Query 039619
Match_columns 459
No_of_seqs 553 out of 2953
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 11:28:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039619.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039619hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 2.3E-30 4.9E-35 289.7 23.9 342 86-453 586-1028(1153)
2 PLN03210 Resistant to P. syrin 99.9 2.8E-20 6E-25 208.8 21.3 281 24-345 610-944 (1153)
3 PLN00113 leucine-rich repeat r 99.8 3.9E-19 8.4E-24 198.4 16.3 150 110-264 166-317 (968)
4 PLN00113 leucine-rich repeat r 99.8 2.3E-18 5.1E-23 192.2 17.2 146 90-239 189-344 (968)
5 KOG0444 Cytoskeletal regulator 99.7 1.8E-19 3.8E-24 177.5 -5.9 298 23-346 53-377 (1255)
6 KOG4194 Membrane glycoprotein 99.6 5.5E-17 1.2E-21 159.2 3.0 274 25-339 78-373 (873)
7 PRK15387 E3 ubiquitin-protein 99.6 2.8E-14 6.1E-19 150.6 15.7 211 87-342 240-456 (788)
8 KOG4194 Membrane glycoprotein 99.6 4E-16 8.7E-21 153.2 0.9 54 284-339 391-447 (873)
9 KOG0444 Cytoskeletal regulator 99.6 4.2E-17 9E-22 161.0 -7.0 296 5-341 4-349 (1255)
10 PRK15387 E3 ubiquitin-protein 99.6 6.1E-14 1.3E-18 148.1 15.8 230 24-319 221-456 (788)
11 PRK15370 E3 ubiquitin-protein 99.4 2.5E-13 5.4E-18 144.2 9.4 197 110-341 201-398 (754)
12 PRK15370 E3 ubiquitin-protein 99.4 4.5E-13 9.9E-18 142.2 9.4 220 86-343 196-427 (754)
13 KOG0472 Leucine-rich repeat pr 99.3 7.4E-15 1.6E-19 138.5 -10.4 228 90-342 69-308 (565)
14 KOG0617 Ras suppressor protein 99.3 5.6E-14 1.2E-18 118.2 -5.8 156 156-326 33-190 (264)
15 KOG0472 Leucine-rich repeat pr 99.3 3.9E-14 8.5E-19 133.7 -8.0 207 90-319 92-308 (565)
16 KOG0618 Serine/threonine phosp 99.2 6E-13 1.3E-17 137.5 -4.8 215 110-343 243-488 (1081)
17 KOG0618 Serine/threonine phosp 99.2 8.8E-13 1.9E-17 136.3 -3.6 220 130-371 239-487 (1081)
18 KOG0617 Ras suppressor protein 99.1 8.7E-13 1.9E-17 111.1 -5.1 154 132-302 33-189 (264)
19 PRK15386 type III secretion pr 98.9 1.3E-08 2.8E-13 99.6 11.6 90 132-236 52-141 (426)
20 KOG4658 Apoptotic ATPase [Sign 98.9 2.1E-09 4.6E-14 116.3 5.7 226 110-349 525-788 (889)
21 KOG4341 F-box protein containi 98.8 7.3E-11 1.6E-15 112.5 -6.1 95 284-382 345-448 (483)
22 KOG4341 F-box protein containi 98.8 1.3E-10 2.7E-15 110.9 -5.6 151 203-369 293-458 (483)
23 PRK15386 type III secretion pr 98.7 3.9E-08 8.4E-13 96.3 9.6 55 90-147 53-109 (426)
24 KOG4237 Extracellular matrix p 98.7 1.1E-09 2.3E-14 104.0 -4.2 239 85-342 63-357 (498)
25 KOG1259 Nischarin, modulator o 98.5 1.7E-08 3.8E-13 92.6 0.6 123 110-264 286-408 (490)
26 KOG4658 Apoptotic ATPase [Sign 98.5 5.4E-08 1.2E-12 105.5 3.5 81 107-189 569-651 (889)
27 KOG4237 Extracellular matrix p 98.5 4.4E-09 9.6E-14 99.8 -4.8 221 110-342 69-333 (498)
28 cd00116 LRR_RI Leucine-rich re 98.4 7.6E-09 1.7E-13 100.6 -4.6 11 156-166 81-91 (319)
29 cd00116 LRR_RI Leucine-rich re 98.4 8.6E-08 1.9E-12 93.2 2.0 130 131-264 80-230 (319)
30 KOG0532 Leucine-rich repeat (L 98.4 7.5E-09 1.6E-13 102.5 -5.8 185 113-318 80-270 (722)
31 COG4886 Leucine-rich repeat (L 98.4 2.1E-07 4.6E-12 93.5 4.3 172 132-321 116-290 (394)
32 KOG1259 Nischarin, modulator o 98.3 1.1E-07 2.3E-12 87.5 -0.2 126 201-342 281-410 (490)
33 KOG3207 Beta-tubulin folding c 98.2 2.1E-07 4.6E-12 89.7 -0.3 199 110-317 123-335 (505)
34 COG4886 Leucine-rich repeat (L 98.2 1E-06 2.2E-11 88.6 4.0 174 110-302 118-293 (394)
35 PF14580 LRR_9: Leucine-rich r 98.1 1E-06 2.3E-11 77.1 2.3 34 285-319 88-124 (175)
36 PF14580 LRR_9: Leucine-rich r 98.1 1.9E-06 4.1E-11 75.5 3.3 129 226-375 18-152 (175)
37 KOG0532 Leucine-rich repeat (L 98.1 2.8E-07 6E-12 91.7 -3.0 184 93-295 79-270 (722)
38 KOG3207 Beta-tubulin folding c 98.0 8E-07 1.7E-11 85.8 -0.8 196 130-342 119-337 (505)
39 KOG2120 SCF ubiquitin ligase, 97.9 2.2E-07 4.8E-12 85.4 -7.1 59 283-341 311-373 (419)
40 KOG2120 SCF ubiquitin ligase, 97.8 2.4E-07 5.3E-12 85.2 -7.8 176 132-318 185-373 (419)
41 PF13855 LRR_8: Leucine rich r 97.7 5.4E-05 1.2E-09 54.1 4.6 57 156-214 1-59 (61)
42 PF13855 LRR_8: Leucine rich r 97.7 4.1E-05 8.8E-10 54.7 3.6 57 255-318 1-59 (61)
43 KOG1859 Leucine-rich repeat pr 97.7 9.1E-07 2E-11 90.4 -7.2 122 206-343 166-291 (1096)
44 PLN03150 hypothetical protein; 97.6 0.00011 2.3E-09 78.1 6.5 112 181-301 419-531 (623)
45 KOG0531 Protein phosphatase 1, 97.6 1E-05 2.3E-10 81.7 -1.2 166 130-317 93-264 (414)
46 PLN03150 hypothetical protein; 97.5 0.00018 3.9E-09 76.4 6.4 104 133-237 419-525 (623)
47 KOG0531 Protein phosphatase 1, 97.2 5E-05 1.1E-09 76.8 -2.0 186 133-340 73-264 (414)
48 KOG1859 Leucine-rich repeat pr 97.0 6.5E-06 1.4E-10 84.3 -9.9 38 25-62 84-121 (1096)
49 KOG1644 U2-associated snRNP A' 97.0 0.0018 4E-08 56.9 6.2 103 226-342 41-151 (233)
50 KOG1947 Leucine rich repeat pr 96.9 5.5E-05 1.2E-09 77.8 -4.4 107 110-217 190-308 (482)
51 KOG3665 ZYG-1-like serine/thre 96.9 0.00028 6.1E-09 75.1 0.6 79 132-213 122-204 (699)
52 PF12799 LRR_4: Leucine Rich r 96.9 0.0011 2.4E-08 43.7 3.0 33 157-190 2-34 (44)
53 PF12799 LRR_4: Leucine Rich r 96.7 0.0017 3.7E-08 42.8 3.2 40 180-221 1-40 (44)
54 KOG1947 Leucine rich repeat pr 96.7 5.4E-05 1.2E-09 77.9 -6.5 230 110-346 163-416 (482)
55 KOG3665 ZYG-1-like serine/thre 96.7 0.00066 1.4E-08 72.4 1.6 15 303-317 215-229 (699)
56 KOG1909 Ran GTPase-activating 95.4 0.0025 5.5E-08 60.5 -1.4 13 252-264 210-222 (382)
57 KOG1909 Ran GTPase-activating 95.1 0.0023 5E-08 60.7 -2.8 157 176-342 88-281 (382)
58 KOG2123 Uncharacterized conser 94.9 0.0012 2.7E-08 60.7 -5.0 96 228-338 20-124 (388)
59 KOG1644 U2-associated snRNP A' 94.5 0.062 1.3E-06 47.5 4.8 79 180-264 42-122 (233)
60 KOG3864 Uncharacterized conser 94.3 0.0055 1.2E-07 53.9 -2.1 81 229-317 103-185 (221)
61 KOG2123 Uncharacterized conser 94.0 0.0027 5.8E-08 58.6 -4.7 97 132-233 19-123 (388)
62 KOG2739 Leucine-rich acidic nu 93.8 0.025 5.5E-07 51.8 1.1 11 330-340 142-152 (260)
63 KOG2982 Uncharacterized conser 92.4 0.092 2E-06 49.2 2.5 39 285-324 224-265 (418)
64 PF13306 LRR_5: Leucine rich r 92.2 0.86 1.9E-05 37.3 8.0 36 176-213 8-44 (129)
65 PF00560 LRR_1: Leucine Rich R 91.9 0.087 1.9E-06 28.8 1.1 9 182-190 2-10 (22)
66 PF00560 LRR_1: Leucine Rich R 91.8 0.1 2.3E-06 28.5 1.3 20 157-177 1-20 (22)
67 KOG2739 Leucine-rich acidic nu 90.8 0.13 2.8E-06 47.3 1.7 106 202-318 41-153 (260)
68 PF13504 LRR_7: Leucine rich r 90.1 0.19 4E-06 25.6 1.2 9 310-318 3-11 (17)
69 PF13306 LRR_5: Leucine rich r 89.8 1.7 3.7E-05 35.5 7.6 52 156-211 12-65 (129)
70 KOG2982 Uncharacterized conser 89.6 0.24 5.3E-06 46.5 2.4 204 156-378 71-294 (418)
71 KOG3864 Uncharacterized conser 89.4 0.06 1.3E-06 47.6 -1.6 61 283-343 123-188 (221)
72 KOG4579 Leucine-rich repeat (L 88.6 0.044 9.5E-07 45.5 -2.8 77 133-213 54-132 (177)
73 COG5238 RNA1 Ran GTPase-activa 83.4 0.18 4E-06 46.7 -1.8 40 175-214 87-130 (388)
74 KOG4579 Leucine-rich repeat (L 83.0 0.18 3.9E-06 42.0 -1.8 60 252-318 50-110 (177)
75 smart00367 LRR_CC Leucine-rich 78.8 1.5 3.2E-05 24.9 1.5 15 308-322 2-16 (26)
76 smart00369 LRR_TYP Leucine-ric 61.5 6.5 0.00014 22.0 1.7 18 308-326 2-19 (26)
77 smart00370 LRR Leucine-rich re 61.5 6.5 0.00014 22.0 1.7 18 308-326 2-19 (26)
78 smart00364 LRR_BAC Leucine-ric 56.6 6.2 0.00014 22.6 1.0 18 88-109 1-18 (26)
79 PF05725 FNIP: FNIP Repeat; I 55.4 20 0.00044 23.2 3.5 15 84-98 7-21 (44)
80 COG5238 RNA1 Ran GTPase-activa 50.5 4.5 9.9E-05 37.8 -0.4 104 156-264 92-223 (388)
81 PF13516 LRR_6: Leucine Rich r 36.4 24 0.00053 19.2 1.3 11 332-342 3-13 (24)
82 smart00365 LRR_SD22 Leucine-ri 25.8 48 0.001 18.9 1.3 9 286-294 3-11 (26)
83 PF15028 PTCRA: Pre-T-cell ant 20.6 1E+02 0.0022 25.1 2.7 35 423-457 24-71 (154)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=2.3e-30 Score=289.74 Aligned_cols=342 Identities=20% Similarity=0.287 Sum_probs=245.4
Q ss_pred CCCCCcCceEEeCCCCCCCCCccc-------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeecccccccccc
Q 039619 86 PVSVTLKDPEVLDCPVCYEPLTIP-------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKAL 158 (459)
Q Consensus 86 ~lp~~L~~L~l~~c~~l~~l~~lp-------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L 158 (459)
.+|.+|+.|++.+ +.++.+| |++|++.+ +.++.+|.....+++|+.|+++++..++.+|....+ ++|
T Consensus 586 ~lp~~Lr~L~~~~----~~l~~lP~~f~~~~L~~L~L~~-s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l-~~L 659 (1153)
T PLN03210 586 YLPPKLRLLRWDK----YPLRCMPSNFRPENLVKLQMQG-SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMA-TNL 659 (1153)
T ss_pred hcCcccEEEEecC----CCCCCCCCcCCccCCcEEECcC-ccccccccccccCCCCCEEECCCCCCcCcCCccccC-Ccc
Confidence 5677899999988 4566666 88888877 567788766666778899999888888888866667 888
Q ss_pred ceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEE------
Q 039619 159 KHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASV------ 232 (459)
Q Consensus 159 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L------ 232 (459)
++|++++|..+..+|..+..+++|+.|++++|..++.+|..+ ++++|+.|++++|..++.+|. .+++|++|
T Consensus 660 e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~ 736 (1153)
T PLN03210 660 ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETA 736 (1153)
T ss_pred cEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc--ccCCcCeeecCCCc
Confidence 999998888888888888888889999998888888888765 688888888888877666553 12333333
Q ss_pred -----------------------------------------------EEecCcccccccccCCCCCCCCCccCEEEEeCC
Q 039619 233 -----------------------------------------------CIDYEKIYKPLILERGPGLHRFTSVRLLTLFGG 265 (459)
Q Consensus 233 -----------------------------------------------~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~ 265 (459)
+++++...... |. .++++++|+.|++++
T Consensus 737 i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l-P~---si~~L~~L~~L~Ls~- 811 (1153)
T PLN03210 737 IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL-PS---SIQNLHKLEHLEIEN- 811 (1153)
T ss_pred cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcccc-Ch---hhhCCCCCCEEECCC-
Confidence 33332111111 22 456778888888888
Q ss_pred cCCCceecCCCCCCCccCCCCcceEEeecCCCCC--------------------ccC-CCCCCCCCCEEeccCCCCCCcC
Q 039619 266 ECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLE--------------------RIS-SIENLTSFESLQLCCCPKLQKF 324 (459)
Q Consensus 266 ~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~--------------------~l~-~l~~l~~L~~L~l~~c~~l~~l 324 (459)
|..++.+|... .+++|+.|++++|..++ .+| ++..+++|+.|++++|++++.+
T Consensus 812 -C~~L~~LP~~~-----~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 812 -CINLETLPTGI-----NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred -CCCcCeeCCCC-----CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCcc
Confidence 77787777654 45666666666665443 444 5566788888999999888888
Q ss_pred CCC-CCCCCcceEEeeCCchhHHhhhcCcCCc--------cccccCCCeEEeCceeeeCHHHHhhhhhcC---cEEecCC
Q 039619 325 PDN-GLPTSLLRLEIYGCPLIEERFEKDKGQY--------WSLIADIPCVRIDCHYVIDPKAQRQLIQTG---DYTIPHS 392 (459)
Q Consensus 325 p~~-~l~~sL~~L~i~~c~~L~~~~~~~~~~~--------~~~i~~i~~l~~~~~~~l~~~~~~~~~~~~---~~~~p~~ 392 (459)
|.. .-+++|+.+++.+|+.|+.......... ...+.....+.+.+|+++++.+. +.++. .+.+||.
T Consensus 886 ~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~--l~~~~~~~~~~l~g~ 963 (1153)
T PLN03210 886 SLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEAL--LQQQSIFKQLILSGE 963 (1153)
T ss_pred CcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhh--hcccccceEEECCCc
Confidence 763 2257888889999988875422110000 00111223467889999998774 23222 4789999
Q ss_pred Cc-eecccccccccCCcEEE-EeCCCCcc--cccCceeeeEEeecccc---cceeEEEEeccc-ccccc
Q 039619 393 SA-HFFPYQLIKLISGRTTA-FADEPSEQ--DDSGLRAPLVVTGLSLS---NRIKLYYYCDPY-ELGKW 453 (459)
Q Consensus 393 ~~-~~~~~~~~~~~~g~~~~-~~~~~~~~--~~~gf~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~ 453 (459)
++ .||.|+.. |.+++ |.+++.|. .|.||++|+|+++.... ..+.+.|.|+++ ..|.+
T Consensus 964 evp~~f~hr~~----g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 1028 (1153)
T PLN03210 964 EVPSYFTHRTT----GASLTNIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNH 1028 (1153)
T ss_pred cCchhccCCcc----cceeeeeccCCcccCCCccceEEEEEEecCccccCCCceeEEEEEEEECCCCCc
Confidence 99 99999999 99998 99999887 69999999999886542 366788888887 44544
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=2.8e-20 Score=208.83 Aligned_cols=281 Identities=18% Similarity=0.227 Sum_probs=197.8
Q ss_pred CCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCCC
Q 039619 24 FPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVCY 103 (459)
Q Consensus 24 f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l~ 103 (459)
+.+|++|++.+..-...|.. ...+++|+.|.+.++..+. .+ ..... .++|++|++++| .
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~--~~~l~~Lk~L~Ls~~~~l~----------~i-----p~ls~-l~~Le~L~L~~c---~ 668 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDG--VHSLTGLRNIDLRGSKNLK----------EI-----PDLSM-ATNLETLKLSDC---S 668 (1153)
T ss_pred ccCCcEEECcCccccccccc--cccCCCCCEEECCCCCCcC----------cC-----Ccccc-CCcccEEEecCC---C
Confidence 45666666665432222222 2356677777776554321 00 11112 348888888888 4
Q ss_pred CCCccc--------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCcccccc
Q 039619 104 EPLTIP--------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEG 175 (459)
Q Consensus 104 ~l~~lp--------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~ 175 (459)
.+..+| |+.|++++|..++.+|... .+++|+.|++++|..++.+|.. . .+|++|+++++ .++.+|..
T Consensus 669 ~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~-~nL~~L~L~~n-~i~~lP~~ 743 (1153)
T PLN03210 669 SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--S-TNISWLDLDET-AIEEFPSN 743 (1153)
T ss_pred CccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--c-CCcCeeecCCC-cccccccc
Confidence 555555 8888888888888888444 5568888888888877777622 2 66777777664 34555432
Q ss_pred C------------------------------CCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCC
Q 039619 176 L------------------------------DDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCF 225 (459)
Q Consensus 176 l------------------------------~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~ 225 (459)
+ ..+++|+.|++++|..+..+|..++++++|+.|++++|..++.+|....
T Consensus 744 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~ 823 (1153)
T PLN03210 744 LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGIN 823 (1153)
T ss_pred ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCC
Confidence 2 1135788888888888888898899999999999999999999987666
Q ss_pred CCCccEEEEec-CcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-C
Q 039619 226 PTNLASVCIDY-EKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-S 303 (459)
Q Consensus 226 ~~~L~~L~l~~-~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~ 303 (459)
+++|++|++++ +.+.... ...++|+.|++++ +.++.+|...+ .+++|+.|++++|++++.++ .
