Query 039619
Match_columns 459
No_of_seqs 553 out of 2953
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 19:51:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039619.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039619hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 99.9 5.4E-21 1.9E-25 187.0 19.7 293 23-370 42-343 (347)
2 3rgz_A Protein brassinosteroid 99.9 5.2E-22 1.8E-26 214.6 11.5 330 22-365 340-765 (768)
3 2id5_A Lingo-1, leucine rich r 99.8 2.3E-19 8E-24 183.2 27.3 284 23-342 30-331 (477)
4 4fmz_A Internalin; leucine ric 99.8 3.1E-20 1E-24 181.6 18.1 208 110-341 134-343 (347)
5 4fcg_A Uncharacterized protein 99.8 8.3E-20 2.8E-24 177.4 18.1 214 110-339 83-309 (328)
6 3rgz_A Protein brassinosteroid 99.8 2.5E-20 8.6E-25 201.4 14.4 176 156-342 343-525 (768)
7 4fcg_A Uncharacterized protein 99.8 1.6E-19 5.4E-24 175.4 18.3 210 89-317 81-310 (328)
8 3v47_A TOLL-like receptor 5B a 99.8 5.8E-19 2E-23 179.0 21.1 286 24-341 29-381 (455)
9 1o6v_A Internalin A; bacterial 99.8 7.4E-19 2.5E-23 179.0 21.0 98 156-264 177-274 (466)
10 4eco_A Uncharacterized protein 99.8 6.2E-19 2.1E-23 186.4 21.1 319 21-371 202-577 (636)
11 4eco_A Uncharacterized protein 99.8 9E-19 3.1E-23 185.2 21.3 295 23-342 247-598 (636)
12 4ecn_A Leucine-rich repeat pro 99.8 1.1E-18 3.8E-23 188.8 22.1 322 21-371 444-817 (876)
13 3o6n_A APL1; leucine-rich repe 99.8 3.7E-18 1.2E-22 169.7 22.3 297 23-371 43-350 (390)
14 1o6v_A Internalin A; bacterial 99.8 3.1E-18 1.1E-22 174.4 22.3 313 21-374 64-389 (466)
15 3vq2_A TLR4, TOLL-like recepto 99.8 2.9E-18 1E-22 180.2 22.3 190 133-341 308-507 (606)
16 4ecn_A Leucine-rich repeat pro 99.8 4.9E-18 1.7E-22 183.8 24.0 296 23-342 489-838 (876)
17 2id5_A Lingo-1, leucine rich r 99.8 6.5E-18 2.2E-22 172.4 23.0 212 87-317 30-257 (477)
18 3t6q_A CD180 antigen; protein- 99.8 3.3E-17 1.1E-21 172.2 28.9 175 156-342 278-460 (606)
19 3vq2_A TLR4, TOLL-like recepto 99.8 7.5E-18 2.5E-22 177.1 23.5 232 90-342 308-556 (606)
20 2z81_A CD282 antigen, TOLL-lik 99.8 1.2E-17 4.1E-22 173.4 24.0 38 23-61 24-61 (549)
21 3t6q_A CD180 antigen; protein- 99.8 7.8E-18 2.7E-22 177.0 22.5 218 110-342 327-558 (606)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.5E-17 1.2E-21 170.6 27.0 37 24-61 51-87 (562)
23 1xku_A Decorin; proteoglycan, 99.8 2.5E-17 8.5E-22 159.9 23.9 234 86-343 49-305 (330)
24 3bz5_A Internalin-J, INLJ; leu 99.8 1.1E-17 3.7E-22 169.8 21.9 266 23-345 40-321 (457)
25 1ogq_A PGIP-2, polygalacturona 99.8 4.9E-19 1.7E-23 170.8 11.0 239 89-345 50-305 (313)
26 3oja_B Anopheles plasmodium-re 99.8 1.1E-17 3.8E-22 175.6 21.9 280 24-342 50-356 (597)
27 3bz5_A Internalin-J, INLJ; leu 99.8 3.4E-17 1.2E-21 166.1 24.2 267 20-342 59-350 (457)
28 2z63_A TOLL-like receptor 4, v 99.8 7.8E-18 2.7E-22 175.5 19.7 212 110-341 284-504 (570)
29 2z7x_B TOLL-like receptor 1, v 99.8 4.6E-17 1.6E-21 167.9 24.9 127 201-341 321-454 (520)
30 2ft3_A Biglycan; proteoglycan, 99.8 2.3E-17 7.7E-22 160.4 20.6 256 87-370 52-330 (332)
31 3v47_A TOLL-like receptor 5B a 99.8 2.2E-17 7.4E-22 167.4 21.1 291 20-342 49-406 (455)
32 1jl5_A Outer protein YOPM; leu 99.8 2.4E-17 8.1E-22 167.1 20.6 193 87-317 89-286 (454)
33 3zyj_A Leucine-rich repeat-con 99.8 7.6E-17 2.6E-21 162.9 22.9 213 110-342 66-290 (440)
34 3zyi_A Leucine-rich repeat-con 99.8 5.6E-17 1.9E-21 164.4 22.0 213 110-342 77-301 (452)
35 2z81_A CD282 antigen, TOLL-lik 99.7 1E-16 3.6E-21 166.3 23.8 191 158-373 312-510 (549)
36 1ziw_A TOLL-like receptor 3; i 99.7 1.6E-16 5.6E-21 169.2 25.5 303 21-341 268-594 (680)
37 2z66_A Variable lymphocyte rec 99.7 3.6E-17 1.2E-21 157.0 18.3 214 110-342 30-259 (306)
38 2z7x_B TOLL-like receptor 1, v 99.7 4.6E-17 1.6E-21 167.9 20.1 98 24-142 20-125 (520)
39 2xwt_C Thyrotropin receptor; s 99.7 3.8E-17 1.3E-21 151.1 17.0 208 118-344 20-239 (239)
40 3j0a_A TOLL-like receptor 5; m 99.7 4.4E-16 1.5E-20 169.9 28.1 121 204-341 266-391 (844)
41 3g06_A SSPH2 (leucine-rich rep 99.7 3.6E-16 1.2E-20 163.8 26.1 249 26-342 41-295 (622)
42 1ziw_A TOLL-like receptor 3; i 99.7 3.8E-16 1.3E-20 166.4 26.8 310 25-370 248-594 (680)
43 1jl5_A Outer protein YOPM; leu 99.7 4.5E-16 1.5E-20 157.7 25.4 51 285-341 317-367 (454)
44 3zyi_A Leucine-rich repeat-con 99.7 1.1E-16 3.7E-21 162.3 20.3 213 86-319 72-301 (452)
45 2z80_A TOLL-like receptor 2, v 99.7 2.4E-17 8.3E-22 161.6 14.4 238 87-342 50-312 (353)
46 1xku_A Decorin; proteoglycan, 99.7 8E-16 2.7E-20 149.2 24.5 272 26-341 32-329 (330)
47 3o6n_A APL1; leucine-rich repe 99.7 8.2E-17 2.8E-21 159.9 17.7 228 110-371 95-329 (390)
48 3zyj_A Leucine-rich repeat-con 99.7 1.5E-16 5.1E-21 160.7 19.9 214 86-319 61-290 (440)
49 2ft3_A Biglycan; proteoglycan, 99.7 2.6E-16 9E-21 152.8 20.5 271 26-342 34-331 (332)
50 3j0a_A TOLL-like receptor 5; m 99.7 2E-15 6.9E-20 164.7 29.4 144 180-341 266-411 (844)
51 3g06_A SSPH2 (leucine-rich rep 99.7 7.3E-16 2.5E-20 161.4 24.8 231 23-319 59-295 (622)
52 1ogq_A PGIP-2, polygalacturona 99.7 5.9E-17 2E-21 156.2 14.2 219 110-342 52-279 (313)
53 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.4E-15 4.7E-20 158.5 25.4 152 177-342 350-508 (562)
54 1ozn_A Reticulon 4 receptor; N 99.7 3.8E-16 1.3E-20 148.3 19.2 205 119-342 21-236 (285)
