNALDYGVCEKCHSKNV 101 (119)
T ss_dssp CCEEECSSSSCEECSCCSTTCCCSSSSSCCC
T ss_pred cceEEcCCCCCEEeCCCCCCCcCccccCCCc
Confidence 679999999987543 345 8999999863
No 59
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=31.74 E-value=16 Score=22.28 Aligned_cols=11 Identities=27% Similarity=0.821 Sum_probs=9.2
Q ss_pred CCCcccCCCCc
Q 039618 123 SGDWICTLGLV 133 (181)
Q Consensus 123 ~GDW~C~~C~~ 133 (181)
.|+|.|+.|..
T Consensus 39 ~g~W~C~~C~~ 49 (51)
T 1f62_A 39 DGEWQCPACQP 49 (51)
T ss_dssp SSCCSCTTTSC
T ss_pred CCcEECcCccc
Confidence 58999999964
No 60
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=28.02 E-value=50 Score=28.00 Aligned_cols=15 Identities=27% Similarity=0.669 Sum_probs=11.6
Q ss_pred CCCCCcccCCCCccc
Q 039618 121 WKSGDWICTLGLVAM 135 (181)
Q Consensus 121 ~k~GDW~C~~C~~~N 135 (181)
...||.+|..||.+=
T Consensus 38 ~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 38 FSEGDVVCALCGLVL 52 (345)
T ss_dssp SSSCSCCCSSSCCCC
T ss_pred CCCCCEecCCCCeEc
Confidence 346889999998865
No 61
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=27.12 E-value=35 Score=25.56 Aligned_cols=28 Identities=25% Similarity=0.544 Sum_probs=21.6
Q ss_pred CCceEcCCCCccceec-----------------------cccccccCCCCC
Q 039618 4 PGDWNCRSCNHLNFQR-----------------------RDSCQRCGEPRA 31 (181)
Q Consensus 4 ~GdW~C~~C~~~Nfa~-----------------------r~~C~~C~~pkp 31 (181)
|..|.|..|+..-... ...|+.|+.+..
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~ 118 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDF 118 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCE
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCcc
Confidence 6789999998875432 466999999864
No 62
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=25.92 E-value=21 Score=22.85 Aligned_cols=13 Identities=23% Similarity=0.843 Sum_probs=10.5
Q ss_pred CCCcccCCCCccc
Q 039618 123 SGDWICTLGLVAM 135 (181)
Q Consensus 123 ~GDW~C~~C~~~N 135 (181)
.|+|.|+.|...-
T Consensus 45 ~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 45 NGEWLCPRCTCPA 57 (61)
T ss_dssp SSCCCCTTTTTTC
T ss_pred CCccCChhhcCch
Confidence 5899999997643
No 63
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=25.28 E-value=23 Score=22.71 Aligned_cols=11 Identities=27% Similarity=0.694 Sum_probs=9.3
Q ss_pred CCCcccCCCCc
Q 039618 123 SGDWICTLGLV 133 (181)
Q Consensus 123 ~GDW~C~~C~~ 133 (181)
.|+|.|+.|..
T Consensus 47 ~g~W~C~~C~~ 57 (61)
T 2l5u_A 47 EGKWSCPHCEK 57 (61)
T ss_dssp CSSCCCTTGGG
T ss_pred CCceECccccc
Confidence 58999999964
No 64
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=25.15 E-value=27 Score=22.96 Aligned_cols=12 Identities=8% Similarity=-0.067 Sum_probs=9.7
Q ss_pred CCCCcccCCCCc
Q 039618 122 KSGDWICTLGLV 133 (181)
Q Consensus 122 k~GDW~C~~C~~ 133 (181)
..|+|.|+.|-.
T Consensus 47 P~g~W~C~~C~~ 58 (66)
T 2lri_C 47 PGTGLRCRSCSG 58 (66)
T ss_dssp CSSSCCCTTTTT
T ss_pred CCCCEECccccC
Confidence 368999999964
No 65
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=22.10 E-value=33 Score=24.11 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=16.1
Q ss_pred CCCCCcccCCCCCCCccccCCcccccCCC
Q 039618 57 VRPGDWYCSVGNCGAHNFASRSSCFKCGA 85 (181)
Q Consensus 57 ~~~GdW~C~~~~C~~~Nfa~R~~C~~C~a 85 (181)
....+..|. .|+... ....|-.|-.
T Consensus 21 ~d~n~~~C~--vC~~~g--~LL~CD~C~~ 45 (88)
T 1fp0_A 21 LDDSATICR--VCQKPG--DLVMCNQCEF 45 (88)
T ss_dssp SSSSSSCCS--SSCSSS--CCEECTTSSC
T ss_pred cCCCCCcCc--CcCCCC--CEEECCCCCC
Confidence 445677887 787653 4666776644
No 66
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=21.59 E-value=20 Score=23.99 Aligned_cols=13 Identities=31% Similarity=0.900 Sum_probs=10.3
Q ss_pred CCCCcccCCCCcc
Q 039618 122 KSGDWICTLGLVA 134 (181)
Q Consensus 122 k~GDW~C~~C~~~ 134 (181)
.+|+|.|+.|...
T Consensus 54 P~g~W~C~~C~~~ 66 (71)
T 2ku3_A 54 PEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCCCCHHHHHH
T ss_pred CCCCcCCccCcCc
Confidence 3689999999653
No 67
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=21.10 E-value=39 Score=26.79 Aligned_cols=27 Identities=26% Similarity=0.424 Sum_probs=21.1
Q ss_pred CCcccCCCCCCCccccCC-cccccCCCCCC
Q 039618 60 GDWYCSVGNCGAHNFASR-SSCFKCGATKD 88 (181)
Q Consensus 60 GdW~C~~~~C~~~Nfa~R-~~C~~C~apkp 88 (181)
--|.|. .|+.+-.... -.|..|++++.
T Consensus 170 ~~~~C~--~CG~i~~g~~p~~CP~C~~~k~ 197 (202)
T 1yuz_A 170 KFHLCP--ICGYIHKGEDFEKCPICFRPKD 197 (202)
T ss_dssp CEEECS--SSCCEEESSCCSBCTTTCCBGG
T ss_pred cEEEEC--CCCCEEcCcCCCCCCCCCCChH
Confidence 479999 9999855433 48999999874
Done!