T Consensus 824 L~sL~~L~Ls~c~~L~~~p--------~~~~nL~~L~Ls~---n~i~~iP~si~----~l~~L~~L~L~~C~~L~~l~~~ 888 (1153)
T PLN03210 824 LESLESLDLSGCSRLRTFP--------DISTNISDLNLSR---TGIEEVPWWIE----KFSNLSFLDMNGCNNLQRVSLN 888 (1153)
T ss_pred ccccCEEECCCCCcccccc--------ccccccCEeECCC---CCCccChHHHh----cCCCCCEEECCCCCCcCccCcc
Confidence 88999999998 5554221 2346899999988 57888887663 78899999999999999999 8
Q ss_pred CCCCCCCCEEeccCCCCCCcCCCCCCC--------------CCcceEEeeCCchhH
Q 039619 304 IENLTSFESLQLCCCPKLQKFPDNGLP--------------TSLLRLEIYGCPLIE 345 (459)
Q Consensus 304 l~~l~~L~~L~l~~c~~l~~lp~~~l~--------------~sL~~L~i~~c~~L~ 345 (459)
+..+++|+.+++++|..++.++....+ ++...+.+.+|.+|.
T Consensus 889 ~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 889 ISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred cccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 889999999999999999876532221 223445677887665
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.80 E-value=3.9e-19 Score=198.41 Aligned_cols=150 Identities=18% Similarity=0.215 Sum_probs=62.8
Q ss_pred eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeecc-ccccccccceEEeecccCCccccccCCCCCcccEEeec
Q 039619 110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL-RGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIF 188 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~-~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 188 (459)
|++|++++|.....+|.....+++|++|++++|.....+|. .+.+ ++|++|+++++.....+|..+..+++|++|+++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM-KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc-CCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence 45555544333333443333344555555544433223331 1333 444455554443333344444444555555554
Q ss_pred cccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeC
Q 039619 189 ICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFG 264 (459)
Q Consensus 189 ~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~ 264 (459)
+|.....+|..++.+++|++|++++|.....+|.. ..+++|++|+++++.+.... +. .+..+++|+.|++++
T Consensus 245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~---~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI-PE---LVIQLQNLEILHLFS 317 (968)
T ss_pred CceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC-Ch---hHcCCCCCcEEECCC
Confidence 44333334444444444444444443322222222 22344444444444433222 22 334444444444444
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.78 E-value=2.3e-18 Score=192.16 Aligned_cols=146 Identities=13% Similarity=0.028 Sum_probs=69.2
Q ss_pred CcCceEEeCCCCCCCCCccc--------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeecc-ccccccccce
Q 039619 90 TLKDPEVLDCPVCYEPLTIP--------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL-RGNLSKALKH 160 (459)
Q Consensus 90 ~L~~L~l~~c~~l~~l~~lp--------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~-~~~lp~~L~~ 160 (459)
+|++|++++| .-...+| |++|+++++.....+|.....+++|++|++++|.....+|. .+.+ ++|++
T Consensus 189 ~L~~L~L~~n---~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~ 264 (968)
T PLN00113 189 SLEFLTLASN---QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL-KNLQY 264 (968)
T ss_pred CCCeeeccCC---CCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC-CCCCE
Confidence 5667777665 2222233 66666666444444554445555666666666533333331 2344 55555
Q ss_pred EEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcc
Q 039619 161 LYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKI 239 (459)
Q Consensus 161 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l 239 (459)
|+++++.....+|..+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|.. ..+++|+.|+++++.+
T Consensus 265 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred EECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC
Confidence 555554333344444555555555555554333344444444455555555444322222221 2234444444444333
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.70 E-value=1.8e-19 Score=177.54 Aligned_cols=298 Identities=17% Similarity=0.149 Sum_probs=223.2
Q ss_pred CCCCCCeEeccCCCccCcccccCCccCCccceeecccccc----ccccCCCCCCCcccCCCCCCCCCCCCC------CcC
Q 039619 23 RFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETR----AADKGGGSKGNKTADPGKRSNNGPVSV------TLK 92 (459)
Q Consensus 23 ~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~lp~------~L~ 92 (459)
.+.+|++|++....-.... .....+|.|+.+.++.+.- +...-+...++.++|.+.. .....|. ++-
T Consensus 53 ~lqkLEHLs~~HN~L~~vh--GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVH--GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSI 129 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhh--hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcE
Confidence 4677888877654332211 2334688888888876531 1111223333444444332 2233444 455
Q ss_pred ceEEeCCCCCCCCCccc---------eeEEEEecCCCCccccCCccccccCcEEEeecCC----Cceeeccccccccccc
Q 039619 93 DPEVLDCPVCYEPLTIP---------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCS----KLAFLSLRGNLSKALK 159 (459)
Q Consensus 93 ~L~l~~c~~l~~l~~lp---------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~----~l~~l~~~~~lp~~L~ 159 (459)
+|++++ +++.++| |-.|+|++ +.+..+|+.+.-+.+|++|.+++.+ ++..+| .+ ++|+
T Consensus 130 VLNLS~----N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP---sm-tsL~ 200 (1255)
T KOG0444|consen 130 VLNLSY----NNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP---SM-TSLS 200 (1255)
T ss_pred EEEccc----CccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCc---cc-hhhh
Confidence 678888 6788888 78889987 7888999888888899999998854 344555 55 8889
Q ss_pred eEEeecccC-CccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecC
Q 039619 160 HLYIISCSN-LESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYE 237 (459)
Q Consensus 160 ~L~l~~c~~-l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~ 237 (459)
.|++++.+. +..+|.++..+.+|..++++.+ ++..+|+.+.++++|+.|++++ +.++.+... +...+|++|+++.|
T Consensus 201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSRN 278 (1255)
T ss_pred hhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhccccc
Confidence 999988543 5567999999999999999864 8889999999999999999998 567777644 55789999999999
Q ss_pred cccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEecc
Q 039619 238 KIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLC 316 (459)
Q Consensus 238 ~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~ 316 (459)
+++.. |. .+.+++.|+.|.+.++ --..+.+|.++| .+.+|+.+...+ |+++-+| ++..|..|+.|.++
T Consensus 279 QLt~L--P~---avcKL~kL~kLy~n~N-kL~FeGiPSGIG----KL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 279 QLTVL--PD---AVCKLTKLTKLYANNN-KLTFEGIPSGIG----KLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLD 347 (1255)
T ss_pred hhccc--hH---HHhhhHHHHHHHhccC-cccccCCccchh----hhhhhHHHHhhc-cccccCchhhhhhHHHHHhccc
Confidence 98743 44 7889999999999873 224678999886 888999999998 8999999 99999999999996
Q ss_pred CCCCCCcCCCC-CCCCCcceEEeeCCchhHH
Q 039619 317 CCPKLQKFPDN-GLPTSLLRLEIYGCPLIEE 346 (459)
Q Consensus 317 ~c~~l~~lp~~-~l~~sL~~L~i~~c~~L~~ 346 (459)
. +.+-.+|+. .+++.|+.|++++.|+|.-
T Consensus 348 ~-NrLiTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 348 H-NRLITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred c-cceeechhhhhhcCCcceeeccCCcCccC
Confidence 5 778888873 4589999999999988864
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.64 E-value=5.5e-17 Score=159.16 Aligned_cols=274 Identities=15% Similarity=0.214 Sum_probs=159.0
Q ss_pred CCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCCCC
Q 039619 25 PKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVCYE 104 (459)
Q Consensus 25 ~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l~~ 104 (459)
+.-+.|++++.. +..|....+..+|+|+++.+..+.-.. +...+....+|+.|++.. +.
T Consensus 78 ~~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N~Lt~----------------IP~f~~~sghl~~L~L~~----N~ 136 (873)
T KOG4194|consen 78 SQTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKNELTR----------------IPRFGHESGHLEKLDLRH----NL 136 (873)
T ss_pred cceeeeeccccc-cccCcHHHHhcCCcceeeeeccchhhh----------------cccccccccceeEEeeec----cc
Confidence 345557776542 233444445567888888877554211 111123334677777776 34
Q ss_pred CCc--------cc-eeEEEEecCCCCccccCCcccc--ccCcEEEeecCCCceeec--cccccccccceEEeecccCCcc
Q 039619 105 PLT--------IP-VYQLQIIPCPSLTSLWSKSELP--ATLENIYVDRCSKLAFLS--LRGNLSKALKHLYIISCSNLES 171 (459)
Q Consensus 105 l~~--------lp-L~~L~l~~c~~l~~lp~~~~~~--~~L~~L~l~~c~~l~~l~--~~~~lp~~L~~L~l~~c~~l~~ 171 (459)
+.+ +| |+.|||+. +.+..+| .-.++ .++++|++++ +.++.+. ....+ .+|..|.++. +.++.
T Consensus 137 I~sv~se~L~~l~alrslDLSr-N~is~i~-~~sfp~~~ni~~L~La~-N~It~l~~~~F~~l-nsL~tlkLsr-Nritt 211 (873)
T KOG4194|consen 137 ISSVTSEELSALPALRSLDLSR-NLISEIP-KPSFPAKVNIKKLNLAS-NRITTLETGHFDSL-NSLLTLKLSR-NRITT 211 (873)
T ss_pred cccccHHHHHhHhhhhhhhhhh-chhhccc-CCCCCCCCCceEEeecc-cccccccccccccc-chheeeeccc-Ccccc
Confidence 433 33 78888877 5666666 33444 4788888877 5666654 22456 6777777777 46666
Q ss_pred ccc-cCCCCCcccEEeeccccCcccC-cccCCCCCCccEEeeccCCCCccccCCCC--CCCccEEEEecCcccccccccC
Q 039619 172 IAE-GLDDNTSLETMEIFICQNLKAL-PNGLRNLTSLQYLLIQDCPTIGSFTANCF--PTNLASVCIDYEKIYKPLILER 247 (459)
Q Consensus 172 lp~-~l~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~l~~~~l~~~~~~~~ 247 (459)
+|. .|.++++|+.|++..+ .++.. -..+..+++|+.|.+.. +.+..+.++.+ +.++++|++..|++.... ..
T Consensus 212 Lp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqr-N~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn-~g- 287 (873)
T KOG4194|consen 212 LPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQR-NDISKLDDGAFYGLEKMEHLNLETNRLQAVN-EG- 287 (873)
T ss_pred cCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhh-cCcccccCcceeeecccceeecccchhhhhh-cc-
Confidence 754 3455888888887765 33322 12456677777777755 34555655533 677777777776665432 22
Q ss_pred CCCCCCCCccCEEEEeCCcCCCceecC-CCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcC
Q 039619 248 GPGLHRFTSVRLLTLFGGECCGVVSFP-PEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKF 324 (459)
Q Consensus 248 ~~~l~~l~~L~~L~l~~~~c~~l~~l~-~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~l 324 (459)
.+.++++|+.|+++. +.+..+. ..| .+.++|+.|++++ |.+++++ .+..+..|++|.+++ +.++.+
T Consensus 288 --~lfgLt~L~~L~lS~---NaI~rih~d~W----sftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l 356 (873)
T KOG4194|consen 288 --WLFGLTSLEQLDLSY---NAIQRIHIDSW----SFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSH-NSIDHL 356 (873)
T ss_pred --cccccchhhhhccch---hhhheeecchh----hhcccceeEeccc-cccccCChhHHHHHHHhhhhcccc-cchHHH
Confidence 356677777777776 4554443 233 2666777777776 6777666 555555555555555 344444
Q ss_pred CCCCC--CCCcceEEee
Q 039619 325 PDNGL--PTSLLRLEIY 339 (459)
Q Consensus 325 p~~~l--~~sL~~L~i~ 339 (459)
.+..+ .++|++|+++
T Consensus 357 ~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 357 AEGAFVGLSSLHKLDLR 373 (873)
T ss_pred HhhHHHHhhhhhhhcCc
Confidence 33222 3444444443
No 7
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=2.8e-14 Score=150.61 Aligned_cols=211 Identities=22% Similarity=0.319 Sum_probs=130.8
Q ss_pred CCCCcCceEEeCCCCCCCCCccc-----eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceE
Q 039619 87 VSVTLKDPEVLDCPVCYEPLTIP-----VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHL 161 (459)
Q Consensus 87 lp~~L~~L~l~~c~~l~~l~~lp-----L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L 161 (459)
+|++|++|+++++ .++.+| |+.|++.+ +.++.+| ..+.+|+.|+++++ .++.+|. .|++|+.|
T Consensus 240 lp~~Lk~LdLs~N----~LtsLP~lp~sL~~L~Ls~-N~L~~Lp---~lp~~L~~L~Ls~N-~Lt~LP~---~p~~L~~L 307 (788)
T PRK15387 240 LPPELRTLEVSGN----QLTSLPVLPPGLLELSIFS-NPLTHLP---ALPSGLCKLWIFGN-QLTSLPV---LPPGLQEL 307 (788)
T ss_pred CCCCCcEEEecCC----ccCcccCcccccceeeccC-Cchhhhh---hchhhcCEEECcCC-ccccccc---ccccccee
Confidence 3556777777663 344444 67777765 3455665 24456777777663 5666653 23677777
Q ss_pred EeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccc
Q 039619 162 YIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYK 241 (459)
Q Consensus 162 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~ 241 (459)
+++++ .+..+|.. ..+|+.|++++| .+..+|.. ..+|+.|++++ ++++.+|. .+++|+.|++++|.+..
T Consensus 308 dLS~N-~L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~-N~Ls~LP~--lp~~L~~L~Ls~N~L~~ 376 (788)
T PRK15387 308 SVSDN-QLASLPAL---PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSD-NQLASLPT--LPSELYKLWAYNNRLTS 376 (788)
T ss_pred ECCCC-ccccCCCC---cccccccccccC-cccccccc---ccccceEecCC-CccCCCCC--CCcccceehhhcccccc
Confidence 77764 55556542 245666777665 55555531 24677777766 45666664 45677777777766653
Q ss_pred cccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCCC
Q 039619 242 PLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKL 321 (459)
Q Consensus 242 ~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l 321 (459)
.. . ..++|+.|++++ +.+..+|. .+++|+.|++++ +.++.+|.. ..+|+.|++++ +++
T Consensus 377 LP--~------l~~~L~~LdLs~---N~Lt~LP~-------l~s~L~~LdLS~-N~LssIP~l--~~~L~~L~Ls~-NqL 434 (788)
T PRK15387 377 LP--A------LPSGLKELIVSG---NRLTSLPV-------LPSELKELMVSG-NRLTSLPML--PSGLLSLSVYR-NQL 434 (788)
T ss_pred Cc--c------cccccceEEecC---CcccCCCC-------cccCCCEEEccC-CcCCCCCcc--hhhhhhhhhcc-Ccc
Confidence 22 1 235677888877 46666665 446788888887 677777721 24677778877 467
Q ss_pred CcCCCC-CCCCCcceEEeeCCc
Q 039619 322 QKFPDN-GLPTSLLRLEIYGCP 342 (459)
Q Consensus 322 ~~lp~~-~l~~sL~~L~i~~c~ 342 (459)
+.+|.. .-+++|+.|++++++
T Consensus 435 t~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 435 TRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cccChHHhhccCCCeEECCCCC
Confidence 777753 125678888888775
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.57 E-value=4e-16 Score=153.16 Aligned_cols=54 Identities=24% Similarity=0.356 Sum_probs=31.0
Q ss_pred CCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC-CCCcceEEee
Q 039619 284 PASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL-PTSLLRLEIY 339 (459)
Q Consensus 284 ~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l-~~sL~~L~i~ 339 (459)
+++|++|++.| |+++.++ .+.++..|++|++.+ +.+.++....+ +..|++|.+.
T Consensus 391 l~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 391 LPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred chhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccceeecccccccchhhhhhhc
Confidence 45666666666 6666666 566666666666655 34555544333 3355555543
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.56 E-value=4.2e-17 Score=161.00 Aligned_cols=296 Identities=18% Similarity=0.159 Sum_probs=168.2
Q ss_pred eEeceeeccCCCCCCCC-CCCC-------CCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCccc
Q 039619 5 VRFGLVCGVGGGGGASS-SRFP-------KRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTA 76 (459)
Q Consensus 5 ~~~~l~~~~~~~~~~~~-~~f~-------~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~ 76 (459)
..-.+|.|++|.|+--. ..|| +++-|.+.... +.... .....+.+|++|++..+.-.+-
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-L~~vP-eEL~~lqkLEHLs~~HN~L~~v----------- 70 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-LEQVP-EELSRLQKLEHLSMAHNQLISV----------- 70 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhh-hhhCh-HHHHHHhhhhhhhhhhhhhHhh-----------
Confidence 34678889998886432 3465 23333332211 11111 1224577888888876643210
Q ss_pred CCCCCCCCCCCCCCcCceEEeCCCCCCCCC--ccc--------eeEEEEecCCCCccccCCccccccCcEEEeecCCCce
Q 039619 77 DPGKRSNNGPVSVTLKDPEVLDCPVCYEPL--TIP--------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLA 146 (459)
Q Consensus 77 ~~~~~~~~~~lp~~L~~L~l~~c~~l~~l~--~lp--------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~ 146 (459)
......+| .||.+.+... +++ .+| |..|+|++ +.++++|......+++-+|++++ +++.
T Consensus 71 ----hGELs~Lp-~LRsv~~R~N----~LKnsGiP~diF~l~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~-N~Ie 139 (1255)
T KOG0444|consen 71 ----HGELSDLP-RLRSVIVRDN----NLKNSGIPTDIFRLKDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSY-NNIE 139 (1255)
T ss_pred ----hhhhccch-hhHHHhhhcc----ccccCCCCchhcccccceeeecch-hhhhhcchhhhhhcCcEEEEccc-Cccc
Confidence 01223444 6666666652 222 233 66777766 56777776556666777777776 5677
Q ss_pred eecc--ccccccccceEEeecccCCccccccCCCCCcccEEeecccc-------------------------CcccCccc
Q 039619 147 FLSL--RGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQ-------------------------NLKALPNG 199 (459)
Q Consensus 147 ~l~~--~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~-------------------------~l~~lp~~ 199 (459)
.||. .-++ +-|-.|++++ +.++.+|+.+..+.+|++|.+++++ -+..+|.+
T Consensus 140 tIPn~lfinL-tDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts 217 (1255)
T KOG0444|consen 140 TIPNSLFINL-TDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS 217 (1255)
T ss_pred cCCchHHHhh-HhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc
Confidence 7762 2344 5555666665 3556666555555555555555542 12234555
Q ss_pred CCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCC
Q 039619 200 LRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKD 278 (459)
Q Consensus 200 l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~ 278 (459)
+..+.+|..++++ |+++..+|+. -...+|+.|++++|+++... -..+...+|++|+++. +.+..+|...