55 3oja_B Anopheles plasmodium-re 99.7 2.7E-16 9.3E-21 165.0 19.4 248 90-371 76-356 (597)
56 1ozn_A Reticulon 4 receptor; N 99.7 1.6E-15 5.3E-20 144.0 19.4 194 110-319 34-236 (285)
57 2z63_A TOLL-like receptor 4, v 99.7 1.4E-15 4.9E-20 158.3 20.8 230 89-342 282-529 (570)
58 2xwt_C Thyrotropin receptor; s 99.7 1.4E-15 4.7E-20 140.5 17.9 195 110-320 33-238 (239)
59 2z66_A Variable lymphocyte rec 99.7 5.4E-16 1.8E-20 148.7 15.5 215 86-319 25-259 (306)
60 4ay9_X Follicle-stimulating ho 99.7 8.5E-15 2.9E-19 143.3 21.9 216 110-340 32-255 (350)
61 2o6q_A Variable lymphocyte rec 99.6 7.3E-15 2.5E-19 138.3 19.8 192 133-342 17-216 (270)
62 1p9a_G Platelet glycoprotein I 99.6 5.7E-15 2E-19 140.6 18.5 191 133-342 11-206 (290)
63 2z80_A TOLL-like receptor 2, v 99.6 1.4E-15 4.8E-20 148.9 14.2 215 89-319 76-312 (353)
64 1wwl_A Monocyte differentiatio 99.6 1.4E-16 4.9E-21 153.3 5.4 232 90-342 44-307 (312)
65 4ay9_X Follicle-stimulating ho 99.6 1.9E-14 6.4E-19 140.8 19.7 233 112-369 13-255 (350)
66 3o53_A Protein LRIM1, AGAP0063 99.6 2.5E-15 8.6E-20 145.0 13.0 227 89-345 34-276 (317)
67 1h6u_A Internalin H; cell adhe 99.6 4.7E-15 1.6E-19 142.4 13.9 166 156-342 63-228 (308)
68 3o53_A Protein LRIM1, AGAP0063 99.6 2.8E-15 9.5E-20 144.7 11.3 209 110-344 36-250 (317)
69 3oja_A Leucine-rich immune mol 99.6 4.6E-15 1.6E-19 151.6 13.3 203 88-319 33-248 (487)
70 3oja_A Leucine-rich immune mol 99.6 5E-15 1.7E-19 151.4 13.4 209 110-344 36-250 (487)
71 1h6u_A Internalin H; cell adhe 99.6 6.4E-15 2.2E-19 141.5 13.4 192 110-326 43-234 (308)
72 2z62_A TOLL-like receptor 4, v 99.6 1.7E-14 5.8E-19 136.2 15.9 77 133-213 53-133 (276)
73 1p9a_G Platelet glycoprotein I 99.6 3.2E-14 1.1E-18 135.4 17.9 190 110-319 12-206 (290)
74 2o6q_A Variable lymphocyte rec 99.6 7.5E-14 2.6E-18 131.3 19.0 190 111-319 19-216 (270)
75 2z62_A TOLL-like receptor 4, v 99.6 4.5E-14 1.5E-18 133.2 16.2 204 120-341 18-234 (276)
76 4glp_A Monocyte differentiatio 99.5 4.3E-14 1.5E-18 135.8 13.6 191 110-317 93-303 (310)
77 1wwl_A Monocyte differentiatio 99.5 2.9E-14 1E-18 137.1 11.6 194 110-319 97-307 (312)
78 2ast_B S-phase kinase-associat 99.5 9.9E-16 3.4E-20 148.7 0.8 231 88-339 46-301 (336)
79 3m19_A Variable lymphocyte rec 99.5 5E-13 1.7E-17 124.2 16.8 170 133-342 15-190 (251)
80 3rfs_A Internalin B, repeat mo 99.5 1.5E-13 5.2E-18 129.4 13.3 170 110-319 43-216 (272)
81 4glp_A Monocyte differentiatio 99.5 1.4E-13 4.7E-18 132.3 13.0 200 132-342 91-305 (310)
82 2p1m_B Transport inhibitor res 99.5 1.2E-15 4.1E-20 159.8 -1.8 339 23-379 103-524 (594)
83 3rfs_A Internalin B, repeat mo 99.5 9.1E-13 3.1E-17 124.0 17.6 172 153-342 39-216 (272)
84 3m19_A Variable lymphocyte rec 99.5 9.8E-13 3.3E-17 122.3 17.6 171 157-371 15-190 (251)
85 1h6t_A Internalin B; cell adhe 99.5 1.7E-13 5.8E-18 130.4 11.3 120 132-264 46-165 (291)
86 1h6t_A Internalin B; cell adhe 99.5 1.8E-13 6.3E-18 130.2 11.2 169 152-342 43-211 (291)
87 4g8a_A TOLL-like receptor 4; l 99.5 5E-12 1.7E-16 132.9 22.8 232 89-342 328-578 (635)
88 3ogk_B Coronatine-insensitive 99.5 2.4E-14 8.2E-19 149.8 4.7 234 129-375 267-527 (592)
89 3cvr_A Invasion plasmid antige 99.4 8.1E-13 2.8E-17 136.8 15.4 173 110-319 61-241 (571)
90 4ezg_A Putative uncharacterize 99.4 5.9E-13 2E-17 119.0 12.1 145 110-264 46-190 (197)
91 1m9s_A Internalin B; cell inva 99.4 5E-13 1.7E-17 139.7 10.6 140 110-264 45-184 (605)
92 4ezg_A Putative uncharacterize 99.4 8.1E-13 2.8E-17 118.1 10.5 145 156-317 44-190 (197)
93 2ast_B S-phase kinase-associat 99.4 1.9E-14 6.4E-19 139.7 -0.3 218 110-341 49-282 (336)
94 4g8a_A TOLL-like receptor 4; l 99.4 6.8E-12 2.3E-16 131.9 18.7 218 89-319 349-578 (635)
95 1m9s_A Internalin B; cell inva 99.4 7.3E-13 2.5E-17 138.4 11.0 182 120-325 32-213 (605)
96 1xeu_A Internalin C; cellular 99.4 4.1E-13 1.4E-17 125.8 7.6 163 133-318 20-182 (263)
97 3cvr_A Invasion plasmid antige 99.4 7E-12 2.4E-16 129.8 16.6 176 132-343 59-242 (571)
98 3ogk_B Coronatine-insensitive 99.4 2.8E-14 9.6E-19 149.3 -1.5 218 110-342 272-524 (592)
99 1xeu_A Internalin C; cellular 99.3 2.2E-12 7.5E-17 120.8 7.7 167 153-342 17-183 (263)
100 1z7x_W Ribonuclease inhibitor; 99.3 1.8E-14 6E-19 146.1 -8.4 289 23-342 26-381 (461)
101 3e6j_A Variable lymphocyte rec 99.3 3.6E-11 1.2E-15 110.1 14.4 135 168-318 30-169 (229)
102 2p1m_B Transport inhibitor res 99.3 3.1E-14 1.1E-18 148.9 -8.2 289 23-340 64-441 (594)
103 2xot_A Amphoterin-induced prot 99.3 1.6E-11 5.6E-16 120.4 11.8 120 135-264 21-145 (361)
104 2v9t_B SLIT homolog 2 protein 99.2 2.3E-10 7.7E-15 104.0 15.0 144 160-342 15-163 (220)
105 2o6s_A Variable lymphocyte rec 99.2 1.5E-10 5.1E-15 104.1 13.0 125 131-264 27-157 (208)
106 3e6j_A Variable lymphocyte rec 99.2 3E-10 1E-14 103.9 14.7 145 182-342 21-170 (229)
107 1z7x_W Ribonuclease inhibitor; 99.2 3.7E-13 1.3E-17 136.3 -5.9 222 133-371 86-352 (461)
108 2v70_A SLIT-2, SLIT homolog 2 99.2 2.5E-10 8.7E-15 103.7 13.4 61 250-318 100-163 (220)
109 2xot_A Amphoterin-induced prot 99.2 1.8E-10 6.2E-15 112.9 13.4 167 158-342 20-200 (361)
110 2v9t_B SLIT homolog 2 protein 99.2 4.8E-10 1.7E-14 101.8 14.8 146 135-319 14-163 (220)
111 2o6s_A Variable lymphocyte rec 99.1 9.1E-10 3.1E-14 98.9 15.8 127 156-318 28-158 (208)
