BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039619
         (459 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 36.6 bits (83), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 94/246 (38%), Gaps = 50/246 (20%)

Query: 158 LKHLY--IISCSNLESIAEGLDDNTSLETMEIFICQN-LKALPNGLRNLTSLQYLLIQDC 214
           L HL    I  + L  + +       LET+ +   +N L+ALP  + +L  L+ L I+ C
Sbjct: 103 LSHLQHXTIDAAGLXELPDTXQQFAGLETLTL--ARNPLRALPASIASLNRLRELSIRAC 160

Query: 215 PTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFP 274
           P +        P  LAS     E            GL    S+RL      E  G+ S P
Sbjct: 161 PELTE-----LPEPLASTDASGEH----------QGLVNLQSLRL------EWTGIRSLP 199

Query: 275 PEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPD-NGLPTSL 333
                  A   +LK L I N P      +I +L   E L L  C  L+ +P   G    L
Sbjct: 200 ----ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255

Query: 334 LRLEIYGC------PLIEERFEK----------DKGQYWSLIADIPCVRIDCHYVIDPKA 377
            RL +  C      PL   R  +          +  +  SLIA +P    +C  ++ P  
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA---NCIILVPPHL 312

Query: 378 QRQLIQ 383
           Q QL Q
Sbjct: 313 QAQLDQ 318


>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
           Receptors B59
 pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
           Receptors B59
          Length = 208

 Score = 34.3 bits (77), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 58/108 (53%), Gaps = 13/108 (12%)

Query: 120 SLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYI----------ISCSNL 169
           SLT L+       +L N   ++ + L +L+L  N  ++L +             ++ + L
Sbjct: 53  SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL 112

Query: 170 ESIAEGLDDN-TSLETMEIFICQNLKALPNGLRN-LTSLQYLLIQDCP 215
           +S+ +G+ D  T L+ + ++  Q LK++P+G+ + LTSLQY+ + D P
Sbjct: 113 QSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 159


>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
           Receptors Of Jawless Vertebrates By Module Engineering
 pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
           Receptors Of Jawless Vertebrates By Module Engineering
          Length = 272

 Score = 33.9 bits (76), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 19/122 (15%)

Query: 112 QLQIIPCPSLTSLWSKSELP------ATLENIYVDRCSKLAFLSLRGNLSKAL-KHLYI- 163
           QLQ +P      L +  EL        +L +   D+ + L +L+L  N  ++L K ++  
Sbjct: 96  QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK 155

Query: 164 --------ISCSNLESIAEGLDDN-TSLETMEIFICQNLKALPNGLRN-LTSLQYLLIQD 213
                   +S + L+S+ EG+ D  T L+ + ++  Q LK++P+G+ + LTSLQY+ + D
Sbjct: 156 LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHD 214

Query: 214 CP 215
            P
Sbjct: 215 NP 216


>pdb|2ZV6|A Chain A, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
           1
 pdb|2ZV6|B Chain B, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
           1
 pdb|2ZV6|C Chain C, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
           1
          Length = 401

 Score = 32.7 bits (73), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 295 FPNLERISSIENLTSFESLQLCCCPKLQ----KFPDNGLPTSLLRL---EIYGCPLIEER 347
           +PN     SI+ +  + S        +Q    + P  G   S++ L   EI G   +EE+
Sbjct: 212 WPNKNTYKSIQMMRQYTSFHFASLEDVQAKVLEIPYKGKDLSMIVLLPNEIDGLQKLEEK 271

Query: 348 FEKDKGQYWSLIADIPCVRIDCH 370
              +K   W+ + ++   R+D H
Sbjct: 272 LTAEKLMEWTSLQNMRETRVDLH 294


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,938,197
Number of Sequences: 62578
Number of extensions: 524578
Number of successful extensions: 1171
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1166
Number of HSP's gapped (non-prelim): 10
length of query: 459
length of database: 14,973,337
effective HSP length: 102
effective length of query: 357
effective length of database: 8,590,381
effective search space: 3066766017
effective search space used: 3066766017
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)