T Consensus 218 ld~l~NL~dvDlS-~N~Lp~vPecly~l~~LrrLNLS~N~iteL~-----~~~~~W~~lEtLNlSr---NQLt~LP~av- 287 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLS-ENNLPIVPECLYKLRNLRRLNLSGNKITELN-----MTEGEWENLETLNLSR---NQLTVLPDAV- 287 (1255)
T ss_pred hhhhhhhhhcccc-ccCCCcchHHHhhhhhhheeccCcCceeeee-----ccHHHHhhhhhhcccc---chhccchHHH-
Confidence 5556666666664 3455555544 22566777777776655321 0223445667777776 5677777655
Q ss_pred CCccCCCCcceEEeecCCCC--CccC-CCCCCCCCCEEeccCCCCCCcCCCCCC-CCCcceEEeeCC
Q 039619 279 TGKALPASLKHLSIWNFPNL--ERIS-SIENLTSFESLQLCCCPKLQKFPDNGL-PTSLLRLEIYGC 341 (459)
Q Consensus 279 ~~~~~~~~L~~L~l~~c~~l--~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l-~~sL~~L~i~~c 341 (459)
+.+++|+.|.+.+ |++ +-+| +++.+..|+.+...+ ++++-+|+... +..|+.|.++..
T Consensus 288 ---cKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 288 ---CKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHN 349 (1255)
T ss_pred ---hhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhccccc
Confidence 4667777777766 554 3566 777777777777776 56777776211 566777776544
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=6.1e-14 Score=148.10 Aligned_cols=230 Identities=21% Similarity=0.239 Sum_probs=174.2
Q ss_pred CCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCCC
Q 039619 24 FPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVCY 103 (459)
Q Consensus 24 f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l~ 103 (459)
.++|+.|++.+..- ..+.. ..++|+.|.+.++... .+..+|++|++|+++++
T Consensus 221 ~~~L~~L~L~~N~L-t~LP~----lp~~Lk~LdLs~N~Lt-------------------sLP~lp~sL~~L~Ls~N---- 272 (788)
T PRK15387 221 PAHITTLVIPDNNL-TSLPA----LPPELRTLEVSGNQLT-------------------SLPVLPPGLLELSIFSN---- 272 (788)
T ss_pred hcCCCEEEccCCcC-CCCCC----CCCCCcEEEecCCccC-------------------cccCcccccceeeccCC----
Confidence 34788888876422 22221 3578999998876311 11235679999999995
Q ss_pred CCCccc-----eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCC
Q 039619 104 EPLTIP-----VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDD 178 (459)
Q Consensus 104 ~l~~lp-----L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~ 178 (459)
.+..+| |+.|++++ +.++.+|. .+++|+.|+++++ .+..+|. +|.+|+.|++++| .++.+|..
T Consensus 273 ~L~~Lp~lp~~L~~L~Ls~-N~Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~---lp~~L~~L~Ls~N-~L~~LP~l--- 340 (788)
T PRK15387 273 PLTHLPALPSGLCKLWIFG-NQLTSLPV---LPPGLQELSVSDN-QLASLPA---LPSELCKLWAYNN-QLTSLPTL--- 340 (788)
T ss_pred chhhhhhchhhcCEEECcC-Cccccccc---cccccceeECCCC-ccccCCC---CcccccccccccC-cccccccc---
Confidence 455555 99999988 57888883 4679999999984 7888763 4478999999985 67777752
Q ss_pred CCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccC
Q 039619 179 NTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVR 258 (459)
Q Consensus 179 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~ 258 (459)
..+|+.|+++++ .++.+|.. ..+|+.|++++ +.+..+|. .+.+|+.|++++|.+.... ...++|+
T Consensus 341 p~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~-N~L~~LP~--l~~~L~~LdLs~N~Lt~LP--------~l~s~L~ 405 (788)
T PRK15387 341 PSGLQELSVSDN-QLASLPTL---PSELYKLWAYN-NRLTSLPA--LPSGLKELIVSGNRLTSLP--------VLPSELK 405 (788)
T ss_pred ccccceEecCCC-ccCCCCCC---Ccccceehhhc-cccccCcc--cccccceEEecCCcccCCC--------CcccCCC
Confidence 358999999986 77788753 35788899977 46777775 4678999999998887432 1246899
Q ss_pred EEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCC
Q 039619 259 LLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCP 319 (459)
Q Consensus 259 ~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~ 319 (459)
.|++++ +.+..+|. .+.+|+.|++++ |.++.+| .+..+++|+.|++++++
T Consensus 406 ~LdLS~---N~LssIP~-------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 406 ELMVSG---NRLTSLPM-------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred EEEccC---CcCCCCCc-------chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 999999 57888886 456899999999 8999999 88899999999999965
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=2.5e-13 Score=144.16 Aligned_cols=197 Identities=18% Similarity=0.355 Sum_probs=85.2
Q ss_pred eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeecc
Q 039619 110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFI 189 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 189 (459)
|+.|++++ +.++.+|... ..+|++|+++++ .++.+|. .+|++|+.|++++| .+..+|..+. .+|+.|++++
T Consensus 201 L~~L~Ls~-N~LtsLP~~l--~~nL~~L~Ls~N-~LtsLP~--~l~~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 201 ITTLILDN-NELKSLPENL--QGNIKTLYANSN-QLTSIPA--TLPDTIQEMELSIN-RITELPERLP--SALQSLDLFH 271 (754)
T ss_pred CcEEEecC-CCCCcCChhh--ccCCCEEECCCC-ccccCCh--hhhccccEEECcCC-ccCcCChhHh--CCCCEEECcC
Confidence 55555544 3444554221 235555555542 3444442 12245555555553 3444444332 3455555543
Q ss_pred ccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCC
Q 039619 190 CQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCG 269 (459)
Q Consensus 190 c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~ 269 (459)
+ .+..+|..+. ++|+.|++++| +++.+|. .++++|+.|++++|.++.. +. .-.++|+.|++++ +.
T Consensus 272 N-~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~-~lp~sL~~L~Ls~N~Lt~L--P~-----~l~~sL~~L~Ls~---N~ 336 (754)
T PRK15370 272 N-KISCLPENLP--EELRYLSVYDN-SIRTLPA-HLPSGITHLNVQSNSLTAL--PE-----TLPPGLKTLEAGE---NA 336 (754)
T ss_pred C-ccCccccccC--CCCcEEECCCC-ccccCcc-cchhhHHHHHhcCCccccC--Cc-----cccccceeccccC---Cc
Confidence 3 4444444332 34555555443 3444432 2234455555555444321 11 1123455555544 23
Q ss_pred ceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEEeeCC
Q 039619 270 VVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGC 341 (459)
Q Consensus 270 l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c 341 (459)
+..+|.. .+++|+.|++++ ++++.+| .+. ++|++|++++| .+..+|.. ++.+|+.|+++++
T Consensus 337 Lt~LP~~------l~~sL~~L~Ls~-N~L~~LP~~lp--~~L~~LdLs~N-~Lt~LP~~-l~~sL~~LdLs~N 398 (754)
T PRK15370 337 LTSLPAS------LPPELQVLDVSK-NQITVLPETLP--PTITTLDVSRN-ALTNLPEN-LPAALQIMQASRN 398 (754)
T ss_pred cccCChh------hcCcccEEECCC-CCCCcCChhhc--CCcCEEECCCC-cCCCCCHh-HHHHHHHHhhccC
Confidence 4444432 234555555554 3444444 221 34555555543 34444431 2334444444443
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=4.5e-13 Score=142.19 Aligned_cols=220 Identities=17% Similarity=0.294 Sum_probs=170.5
Q ss_pred CCCCCcCceEEeCCCCCCCCCccc------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccc
Q 039619 86 PVSVTLKDPEVLDCPVCYEPLTIP------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALK 159 (459)
Q Consensus 86 ~lp~~L~~L~l~~c~~l~~l~~lp------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~ 159 (459)
.+|++|+.|++++ +.+..+| |++|++++ +.++.+|. .++.+|+.|++++| .+..+|. .+|.+|+
T Consensus 196 ~Ip~~L~~L~Ls~----N~LtsLP~~l~~nL~~L~Ls~-N~LtsLP~--~l~~~L~~L~Ls~N-~L~~LP~--~l~s~L~ 265 (754)
T PRK15370 196 CIPEQITTLILDN----NELKSLPENLQGNIKTLYANS-NQLTSIPA--TLPDTIQEMELSIN-RITELPE--RLPSALQ 265 (754)
T ss_pred ccccCCcEEEecC----CCCCcCChhhccCCCEEECCC-CccccCCh--hhhccccEEECcCC-ccCcCCh--hHhCCCC
Confidence 3677899999999 5677888 99999987 56888884 34568999999995 5778774 3447899
Q ss_pred eEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcc
Q 039619 160 HLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKI 239 (459)
Q Consensus 160 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l 239 (459)
.|++++ +.+..+|..+. ++|+.|++++| .++.+|..+. ++|+.|++++| .+..+|. ..+++|+.|+++++.+
T Consensus 266 ~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~-~l~~sL~~L~Ls~N~L 337 (754)
T PRK15370 266 SLDLFH-NKISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSN-SLTALPE-TLPPGLKTLEAGENAL 337 (754)
T ss_pred EEECcC-CccCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcCC-ccccCCc-cccccceeccccCCcc
Confidence 999986 57888887664 68999999997 7788876543 57999999885 5667764 3568999999999887
Q ss_pred cccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCC
Q 039619 240 YKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCC 318 (459)
Q Consensus 240 ~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c 318 (459)
+.. +. .+ .++|+.|++++ +.+..+|.. .+++|+.|++++ +.+..+| .+. .+|+.|++++|
T Consensus 338 t~L--P~---~l--~~sL~~L~Ls~---N~L~~LP~~------lp~~L~~LdLs~-N~Lt~LP~~l~--~sL~~LdLs~N 398 (754)
T PRK15370 338 TSL--PA---SL--PPELQVLDVSK---NQITVLPET------LPPTITTLDVSR-NALTNLPENLP--AALQIMQASRN 398 (754)
T ss_pred ccC--Ch---hh--cCcccEEECCC---CCCCcCChh------hcCCcCEEECCC-CcCCCCCHhHH--HHHHHHhhccC
Confidence 642 22 22 37999999999 467778864 457999999999 6888888 543 47999999984
Q ss_pred CCCCcCCCC-----CCCCCcceEEeeCCch
Q 039619 319 PKLQKFPDN-----GLPTSLLRLEIYGCPL 343 (459)
Q Consensus 319 ~~l~~lp~~-----~l~~sL~~L~i~~c~~ 343 (459)
++..+|.. ...+++..|++.+.|-
T Consensus 399 -~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 399 -NLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred -CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 67788752 1136788999999874
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.31 E-value=7.4e-15 Score=138.55 Aligned_cols=228 Identities=20% Similarity=0.201 Sum_probs=134.2
Q ss_pred CcCceEEeCCCCCCCCCccc--------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeecc-ccccccccce
Q 039619 90 TLKDPEVLDCPVCYEPLTIP--------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL-RGNLSKALKH 160 (459)
Q Consensus 90 ~L~~L~l~~c~~l~~l~~lp--------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~-~~~lp~~L~~ 160 (459)
.|.+|++.+ +.+..+| ++.|+.+. +++..+|+.+....+|++|++++ +.++++|. .+.+ ..|+.
T Consensus 69 ~l~vl~~~~----n~l~~lp~aig~l~~l~~l~vs~-n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~-~~l~d 141 (565)
T KOG0472|consen 69 CLTVLNVHD----NKLSQLPAAIGELEALKSLNVSH-NKLSELPEQIGSLISLVKLDCSS-NELKELPDSIGRL-LDLED 141 (565)
T ss_pred ceeEEEecc----chhhhCCHHHHHHHHHHHhhccc-chHhhccHHHhhhhhhhhhhccc-cceeecCchHHHH-hhhhh
Confidence 677788877 5677777 77777776 66777777776666888888777 45555552 2344 55666
Q ss_pred EEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcc
Q 039619 161 LYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKI 239 (459)
Q Consensus 161 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l 239 (459)
|+..+ +++.++|+++..+.+|..|++.++ +++.+|+..-.++.|++|+... +.++.+|.. +.+.+|+.|++..|++
T Consensus 142 l~~~~-N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 142 LDATN-NQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKI 218 (565)
T ss_pred hhccc-cccccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhccc
Confidence 66555 456666666666666666666664 4445554444456666665533 345555544 5555666666665555
Q ss_pred cccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCC
Q 039619 240 YKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCC 318 (459)
Q Consensus 240 ~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c 318 (459)
.... .|..+..|++|.++. +.++.+|.+.. ..+++|..|++++ ++++++| ++.-+.+|++||+++
T Consensus 219 ~~lP------ef~gcs~L~Elh~g~---N~i~~lpae~~---~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSN- 284 (565)
T KOG0472|consen 219 RFLP------EFPGCSLLKELHVGE---NQIEMLPAEHL---KHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSN- 284 (565)
T ss_pred ccCC------CCCccHHHHHHHhcc---cHHHhhHHHHh---cccccceeeeccc-cccccCchHHHHhhhhhhhcccC-
Confidence 5332 455556666666655 45555555431 2455666666666 6666666 555566666666665
Q ss_pred CCCCcCCCC-CCCCCcceEEeeCCc
Q 039619 319 PKLQKFPDN-GLPTSLLRLEIYGCP 342 (459)
Q Consensus 319 ~~l~~lp~~-~l~~sL~~L~i~~c~ 342 (459)
+.+..+|-. |-+ .|+.|.+.|.|
T Consensus 285 N~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 285 NDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred CccccCCcccccc-eeeehhhcCCc
Confidence 455555531 112 45555555554
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.28 E-value=5.6e-14 Score=118.18 Aligned_cols=156 Identities=17% Similarity=0.289 Sum_probs=95.5
Q ss_pred cccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEE
Q 039619 156 KALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCI 234 (459)
Q Consensus 156 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l 234 (459)
.++..|.++. +.+..+|..+..+.+|+.|+++++ .++.+|..+..++.|+.|++. .+++..+|.+ +.++-|+.|++
T Consensus 33 s~ITrLtLSH-NKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvg-mnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVG-MNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhccc-CceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecc-hhhhhcCccccCCCchhhhhhc
Confidence 3444445544 344445555555555555555543 445555555555555555552 3344444433 34455555555
Q ss_pred ecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEE
Q 039619 235 DYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESL 313 (459)
Q Consensus 235 ~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L 313 (459)
..+++.....|. .+..++.|+.|.+++ +..+.+|.+.| .+++|+.|.+++ +.+-++| .++.++.|++|
T Consensus 110 tynnl~e~~lpg---nff~m~tlralyl~d---ndfe~lp~dvg----~lt~lqil~lrd-ndll~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 110 TYNNLNENSLPG---NFFYMTTLRALYLGD---NDFEILPPDVG----KLTNLQILSLRD-NDLLSLPKEIGDLTRLREL 178 (264)
T ss_pred cccccccccCCc---chhHHHHHHHHHhcC---CCcccCChhhh----hhcceeEEeecc-CchhhCcHHHHHHHHHHHH
Confidence 554443222122 455677788888887 67888888775 788888888888 7888888 88888999999
Q ss_pred eccCCCCCCcCCC
Q 039619 314 QLCCCPKLQKFPD 326 (459)
Q Consensus 314 ~l~~c~~l~~lp~ 326 (459)
.|.+ ++++.+|.
T Consensus 179 hiqg-nrl~vlpp 190 (264)
T KOG0617|consen 179 HIQG-NRLTVLPP 190 (264)
T ss_pred hccc-ceeeecCh
Confidence 9988 56666553
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.27 E-value=3.9e-14 Score=133.72 Aligned_cols=207 Identities=22% Similarity=0.229 Sum_probs=169.7
Q ss_pred CcCceEEeCCCCCCCCCccc--------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccc-cccccccce
Q 039619 90 TLKDPEVLDCPVCYEPLTIP--------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLR-GNLSKALKH 160 (459)
Q Consensus 90 ~L~~L~l~~c~~l~~l~~lp--------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~-~~lp~~L~~ 160 (459)
.++.|+.+. +++..+| |+.|+++. +.+..+++.++-+..|..++..+ +++..+|.. +.+ .+|..
T Consensus 92 ~l~~l~vs~----n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~-~~l~~ 164 (565)
T KOG0472|consen 92 ALKSLNVSH----NKLSELPEQIGSLISLVKLDCSS-NELKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNL-SKLSK 164 (565)
T ss_pred HHHHhhccc----chHhhccHHHhhhhhhhhhhccc-cceeecCchHHHHhhhhhhhccc-cccccCchHHHHH-HHHHH
Confidence 467778887 6777887 88888877 67778887777777888888877 677777733 455 78888
Q ss_pred EEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCccc
Q 039619 161 LYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIY 240 (459)
Q Consensus 161 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~ 240 (459)
|++.+ +.++.+|+..-+++.|++|+...+ .++.+|..++.+.+|+.|++.. +++..+|+.+-++.|++|++..|.++
T Consensus 165 l~~~~-n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~N~i~ 241 (565)
T KOG0472|consen 165 LDLEG-NKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRR-NKIRFLPEFPGCSLLKELHVGENQIE 241 (565)
T ss_pred hhccc-cchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhh-cccccCCCCCccHHHHHHHhcccHHH
Confidence 88888 577888777667999999998664 7889999999999999999987 57888887667888999999888776
Q ss_pred ccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCC
Q 039619 241 KPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCP 319 (459)
Q Consensus 241 ~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~ 319 (459)
-.. .+ .+.++++|..|++.+ ++++++|.+. ..+.+|++|++++ +.+..+| +++++ .|+.|.+.|+|
T Consensus 242 ~lp-ae---~~~~L~~l~vLDLRd---Nklke~Pde~----clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 242 MLP-AE---HLKHLNSLLVLDLRD---NKLKEVPDEI----CLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred hhH-HH---Hhcccccceeeeccc---cccccCchHH----HHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCc
Confidence 433 33 567899999999998 7999999987 5788999999999 9999999 99998 89999998854
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.19 E-value=6e-13 Score=137.55 Aligned_cols=215 Identities=23% Similarity=0.307 Sum_probs=106.7
Q ss_pred eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccc-cccccccceEEeecccCCccccccCCCCCcccEEeec
Q 039619 110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLR-GNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIF 188 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~-~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 188 (459)
|++++++. +.+..+|++..-+.+|+.+++.+ +.+..+|.. ... .+|+.|.+..| .++.+|+....+++|++|++.
T Consensus 243 l~~~dis~-n~l~~lp~wi~~~~nle~l~~n~-N~l~~lp~ri~~~-~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 243 LQYLDISH-NNLSNLPEWIGACANLEALNANH-NRLVALPLRISRI-TSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ceeeecch-hhhhcchHHHHhcccceEecccc-hhHHhhHHHHhhh-hhHHHHHhhhh-hhhhCCCcccccceeeeeeeh
Confidence 66666655 55566665555556666666655 445555522 223 55566665553 455566555556666666665
Q ss_pred cccCcccCcccCC--------------------------CCCCccEEeeccCCCCc--cccCCCCCCCccEEEEecCccc
Q 039619 189 ICQNLKALPNGLR--------------------------NLTSLQYLLIQDCPTIG--SFTANCFPTNLASVCIDYEKIY 240 (459)
Q Consensus 189 ~c~~l~~lp~~l~--------------------------~l~~L~~L~l~~c~~l~--~lp~~~~~~~L~~L~l~~~~l~ 240 (459)
.+ ++..+|+.+- .+..|+.|.+.++ .++ .+|......+|+.|++++|.+.