112 2ca6_A RAN GTPase-activating p 99.1 1.5E-12 5.2E-17 128.9 -4.5 35 307-342 273-314 (386)
113 2v70_A SLIT-2, SLIT homolog 2 99.1 9.9E-10 3.4E-14 99.7 13.9 141 112-264 15-162 (220)
114 2ca6_A RAN GTPase-activating p 99.1 3.4E-12 1.2E-16 126.4 -3.7 216 90-319 33-314 (386)
115 1dce_A Protein (RAB geranylger 99.1 1.5E-12 5.1E-17 135.2 -7.2 106 205-326 442-550 (567)
116 2ell_A Acidic leucine-rich nuc 99.1 3E-10 1E-14 98.4 7.9 56 156-214 24-81 (168)
117 1dce_A Protein (RAB geranylger 99.0 1.7E-12 5.8E-17 134.8 -7.9 116 182-314 443-566 (567)
118 2ell_A Acidic leucine-rich nuc 99.0 4.9E-10 1.7E-14 97.0 8.6 127 178-318 22-157 (168)
119 3goz_A Leucine-rich repeat-con 99.0 5.2E-12 1.8E-16 123.9 -5.6 32 286-318 226-263 (362)
120 3goz_A Leucine-rich repeat-con 99.0 1.5E-11 5.3E-16 120.6 -3.4 56 285-342 196-264 (362)
121 2je0_A Acidic leucine-rich nuc 98.9 5.5E-10 1.9E-14 94.7 4.7 102 156-264 17-122 (149)
122 2je0_A Acidic leucine-rich nuc 98.9 5.8E-10 2E-14 94.5 4.8 80 179-264 16-97 (149)
123 3sb4_A Hypothetical leucine ri 98.9 5.3E-09 1.8E-13 101.0 11.8 33 156-190 101-134 (329)
124 2wfh_A SLIT homolog 2 protein 98.9 1.2E-08 4.1E-13 90.5 11.9 121 160-318 14-136 (193)
125 2wfh_A SLIT homolog 2 protein 98.9 1.3E-08 4.3E-13 90.4 11.4 120 135-264 13-135 (193)
126 4b8c_D Glucose-repressible alc 98.9 3E-10 1E-14 121.5 0.2 144 90-242 174-331 (727)
127 1a9n_A U2A', U2A'; complex (nu 98.8 3.5E-09 1.2E-13 92.4 6.0 79 132-214 42-123 (176)
128 1a9n_A U2A', U2A'; complex (nu 98.8 1.8E-09 6.3E-14 94.3 4.1 88 250-345 59-154 (176)
129 2o6r_A Variable lymphocyte rec 98.8 4.4E-08 1.5E-12 85.4 12.9 85 250-342 47-135 (177)
130 1w8a_A SLIT protein; signaling 98.8 3.5E-08 1.2E-12 87.4 11.9 56 156-213 29-87 (192)
131 1w8a_A SLIT protein; signaling 98.8 4E-08 1.4E-12 87.0 11.5 102 111-220 11-117 (192)
132 4b8c_D Glucose-repressible alc 98.8 4.1E-09 1.4E-13 112.7 5.8 153 169-341 213-369 (727)
133 2o6r_A Variable lymphocyte rec 98.7 9.9E-08 3.4E-12 83.1 12.8 124 158-319 9-135 (177)
134 4fdw_A Leucine rich hypothetic 98.7 1.7E-06 5.9E-11 85.6 20.7 206 110-341 137-355 (401)
135 4fdw_A Leucine rich hypothetic 98.6 2.7E-06 9.4E-11 84.1 20.2 205 110-340 159-379 (401)
136 3sb4_A Hypothetical leucine ri 98.6 5.3E-07 1.8E-11 86.8 14.7 189 131-337 100-327 (329)
137 1ds9_A Outer arm dynein; leuci 98.5 1.2E-09 4.2E-14 97.3 -5.6 113 121-239 37-152 (198)
138 1ds9_A Outer arm dynein; leuci 98.5 3.1E-10 1.1E-14 101.2 -10.2 42 171-214 39-80 (198)
139 2r9u_A Variable lymphocyte rec 98.5 5E-07 1.7E-11 78.6 10.5 99 207-318 15-115 (174)
140 3g39_A Variable lymphocyte rec 98.5 7.1E-07 2.4E-11 77.2 10.3 99 207-318 12-112 (170)
141 3g39_A Variable lymphocyte rec 98.4 1.1E-06 3.8E-11 76.0 10.1 14 251-264 98-111 (170)
142 2r9u_A Variable lymphocyte rec 98.4 1.3E-06 4.5E-11 75.8 10.0 14 251-264 101-114 (174)
143 2ifg_A High affinity nerve gro 98.2 3.7E-06 1.2E-10 81.4 8.9 98 160-264 12-112 (347)
144 3e4g_A ATP synthase subunit S, 98.1 7.5E-07 2.6E-11 76.9 2.5 68 250-323 80-154 (176)
145 4fs7_A Uncharacterized protein 98.1 0.00067 2.3E-08 66.7 23.2 119 201-339 250-374 (394)
146 2ifg_A High affinity nerve gro 98.1 9.5E-06 3.3E-10 78.4 9.5 98 114-215 14-114 (347)
147 2ra8_A Uncharacterized protein 97.9 5E-06 1.7E-10 81.0 3.9 9 156-164 139-147 (362)
148 3e4g_A ATP synthase subunit S, 97.9 6.9E-06 2.4E-10 70.8 3.3 18 251-270 135-152 (176)
149 2ra8_A Uncharacterized protein 97.8 1.2E-05 4E-10 78.3 4.4 12 284-295 306-317 (362)
150 4gt6_A Cell surface protein; l 97.6 0.0057 2E-07 59.9 19.6 101 226-342 264-368 (394)
151 3un9_A NLR family member X1; l 97.5 2.1E-06 7.1E-11 84.2 -5.8 34 284-318 210-249 (372)
152 3un9_A NLR family member X1; l 97.4 6.6E-06 2.2E-10 80.6 -3.3 15 285-300 239-253 (372)
153 4fs7_A Uncharacterized protein 97.0 0.027 9.3E-07 55.0 17.4 138 156-317 230-375 (394)
154 4h09_A Hypothetical leucine ri 97.0 0.13 4.3E-06 49.7 21.9 59 250-316 258-318 (379)
155 4gt6_A Cell surface protein; l 96.9 0.014 4.8E-07 57.0 14.1 78 250-338 260-341 (394)
156 4h09_A Hypothetical leucine ri 96.1 0.84 2.9E-05 43.8 21.4 96 226-338 216-317 (379)
157 3rw6_A Nuclear RNA export fact 95.3 0.0072 2.5E-07 55.7 2.5 57 156-215 170-231 (267)
158 3rw6_A Nuclear RNA export fact 95.2 0.0063 2.2E-07 56.1 1.9 41 178-220 168-211 (267)
159 1io0_A Tropomodulin; LRR prote 95.0 0.0037 1.3E-07 54.3 -0.3 12 179-190 64-75 (185)
160 1io0_A Tropomodulin; LRR prote 95.0 0.0034 1.2E-07 54.5 -0.6 54 156-211 65-128 (185)
161 3rfe_A Platelet glycoprotein I 93.1 0.091 3.1E-06 42.5 4.5 45 268-319 18-66 (130)
162 3rfe_A Platelet glycoprotein I 89.0 0.76 2.6E-05 36.9 6.1 50 289-342 12-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 55.3 6.3 0.00022 34.0 2.6 14 201-214 67-80 (197)
164 1pgv_A TMD-1, tropomodulin TMD 52.4 4.5 0.00015 35.0 1.2 10 255-264 157-166 (197)
165 2lz0_A Uncharacterized protein 22.4 1.3E+02 0.0045 22.3 4.9 31 284-316 19-51 (100)
166 3of6_D PRE T-cell antigen rece 20.1 58 0.002 24.5 2.3 35 423-457 31-78 (130)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=5.4e-21 Score=186.99 Aligned_cols=293 Identities=15% Similarity=0.112 Sum_probs=198.4
Q ss_pred CCCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCC
Q 039619 23 RFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVC 102 (459)
Q Consensus 23 ~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l 102 (459)
.+++|++|++.+...... . ....+++|++|.+.++.... + .....+ ++|++|++++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~-~--~~~~~~~L~~L~l~~n~i~~-----------~-----~~~~~l-~~L~~L~L~~n--- 98 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI-Q--GIEYLTNLEYLNLNGNQITD-----------I-----SPLSNL-VKLTNLYIGTN--- 98 (347)
T ss_dssp HHTTCSEEECCSSCCCCC-T--TGGGCTTCCEEECCSSCCCC-----------C-----GGGTTC-TTCCEEECCSS---
T ss_pred hcccccEEEEeCCccccc-h--hhhhcCCccEEEccCCcccc-----------c-----hhhhcC-CcCCEEEccCC---
Confidence 578899999887654322 1 24468889999998774220 0 011233 48889998886
Q ss_pred CCCCccc-------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCcccccc
Q 039619 103 YEPLTIP-------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEG 175 (459)
Q Consensus 103 ~~l~~lp-------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~ 175 (459)
.+..+| |++|++++ +.++.++. ...+++|++|++++|..+..++....+ ++|++|++++| .+..++.
T Consensus 99 -~i~~~~~~~~l~~L~~L~l~~-n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l-~~L~~L~l~~~-~~~~~~~- 172 (347)
T 4fmz_A 99 -KITDISALQNLTNLRELYLNE-DNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNM-TGLNYLTVTES-KVKDVTP- 172 (347)
T ss_dssp -CCCCCGGGTTCTTCSEEECTT-SCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTC-TTCCEEECCSS-CCCCCGG-
T ss_pred -cccCchHHcCCCcCCEEECcC-CcccCchh-hccCCceeEEECCCCCCcccccchhhC-CCCcEEEecCC-CcCCchh-
Confidence 333333 88999977 45667764 555668999999888777777766677 88899998886 4555544
Q ss_pred CCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCC
Q 039619 176 LDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFT 255 (459)
Q Consensus 176 l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~ 255 (459)
+..+++|++|++++| .+..++. +..+++|+.|+++++ .+..++....+++|++|+++++.++... .+..++
T Consensus 173 ~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~~l~ 243 (347)
T 4fmz_A 173 IANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVN-QITDITPVANMTRLNSLKIGNNKITDLS------PLANLS 243 (347)
T ss_dssp GGGCTTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCCCCG------GGTTCT
T ss_pred hccCCCCCEEEccCC-ccccccc-ccCCCccceeecccC-CCCCCchhhcCCcCCEEEccCCccCCCc------chhcCC
Confidence 777888999998887 5556654 677888888888775 4445444445778888888887776544 467888
Q ss_pred ccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCCCCcCCCCC--CCCCc
Q 039619 256 SVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPDNG--LPTSL 333 (459)
Q Consensus 256 ~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~lp~~~--l~~sL 333 (459)
+|++|++++ +.+..++.. ..+++|++|++++ +.++.++.+..+++|++|++++|. +...+... -+++|
T Consensus 244 ~L~~L~l~~---n~l~~~~~~-----~~l~~L~~L~l~~-n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 244 QLTWLEIGT---NQISDINAV-----KDLTKLKMLNVGS-NQISDISVLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNL 313 (347)
T ss_dssp TCCEEECCS---SCCCCCGGG-----TTCTTCCEEECCS-SCCCCCGGGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTC
T ss_pred CCCEEECCC---CccCCChhH-----hcCCCcCEEEccC-CccCCChhhcCCCCCCEEECcCCc-CCCcChhHhhccccC
Confidence 888888888 355555432 2667888888888 577777766778888888888864 44333211 25788
Q ss_pred ceEEeeCCchhHHhhhcCcCCccccccCCCeEEeCce
Q 039619 334 LRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCH 370 (459)
Q Consensus 334 ~~L~i~~c~~L~~~~~~~~~~~~~~i~~i~~l~~~~~ 370 (459)
++|++++|+- .... ....+.++..+.+.++
T Consensus 314 ~~L~L~~n~l-~~~~------~~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 314 TTLFLSQNHI-TDIR------PLASLSKMDSADFANQ 343 (347)
T ss_dssp SEEECCSSSC-CCCG------GGGGCTTCSEESSSCC
T ss_pred CEEEccCCcc-cccc------Chhhhhccceeehhhh
Confidence 8888888862 2211 1233445666666554
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=5.2e-22 Score=214.62 Aligned_cols=330 Identities=12% Similarity=0.017 Sum_probs=195.6
Q ss_pred CCCCCCCeEeccCCCccCcccccCCccCC-ccceeecccccccccc--CCC---CCCCcccCCCCCC-------CCCCCC
Q 039619 22 SRFPKRQRSSQQDLDESEYSEEVEEEEFP-TVQRQARSQETRAADK--GGG---SKGNKTADPGKRS-------NNGPVS 88 (459)
Q Consensus 22 ~~f~~L~~L~l~~~~~~~~~~~~~~~~~p-~L~~L~l~~~~~~~~~--~~~---~~~~~~~~~~~~~-------~~~~lp 88 (459)
..+++|++|++.++........ ....++ +|+.|.+.++...... ... ....+.++..... ....+
T Consensus 340 ~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l- 417 (768)
T 3rgz_A 340 LKMRGLKVLDLSFNEFSGELPE-SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC- 417 (768)
T ss_dssp TTCTTCCEEECCSSEEEECCCT-THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-
T ss_pred hcCCCCCEEeCcCCccCccccH-HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC-
Confidence 3578888888877643211111 122344 7777777766432100 000 0111111111110 01122
Q ss_pred CCcCceEEeCCCCC----CCCCccc-eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeecc-ccccccccceEE
Q 039619 89 VTLKDPEVLDCPVC----YEPLTIP-VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL-RGNLSKALKHLY 162 (459)
Q Consensus 89 ~~L~~L~l~~c~~l----~~l~~lp-L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~-~~~lp~~L~~L~ 162 (459)
++|++|++++|.-. ..+..++ |++|++++|.....+|.....+++|++|+++++.....+|. ...+ ++|++|+