T Consensus 319 ~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN-~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 319 SN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN-HLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC-cccccchhhhccccceeeeeecccccc
Confidence 54 4444544221 1222333333331 111 1222222344555555554443
Q ss_pred ccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCC
Q 039619 241 KPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPK 320 (459)
Q Consensus 241 ~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~ 320 (459)
... .. .+.++..|++|+++| +.++.+|... ..+..|++|...+ |.+..+|.+..++.|+.+|++ |++
T Consensus 397 ~fp-as---~~~kle~LeeL~LSG---NkL~~Lp~tv----a~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS-~N~ 463 (1081)
T KOG0618|consen 397 SFP-AS---KLRKLEELEELNLSG---NKLTTLPDTV----ANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLS-CNN 463 (1081)
T ss_pred cCC-HH---HHhchHHhHHHhccc---chhhhhhHHH----HhhhhhHHHhhcC-CceeechhhhhcCcceEEecc-cch
Confidence 111 11 334444455555555 3444444433 2344445544444 455555555566677777775 355
Q ss_pred CCcCCC-CCCC-CCcceEEeeCCch
Q 039619 321 LQKFPD-NGLP-TSLLRLEIYGCPL 343 (459)
Q Consensus 321 l~~lp~-~~l~-~sL~~L~i~~c~~ 343 (459)
++.+-- ...| ++|++|+++|.+.
T Consensus 464 L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 464 LSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhhhhhCCCcccceeeccCCcc
Confidence 655432 2345 6777777777763
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.19 E-value=8.8e-13 Score=136.34 Aligned_cols=220 Identities=20% Similarity=0.256 Sum_probs=157.1
Q ss_pred ccccCcEEEeecCCCceeeccc-cccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccE
Q 039619 130 LPATLENIYVDRCSKLAFLSLR-GNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQY 208 (459)
Q Consensus 130 ~~~~L~~L~l~~c~~l~~l~~~-~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~ 208 (459)
.+.+|++++++. +++..+|.+ +.+ .+|+.+++.. +.+..+|..+....+|+.|.+..| .++.+|.....+++|++
T Consensus 239 ~p~nl~~~dis~-n~l~~lp~wi~~~-~nle~l~~n~-N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~t 314 (1081)
T KOG0618|consen 239 VPLNLQYLDISH-NNLSNLPEWIGAC-ANLEALNANH-NRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRT 314 (1081)
T ss_pred ccccceeeecch-hhhhcchHHHHhc-ccceEecccc-hhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeee
Confidence 445777777766 466666622 445 6777777766 456777777777777777777776 67788888888999999
Q ss_pred EeeccCCCCccccCCC---------------------------CCCCccEEEEecCcccccccccCCCCCCCCCccCEEE
Q 039619 209 LLIQDCPTIGSFTANC---------------------------FPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLT 261 (459)
Q Consensus 209 L~l~~c~~l~~lp~~~---------------------------~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~ 261 (459)
|++.. +++..+|+.. ..+.|+.|++.+|.+++.. -. .+.++.+|+.|+
T Consensus 315 LdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c-~p---~l~~~~hLKVLh 389 (1081)
T KOG0618|consen 315 LDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC-FP---VLVNFKHLKVLH 389 (1081)
T ss_pred eeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc-hh---hhccccceeeee
Confidence 99976 4555555421 1235666667777776654 22 567889999999
Q ss_pred EeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEEeeC
Q 039619 262 LFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYG 340 (459)
Q Consensus 262 l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~ 340 (459)
+++ +.+.+||... ...+..|++|+++| |+++.+| .+..+..|++|...+ +++..+|+...++.|+.+|++
T Consensus 390 Lsy---NrL~~fpas~---~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS- 460 (1081)
T KOG0618|consen 390 LSY---NRLNSFPASK---LRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLS- 460 (1081)
T ss_pred ecc---cccccCCHHH---HhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEEecc-
Confidence 998 6899999864 13567899999999 9999999 889999999999977 688999976568999999996
Q ss_pred CchhHHhhhcCcCCccccccCCCeEEeCcee
Q 039619 341 CPLIEERFEKDKGQYWSLIADIPCVRIDCHY 371 (459)
Q Consensus 341 c~~L~~~~~~~~~~~~~~i~~i~~l~~~~~~ 371 (459)
|..|...... ....|+ ++.++.+.+..
T Consensus 461 ~N~L~~~~l~-~~~p~p---~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 461 CNNLSEVTLP-EALPSP---NLKYLDLSGNT 487 (1081)
T ss_pred cchhhhhhhh-hhCCCc---ccceeeccCCc
Confidence 5555554332 122343 44556665543
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.14 E-value=8.7e-13 Score=111.08 Aligned_cols=154 Identities=18% Similarity=0.298 Sum_probs=109.3
Q ss_pred ccCcEEEeecCCCceeecc-ccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEe
Q 039619 132 ATLENIYVDRCSKLAFLSL-RGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLL 210 (459)
Q Consensus 132 ~~L~~L~l~~c~~l~~l~~-~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~ 210 (459)
.+...|.+++ ++++.+|. ...+ .+|+.|++.+ +.++++|.++..+++|+.|++.- +.+..+|.+++.++.|+.|+
T Consensus 33 s~ITrLtLSH-NKl~~vppnia~l-~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 33 SNITRLTLSH-NKLTVVPPNIAEL-KNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhccc-CceeecCCcHHHh-hhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhh
Confidence 4556666666 45555552 2445 6777777776 46777777777778888887764 36667777888888888888
Q ss_pred eccCCCC-ccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcc
Q 039619 211 IQDCPTI-GSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLK 288 (459)
Q Consensus 211 l~~c~~l-~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~ 288 (459)
+.+.+.- ..+|.. ..++.|+-|+++++.++-. |. .++++++|+.|.+.+ +++-++|.+++ .+..|+
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~l--p~---dvg~lt~lqil~lrd---ndll~lpkeig----~lt~lr 176 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEIL--PP---DVGKLTNLQILSLRD---NDLLSLPKEIG----DLTRLR 176 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccC--Ch---hhhhhcceeEEeecc---CchhhCcHHHH----HHHHHH
Confidence 7664322 345544 2366777777777666532 22 678999999999998 68888998875 788999
Q ss_pred eEEeecCCCCCccC
Q 039619 289 HLSIWNFPNLERIS 302 (459)
Q Consensus 289 ~L~l~~c~~l~~l~ 302 (459)
+|.+.+ +.++.+|
T Consensus 177 elhiqg-nrl~vlp 189 (264)
T KOG0617|consen 177 ELHIQG-NRLTVLP 189 (264)
T ss_pred HHhccc-ceeeecC
Confidence 999999 8898888
No 19
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.89 E-value=1.3e-08 Score=99.59 Aligned_cols=90 Identities=24% Similarity=0.502 Sum_probs=62.1
Q ss_pred ccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEee
Q 039619 132 ATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLI 211 (459)
Q Consensus 132 ~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 211 (459)
.+++.|++++| .++.+| .+|++|++|.+++|..++.+|..+ .++|+.|++++|..+..+|. +|+.|.+
T Consensus 52 ~~l~~L~Is~c-~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L 119 (426)
T PRK15386 52 RASGRLYIKDC-DIESLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEI 119 (426)
T ss_pred cCCCEEEeCCC-CCcccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEe
Confidence 57888888887 788887 466788888888888888887655 36788888888877776664 3555666
Q ss_pred ccCCCCccccCCCCCCCccEEEEec
Q 039619 212 QDCPTIGSFTANCFPTNLASVCIDY 236 (459)
Q Consensus 212 ~~c~~l~~lp~~~~~~~L~~L~l~~ 236 (459)
. +.....++ .+|++|+.|.+.+
T Consensus 120 ~-~n~~~~L~--~LPssLk~L~I~~ 141 (426)
T PRK15386 120 K-GSATDSIK--NVPNGLTSLSINS 141 (426)
T ss_pred C-CCCCcccc--cCcchHhheeccc
Confidence 4 23332222 3456677776644
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.86 E-value=2.1e-09 Score=116.31 Aligned_cols=226 Identities=19% Similarity=0.235 Sum_probs=145.6
Q ss_pred eeEEEEecCCCCccccCCccccccCcEEEeecCCC-ceeecc--ccccccccceEEeecccCCccccccCCCCCcccEEe
Q 039619 110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSK-LAFLSL--RGNLSKALKHLYIISCSNLESIAEGLDDNTSLETME 186 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~-l~~l~~--~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~ 186 (459)
.+...+.+ +.+..++.....+ .|++|-+.+... +..++. ...+ +.|+.|++++|..+..+|..++.+-+|++|+
T Consensus 525 ~rr~s~~~-~~~~~~~~~~~~~-~L~tLll~~n~~~l~~is~~ff~~m-~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 525 VRRMSLMN-NKIEHIAGSSENP-KLRTLLLQRNSDWLLEISGEFFRSL-PLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred eeEEEEec-cchhhccCCCCCC-ccceEEEeecchhhhhcCHHHHhhC-cceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 55555543 4555555333333 788888777442 555553 4567 8888888888888888888888888888888
Q ss_pred eccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCc--ccccccccCCCCCCCCCccCEEEEe
Q 039619 187 IFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEK--IYKPLILERGPGLHRFTSVRLLTLF 263 (459)
Q Consensus 187 l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~--l~~~~~~~~~~~l~~l~~L~~L~l~ 263 (459)
++++ .+..+|.+++++..|.+|++.....+..++.. ..+++|++|.+.... ..... .. .+.++.+|+.+.+.
T Consensus 602 L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~-l~---el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 602 LSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLL-LK---ELENLEHLENLSIT 676 (889)
T ss_pred ccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhh-HH---hhhcccchhhheee
Confidence 8876 67788888888888888888877776666555 337888888887722 11111 11 34556666666665
Q ss_pred CCcCCC-------------------------ceecCCCCCCCccCCCCcceEEeecCCCCCccC----C--CCC-CCCCC
Q 039619 264 GGECCG-------------------------VVSFPPEKDTGKALPASLKHLSIWNFPNLERIS----S--IEN-LTSFE 311 (459)
Q Consensus 264 ~~~c~~-------------------------l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~----~--l~~-l~~L~ 311 (459)
.. .. ....+... ..+.+|+.|.+.+|...+... . ... ++++.
T Consensus 677 ~~--s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~----~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~ 750 (889)
T KOG4658|consen 677 IS--SVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSL----GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLS 750 (889)
T ss_pred cc--hhHhHhhhhhhHHHHHHhHhhhhcccccceeeccc----ccccCcceEEEEcCCCchhhcccccccchhhhHHHHH
Confidence 41 11 01111111 256678888888876543221 1 111 45677
Q ss_pred EEeccCCCCCCcCCCCCCCCCcceEEeeCCchhHHhhh
Q 039619 312 SLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIEERFE 349 (459)
Q Consensus 312 ~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c~~L~~~~~ 349 (459)
.+.+.+|..++.+....++++|+.|.+..|+.++....
T Consensus 751 ~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 751 KVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred HHHhhccccccccchhhccCcccEEEEecccccccCCC
Confidence 77777777777766555688999999999887776544
No 21
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.83 E-value=7.3e-11 Score=112.52 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=47.0
Q ss_pred CCCcceEEeecCCCCCccC---CCCCCCCCCEEeccCCCCCCcCCCCC------CCCCcceEEeeCCchhHHhhhcCcCC
Q 039619 284 PASLKHLSIWNFPNLERIS---SIENLTSFESLQLCCCPKLQKFPDNG------LPTSLLRLEIYGCPLIEERFEKDKGQ 354 (459)
Q Consensus 284 ~~~L~~L~l~~c~~l~~l~---~l~~l~~L~~L~l~~c~~l~~lp~~~------l~~sL~~L~i~~c~~L~~~~~~~~~~ 354 (459)
.+.|+.+++.+|..+..-. --.+++.|+.|.+++|..+++-.... -...|..+.+++||.+++....
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le---- 420 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE---- 420 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH----
Confidence 3456666655554433221 22345666666666665554431100 1345666666666666554322
Q ss_pred ccccccCCCeEEeCceeeeCHHHHhhhh
Q 039619 355 YWSLIADIPCVRIDCHYVIDPKAQRQLI 382 (459)
Q Consensus 355 ~~~~i~~i~~l~~~~~~~l~~~~~~~~~ 382 (459)
+..+...+++|...+|.....++.+.+.
T Consensus 421 ~l~~c~~Leri~l~~~q~vtk~~i~~~~ 448 (483)
T KOG4341|consen 421 HLSICRNLERIELIDCQDVTKEAISRFA 448 (483)
T ss_pred HHhhCcccceeeeechhhhhhhhhHHHH
Confidence 2222334555666666666555544443
No 22
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.80 E-value=1.3e-10 Score=110.90 Aligned_cols=151 Identities=17% Similarity=0.207 Sum_probs=83.6
Q ss_pred CCCccEEeeccCCCCccccCC---CCCCCccEEEEec-CcccccccccCCCCC-CCCCccCEEEEeCCcCCCcee--cCC
Q 039619 203 LTSLQYLLIQDCPTIGSFTAN---CFPTNLASVCIDY-EKIYKPLILERGPGL-HRFTSVRLLTLFGGECCGVVS--FPP 275 (459)
Q Consensus 203 l~~L~~L~l~~c~~l~~lp~~---~~~~~L~~L~l~~-~~l~~~~~~~~~~~l-~~l~~L~~L~l~~~~c~~l~~--l~~ 275 (459)
+..|+.|+.++|..+...+.. ....+|+.|.+.+ .++++.. .. .+ .+.+.|+.+++.+ |..... +..
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~-ft---~l~rn~~~Le~l~~e~--~~~~~d~tL~s 366 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG-FT---MLGRNCPHLERLDLEE--CGLITDGTLAS 366 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh-hh---hhhcCChhhhhhcccc--cceehhhhHhh
Confidence 556666777666665544432 2356777777766 4343221 00 11 2456677777776 433211 111
Q ss_pred CCCCCccCCCCcceEEeecCCCCCccC------CCCCCCCCCEEeccCCCCCCcCCCCC--CCCCcceEEeeCCchhHHh
Q 039619 276 EKDTGKALPASLKHLSIWNFPNLERIS------SIENLTSFESLQLCCCPKLQKFPDNG--LPTSLLRLEIYGCPLIEER 347 (459)
Q Consensus 276 ~~~~~~~~~~~L~~L~l~~c~~l~~l~------~l~~l~~L~~L~l~~c~~l~~lp~~~--l~~sL~~L~i~~c~~L~~~ 347 (459)
-. ...+.|+.|.++.|..+++.. .-.++..|+.+.+++|+.+.+-..+. ..++|+.+++.+|....+.
T Consensus 367 ls----~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 367 LS----RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKE 442 (483)
T ss_pred hc----cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhh
Confidence 11 145678888888777766552 33456677888888887765432211 2567788888887655543
Q ss_pred hhcCcCCccccccCCCeEEeCc
Q 039619 348 FEKDKGQYWSLIADIPCVRIDC 369 (459)
Q Consensus 348 ~~~~~~~~~~~i~~i~~l~~~~ 369 (459)
-.. +-.+|.|++++..
T Consensus 443 ~i~------~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 443 AIS------RFATHLPNIKVHA 458 (483)
T ss_pred hhH------HHHhhCccceehh
Confidence 221 2234667666653
No 23
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.75 E-value=3.9e-08 Score=96.29 Aligned_cols=55 Identities=24% Similarity=0.387 Sum_probs=24.6
Q ss_pred CcCceEEeCCCCCCCCCccc--eeEEEEecCCCCccccCCccccccCcEEEeecCCCcee
Q 039619 90 TLKDPEVLDCPVCYEPLTIP--VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAF 147 (459)
Q Consensus 90 ~L~~L~l~~c~~l~~l~~lp--L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~ 147 (459)
++++|++++| .+..+..+| |++|.+.+|..++.+|. .++.+|++|++++|..+..
T Consensus 53 ~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~--~LP~nLe~L~Ls~Cs~L~s 109 (426)
T PRK15386 53 ASGRLYIKDC-DIESLPVLPNELTEITIENCNNLTTLPG--SIPEGLEKLTVCHCPEISG 109 (426)
T ss_pred CCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCc--hhhhhhhheEccCcccccc
Confidence 4555555554 222222333 55555555555544442 1234455555555444433
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.65 E-value=1.1e-09 Score=103.95 Aligned_cols=239 Identities=17% Similarity=0.215 Sum_probs=145.6
Q ss_pred CCCCCCcCceEEeCCCCCCCCCccc---------eeEEEEecCCCCccccCCc-cccccCcEEEeecCCCceeecc--cc
Q 039619 85 GPVSVTLKDPEVLDCPVCYEPLTIP---------VYQLQIIPCPSLTSLWSKS-ELPATLENIYVDRCSKLAFLSL--RG 152 (459)
Q Consensus 85 ~~lp~~L~~L~l~~c~~l~~l~~lp---------L~~L~l~~c~~l~~lp~~~-~~~~~L~~L~l~~c~~l~~l~~--~~ 152 (459)
..+|+.-..+.++. +.++.+| |++|+|++ +.++.+.+.. .-+.+|..|.+.+.++++++|. .+
T Consensus 63 ~~LP~~tveirLdq----N~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQ----NQISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred ccCCCcceEEEecc----CCcccCChhhccchhhhceecccc-cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 46777888888888 6788887 88888887 6676664221 2234677777777678888883 35
Q ss_pred ccccccceEEeecccCCccc-cccCCCCCcccEEeeccccCcccCcc-cCCCCCCccEEeeccCCCC-----c-------
Q 039619 153 NLSKALKHLYIISCSNLESI-AEGLDDNTSLETMEIFICQNLKALPN-GLRNLTSLQYLLIQDCPTI-----G------- 218 (459)
Q Consensus 153 ~lp~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l-----~------- 218 (459)
.+ .+|+.|.+.-+ .+..+ .+.+..+++|..|.+.++ .+..++. .+..+.+++.+.+...+.+ .
T Consensus 138 gL-~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 138 GL-SSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred hH-HHHHHHhcChh-hhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence 56 66666666543 23333 234556677777777664 5555554 4556666666666543311 0
Q ss_pred -----------------------cccCCCCCCCccEE--EEec-CcccccccccCCCCCCCCCccCEEEEeCCcCCCcee
Q 039619 219 -----------------------SFTANCFPTNLASV--CIDY-EKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVS 272 (459)
Q Consensus 219 -----------------------~lp~~~~~~~L~~L--~l~~-~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~ 272 (459)
.++...+.-.++.+ .+.. .....+. |. -.+..+++|++|++++ +.++.