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~ 496 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC-TNLNWIS 496 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEE
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC-CCCCEEE
Confidence 36777777775210 0011122 77788877654446665556667888888877654445552 2556 7888888
Q ss_pred eecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-------------------
Q 039619 163 IISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN------------------- 223 (459)
Q Consensus 163 l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~------------------- 223 (459)
+++|.....+|..++.+++|++|++++|.....+|..+..+++|+.|++++|.....+|..
T Consensus 497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~ 576 (768)
T 3rgz_A 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEE
T ss_pred ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccc
Confidence 8887655567777888888888888887655577777888888888888776433233311
Q ss_pred ----------------------------------------------------CCCCCccEEEEecCcccccccccCCCCC
Q 039619 224 ----------------------------------------------------CFPTNLASVCIDYEKIYKPLILERGPGL 251 (459)
Q Consensus 224 ----------------------------------------------------~~~~~L~~L~l~~~~l~~~~~~~~~~~l 251 (459)
+.+++|+.|++++|++++.+ |. .+
T Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i-p~---~l 652 (768)
T 3rgz_A 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI-PK---EI 652 (768)
T ss_dssp EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC-CG---GG
T ss_pred ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC-CH---HH
Confidence 11356788888888777665 55 67
Q ss_pred CCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCC-ccC-CCCCCCCCCEEeccCCCCCCcCCCCCC
Q 039619 252 HRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLE-RIS-SIENLTSFESLQLCCCPKLQKFPDNGL 329 (459)
Q Consensus 252 ~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l 329 (459)
+.+++|+.|++++ +.-...+|..++ .+++|+.|++++ +++. .+| .+..+++|++|++++|+--..+|..+.
T Consensus 653 ~~l~~L~~L~Ls~--N~l~g~ip~~l~----~L~~L~~LdLs~-N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~ 725 (768)
T 3rgz_A 653 GSMPYLFILNLGH--NDISGSIPDEVG----DLRGLNILDLSS-NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725 (768)
T ss_dssp GGCTTCCEEECCS--SCCCSCCCGGGG----GCTTCCEEECCS-SCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSS
T ss_pred hccccCCEEeCcC--CccCCCCChHHh----CCCCCCEEECCC-CcccCcCChHHhCCCCCCEEECcCCcccccCCCchh
Confidence 8888888888888 344447777663 677888888888 4554 677 778888888888888766667777655
Q ss_pred CCCcceEEeeCCchhHH----hhhcCcCCccccccCCCeE
Q 039619 330 PTSLLRLEIYGCPLIEE----RFEKDKGQYWSLIADIPCV 365 (459)
Q Consensus 330 ~~sL~~L~i~~c~~L~~----~~~~~~~~~~~~i~~i~~l 365 (459)
+.++....+.++|.|-. .|....+++|++++|++.+
T Consensus 726 ~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 726 FETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp GGGSCGGGGCSCTEEESTTSCCCCSCC-------------
T ss_pred hccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCcccc
Confidence 56666666777664432 5777788899999998865
No 3
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=2.3e-19 Score=183.17 Aligned_cols=284 Identities=17% Similarity=0.179 Sum_probs=211.3
Q ss_pred CCCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCC
Q 039619 23 RFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVC 102 (459)
Q Consensus 23 ~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l 102 (459)
-.+++++|++.+... ..........+++|++|.+.++... .+... ....++ +|++|+++++
T Consensus 30 ~~~~l~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~i~-----------~~~~~---~~~~l~-~L~~L~L~~n--- 90 (477)
T 2id5_A 30 IPTETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVS-----------AVEPG---AFNNLF-NLRTLGLRSN--- 90 (477)
T ss_dssp CCTTCSEEECCSSCC-CEECTTTTTTCTTCCEEECTTSCCC-----------EECTT---TTTTCT-TCCEEECCSS---
T ss_pred CCCCCcEEECCCCcc-ceECHhHccCCCCCCEEECCCCccC-----------EeChh---hhhCCc-cCCEEECCCC---
Confidence 356899999987643 3333334567899999999977422 11111 112344 8999999985
Q ss_pred CCCCccc---------eeEEEEecCCCCccc-cCCccccccCcEEEeecCCCceeec--cccccccccceEEeecccCCc
Q 039619 103 YEPLTIP---------VYQLQIIPCPSLTSL-WSKSELPATLENIYVDRCSKLAFLS--LRGNLSKALKHLYIISCSNLE 170 (459)
Q Consensus 103 ~~l~~lp---------L~~L~l~~c~~l~~l-p~~~~~~~~L~~L~l~~c~~l~~l~--~~~~lp~~L~~L~l~~c~~l~ 170 (459)
.+..+| |++|+++++ .++.+ +.....+++|++|+++++ .+..++ ....+ ++|++|+++++ .++
T Consensus 91 -~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l-~~L~~L~l~~n-~l~ 165 (477)
T 2id5_A 91 -RLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGL-NSLEQLTLEKC-NLT 165 (477)
T ss_dssp -CCCSCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTC-TTCCEEEEESC-CCS
T ss_pred -cCCccCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCC-ccceeChhhccCC-CCCCEEECCCC-cCc
Confidence 444444 999999885 45554 434566679999999985 566664 33567 89999999996 566
Q ss_pred ccc-ccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccCC
Q 039619 171 SIA-EGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERG 248 (459)
Q Consensus 171 ~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~ 248 (459)
.++ ..+..+++|+.|+++++......+..+..+++|+.|++++|+.+..++.. ....+|++|+++++.++... ..