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~c-P~--~cf~~L~~L~~lnlsn---N~i~~ 288 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSIC-PA--KCFKKLPNLRKLNLSN---NKITR 288 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcC-hH--HHHhhcccceEeccCC---Cccch
Confidence 00000011111111 1111 1111111 11 1467788999999988 57777
Q ss_pred cCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCCc
Q 039619 273 FPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGCP 342 (459)
Q Consensus 273 l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~ 342 (459)
+..++ +.....+++|.+.+ |+++.+. .+.++..|++|++.+ ++++.+....+ ..+|.+|.+-..|
T Consensus 289 i~~~a---Fe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 289 IEDGA---FEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhhh---hcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecC-CeeEEEecccccccceeeeeehccCc
Confidence 66543 12467888888888 8888887 678888999999988 57777765444 4677777776544
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=1.7e-08 Score=92.61 Aligned_cols=123 Identities=17% Similarity=0.235 Sum_probs=84.8
Q ss_pred eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeecc
Q 039619 110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFI 189 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 189 (459)
|++|++++ +.++.+.+++.+.+.++.|++++ +.+..+.....+ ++|+.|++++ +.+.++...-..+.|+++|.+++
T Consensus 286 LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~-N~i~~v~nLa~L-~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 286 LTELDLSG-NLITQIDESVKLAPKLRRLILSQ-NRIRTVQNLAEL-PQLQLLDLSG-NLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhccccc-cchhhhhhhhhhccceeEEeccc-cceeeehhhhhc-ccceEeeccc-chhHhhhhhHhhhcCEeeeehhh
Confidence 88888877 67888887777888888888887 466665544556 7888888877 34555433334566777787777
Q ss_pred ccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeC
Q 039619 190 CQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFG 264 (459)
Q Consensus 190 c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~ 264 (459)
+ .++.+ ++++++-+|..|++++ ++++.+.. .. +++++|.|+.+.+.+
T Consensus 362 N-~iE~L-SGL~KLYSLvnLDl~~-N~Ie~lde----------------------V~---~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 362 N-KIETL-SGLRKLYSLVNLDLSS-NQIEELDE----------------------VN---HIGNLPCLETLRLTG 408 (490)
T ss_pred h-hHhhh-hhhHhhhhheeccccc-cchhhHHH----------------------hc---ccccccHHHHHhhcC
Confidence 5 56665 4667777777777766 34444432 11 678888888888887
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.51 E-value=5.4e-08 Score=105.51 Aligned_cols=81 Identities=26% Similarity=0.243 Sum_probs=48.8
Q ss_pred ccc-eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccc-cccccccceEEeecccCCccccccCCCCCcccE
Q 039619 107 TIP-VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLR-GNLSKALKHLYIISCSNLESIAEGLDDNTSLET 184 (459)
Q Consensus 107 ~lp-L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~-~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~ 184 (459)
.+| |++||+++|..+..+|..++.+-+||+|++++ ..+..+|.. ++| ..|.+|++.....+..+|.....+++|++
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~L-k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNL-KKLIYLNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred hCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHH-HhhheeccccccccccccchhhhcccccE
Confidence 344 66666666666666666666555666666666 356666633 455 66666666665555555444444666666
Q ss_pred Eeecc
Q 039619 185 MEIFI 189 (459)
Q Consensus 185 L~l~~ 189 (459)
|.+..
T Consensus 647 L~l~~ 651 (889)
T KOG4658|consen 647 LRLPR 651 (889)
T ss_pred EEeec
Confidence 66654
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.49 E-value=4.4e-09 Score=99.80 Aligned_cols=221 Identities=16% Similarity=0.230 Sum_probs=112.9
Q ss_pred eeEEEEecCCCCccccCCc-cccccCcEEEeecCCCceeec--cccccccccceEEeecccCCcccccc-CCCCCcccEE
Q 039619 110 VYQLQIIPCPSLTSLWSKS-ELPATLENIYVDRCSKLAFLS--LRGNLSKALKHLYIISCSNLESIAEG-LDDNTSLETM 185 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~~-~~~~~L~~L~l~~c~~l~~l~--~~~~lp~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L 185 (459)
-+.++|.. +.++.+|+.. +-+++|+.|+|++ +++..|. ....+ ++|-+|.+.+.+.++++|.+ ++.+..|+.|
T Consensus 69 tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~GL-~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 69 TVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDAFKGL-ASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred ceEEEecc-CCcccCChhhccchhhhceecccc-cchhhcChHhhhhh-HhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 56666655 5677776433 3335677777766 4566554 12345 55666666665666666543 4556666666
Q ss_pred eeccccCcccC-cccCCCCCCccEEeeccCCCCccccCCCC--CCCccEEEEecCcc-ccccccc--------CCCCCCC
Q 039619 186 EIFICQNLKAL-PNGLRNLTSLQYLLIQDCPTIGSFTANCF--PTNLASVCIDYEKI-YKPLILE--------RGPGLHR 253 (459)
Q Consensus 186 ~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~l~~~~l-~~~~~~~--------~~~~l~~ 253 (459)
.+.-+ .+.-+ ...+..+++|..|.+.+ +.++.++...+ ..+++.+.+..+.+ .+.- .. ....++.
T Consensus 146 llNan-~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCn-L~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 146 LLNAN-HINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCN-LPWLADDLAMNPIETSG 222 (498)
T ss_pred hcChh-hhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccc-cchhhhHHhhchhhccc
Confidence 55443 22222 23445566666666665 34455544322 44555555443221 0000 00 0000011
Q ss_pred CCc----------------------cCEE--EEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCC
Q 039619 254 FTS----------------------VRLL--TLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENL 307 (459)
Q Consensus 254 l~~----------------------L~~L--~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l 307 (459)
... ++.+ .+... |......|... ...+++|++|++++ |.++.+. ++..+
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~-d~~d~~cP~~c---f~~L~~L~~lnlsn-N~i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSE-DFPDSICPAKC---FKKLPNLRKLNLSN-NKITRIEDGAFEGA 297 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccc-cCcCCcChHHH---HhhcccceEeccCC-Cccchhhhhhhcch
Confidence 000 0000 00000 11111111100 01457888888888 8888887 77888
Q ss_pred CCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCCc
Q 039619 308 TSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGCP 342 (459)
Q Consensus 308 ~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~ 342 (459)
..+++|.+.. ++++.+....+ +..|+.|++++..
T Consensus 298 a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 298 AELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred hhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCe
Confidence 8888888877 56777665333 5788888888763
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.45 E-value=7.6e-09 Score=100.63 Aligned_cols=11 Identities=18% Similarity=0.138 Sum_probs=5.1
Q ss_pred cccceEEeecc
Q 039619 156 KALKHLYIISC 166 (459)
Q Consensus 156 ~~L~~L~l~~c 166 (459)
++|++|++++|
T Consensus 81 ~~L~~L~l~~~ 91 (319)
T cd00116 81 CGLQELDLSDN 91 (319)
T ss_pred CceeEEEccCC
Confidence 34444444443
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.42 E-value=8.6e-08 Score=93.20 Aligned_cols=130 Identities=19% Similarity=0.160 Sum_probs=67.8
Q ss_pred cccCcEEEeecCCCceeec-cccccc--cccceEEeecccCC----ccccccCCCC-CcccEEeeccccCc----ccCcc
Q 039619 131 PATLENIYVDRCSKLAFLS-LRGNLS--KALKHLYIISCSNL----ESIAEGLDDN-TSLETMEIFICQNL----KALPN 198 (459)
Q Consensus 131 ~~~L~~L~l~~c~~l~~l~-~~~~lp--~~L~~L~l~~c~~l----~~lp~~l~~l-~~L~~L~l~~c~~l----~~lp~ 198 (459)
.++|++|++++|..-...+ ....++ ++|++|++++|..- ..+...+..+ ++|+.|++++|.-. ..++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 4588888888865432222 112220 23888888876422 1223334455 78888888887422 12333
Q ss_pred cCCCCCCccEEeeccCCCCcc-----ccCC-CCCCCccEEEEecCcccccc---cccCCCCCCCCCccCEEEEeC
Q 039619 199 GLRNLTSLQYLLIQDCPTIGS-----FTAN-CFPTNLASVCIDYEKIYKPL---ILERGPGLHRFTSVRLLTLFG 264 (459)
Q Consensus 199 ~l~~l~~L~~L~l~~c~~l~~-----lp~~-~~~~~L~~L~l~~~~l~~~~---~~~~~~~l~~l~~L~~L~l~~ 264 (459)
.+..+++|++|++++|. +.. ++.. ...++|++|+++++.+.... ... .+..+++|++|++++
T Consensus 160 ~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~---~~~~~~~L~~L~ls~ 230 (319)
T cd00116 160 ALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE---TLASLKSLEVLNLGD 230 (319)
T ss_pred HHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH---HhcccCCCCEEecCC
Confidence 44566778888887754 221 1100 11246666666664443211 011 234556666666666
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.41 E-value=7.5e-09 Score=102.53 Aligned_cols=185 Identities=19% Similarity=0.230 Sum_probs=79.5
Q ss_pred EEEecCCCCccccCCccccccCcEEEeecCCCceeeccc-cccccccceEEeecccCCccccccCCCCCcccEEeecccc
Q 039619 113 LQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLR-GNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQ 191 (459)
Q Consensus 113 L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~-~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 191 (459)
.+++. +.+..+|.....+..|+.+.+.. +.+..+|.. .++ ..|..|+++. +.+..+|..++.|+ |+.|.++++
T Consensus 80 aDlsr-NR~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L-~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sNN- 153 (722)
T KOG0532|consen 80 ADLSR-NRFSELPEEACAFVSLESLILYH-NCIRTIPEAICNL-EALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSNN- 153 (722)
T ss_pred hhccc-cccccCchHHHHHHHHHHHHHHh-ccceecchhhhhh-hHHHHhhhcc-chhhcCChhhhcCc-ceeEEEecC-
Confidence 34433 34444444443333444444433 233344321 233 4444444444 23444444444432 444544443
Q ss_pred CcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCc
Q 039619 192 NLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGV 270 (459)
Q Consensus 192 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l 270 (459)
+++.+|..++.+..|..|+.+.| .+..+|.. +.+.+|+.|.+..|++.... + .+. .-.|..|+++ |+++
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~lp--~---El~-~LpLi~lDfS---cNki 223 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLEDLP--E---ELC-SLPLIRLDFS---CNKI 223 (722)
T ss_pred ccccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhhCC--H---HHh-CCceeeeecc---cCce
Confidence 44455555554455555555433 23333321 22333333333333222111 1 122 1134445554 3566
Q ss_pred eecCCCCCCCccCCCCcceEEeecCCCCCccC----CCCCCCCCCEEeccCC
Q 039619 271 VSFPPEKDTGKALPASLKHLSIWNFPNLERIS----SIENLTSFESLQLCCC 318 (459)
Q Consensus 271 ~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~----~l~~l~~L~~L~l~~c 318 (459)
..+|..+ ..+..|++|.|.+ |-+++=| ..+...-.++|++.-|
T Consensus 224 s~iPv~f----r~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 224 SYLPVDF----RKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eecchhh----hhhhhheeeeecc-CCCCCChHHHHhccceeeeeeecchhc
Confidence 6666555 3555666666654 5555544 2233334455555555
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.40 E-value=2.1e-07 Score=93.51 Aligned_cols=172 Identities=21% Similarity=0.268 Sum_probs=115.2
Q ss_pred ccCcEEEeecCCCceeecccccccc-ccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEe
Q 039619 132 ATLENIYVDRCSKLAFLSLRGNLSK-ALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLL 210 (459)
Q Consensus 132 ~~L~~L~l~~c~~l~~l~~~~~lp~-~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~ 210 (459)
+.++.|++.+ ..+.+++....+.. +|+.|++++ ..+..+|..+..+++|+.|+++++ .+..+|...+.++.|+.|+
T Consensus 116 ~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCC-cccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhhee
Confidence 4667777765 56666664433313 677777776 466777666777788888888776 5666666555777788888
Q ss_pred eccCCCCccccCC-CCCCCccEEEEecC-cccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcc
Q 039619 211 IQDCPTIGSFTAN-CFPTNLASVCIDYE-KIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLK 288 (459)
Q Consensus 211 l~~c~~l~~lp~~-~~~~~L~~L~l~~~-~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~ 288 (459)
+++ +.+..+|.. ..+..|++|.++++ .+..+. .+.++.++..+.+.+ +.+..++... ..+++++
T Consensus 193 ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~------~~~~~~~l~~l~l~~---n~~~~~~~~~----~~l~~l~ 258 (394)
T COG4886 193 LSG-NKISDLPPEIELLSALEELDLSNNSIIELLS------SLSNLKNLSGLELSN---NKLEDLPESI----GNLSNLE 258 (394)
T ss_pred ccC-CccccCchhhhhhhhhhhhhhcCCcceecch------hhhhcccccccccCC---ceeeeccchh----ccccccc
Confidence 876 456677765 45666888888776 344333 456777777777655 4555544443 2566788
Q ss_pred eEEeecCCCCCccCCCCCCCCCCEEeccCCCCC
Q 039619 289 HLSIWNFPNLERISSIENLTSFESLQLCCCPKL 321 (459)
Q Consensus 289 ~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l 321 (459)
.|++++ +.+.+++.+..+.+++.|++++....
T Consensus 259 ~L~~s~-n~i~~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 259 TLDLSN-NQISSISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred eecccc-ccccccccccccCccCEEeccCcccc
Confidence 888887 77777777777788888888874433
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.31 E-value=1.1e-07 Score=87.55 Aligned_cols=126 Identities=18% Similarity=0.238 Sum_probs=95.7
Q ss_pred CCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCC
Q 039619 201 RNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDT 279 (459)
Q Consensus 201 ~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~ 279 (459)
...+.|++|++++ +.++.+.+. .+.+.++.|+++.|.+.... .++.+++|+.|++++ +.+..+....
T Consensus 281 dTWq~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~i~~v~------nLa~L~~L~~LDLS~---N~Ls~~~Gwh-- 348 (490)
T KOG1259|consen 281 DTWQELTELDLSG-NLITQIDESVKLAPKLRRLILSQNRIRTVQ------NLAELPQLQLLDLSG---NLLAECVGWH-- 348 (490)
T ss_pred chHhhhhhccccc-cchhhhhhhhhhccceeEEeccccceeeeh------hhhhcccceEeeccc---chhHhhhhhH--
Confidence 3456788999987 456777655 56889999999998887554 678889999999998 5666555433
Q ss_pred CccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCCCCcCC---CCCCCCCcceEEeeCCc
Q 039619 280 GKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFP---DNGLPTSLLRLEIYGCP 342 (459)
Q Consensus 280 ~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~lp---~~~l~~sL~~L~i~~c~ 342 (459)
..+-+++.|.+++ |.++++.+++.+-+|..|++++ ++++.+. ..|-+|.|+++.+.+.|
T Consensus 349 --~KLGNIKtL~La~-N~iE~LSGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 349 --LKLGNIKTLKLAQ-NKIETLSGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred --hhhcCEeeeehhh-hhHhhhhhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC
Confidence 2567889999998 8888888888889999999988 4555544 33447888888888876
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=2.1e-07 Score=89.72 Aligned_cols=199 Identities=13% Similarity=0.117 Sum_probs=116.0
Q ss_pred eeEEEEecCCCCccccC--CccccccCcEEEeecCCCceeec----cccccccccceEEeecccCCccccc--cCCCCCc
Q 039619 110 VYQLQIIPCPSLTSLWS--KSELPATLENIYVDRCSKLAFLS----LRGNLSKALKHLYIISCSNLESIAE--GLDDNTS 181 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~--~~~~~~~L~~L~l~~c~~l~~l~----~~~~lp~~L~~L~l~~c~~l~~lp~--~l~~l~~ 181 (459)
|++..+.+| .....+. ....+++++.|++++. -+..+. +...| |+|+.|+++.+ .+....+ .-..+++
T Consensus 123 L~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqL-p~Le~LNls~N-rl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 123 LREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQL-PSLENLNLSSN-RLSNFISSNTTLLLSH 198 (505)
T ss_pred hhheeecCc-cccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhc-ccchhcccccc-cccCCccccchhhhhh
Confidence 556666553 2322221 2344568888888772 232221 33567 88888888874 3332211 1124688
Q ss_pred ccEEeeccccCcc--cCcccCCCCCCccEEeeccCCCCcccc-CCCCCCCccEEEEecCcccccccccCCCCCCCCCccC
Q 039619 182 LETMEIFICQNLK--ALPNGLRNLTSLQYLLIQDCPTIGSFT-ANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVR 258 (459)
Q Consensus 182 L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~ 258 (459)
|+.|.+++| .+. .+-..+..+++|+.|.+..+..+.... ....+..|++|+|++|++.+.. +....+.++.|+
T Consensus 199 lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~---~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 199 LKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD---QGYKVGTLPGLN 274 (505)
T ss_pred hheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc---cccccccccchh
Confidence 889999888 333 121223467889999998764332221 2255788999999995554321 012567889999
Q ss_pred EEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC---CCCCCCCCCEEeccC
Q 039619 259 LLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS---SIENLTSFESLQLCC 317 (459)
Q Consensus 259 ~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---~l~~l~~L~~L~l~~ 317 (459)
.|+++.++-..+...+.+.......+++|++|++.. |++.+++ .+..+++|+.|.+..
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhccc
Confidence 999988211122222221111112567999999998 7887777 555667777777643
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.20 E-value=1e-06 Score=88.60 Aligned_cols=174 Identities=17% Similarity=0.205 Sum_probs=131.9
Q ss_pred eeEEEEecCCCCccccCCccccc-cCcEEEeecCCCceeec-cccccccccceEEeecccCCccccccCCCCCcccEEee
Q 039619 110 VYQLQIIPCPSLTSLWSKSELPA-TLENIYVDRCSKLAFLS-LRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEI 187 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~~~~~~-~L~~L~l~~c~~l~~l~-~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 187 (459)
++.|++.+ ..+++++....... +|+.|++++ +.+..+| ..+.+ ++|+.|+++++ .+.++|...+.+++|+.|++
T Consensus 118 l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l-~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 118 LTSLDLDN-NNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNL-PNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred eeEEecCC-cccccCccccccchhhcccccccc-cchhhhhhhhhcc-ccccccccCCc-hhhhhhhhhhhhhhhhheec
Confidence 78888865 78888887777774 999999988 6788875 33566 99999999985 78888877667899999999
Q ss_pred ccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcC
Q 039619 188 FICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGEC 267 (459)
Q Consensus 188 ~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c 267 (459)
+++ .+..+|..+..+..|++|.+.+...+..........++..+.+.++++.... . .++.+++++.|++++
T Consensus 194 s~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~--~---~~~~l~~l~~L~~s~--- 264 (394)
T COG4886 194 SGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLP--E---SIGNLSNLETLDLSN--- 264 (394)
T ss_pred cCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeecc--c---hhccccccceecccc---
Confidence 997 7888887666677799999987644433333355677777877777765411 1 568889999999998
Q ss_pred CCceecCCCCCCCccCCCCcceEEeecCCCCCccC
Q 039619 268 CGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS 302 (459)
Q Consensus 268 ~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 302 (459)
+.+..++... ...+++.|++++ +.+..++
T Consensus 265 n~i~~i~~~~-----~~~~l~~L~~s~-n~~~~~~ 293 (394)
T COG4886 265 NQISSISSLG-----SLTNLRELDLSG-NSLSNAL 293 (394)
T ss_pred cccccccccc-----ccCccCEEeccC-ccccccc
Confidence 5777777632 678999999998 5554443
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.14 E-value=1e-06 Score=77.07 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=10.3
Q ss_pred CCcceEEeecCCCCCccC---CCCCCCCCCEEeccCCC
Q 039619 285 ASLKHLSIWNFPNLERIS---SIENLTSFESLQLCCCP 319 (459)
Q Consensus 285 ~~L~~L~l~~c~~l~~l~---~l~~l~~L~~L~l~~c~ 319 (459)
++|++|.+++ |++.++. .+..+++|+.|++.++|
T Consensus 88 p~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 88 PNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred CcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCc
Confidence 3444444444 4444333 33344555555555543
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.11 E-value=1.9e-06 Score=75.46 Aligned_cols=129 Identities=19% Similarity=0.234 Sum_probs=47.3
Q ss_pred CCCccEEEEecCcccccccccCCCCCC-CCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-C
Q 039619 226 PTNLASVCIDYEKIYKPLILERGPGLH-RFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-S 303 (459)
Q Consensus 226 ~~~L~~L~l~~~~l~~~~~~~~~~~l~-~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~ 303 (459)
+..+++|++.++.++..- .++ .+.+|+.|++++ +.+..+..-. .++.|+.|++++ |.++++. .
T Consensus 18 ~~~~~~L~L~~n~I~~Ie------~L~~~l~~L~~L~Ls~---N~I~~l~~l~-----~L~~L~~L~L~~-N~I~~i~~~ 82 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE------NLGATLDKLEVLDLSN---NQITKLEGLP-----GLPRLKTLDLSN-NRISSISEG 82 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TT---S--S--TT---------TT--EEE--S-S---S-CHH
T ss_pred cccccccccccccccccc------chhhhhcCCCEEECCC---CCCccccCcc-----ChhhhhhcccCC-CCCCccccc
Confidence 445666666665554322 444 467888888887 4666665432 567889999988 8888886 4
Q ss_pred C-CCCCCCCEEeccCCCCCCcCCCC-C--CCCCcceEEeeCCchhHHhhhcCcCCccccccCCCeEEeCceeeeCH
Q 039619 304 I-ENLTSFESLQLCCCPKLQKFPDN-G--LPTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCHYVIDP 375 (459)
Q Consensus 304 l-~~l~~L~~L~l~~c~~l~~lp~~-~--l~~sL~~L~i~~c~~L~~~~~~~~~~~~~~i~~i~~l~~~~~~~l~~ 375 (459)
+ ..+++|++|++++ +++.++.+. . -+++|+.|++.++|--... .-...-+.++|.+++-+...+..
T Consensus 83 l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~-----~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 83 LDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEKK-----NYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp HHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGST-----THHHHHHHH-TT-SEETTEETTS
T ss_pred hHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccchh-----hHHHHHHHHcChhheeCCEEccH
Confidence 4 3689999999988 677777652 1 2789999999999843211 00112355777776655444444
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.07 E-value=2.8e-07 Score=91.68 Aligned_cols=184 Identities=16% Similarity=0.129 Sum_probs=138.2
Q ss_pred ceEEeCCCCCCCCCccc--------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEee
Q 039619 93 DPEVLDCPVCYEPLTIP--------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYII 164 (459)
Q Consensus 93 ~L~l~~c~~l~~l~~lp--------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~ 164 (459)
..+++. +.+..+| |+.+.+.. +.+..+|..+..+..|..|+++. +++..+|..-.. --|+.|.++
T Consensus 79 ~aDlsr----NR~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~-lpLkvli~s 151 (722)
T KOG0532|consen 79 FADLSR----NRFSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCD-LPLKVLIVS 151 (722)
T ss_pred hhhccc----cccccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhcc-chhhcCChhhhc-CcceeEEEe
Confidence 345555 5677777 77777755 56778887788888999999987 678888855333 458999998
Q ss_pred cccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCccccccc
Q 039619 165 SCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLI 244 (459)
Q Consensus 165 ~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~ 244 (459)
+ ++++.+|+.++.+.+|..|+.+.| .+..+|..++.+.+|+.|.+.. +.+..+|..-..=.|.+||++.|++...
T Consensus 152 N-Nkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~LpLi~lDfScNkis~i-- 226 (722)
T KOG0532|consen 152 N-NKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLPLIRLDFSCNKISYL-- 226 (722)
T ss_pred c-CccccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCceeeeecccCceeec--
Confidence 8 689999999999999999999987 7788999999999999999987 4567777653344688999999888643
Q ss_pred ccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecC
Q 039619 245 LERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNF 295 (459)
Q Consensus 245 ~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c 295 (459)
|. .+.+|+.|++|.|.+ +-+.+-|..+-.. ....--++|++.-|
T Consensus 227 Pv---~fr~m~~Lq~l~Len---NPLqSPPAqIC~k-GkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 227 PV---DFRKMRHLQVLQLEN---NPLQSPPAQICEK-GKVHIFKYLSTQAC 270 (722)
T ss_pred ch---hhhhhhhheeeeecc---CCCCCChHHHHhc-cceeeeeeecchhc
Confidence 23 789999999999987 6777766543000 01223467777776
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=8e-07 Score=85.82 Aligned_cols=196 Identities=13% Similarity=0.128 Sum_probs=118.9
Q ss_pred ccccCcEEEeecCCCceeec---cccccccccceEEeecccCCccc---cccCCCCCcccEEeeccccCcccCcccC--C
Q 039619 130 LPATLENIYVDRCSKLAFLS---LRGNLSKALKHLYIISCSNLESI---AEGLDDNTSLETMEIFICQNLKALPNGL--R 201 (459)
Q Consensus 130 ~~~~L~~L~l~~c~~l~~l~---~~~~lp~~L~~L~l~~c~~l~~l---p~~l~~l~~L~~L~l~~c~~l~~lp~~l--~ 201 (459)
...+|++..+.+| .+...+ ....+ ++++.|+++.. -+..+ -.-+..+++|+.|+++.+ .+....++. .
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~-~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~ 194 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEEYSKIL-PNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTL 194 (505)
T ss_pred hHHhhhheeecCc-cccccchhhhhhhC-Ccceeecchhh-hHHhHHHHHHHHHhcccchhcccccc-cccCCccccchh
Confidence 4467888888775 344444 23567 88999999873 33322 334566899999999876 333221211 3
Q ss_pred CCCCccEEeeccCCCCcccc--CC-CCCCCccEEEEecCc-ccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCC
Q 039619 202 NLTSLQYLLIQDCPTIGSFT--AN-CFPTNLASVCIDYEK-IYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEK 277 (459)
Q Consensus 202 ~l~~L~~L~l~~c~~l~~lp--~~-~~~~~L~~L~l~~~~-l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~ 277 (459)
.+++|+.|.++.|. +..-. .. ..+++|+.|++..|. +.... .....+..|++|+|++ +++..++..-
T Consensus 195 ~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~-----~~~~i~~~L~~LdLs~---N~li~~~~~~ 265 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKA-----TSTKILQTLQELDLSN---NNLIDFDQGY 265 (505)
T ss_pred hhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceec-----chhhhhhHHhhccccC---Cccccccccc
Confidence 57789999998885 22111 11 236789999988853 22111 1234577899999998 4554444210
Q ss_pred CCCccCCCCcceEEeecCCCCCccC--C------CCCCCCCCEEeccCCCCCCcCCC---CCCCCCcceEEeeCCc
Q 039619 278 DTGKALPASLKHLSIWNFPNLERIS--S------IENLTSFESLQLCCCPKLQKFPD---NGLPTSLLRLEIYGCP 342 (459)
Q Consensus 278 ~~~~~~~~~L~~L~l~~c~~l~~l~--~------l~~l~~L~~L~l~~c~~l~~lp~---~~l~~sL~~L~i~~c~ 342 (459)
....++.|+.|.++. ..+.++. . ...+++|++|++..+ ++...+. ....++|+.|.+...+
T Consensus 266 --~~~~l~~L~~Lnls~-tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 266 --KVGTLPGLNQLNLSS-TGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred --ccccccchhhhhccc-cCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhccccc
Confidence 001677888888887 5666654 2 245789999999884 4544443 2235677777665443
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=2.2e-07 Score=85.42 Aligned_cols=59 Identities=20% Similarity=0.336 Sum_probs=38.2
Q ss_pred CCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCc--CCCCCCCCCcceEEeeCC
Q 039619 283 LPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQK--FPDNGLPTSLLRLEIYGC 341 (459)
Q Consensus 283 ~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~--lp~~~l~~sL~~L~i~~c 341 (459)
..++|..|++++|..++.-- .+..++.|++|.++.|-.+-. +-+-.-.|+|.+|++.||
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 34677777777777666522 566778888888888854421 101111578889998888
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=2.4e-07 Score=85.16 Aligned_cols=176 Identities=15% Similarity=0.164 Sum_probs=103.9
Q ss_pred ccCcEEEeecCCCceeec---cccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcc--cCCCCCCc
Q 039619 132 ATLENIYVDRCSKLAFLS---LRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPN--GLRNLTSL 206 (459)
Q Consensus 132 ~~L~~L~l~~c~~l~~l~---~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~--~l~~l~~L 206 (459)
+.|++||+++. .++.-. +-..+ .+|+.|.+.+..--..+-..+..-.+|+.|+++.|+.++.... -+.+++.|
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C-~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQC-SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHH-HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 45777777662 333211 11233 5677777776433333334455567888888888877764321 23577888
Q ss_pred cEEeeccCCCCccccC---CCCCCCccEEEEec--CcccccccccCCCCCCCCCccCEEEEeCCcCCCcee-cCCCCCCC
Q 039619 207 QYLLIQDCPTIGSFTA---NCFPTNLASVCIDY--EKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVS-FPPEKDTG 280 (459)
Q Consensus 207 ~~L~l~~c~~l~~lp~---~~~~~~L~~L~l~~--~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~-l~~~~~~~ 280 (459)
.+|++++|...+..-. ...-++|+.|+++| .++...- .+ .-...+++|.+|++++ |..+.. .-..+
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh-~~--tL~~rcp~l~~LDLSD--~v~l~~~~~~~~--- 334 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSH-LS--TLVRRCPNLVHLDLSD--SVMLKNDCFQEF--- 334 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhH-HH--HHHHhCCceeeecccc--ccccCchHHHHH---
Confidence 8888888865433211 13356888888888 3332211 00 0124678888888888 555432 00011
Q ss_pred ccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCC
Q 039619 281 KALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCC 318 (459)
Q Consensus 281 ~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c 318 (459)
..++.|++|.++.|..+..-. .+...++|.+|++.+|
T Consensus 335 -~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 335 -FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred -HhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 145678888888887653222 5677788888888886
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.72 E-value=5.4e-05 Score=54.08 Aligned_cols=57 Identities=26% Similarity=0.455 Sum_probs=33.4
Q ss_pred cccceEEeecccCCcccc-ccCCCCCcccEEeeccccCcccCcc-cCCCCCCccEEeeccC
Q 039619 156 KALKHLYIISCSNLESIA-EGLDDNTSLETMEIFICQNLKALPN-GLRNLTSLQYLLIQDC 214 (459)
Q Consensus 156 ~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c 214 (459)
|+|++|++++| .+..+| ..+..+++|++|+++++ .++.++. .+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 35666666664 555554 34556666666666654 4444443 4566666666666654
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.69 E-value=4.1e-05 Score=54.71 Aligned_cols=57 Identities=25% Similarity=0.347 Sum_probs=32.6
Q ss_pred CccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCC
Q 039619 255 TSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCC 318 (459)
Q Consensus 255 ~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c 318 (459)
++|++|++++ +.+..+|.+. ...+++|++|++++ +.++.++ .+..+++|++|++++|
T Consensus 1 p~L~~L~l~~---n~l~~i~~~~---f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSN---NKLTEIPPDS---FSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETS---STESEECTTT---TTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCC---CCCCccCHHH---HcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 3566666666 3566665432 12355666666665 5566655 5566666666666654
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.67 E-value=9.1e-07 Score=90.37 Aligned_cols=122 Identities=23% Similarity=0.220 Sum_probs=89.9
Q ss_pred ccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCC
Q 039619 206 LQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALP 284 (459)
Q Consensus 206 L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~ 284 (459)
|...+.+ |+.+..+... .+++.|+.|+++.|+++... .+..++.|++|+|+. +.+..+|.-.. .-
T Consensus 166 L~~a~fs-yN~L~~mD~SLqll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsy---N~L~~vp~l~~----~g 231 (1096)
T KOG1859|consen 166 LATASFS-YNRLVLMDESLQLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSY---NCLRHVPQLSM----VG 231 (1096)
T ss_pred Hhhhhcc-hhhHHhHHHHHHHHHHhhhhccchhhhhhhH------HHHhccccccccccc---chhccccccch----hh
Confidence 4444442 4556555443 56889999999999988655 678899999999998 56777765321 22
Q ss_pred CCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCCCCcCCC---CCCCCCcceEEeeCCch
Q 039619 285 ASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPD---NGLPTSLLRLEIYGCPL 343 (459)
Q Consensus 285 ~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~lp~---~~l~~sL~~L~i~~c~~ 343 (459)
..|+.|.+++ |.++++-++.++.+|+.||++++ -+....+ -+.+.+|+.|++.|+|-
T Consensus 232 c~L~~L~lrn-N~l~tL~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 232 CKLQLLNLRN-NALTTLRGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhheeeeecc-cHHHhhhhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 3599999999 89999888999999999999983 4444333 12267899999999873
No 44
>PLN03150 hypothetical protein; Provisional
Probab=97.58 E-value=0.00011 Score=78.12 Aligned_cols=112 Identities=18% Similarity=0.175 Sum_probs=83.2
Q ss_pred cccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCccCE
Q 039619 181 SLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRL 259 (459)
Q Consensus 181 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~ 259 (459)
.++.|+++++.--..+|..+..+++|+.|+++++.....+|.. +.+++|+.|++++|++.... |+ .++++++|+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~---~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PE---SLGQLTSLRI 494 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-ch---HHhcCCCCCE
Confidence 4778888887555578888889999999999887654567654 66889999999998888766 66 7889999999
Q ss_pred EEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCcc
Q 039619 260 LTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERI 301 (459)
Q Consensus 260 L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l 301 (459)
|++++ +.....+|...+ ..+.++..+++.++..+...
T Consensus 495 L~Ls~--N~l~g~iP~~l~---~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 495 LNLNG--NSLSGRVPAALG---GRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred EECcC--CcccccCChHHh---hccccCceEEecCCccccCC
Confidence 99998 455557776542 12345677888875544443
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.58 E-value=1e-05 Score=81.73 Aligned_cols=166 Identities=20% Similarity=0.219 Sum_probs=84.7
Q ss_pred ccccCcEEEeecCCCceeecc-ccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccE
Q 039619 130 LPATLENIYVDRCSKLAFLSL-RGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQY 208 (459)
Q Consensus 130 ~~~~L~~L~l~~c~~l~~l~~-~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~ 208 (459)
...+|+.|++.+ +.++.+.. ...+ ++|++|++++ +.++.+ .++..++.|+.|++.++ .+..+ ..+..+++|+.
T Consensus 93 ~~~~l~~l~l~~-n~i~~i~~~l~~~-~~L~~L~ls~-N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~-~~~~~l~~L~~ 166 (414)
T KOG0531|consen 93 KLKSLEALDLYD-NKIEKIENLLSSL-VNLQVLDLSF-NKITKL-EGLSTLTLLKELNLSGN-LISDI-SGLESLKSLKL 166 (414)
T ss_pred cccceeeeeccc-cchhhcccchhhh-hcchheeccc-cccccc-cchhhccchhhheeccC-cchhc-cCCccchhhhc
Confidence 334666666655 45555543 4445 6666666666 345555 23455566666666665 44444 23444666666
Q ss_pred EeeccCCCCccccC--CCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCC
Q 039619 209 LLIQDCPTIGSFTA--NCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPAS 286 (459)
Q Consensus 209 L~l~~c~~l~~lp~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~ 286 (459)
++++++ .+..+.. .....+++.+.+.++.+.... .+..+..+..+++.. +.+..+-... ....
T Consensus 167 l~l~~n-~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~------~~~~~~~l~~~~l~~---n~i~~~~~l~-----~~~~ 231 (414)
T KOG0531|consen 167 LDLSYN-RIVDIENDELSELISLEELDLGGNSIREIE------GLDLLKKLVLLSLLD---NKISKLEGLN-----ELVM 231 (414)
T ss_pred ccCCcc-hhhhhhhhhhhhccchHHHhccCCchhccc------chHHHHHHHHhhccc---ccceeccCcc-----cchh
Confidence 666653 3334433 234556666666665544222 223333333334443 2332222111 1122
Q ss_pred --cceEEeecCCCCCccC-CCCCCCCCCEEeccC
Q 039619 287 --LKHLSIWNFPNLERIS-SIENLTSFESLQLCC 317 (459)
Q Consensus 287 --L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~ 317 (459)
|+.+++.+ +.+..++ .+..+..+..|++.+
T Consensus 232 ~~L~~l~l~~-n~i~~~~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 232 LHLRELYLSG-NRISRSPEGLENLKNLPVLDLSS 264 (414)
T ss_pred HHHHHHhccc-Cccccccccccccccccccchhh
Confidence 66666666 5666653 555666666666655
No 46
>PLN03150 hypothetical protein; Provisional
Probab=97.48 E-value=0.00018 Score=76.39 Aligned_cols=104 Identities=21% Similarity=0.208 Sum_probs=78.0
Q ss_pred cCcEEEeecCCCceeecc-ccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEee
Q 039619 133 TLENIYVDRCSKLAFLSL-RGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLI 211 (459)
Q Consensus 133 ~L~~L~l~~c~~l~~l~~-~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 211 (459)
.++.|+|+++.--..+|. ...+ ++|+.|+++++.....+|..+..+++|+.|+++++.-...+|..++++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKL-RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCC-CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 377888887543334552 2567 89999999997555578888999999999999998665678888999999999999
Q ss_pred ccCCCCccccCC--CCCCCccEEEEecC
Q 039619 212 QDCPTIGSFTAN--CFPTNLASVCIDYE 237 (459)
Q Consensus 212 ~~c~~l~~lp~~--~~~~~L~~L~l~~~ 237 (459)
+++.....+|.. ....++..+++.+|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCC
Confidence 987655566653 22346667777764
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.16 E-value=5e-05 Score=76.80 Aligned_cols=186 Identities=20% Similarity=0.274 Sum_probs=109.6
Q ss_pred cCcEEEeecCCCcee-eccccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEee
Q 039619 133 TLENIYVDRCSKLAF-LSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLI 211 (459)
Q Consensus 133 ~L~~L~l~~c~~l~~-l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 211 (459)
.++.+++.. +.+.. ......+ .+|+.|++.+ +.++.+...+..+++|++|+++++ .++.+ .++..++.|+.|++
T Consensus 73 ~l~~l~l~~-n~i~~~~~~l~~~-~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 73 SLKELNLRQ-NLIAKILNHLSKL-KSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELNL 147 (414)
T ss_pred hHHhhccch-hhhhhhhcccccc-cceeeeeccc-cchhhcccchhhhhcchheecccc-ccccc-cchhhccchhhhee
Confidence 445555443 23333 1112455 7888888877 466666544677888888888875 56665 35667777888888
Q ss_pred ccCCCCccccCCCCCCCccEEEEecCcccccccccCCCC--CCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcce
Q 039619 212 QDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPG--LHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKH 289 (459)
Q Consensus 212 ~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~ 289 (459)
.++ .+..+.....+.+|+.++++++.+.... . +..+.+|+.+.+.+ +.+..+.... ....+..