T Consensus 166 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~-- 242 (477)
T 2id5_A 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP-YL-- 242 (477)
T ss_dssp SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC-HH--
T ss_pred ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC-HH--
Confidence 665 45788999999999998443333457889999999999999988888765 33569999999998887433 23
Q ss_pred CCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCC
Q 039619 249 PGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPD 326 (459)
Q Consensus 249 ~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~ 326 (459)
.+..+++|+.|++++ +.+..++... ...+++|++|++++ +.++.++ .+..+++|++|++++| .++.++.
T Consensus 243 -~~~~l~~L~~L~Ls~---n~l~~~~~~~---~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 313 (477)
T 2id5_A 243 -AVRHLVYLRFLNLSY---NPISTIEGSM---LHELLRLQEIQLVG-GQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEE 313 (477)
T ss_dssp -HHTTCTTCCEEECCS---SCCCEECTTS---CTTCTTCCEEECCS-SCCSEECTTTBTTCTTCCEEECCSS-CCSCCCG
T ss_pred -HhcCccccCeeECCC---CcCCccChhh---ccccccCCEEECCC-CccceECHHHhcCcccCCEEECCCC-cCceeCH
Confidence 578899999999998 4566666532 13678999999999 6788775 7889999999999995 7888886
Q ss_pred CCC--CCCcceEEeeCCc
Q 039619 327 NGL--PTSLLRLEIYGCP 342 (459)
Q Consensus 327 ~~l--~~sL~~L~i~~c~ 342 (459)
..+ +++|++|++++++
T Consensus 314 ~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 314 SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp GGBSCGGGCCEEECCSSC
T ss_pred hHcCCCcccCEEEccCCC
Confidence 433 6899999999875
No 4
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=3.1e-20 Score=181.64 Aligned_cols=208 Identities=18% Similarity=0.167 Sum_probs=85.8
Q ss_pred eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeecc
Q 039619 110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFI 189 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 189 (459)
|++|++++|..+..++ ....+++|++|++++| .+..++....+ ++|++|++++| .+..++. +..+++|+.|++++
T Consensus 134 L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~-~~~~~~~~~~l-~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 134 MYSLNLGANHNLSDLS-PLSNMTGLNYLTVTES-KVKDVTPIANL-TDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYV 208 (347)
T ss_dssp CCEEECTTCTTCCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGC-TTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCS
T ss_pred eeEEECCCCCCccccc-chhhCCCCcEEEecCC-CcCCchhhccC-CCCCEEEccCC-ccccccc-ccCCCccceeeccc
Confidence 4555554444444333 2233334555555443 23333323333 44555555443 2333332 34444555555544
Q ss_pred ccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCC
Q 039619 190 CQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCG 269 (459)
Q Consensus 190 c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~ 269 (459)
+ .+..++. +..+++|++|++++| .+..++....+++|++|+++++.+.... .+..+++|++|++++ | .
T Consensus 209 n-~l~~~~~-~~~~~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~--n-~ 276 (347)
T 4fmz_A 209 N-QITDITP-VANMTRLNSLKIGNN-KITDLSPLANLSQLTWLEIGTNQISDIN------AVKDLTKLKMLNVGS--N-Q 276 (347)
T ss_dssp S-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCS--S-C
T ss_pred C-CCCCCch-hhcCCcCCEEEccCC-ccCCCcchhcCCCCCEEECCCCccCCCh------hHhcCCCcCEEEccC--C-c
Confidence 4 2222222 344445555555443 2333332233444555555444443322 334444555555544 1 3
Q ss_pred ceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEEeeCC
Q 039619 270 VVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGC 341 (459)
Q Consensus 270 l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c 341 (459)
+..++.. ..+++|++|++++| .+...+ .+..+++|++|++++|+ ++.++....+++|++|++++|
T Consensus 277 l~~~~~~-----~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 277 ISDISVL-----NNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQ 343 (347)
T ss_dssp CCCCGGG-----GGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC
T ss_pred cCCChhh-----cCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhhh
Confidence 3333211 13344555555542 333322 33444455555554432 333322112344555554444
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=8.3e-20 Score=177.37 Aligned_cols=214 Identities=23% Similarity=0.296 Sum_probs=153.8
Q ss_pred eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeecc-ccccccccceEEeecccCCccccccCCCCCcccEEeec
Q 039619 110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL-RGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIF 188 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~-~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 188 (459)
+++|++++ ..++.+|.....+++|++|+++++ .+..+|. .+.+ ++|++|+++++ .+..+|..+..+++|++|+++
T Consensus 83 l~~L~L~~-n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l-~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 83 RVALELRS-VPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQF-AGLETLTLARN-PLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp CCEEEEES-SCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGG-TTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEE
T ss_pred eeEEEccC-CCchhcChhhhhCCCCCEEECCCC-CccchhHHHhcc-CCCCEEECCCC-ccccCcHHHhcCcCCCEEECC
Confidence 55666655 445566655555668888888774 4556663 3566 78888888875 556777778888888888888
Q ss_pred cccCcccCcccCCC---------CCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCccC
Q 039619 189 ICQNLKALPNGLRN---------LTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVR 258 (459)
Q Consensus 189 ~c~~l~~lp~~l~~---------l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~ 258 (459)
+|..+..+|..+.. +++|++|++++| .++.+|.. +.+++|++|+++++.+... +. .+..+++|+
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l--~~---~l~~l~~L~ 232 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSAL--GP---AIHHLPKLE 232 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCC--CG---GGGGCTTCC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcC--ch---hhccCCCCC
Confidence 87777777766543 778888888775 45566654 4467888888888776643 22 567888888
Q ss_pred EEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCC-CCCCCcceE
Q 039619 259 LLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCPKLQKFPDN-GLPTSLLRL 336 (459)
Q Consensus 259 ~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~-~l~~sL~~L 336 (459)
+|++++ |.....+|..++ .+++|++|++++|+..+.+| .+..+++|++|++++|+.++.+|.. +-+++|+.+
T Consensus 233 ~L~Ls~--n~~~~~~p~~~~----~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 233 ELDLRG--CTALRNYPPIFG----GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306 (328)
T ss_dssp EEECTT--CTTCCBCCCCTT----CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred EEECcC--CcchhhhHHHhc----CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence 888888 677777777653 67788888888888888888 7888888888888888888888862 125667776
Q ss_pred Eee
Q 039619 337 EIY 339 (459)
Q Consensus 337 ~i~ 339 (459)
++.