T Consensus 148 ~~N-~i~~~~~~~~l~~L~~l~l~~n~i~~ie------~~~~~~~~~l~~l~l~~---n~i~~i~~~~-----~~~~l~~ 212 (414)
T KOG0531|consen 148 SGN-LISDISGLESLKSLKLLDLSYNRIVDIE------NDELSELISLEELDLGG---NSIREIEGLD-----LLKKLVL 212 (414)
T ss_pred ccC-cchhccCCccchhhhcccCCcchhhhhh------hhhhhhccchHHHhccC---CchhcccchH-----HHHHHHH
Confidence 774 4666665555778888888886665433 3 36677788888877 3443333221 2334444
Q ss_pred EEeecCCCCCccCCCCCCCC--CCEEeccCCCCCCcCC-CCCCCCCcceEEeeC
Q 039619 290 LSIWNFPNLERISSIENLTS--FESLQLCCCPKLQKFP-DNGLPTSLLRLEIYG 340 (459)
Q Consensus 290 L~l~~c~~l~~l~~l~~l~~--L~~L~l~~c~~l~~lp-~~~l~~sL~~L~i~~ 340 (459)
+++.+ +.+..+.++..+.. |+.+++.+ +.+..++ .......+..|++.+
T Consensus 213 ~~l~~-n~i~~~~~l~~~~~~~L~~l~l~~-n~i~~~~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 213 LSLLD-NKISKLEGLNELVMLHLRELYLSG-NRISRSPEGLENLKNLPVLDLSS 264 (414)
T ss_pred hhccc-ccceeccCcccchhHHHHHHhccc-Cccccccccccccccccccchhh
Confidence 45555 55555444444444 78888887 3455442 111234555555543
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.01 E-value=6.5e-06 Score=84.31 Aligned_cols=38 Identities=8% Similarity=-0.063 Sum_probs=19.3
Q ss_pred CCCCeEeccCCCccCcccccCCccCCccceeecccccc
Q 039619 25 PKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETR 62 (459)
Q Consensus 25 ~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 62 (459)
++++.|++...+.-..-....+-.|..|++|.+++|+.
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L 121 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDL 121 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccceeeEEecCcch
Confidence 44555555444443322222333466677777776664
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.98 E-value=0.0018 Score=56.89 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=72.0
Q ss_pred CCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC---
Q 039619 226 PTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--- 302 (459)
Q Consensus 226 ~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--- 302 (459)
..+...+++++|++.... .+.+++.|..|.+.+ +.+..+....+ .++++|+.|.+.+ |++..+.
T Consensus 41 ~d~~d~iDLtdNdl~~l~------~lp~l~rL~tLll~n---NrIt~I~p~L~---~~~p~l~~L~Ltn-Nsi~~l~dl~ 107 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD------NLPHLPRLHTLLLNN---NRITRIDPDLD---TFLPNLKTLILTN-NSIQELGDLD 107 (233)
T ss_pred ccccceecccccchhhcc------cCCCccccceEEecC---Ccceeeccchh---hhccccceEEecC-cchhhhhhcc
Confidence 456666777776665433 567788888998887 67777766553 3567899999988 7777766
Q ss_pred CCCCCCCCCEEeccCCCCCCcCCCC-----CCCCCcceEEeeCCc
Q 039619 303 SIENLTSFESLQLCCCPKLQKFPDN-----GLPTSLLRLEIYGCP 342 (459)
Q Consensus 303 ~l~~l~~L~~L~l~~c~~l~~lp~~-----~l~~sL~~L~i~~c~ 342 (459)
.+..+++|++|.+-+++ ++.-..- ...|+|+.|++.+-.
T Consensus 108 pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 108 PLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 67788899999888754 3322220 126888888887764
No 50
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.92 E-value=5.5e-05 Score=77.82 Aligned_cols=107 Identities=22% Similarity=0.317 Sum_probs=62.4
Q ss_pred eeEEEEecCCCCcc--ccCCccccccCcEEEeecC-CCceeec-----cccccccccceEEeecccCCccc--cccCCCC
Q 039619 110 VYQLQIIPCPSLTS--LWSKSELPATLENIYVDRC-SKLAFLS-----LRGNLSKALKHLYIISCSNLESI--AEGLDDN 179 (459)
Q Consensus 110 L~~L~l~~c~~l~~--lp~~~~~~~~L~~L~l~~c-~~l~~l~-----~~~~lp~~L~~L~l~~c~~l~~l--p~~l~~l 179 (459)
|+.|.+.+|..+.. +-......++|+.|++++| ......+ ....+ ++|+.|+++.|..+.+. ..-...+
T Consensus 190 L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~isd~~l~~l~~~c 268 (482)
T KOG1947|consen 190 LKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSIC-RKLKSLDLSGCGLVTDIGLSALASRC 268 (482)
T ss_pred hhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhc-CCcCccchhhhhccCchhHHHHHhhC
Confidence 77777777776665 3224445567888887763 3322222 22344 67778888777654433 1112236
Q ss_pred CcccEEeeccccCccc--CcccCCCCCCccEEeeccCCCC
Q 039619 180 TSLETMEIFICQNLKA--LPNGLRNLTSLQYLLIQDCPTI 217 (459)
Q Consensus 180 ~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~c~~l 217 (459)
++|++|.+.+|..++. +-.....+++|++|++++|..+
T Consensus 269 ~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 269 PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 7888888777765432 1122245677888888877765
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.90 E-value=0.00028 Score=75.12 Aligned_cols=79 Identities=18% Similarity=0.223 Sum_probs=39.5
Q ss_pred ccCcEEEeecCCCceeec---cccccccccceEEeecccCC-ccccccCCCCCcccEEeeccccCcccCcccCCCCCCcc
Q 039619 132 ATLENIYVDRCSKLAFLS---LRGNLSKALKHLYIISCSNL-ESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQ 207 (459)
Q Consensus 132 ~~L~~L~l~~c~~l~~l~---~~~~lp~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~ 207 (459)
.+|++|++++-..+..-. .+..| |+|+.|.+.+-.-. .++..-..++++|..||++++ +++.+ .+++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~L-PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTML-PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhC-cccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHH
Confidence 356666665532221111 12334 66666666552111 112223445666666666665 45555 4566666666
Q ss_pred EEeecc
Q 039619 208 YLLIQD 213 (459)
Q Consensus 208 ~L~l~~ 213 (459)
.|.+.+
T Consensus 199 ~L~mrn 204 (699)
T KOG3665|consen 199 VLSMRN 204 (699)
T ss_pred HHhccC
Confidence 666654
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.86 E-value=0.0011 Score=43.66 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=15.8
Q ss_pred ccceEEeecccCCccccccCCCCCcccEEeeccc
Q 039619 157 ALKHLYIISCSNLESIAEGLDDNTSLETMEIFIC 190 (459)
Q Consensus 157 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 190 (459)
+|++|+++++ .++++|..+.++++|+.|+++++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence 4455555552 44455444555555555555554
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.73 E-value=0.0017 Score=42.78 Aligned_cols=40 Identities=25% Similarity=0.425 Sum_probs=30.4
Q ss_pred CcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCcccc
Q 039619 180 TSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFT 221 (459)
Q Consensus 180 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp 221 (459)
++|++|+++++ .++.+|..+.++++|+.|+++++ .+++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 47899999887 77788877889999999999886 466554
No 54
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.70 E-value=5.4e-05 Score=77.88 Aligned_cols=230 Identities=18% Similarity=0.212 Sum_probs=123.8
Q ss_pred eeEEEEecCCCCcccc---CCccccccCcEEEeecCCCceee---ccccccccccceEEeecc-cCCcccc----ccCCC
Q 039619 110 VYQLQIIPCPSLTSLW---SKSELPATLENIYVDRCSKLAFL---SLRGNLSKALKHLYIISC-SNLESIA----EGLDD 178 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp---~~~~~~~~L~~L~l~~c~~l~~l---~~~~~lp~~L~~L~l~~c-~~l~~lp----~~l~~ 178 (459)
++.+.+..+....... ......++|+.|.+.+|..+... +..... ++|+.|++++| ......+ .....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 241 (482)
T KOG1947|consen 163 LESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKC-PNLEELDLSGCCLLITLSPLLLLLLLSI 241 (482)
T ss_pred HheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhC-chhheecccCcccccccchhHhhhhhhh
Confidence 6666665544332111 01123469999999999888863 344556 89999999883 3332222 23445
Q ss_pred CCcccEEeeccccCcccCc-ccC-CCCCCccEEeeccCCCCccccCC---CCCCCccEEEEec-CcccccccccCCCCCC
Q 039619 179 NTSLETMEIFICQNLKALP-NGL-RNLTSLQYLLIQDCPTIGSFTAN---CFPTNLASVCIDY-EKIYKPLILERGPGLH 252 (459)
Q Consensus 179 l~~L~~L~l~~c~~l~~lp-~~l-~~l~~L~~L~l~~c~~l~~lp~~---~~~~~L~~L~l~~-~~l~~~~~~~~~~~l~ 252 (459)
+.+|+.|+++.|..+...- ..+ ..+++|+.|.+.+|..++..... ...++|++|++++ ..+++..... ...
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~---~~~ 318 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEA---LLK 318 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHH---HHH
Confidence 7899999999987554321 112 23789999999889875443221 3367899999998 4443221011 224
Q ss_pred CCCccCEEEEeCC-cCCCceecCCCCCCCccCC-CCcceEEeecCCCCCccC--CCCCCCCCC-EEeccCCCCCC-cCCC
Q 039619 253 RFTSVRLLTLFGG-ECCGVVSFPPEKDTGKALP-ASLKHLSIWNFPNLERIS--SIENLTSFE-SLQLCCCPKLQ-KFPD 326 (459)
Q Consensus 253 ~l~~L~~L~l~~~-~c~~l~~l~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~--~l~~l~~L~-~L~l~~c~~l~-~lp~ 326 (459)
++++|+.|.+... .|..++.+.-..- .... ..+..+.+.+|.+++.+. ..+ ..... .+.+.+|+.++ .+..
T Consensus 319 ~c~~l~~l~~~~~~~c~~l~~~~l~~~--~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~ 395 (482)
T KOG1947|consen 319 NCPNLRELKLLSLNGCPSLTDLSLSGL--LTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLEL 395 (482)
T ss_pred hCcchhhhhhhhcCCCccHHHHHHHHh--hccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHH
Confidence 4666666555441 0223332211100 0011 245566666666666554 222 23333 46666676662 2221
Q ss_pred C-CCCCCcceEEeeCCchhHH
Q 039619 327 N-GLPTSLLRLEIYGCPLIEE 346 (459)
Q Consensus 327 ~-~l~~sL~~L~i~~c~~L~~ 346 (459)
. ....+++.|.+..|...+.
T Consensus 396 ~~~~~~~l~~L~l~~~~~~t~ 416 (482)
T KOG1947|consen 396 RLCRSDSLRVLNLSDCRLVTD 416 (482)
T ss_pred HhccCCccceEecccCccccc
Confidence 1 1122367777777765443
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.70 E-value=0.00066 Score=72.35 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=8.3
Q ss_pred CCCCCCCCCEEeccC
Q 039619 303 SIENLTSFESLQLCC 317 (459)
Q Consensus 303 ~l~~l~~L~~L~l~~ 317 (459)
.+.+|++|+.||++.
T Consensus 215 ~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 215 DLFNLKKLRVLDISR 229 (699)
T ss_pred HHhcccCCCeeeccc
Confidence 344555566666654
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.41 E-value=0.0025 Score=60.49 Aligned_cols=13 Identities=15% Similarity=0.232 Sum_probs=6.2
Q ss_pred CCCCccCEEEEeC
Q 039619 252 HRFTSVRLLTLFG 264 (459)
Q Consensus 252 ~~l~~L~~L~l~~ 264 (459)
.++++|+.|++.+
T Consensus 210 ~~~~~LevLdl~D 222 (382)
T KOG1909|consen 210 EHCPHLEVLDLRD 222 (382)
T ss_pred HhCCcceeeeccc
Confidence 4444455555544
No 57
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.05 E-value=0.0023 Score=60.75 Aligned_cols=157 Identities=15% Similarity=0.177 Sum_probs=89.6
Q ss_pred CCCCCcccEEeeccccC----cccCcccCCCCCCccEEeeccCCCCccc---------------cCCCCCCCccEEEEec
Q 039619 176 LDDNTSLETMEIFICQN----LKALPNGLRNLTSLQYLLIQDCPTIGSF---------------TANCFPTNLASVCIDY 236 (459)
Q Consensus 176 l~~l~~L~~L~l~~c~~----l~~lp~~l~~l~~L~~L~l~~c~~l~~l---------------p~~~~~~~L~~L~l~~ 236 (459)
+..+++|++|+++++-- +..+-.-+.++..|++|.+.+|- +... ...+.++.|+.+...+
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 33445666666665421 11111123445666666666653 2111 0113567888888888
Q ss_pred CcccccccccCCCCCCCCCccCEEEEeCCcCCCce-----ecCCCCCCCccCCCCcceEEeecCCCCCccC------CCC
Q 039619 237 EKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVV-----SFPPEKDTGKALPASLKHLSIWNFPNLERIS------SIE 305 (459)
Q Consensus 237 ~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~-----~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~------~l~ 305 (459)
|.+.......-...++..+.|+.+.+..+ .+. .+.... ..+++|+.|++++ |-++.-. .+.
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN---~I~~eG~~al~eal----~~~~~LevLdl~D-Ntft~egs~~LakaL~ 238 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQN---GIRPEGVTALAEAL----EHCPHLEVLDLRD-NTFTLEGSVALAKALS 238 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecc---cccCchhHHHHHHH----HhCCcceeeeccc-chhhhHHHHHHHHHhc
Confidence 77653210000003566788999998872 221 111111 3678999999999 6665432 567
Q ss_pred CCCCCCEEeccCCCCCCcCCC-------CCCCCCcceEEeeCCc
Q 039619 306 NLTSFESLQLCCCPKLQKFPD-------NGLPTSLLRLEIYGCP 342 (459)
Q Consensus 306 ~l~~L~~L~l~~c~~l~~lp~-------~~l~~sL~~L~i~~c~ 342 (459)
.++.|+.|++++|. ++.=.. ....++|+.|.+.+|.
T Consensus 239 s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 239 SWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred ccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcch
Confidence 78899999999984 332111 0125789999998885
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.88 E-value=0.0012 Score=60.73 Aligned_cols=96 Identities=19% Similarity=0.141 Sum_probs=57.5
Q ss_pred CccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC---CC
Q 039619 228 NLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS---SI 304 (459)
Q Consensus 228 ~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---~l 304 (459)
+.+.|+.+|..+.+.. .+..++.|+.|.++- +.+.++..-. .+++|++|+|.. |.+.++. .+
T Consensus 20 ~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSv---NkIssL~pl~-----rCtrLkElYLRk-N~I~sldEL~YL 84 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSV---NKISSLAPLQ-----RCTRLKELYLRK-NCIESLDELEYL 84 (388)
T ss_pred HhhhhcccCCCccHHH------HHHhcccceeEEeec---cccccchhHH-----HHHHHHHHHHHh-cccccHHHHHHH
Confidence 4445555554454433 345677777777765 4555554422 456777777776 6666666 56
Q ss_pred CCCCCCCEEeccCCCCCCcCCCC------CCCCCcceEEe
Q 039619 305 ENLTSFESLQLCCCPKLQKFPDN------GLPTSLLRLEI 338 (459)
Q Consensus 305 ~~l~~L~~L~l~~c~~l~~lp~~------~l~~sL~~L~i 338 (459)
.++++|+.|.|..+|--..-+.. ..+|+|+.|+=
T Consensus 85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 77888888888776544333321 12677777763
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.51 E-value=0.062 Score=47.52 Aligned_cols=79 Identities=23% Similarity=0.378 Sum_probs=40.7
Q ss_pred CcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCcc
Q 039619 180 TSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSV 257 (459)
Q Consensus 180 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L 257 (459)
.+...++++++ .+..+ ..+..++.|.+|.+.+ +.++.+... .+.++|+.|.+.+|.+....=.+ .+..++.|
T Consensus 42 d~~d~iDLtdN-dl~~l-~~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~---pLa~~p~L 115 (233)
T KOG1644|consen 42 DQFDAIDLTDN-DLRKL-DNLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD---PLASCPKL 115 (233)
T ss_pred cccceeccccc-chhhc-ccCCCccccceEEecC-CcceeeccchhhhccccceEEecCcchhhhhhcc---hhccCCcc
Confidence 34556666665 34333 2455677777777754 455555433 34556666666664443211000 23445555
Q ss_pred CEEEEeC
Q 039619 258 RLLTLFG 264 (459)
Q Consensus 258 ~~L~l~~ 264 (459)
++|.+-+
T Consensus 116 ~~Ltll~ 122 (233)
T KOG1644|consen 116 EYLTLLG 122 (233)
T ss_pred ceeeecC
Confidence 5555554
No 60
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.30 E-value=0.0055 Score=53.94 Aligned_cols=81 Identities=22% Similarity=0.256 Sum_probs=37.1
Q ss_pred ccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCC
Q 039619 229 LASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIEN 306 (459)
Q Consensus 229 L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~ 306 (459)
++.++.++..+.... .+ .+.++++++.|.+.+ |..+...--+. .....++|+.|+|++|+.+++-. .+..