T Consensus 307 ~l~ 309 (328)
T 4fcg_A 307 LVP 309 (328)
T ss_dssp ECC
T ss_pred eCC
Confidence 664
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=2.5e-20 Score=201.41 Aligned_cols=176 Identities=19% Similarity=0.173 Sum_probs=82.2
Q ss_pred cccceEEeecccCCccccccCCCCC-cccEEeeccccCcccCcccCCC--CCCccEEeeccCCCCccccCC-CCCCCccE
Q 039619 156 KALKHLYIISCSNLESIAEGLDDNT-SLETMEIFICQNLKALPNGLRN--LTSLQYLLIQDCPTIGSFTAN-CFPTNLAS 231 (459)
Q Consensus 156 ~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~c~~l~~lp~~l~~--l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~ 231 (459)
++|++|++++|.....+|..+..++ +|++|++++|.....+|..+.. +++|++|++++|.....+|.. ..+++|++
T Consensus 343 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 422 (768)
T 3rgz_A 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422 (768)
T ss_dssp TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCE
T ss_pred CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCE
Confidence 4444444444322223333333333 4444444443222223333322 444555555444322233322 33455555
Q ss_pred EEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCC-ccC-CCCCCCC
Q 039619 232 VCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLE-RIS-SIENLTS 309 (459)
Q Consensus 232 L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~-~l~~l~~ 309 (459)
|+++++.+.+.. +. .+..+++|+.|++++ |.-...+|..+ ..+++|++|+++++ .+. .+| .+..+++
T Consensus 423 L~Ls~N~l~~~~-p~---~l~~l~~L~~L~L~~--n~l~~~~p~~~----~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~ 491 (768)
T 3rgz_A 423 LHLSFNYLSGTI-PS---SLGSLSKLRDLKLWL--NMLEGEIPQEL----MYVKTLETLILDFN-DLTGEIPSGLSNCTN 491 (768)
T ss_dssp EECCSSEEESCC-CG---GGGGCTTCCEEECCS--SCCCSCCCGGG----GGCTTCCEEECCSS-CCCSCCCGGGGGCTT
T ss_pred EECcCCcccCcc-cH---HHhcCCCCCEEECCC--CcccCcCCHHH----cCCCCceEEEecCC-cccCcCCHHHhcCCC
Confidence 555555554333 33 455556666666655 33333444433 24556666666663 333 445 5566666
Q ss_pred CCEEeccCCCCCCcCCCC-CCCCCcceEEeeCCc
Q 039619 310 FESLQLCCCPKLQKFPDN-GLPTSLLRLEIYGCP 342 (459)
Q Consensus 310 L~~L~l~~c~~l~~lp~~-~l~~sL~~L~i~~c~ 342 (459)
|++|++++|.-...+|.. +-+++|++|++++|.
T Consensus 492 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred CCEEEccCCccCCcCChHHhcCCCCCEEECCCCc
Confidence 666666665433344431 124566666666664
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.6e-19 Score=175.38 Aligned_cols=210 Identities=19% Similarity=0.250 Sum_probs=177.8
Q ss_pred CCcCceEEeCCCCCCCCCccc--------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeec-cccccccccc
Q 039619 89 VTLKDPEVLDCPVCYEPLTIP--------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLS-LRGNLSKALK 159 (459)
Q Consensus 89 ~~L~~L~l~~c~~l~~l~~lp--------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~-~~~~lp~~L~ 159 (459)
.++++|+++++ .+..+| |++|++++ +.++.+|.....+++|++|+++++ .+..+| ..+.+ ++|+
T Consensus 81 ~~l~~L~L~~n----~l~~lp~~l~~l~~L~~L~L~~-n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l-~~L~ 153 (328)
T 4fcg_A 81 PGRVALELRSV----PLPQFPDQAFRLSHLQHMTIDA-AGLMELPDTMQQFAGLETLTLARN-PLRALPASIASL-NRLR 153 (328)
T ss_dssp TTCCEEEEESS----CCSSCCSCGGGGTTCSEEEEES-SCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGC-TTCC
T ss_pred cceeEEEccCC----CchhcChhhhhCCCCCEEECCC-CCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcC-cCCC
Confidence 48899999994 566666 99999988 456688877777789999999995 666777 33677 8999
Q ss_pred eEEeecccCCccccccCCC---------CCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCc
Q 039619 160 HLYIISCSNLESIAEGLDD---------NTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNL 229 (459)
Q Consensus 160 ~L~l~~c~~l~~lp~~l~~---------l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L 229 (459)
+|++++|..+..+|..+.. +++|++|++++| .+..+|..+..+++|++|++++|. +..+|.. ..+++|
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L 231 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKL 231 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTC
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCC
Confidence 9999999888888887764 999999999998 677899899999999999999864 5566654 557899
Q ss_pred cEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCC
Q 039619 230 ASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLT 308 (459)
Q Consensus 230 ~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~ 308 (459)
++|+++++.+.... +. .+..+++|++|++++ |.....+|..+ ..+++|++|++++|+.++.+| .+.+++
T Consensus 232 ~~L~Ls~n~~~~~~-p~---~~~~l~~L~~L~L~~--n~~~~~~p~~~----~~l~~L~~L~L~~n~~~~~iP~~l~~L~ 301 (328)
T 4fcg_A 232 EELDLRGCTALRNY-PP---IFGGRAPLKRLILKD--CSNLLTLPLDI----HRLTQLEKLDLRGCVNLSRLPSLIAQLP 301 (328)
T ss_dssp CEEECTTCTTCCBC-CC---CTTCCCCCCEEECTT--CTTCCBCCTTG----GGCTTCCEEECTTCTTCCCCCGGGGGSC
T ss_pred CEEECcCCcchhhh-HH---HhcCCCCCCEEECCC--CCchhhcchhh----hcCCCCCEEeCCCCCchhhccHHHhhcc
Confidence 99999997776555 55 788999999999999 78888999876 378999999999999999999 999999
Q ss_pred CCCEEeccC
Q 039619 309 SFESLQLCC 317 (459)
Q Consensus 309 ~L~~L~l~~ 317 (459)
+|+.+++..
T Consensus 302 ~L~~l~l~~ 310 (328)
T 4fcg_A 302 ANCIILVPP 310 (328)
T ss_dssp TTCEEECCG
T ss_pred CceEEeCCH
Confidence 999999875
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=5.8e-19 Score=179.01 Aligned_cols=286 Identities=15% Similarity=0.072 Sum_probs=140.7
Q ss_pred CCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCC-
Q 039619 24 FPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVC- 102 (459)
Q Consensus 24 f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l- 102 (459)
.++|++|++.+... ..........+++|+.|.+.++.... .++... ...+ ++|++|+++++.-.