T Consensus 103 IeaVDAsds~I~~eG-le---~L~~l~~i~~l~l~~--ck~~dD~~L~~--l~~~~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEG-LE---HLRDLRSIKSLSLAN--CKYFDDWCLER--LGGLAPSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred EEEEecCCchHHHHH-HH---HHhccchhhhheecc--ccchhhHHHHH--hcccccchheeeccCCCeechhHHHHHHH
Confidence 444554444443222 22 345566666666666 55543211100 00023455555555555555444 4444
Q ss_pred CCCCCEEeccC
Q 039619 307 LTSFESLQLCC 317 (459)
Q Consensus 307 l~~L~~L~l~~ 317 (459)
+++|+.|.+.+
T Consensus 175 lknLr~L~l~~ 185 (221)
T KOG3864|consen 175 LKNLRRLHLYD 185 (221)
T ss_pred hhhhHHHHhcC
Confidence 55555555544
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.05 E-value=0.0027 Score=58.57 Aligned_cols=97 Identities=22% Similarity=0.282 Sum_probs=61.1
Q ss_pred ccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCc--ccCCCCCCccEE
Q 039619 132 ATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALP--NGLRNLTSLQYL 209 (459)
Q Consensus 132 ~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp--~~l~~l~~L~~L 209 (459)
.+.++|+..+| .|.+|.+...+ +.|+.|.|+- +.+..+ ..+..+++|++|+|..+ .+.++- ..+.++++|+.|
T Consensus 19 ~~vkKLNcwg~-~L~DIsic~kM-p~lEVLsLSv-NkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDISICEKM-PLLEVLSLSV-NKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCC-CccHHHHHHhc-ccceeEEeec-cccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 36677788776 67777777777 7888888875 455555 34667788888887764 343332 245677788888
Q ss_pred eeccCCCCccccCC------CCCCCccEEE
Q 039619 210 LIQDCPTIGSFTAN------CFPTNLASVC 233 (459)
Q Consensus 210 ~l~~c~~l~~lp~~------~~~~~L~~L~ 233 (459)
.|..++-...-+.. ..++||+.|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77765544333221 1255666665
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.85 E-value=0.025 Score=51.83 Aligned_cols=11 Identities=27% Similarity=0.060 Sum_probs=5.0
Q ss_pred CCCcceEEeeC
Q 039619 330 PTSLLRLEIYG 340 (459)
Q Consensus 330 ~~sL~~L~i~~ 340 (459)
+++|+.|+-.+
T Consensus 142 l~~L~~LD~~d 152 (260)
T KOG2739|consen 142 LPSLKYLDGCD 152 (260)
T ss_pred hhhhccccccc
Confidence 44555544433
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.44 E-value=0.092 Score=49.23 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=21.6
Q ss_pred CCcceEEeecCCCCCccC---CCCCCCCCCEEeccCCCCCCcC
Q 039619 285 ASLKHLSIWNFPNLERIS---SIENLTSFESLQLCCCPKLQKF 324 (459)
Q Consensus 285 ~~L~~L~l~~c~~l~~l~---~l~~l~~L~~L~l~~c~~l~~l 324 (459)
+.+-.|.++. +++.++. .+..+++|..|.+.+.|-...+
T Consensus 224 p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 224 PSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred Ccchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 3444555554 5555544 5556666666666665544443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.18 E-value=0.86 Score=37.27 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=13.4
Q ss_pred CCCCCcccEEeeccccCcccCcc-cCCCCCCccEEeecc
Q 039619 176 LDDNTSLETMEIFICQNLKALPN-GLRNLTSLQYLLIQD 213 (459)
Q Consensus 176 l~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~ 213 (459)
+..+++|+.+.+.. .++.++. .+..+++|+.+.+.+
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS
T ss_pred HhCCCCCCEEEECC--CeeEeChhhcccccccccccccc
Confidence 34445566665542 2333322 344455566665543
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.92 E-value=0.087 Score=28.81 Aligned_cols=9 Identities=22% Similarity=0.183 Sum_probs=3.6
Q ss_pred ccEEeeccc
Q 039619 182 LETMEIFIC 190 (459)
Q Consensus 182 L~~L~l~~c 190 (459)
|++|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 334444443
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.77 E-value=0.1 Score=28.51 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=12.8
Q ss_pred ccceEEeecccCCccccccCC
Q 039619 157 ALKHLYIISCSNLESIAEGLD 177 (459)
Q Consensus 157 ~L~~L~l~~c~~l~~lp~~l~ 177 (459)
+|++|++++| .++.+|++++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSS-EESEEGTTTT
T ss_pred CccEEECCCC-cCEeCChhhc
Confidence 4677777776 5666666554
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.79 E-value=0.13 Score=47.27 Aligned_cols=106 Identities=17% Similarity=0.178 Sum_probs=49.3
Q ss_pred CCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcc--cccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCC
Q 039619 202 NLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKI--YKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDT 279 (459)
Q Consensus 202 ~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l--~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~ 279 (459)
.+..|+.|++.++ .++++.....+++|++|.++.|.. ...+ .. ....+++|++|+++++....+.+++...
T Consensus 41 ~~~~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l-~v---l~e~~P~l~~l~ls~Nki~~lstl~pl~-- 113 (260)
T KOG2739|consen 41 EFVELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGGL-EV---LAEKAPNLKVLNLSGNKIKDLSTLRPLK-- 113 (260)
T ss_pred cccchhhhhhhcc-ceeecccCCCcchhhhhcccCCcccccccc-ee---hhhhCCceeEEeecCCccccccccchhh--
Confidence 3455666666554 233333333456777777777532 2111 11 2234577777777762001122333221
Q ss_pred CccCCCCcceEEeecCCCCCccC-----CCCCCCCCCEEeccCC
Q 039619 280 GKALPASLKHLSIWNFPNLERIS-----SIENLTSFESLQLCCC 318 (459)
Q Consensus 280 ~~~~~~~L~~L~l~~c~~l~~l~-----~l~~l~~L~~L~l~~c 318 (459)
.+.+|..|++.+|.... +. .+.-+++|++|+-..+
T Consensus 114 ---~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 114 ---ELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred ---hhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 34456666666653322 21 2233455555555443
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.06 E-value=0.19 Score=25.61 Aligned_cols=9 Identities=22% Similarity=0.346 Sum_probs=3.5
Q ss_pred CCEEeccCC
Q 039619 310 FESLQLCCC 318 (459)
Q Consensus 310 L~~L~l~~c 318 (459)
|+.|++++|
T Consensus 3 L~~L~l~~n 11 (17)
T PF13504_consen 3 LRTLDLSNN 11 (17)
T ss_dssp -SEEEETSS
T ss_pred cCEEECCCC
Confidence 444444443
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.84 E-value=1.7 Score=35.46 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=18.0
Q ss_pred cccceEEeecccCCcccc-ccCCCCCcccEEeeccccCcccCcc-cCCCCCCccEEee
Q 039619 156 KALKHLYIISCSNLESIA-EGLDDNTSLETMEIFICQNLKALPN-GLRNLTSLQYLLI 211 (459)
Q Consensus 156 ~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l 211 (459)
++|+.+.+.. .++.++ ..+..+++|+.+.+.+ .+..++. .+..+.+|+.+.+
T Consensus 12 ~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 12 SNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEE
T ss_pred CCCCEEEECC--CeeEeChhhcccccccccccccc--cccccceeeeecccccccccc
Confidence 3445555432 233342 2244444555555543 2333322 2334445555555
No 70
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.56 E-value=0.24 Score=46.50 Aligned_cols=204 Identities=15% Similarity=0.150 Sum_probs=107.3
Q ss_pred cccceEEeecccCCccc---cccCCCCCcccEEeeccccCcccCcccC-CCCCCccEEeeccCCCCccccCC---CCCCC
Q 039619 156 KALKHLYIISCSNLESI---AEGLDDNTSLETMEIFICQNLKALPNGL-RNLTSLQYLLIQDCPTIGSFTAN---CFPTN 228 (459)
Q Consensus 156 ~~L~~L~l~~c~~l~~l---p~~l~~l~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~~l~~lp~~---~~~~~ 228 (459)
+.+++|++.++ .+..+ -..+.++|.|++|+++.+ .+.+.-..+ ....+|+.|.+.| ..+..-... ..++.
T Consensus 71 ~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 71 TDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNG-TGLSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcC-CCCChhhhhhhhhcchh
Confidence 77888888873 45444 334567899999999765 333221222 2456788888865 222111111 12455
Q ss_pred ccEEEEecCcccccccccCCCCCC-CCCccCEEEEeCCcCCCc-----eecCCCCCCCccCCCCcceEEeecCCCCCccC
Q 039619 229 LASVCIDYEKIYKPLILERGPGLH-RFTSVRLLTLFGGECCGV-----VSFPPEKDTGKALPASLKHLSIWNFPNLERIS 302 (459)
Q Consensus 229 L~~L~l~~~~l~~~~~~~~~~~l~-~l~~L~~L~l~~~~c~~l-----~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 302 (459)
+++|+++.|++....... .... --+.+++|...+ |... ..+. ..++++..+-+..| -+++..
T Consensus 148 vtelHmS~N~~rq~n~Dd--~c~e~~s~~v~tlh~~~--c~~~~w~~~~~l~-------r~Fpnv~sv~v~e~-PlK~~s 215 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDD--NCIEDWSTEVLTLHQLP--CLEQLWLNKNKLS-------RIFPNVNSVFVCEG-PLKTES 215 (418)
T ss_pred hhhhhhccchhhhhcccc--ccccccchhhhhhhcCC--cHHHHHHHHHhHH-------hhcccchheeeecC-cccchh
Confidence 566666654322110000 0001 112444455544 3221 1111 13456777777764 344443
Q ss_pred ---CCCCCCCCCEEeccCCCCCCcCCC---CCCCCCcceEEeeCCchhHHhhhcCcCC-ccccccCCCeEEeCceeeeCH
Q 039619 303 ---SIENLTSFESLQLCCCPKLQKFPD---NGLPTSLLRLEIYGCPLIEERFEKDKGQ-YWSLIADIPCVRIDCHYVIDP 375 (459)
Q Consensus 303 ---~l~~l~~L~~L~l~~c~~l~~lp~---~~l~~sL~~L~i~~c~~L~~~~~~~~~~-~~~~i~~i~~l~~~~~~~l~~ 375 (459)
+...++.+.-|.+.. .++.+... -.-.++|..|.+.+.|.....-. ++ ..--|++++++.+-+..++..
T Consensus 216 ~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~---~err~llIaRL~~v~vLNGskIss 291 (418)
T KOG2982|consen 216 SEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG---GERRFLLIARLTKVQVLNGSKISS 291 (418)
T ss_pred hcccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC---CcceEEEEeeccceEEecCcccch
Confidence 444566666666655 34544332 11158899999999886654311 12 234577888888877777765
Q ss_pred HHH
Q 039619 376 KAQ 378 (459)
Q Consensus 376 ~~~ 378 (459)
..+
T Consensus 292 ~er 294 (418)
T KOG2982|consen 292 RER 294 (418)
T ss_pred hhh
Confidence 443
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.43 E-value=0.06 Score=47.61 Aligned_cols=61 Identities=26% Similarity=0.349 Sum_probs=41.3
Q ss_pred CCCCcceEEeecCCCCCccC--CC-CCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCCch
Q 039619 283 LPASLKHLSIWNFPNLERIS--SI-ENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGCPL 343 (459)
Q Consensus 283 ~~~~L~~L~l~~c~~l~~l~--~l-~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~~ 343 (459)
.+++++.|.+.+|..+.+.. .+ +-.++|+.|+|++|+++++-.-..+ +++|+.|.+.+.|.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 45677788888887776654 22 2457888888888888776443222 67788888877653
No 72
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=88.59 E-value=0.044 Score=45.46 Aligned_cols=77 Identities=16% Similarity=0.235 Sum_probs=40.5
Q ss_pred cCcEEEeecCCCceeec--cccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEe
Q 039619 133 TLENIYVDRCSKLAFLS--LRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLL 210 (459)
Q Consensus 133 ~L~~L~l~~c~~l~~l~--~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~ 210 (459)
.|+..+|++ +.++.+| +...+ +.++.|++.+ +.+.++|+.+..++.|+.|+++.+ .+...|.-+..+.+|-.|+
T Consensus 54 el~~i~ls~-N~fk~fp~kft~kf-~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 54 ELTKISLSD-NGFKKFPKKFTIKF-PTATTLNLAN-NEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred eEEEEeccc-chhhhCCHHHhhcc-chhhhhhcch-hhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHHhc
Confidence 344445544 3444444 11223 4556666665 356666666666666666666654 3444454444455555555
Q ss_pred ecc
Q 039619 211 IQD 213 (459)
Q Consensus 211 l~~ 213 (459)
..+
T Consensus 130 s~~ 132 (177)
T KOG4579|consen 130 SPE 132 (177)
T ss_pred CCC
Confidence 443
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=83.45 E-value=0.18 Score=46.67 Aligned_cols=40 Identities=15% Similarity=0.107 Sum_probs=21.3
Q ss_pred cCCCCCcccEEeeccccCcccCcc----cCCCCCCccEEeeccC
Q 039619 175 GLDDNTSLETMEIFICQNLKALPN----GLRNLTSLQYLLIQDC 214 (459)
Q Consensus 175 ~l~~l~~L~~L~l~~c~~l~~lp~----~l~~l~~L~~L~l~~c 214 (459)
.+..|++|+..+++++.--...|+ .+.+-+.|++|.+++|
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 344567777777766532222222 3345566677766654
No 74
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=83.02 E-value=0.18 Score=41.96 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=36.8
Q ss_pred CCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCC
Q 039619 252 HRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCC 318 (459)
Q Consensus 252 ~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c 318 (459)
.....|+..++++ +.++.+|..+. ..++.++.|++.+ +.+.++| .+..++.|+.|+++.+
T Consensus 50 ~~~~el~~i~ls~---N~fk~fp~kft---~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 50 SKGYELTKISLSD---NGFKKFPKKFT---IKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred hCCceEEEEeccc---chhhhCCHHHh---hccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccC
Confidence 3445566666666 46666665431 2344666677766 6777777 6666777777777664
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=78.82 E-value=1.5 Score=24.92 Aligned_cols=15 Identities=20% Similarity=0.574 Sum_probs=7.5
Q ss_pred CCCCEEeccCCCCCC
Q 039619 308 TSFESLQLCCCPKLQ 322 (459)
Q Consensus 308 ~~L~~L~l~~c~~l~ 322 (459)
++|++|++++|++++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 445555555555443
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=61.49 E-value=6.5 Score=22.04 Aligned_cols=18 Identities=22% Similarity=0.456 Sum_probs=8.9
Q ss_pred CCCCEEeccCCCCCCcCCC
Q 039619 308 TSFESLQLCCCPKLQKFPD 326 (459)
Q Consensus 308 ~~L~~L~l~~c~~l~~lp~ 326 (459)
++|++|++++ +.++.+|.
T Consensus 2 ~~L~~L~L~~-N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSN-NQLSSLPP 19 (26)
T ss_pred CCCCEEECCC-CcCCcCCH
Confidence 4455555554 24555543
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=61.49 E-value=6.5 Score=22.04 Aligned_cols=18 Identities=22% Similarity=0.456 Sum_probs=8.9
Q ss_pred CCCCEEeccCCCCCCcCCC
Q 039619 308 TSFESLQLCCCPKLQKFPD 326 (459)
Q Consensus 308 ~~L~~L~l~~c~~l~~lp~ 326 (459)
++|++|++++ +.++.+|.
T Consensus 2 ~~L~~L~L~~-N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSN-NQLSSLPP 19 (26)
T ss_pred CCCCEEECCC-CcCCcCCH
Confidence 4455555554 24555543
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=56.64 E-value=6.2 Score=22.56 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=10.3
Q ss_pred CCCcCceEEeCCCCCCCCCccc
Q 039619 88 SVTLKDPEVLDCPVCYEPLTIP 109 (459)
Q Consensus 88 p~~L~~L~l~~c~~l~~l~~lp 109 (459)
|++|++|++++ +.+..+|
T Consensus 1 P~~L~~L~vs~----N~Lt~LP 18 (26)
T smart00364 1 PPSLKELNVSN----NQLTSLP 18 (26)
T ss_pred CcccceeecCC----CccccCc
Confidence 34566666666 4455555
No 79
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=55.43 E-value=20 Score=23.18 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=9.5
Q ss_pred CCCCCCCcCceEEeC
Q 039619 84 NGPVSVTLKDPEVLD 98 (459)
Q Consensus 84 ~~~lp~~L~~L~l~~ 98 (459)
.+.+|+++++|.+.+
T Consensus 7 ~~~iP~~l~~L~~g~ 21 (44)
T PF05725_consen 7 PGSIPSSLKSLIFGS 21 (44)
T ss_pred CCeeCCCCeEEEECC
Confidence 345677777777733
No 80
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=50.46 E-value=4.5 Score=37.81 Aligned_cols=104 Identities=14% Similarity=0.106 Sum_probs=52.8
Q ss_pred cccceEEeecccCCcccc----ccCCCCCcccEEeeccccCcccCcc--------------cCCCCCCccEEeeccCCCC
Q 039619 156 KALKHLYIISCSNLESIA----EGLDDNTSLETMEIFICQNLKALPN--------------GLRNLTSLQYLLIQDCPTI 217 (459)
Q Consensus 156 ~~L~~L~l~~c~~l~~lp----~~l~~l~~L~~L~l~~c~~l~~lp~--------------~l~~l~~L~~L~l~~c~~l 217 (459)
|.|+..+++++-.-...| +-+.+-+.|++|.+.+| .+..+.. -...-+.|+...... +++
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr-NRl 169 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR-NRL 169 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-chh
Confidence 788888888753222222 23456688888988887 4442211 112234566665533 344
Q ss_pred ccccCC------CCCCCccEEEEecCcccccc----cccCCCCCCCCCccCEEEEeC
Q 039619 218 GSFTAN------CFPTNLASVCIDYEKIYKPL----ILERGPGLHRFTSVRLLTLFG 264 (459)
Q Consensus 218 ~~lp~~------~~~~~L~~L~l~~~~l~~~~----~~~~~~~l~~l~~L~~L~l~~ 264 (459)
...+.. ..-.+|+.+.+..|.+.... ... ++..+.+|+.|++.+
T Consensus 170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~---gl~y~~~LevLDlqD 223 (388)
T COG5238 170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFL---GLFYSHSLEVLDLQD 223 (388)
T ss_pred ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHH---HHHHhCcceeeeccc
Confidence 443321 11246666666665554110 000 234455666666665
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=36.41 E-value=24 Score=19.19 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=4.4
Q ss_pred CcceEEeeCCc
Q 039619 332 SLLRLEIYGCP 342 (459)
Q Consensus 332 sL~~L~i~~c~ 342 (459)
+|++|++++|.
T Consensus 3 ~L~~L~l~~n~ 13 (24)
T PF13516_consen 3 NLETLDLSNNQ 13 (24)
T ss_dssp T-SEEE-TSSB
T ss_pred CCCEEEccCCc
Confidence 44555555543
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=25.77 E-value=48 Score=18.91 Aligned_cols=9 Identities=22% Similarity=0.416 Sum_probs=4.2
Q ss_pred CcceEEeec
Q 039619 286 SLKHLSIWN 294 (459)
Q Consensus 286 ~L~~L~l~~ 294 (459)
+|+.|++++
T Consensus 3 ~L~~L~L~~ 11 (26)
T smart00365 3 NLEELDLSQ 11 (26)
T ss_pred ccCEEECCC
Confidence 444444444
No 83
>PF15028 PTCRA: Pre-T-cell antigen receptor; PDB: 3OF6_E.
Probab=20.57 E-value=1e+02 Score=25.11 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=20.9
Q ss_pred CceeeeEEeecccccceeEEEEec-c-------c-----ccccccccc
Q 039619 423 GLRAPLVVTGLSLSNRIKLYYYCD-P-------Y-----ELGKWASLS 457 (459)
Q Consensus 423 gf~~~~~~~~~~~~~~~~~~~~~~-~-------~-----~~~~~~~~~ 457 (459)
-..+|.|+..-....+-.|||... + | .||+|+++.
T Consensus 24 tlVvCLVLDvappg~ds~iWFSagNGs~lDAFTYgPspa~DGTWtsla 71 (154)
T PF15028_consen 24 TLVVCLVLDVAPPGLDSPIWFSAGNGSALDAFTYGPSPAGDGTWTSLA 71 (154)
T ss_dssp EEEEEEEEEE-SSSS----EEEESSS-EE--EE---EEETTSCEEEEE
T ss_pred EEEEEEEEeccCCCCCCCeEEEcCCCccccceeeCCCCCCCCceeeee
Confidence 467899988777777777777621 1 1 599999874
Done!