T Consensus 29 ~~~l~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~L~~n~~~~----------~i~~~~---~~~l-~~L~~L~Ls~n~l~~ 93 (455)
T 3v47_A 29 PAHVNYVDLSLNSI-AELNETSFSRLQDLQFLKVEQQTPGL----------VIRNNT---FRGL-SSLIILKLDYNQFLQ 93 (455)
T ss_dssp CTTCCEEECCSSCC-CEECTTTTSSCTTCCEEECCCCSTTC----------EECTTT---TTTC-TTCCEEECTTCTTCE
T ss_pred CCccCEEEecCCcc-CcCChhHhccCccccEEECcCCcccc----------eECccc---cccc-ccCCEEeCCCCccCc
Confidence 36799999987644 33333345578899999998774320 111111 1223 37888888775210
Q ss_pred ---CCCCccc-eeEEEEecCCCCcc-ccCC--ccccccCcEEEeecCCCceee-cc--ccccccccceEEeecccCCccc
Q 039619 103 ---YEPLTIP-VYQLQIIPCPSLTS-LWSK--SELPATLENIYVDRCSKLAFL-SL--RGNLSKALKHLYIISCSNLESI 172 (459)
Q Consensus 103 ---~~l~~lp-L~~L~l~~c~~l~~-lp~~--~~~~~~L~~L~l~~c~~l~~l-~~--~~~lp~~L~~L~l~~c~~l~~l 172 (459)
..+..++ |++|++++|. ++. ++.. ...+++|++|+++++ .+..+ |. ...+ ++|++|+++++......
T Consensus 94 ~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 94 LETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNM-RRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGC-TTCCEEECTTCCBSCCC
T ss_pred cChhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCC-ccCccCcccccCCC-CcccEEeCCCCcccccC
Confidence 0112222 8888887753 432 3322 344567888888775 34444 32 3456 77888888775432222
Q ss_pred cccCCCC--CcccEEeeccccCcccCcc---------cCCCCCCccEEeeccCCC-------------------------
Q 039619 173 AEGLDDN--TSLETMEIFICQNLKALPN---------GLRNLTSLQYLLIQDCPT------------------------- 216 (459)
Q Consensus 173 p~~l~~l--~~L~~L~l~~c~~l~~lp~---------~l~~l~~L~~L~l~~c~~------------------------- 216 (459)
+..+..+ .+|+.|+++++. +..++. .+..+++|++|++++|..
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred hhhhhccccccccccccccCc-ccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 3333333 334444444331 111111 011223333333333311
Q ss_pred --Ccc------ccC---C----CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceec-CCCCCCC
Q 039619 217 --IGS------FTA---N----CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSF-PPEKDTG 280 (459)
Q Consensus 217 --l~~------lp~---~----~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l-~~~~~~~ 280 (459)
... ++. . ...++|++|+++++.+.... +. .+..+++|++|++++ +.+..+ |..+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~---~~~~l~~L~~L~Ls~---n~l~~~~~~~~--- 319 (455)
T 3v47_A 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL-KS---VFSHFTDLEQLTLAQ---NEINKIDDNAF--- 319 (455)
T ss_dssp TTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC-TT---TTTTCTTCCEEECTT---SCCCEECTTTT---
T ss_pred cccccccchhhhccCcccccccccccCceEEEecCccccccc-hh---hcccCCCCCEEECCC---CcccccChhHh---
Confidence 100 000 0 01245666666665554433 33 455666666666665 233333 2222
Q ss_pred ccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCC
Q 039619 281 KALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGC 341 (459)
Q Consensus 281 ~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c 341 (459)
..+++|++|++++ +.++.++ .+..+++|++|++++| .++.++...+ +++|++|+++++
T Consensus 320 -~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 320 -WGLTHLLKLNLSQ-NFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN 381 (455)
T ss_dssp -TTCTTCCEEECCS-SCCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred -cCcccCCEEECCC-CccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC
Confidence 1445666666666 4555553 4555666666666664 3444422212 456666666665
No 9
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=7.4e-19 Score=179.00 Aligned_cols=98 Identities=22% Similarity=0.194 Sum_probs=39.4
Q ss_pred cccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEe
Q 039619 156 KALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCID 235 (459)
Q Consensus 156 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~ 235 (459)
++|++|+++++ .+..++ .+..+++|++|++++| .+..++. ++.+++|++|++++| .++.++....+++|++|+++
T Consensus 177 ~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 177 TTLERLDISSN-KVSDIS-VLAKLTNLESLIATNN-QISDITP-LGILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLA 251 (466)
T ss_dssp TTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECC
T ss_pred CCCCEEECcCC-cCCCCh-hhccCCCCCEEEecCC-ccccccc-ccccCCCCEEECCCC-CcccchhhhcCCCCCEEECC
Confidence 44444444443 233332 2344444444444444 2222221 333444444444443 23333222234444444444
Q ss_pred cCcccccccccCCCCCCCCCccCEEEEeC
Q 039619 236 YEKIYKPLILERGPGLHRFTSVRLLTLFG 264 (459)
Q Consensus 236 ~~~l~~~~~~~~~~~l~~l~~L~~L~l~~ 264 (459)
++.+.... .+..+++|++|++++
T Consensus 252 ~n~l~~~~------~~~~l~~L~~L~l~~ 274 (466)
T 1o6v_A 252 NNQISNLA------PLSGLTKLTELKLGA 274 (466)
T ss_dssp SSCCCCCG------GGTTCTTCSEEECCS
T ss_pred CCccccch------hhhcCCCCCEEECCC
Confidence 44443322 234444444444444
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.81 E-value=6.2e-19 Score=186.44 Aligned_cols=319 Identities=12% Similarity=0.039 Sum_probs=219.4
Q ss_pred CCCCCCCCeEeccCCCccCc-----c-----------cccCCc--cCCccceeeccccccccccCCCCCCCcccCCCCCC
Q 039619 21 SSRFPKRQRSSQQDLDESEY-----S-----------EEVEEE--EFPTVQRQARSQETRAADKGGGSKGNKTADPGKRS 82 (459)
Q Consensus 21 ~~~f~~L~~L~l~~~~~~~~-----~-----------~~~~~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (459)
...+++|++|++.+..-... | ...... .+++|+.|.+.+|.... .++ .
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~----------~~p----~ 267 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT----------KLP----T 267 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS----------SCC----T
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc----------cCh----H
Confidence 34689999999988763321 1 223344 78999999999885331 011 1
Q ss_pred CCCCCCCCcCceEEeCCCCCCCCCc--c-------------c-eeEEEEecCCCCccccC--CccccccCcEEEeecCCC
Q 039619 83 NNGPVSVTLKDPEVLDCPVCYEPLT--I-------------P-VYQLQIIPCPSLTSLWS--KSELPATLENIYVDRCSK 144 (459)
Q Consensus 83 ~~~~lp~~L~~L~l~~c~~l~~l~~--l-------------p-L~~L~l~~c~~l~~lp~--~~~~~~~L~~L~l~~c~~ 144 (459)
..+.++ +|++|++++|. .+.. + + |++|++++| .++.+|. ....+++|++|+++++ .
T Consensus 268 ~l~~l~-~L~~L~Ls~n~---~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N-~ 341 (636)
T 4eco_A 268 FLKALP-EMQLINVACNR---GISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYN-Q 341 (636)
T ss_dssp TTTTCS-SCCEEECTTCT---TSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSC-C
T ss_pred HHhcCC-CCCEEECcCCC---CCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCC-c
Confidence 223444 89999999962 1332 2 4 899999884 5668886 5667779999999986 4
Q ss_pred ce-eeccccccccccceEEeecccCCccccccCCCCCc-ccEEeeccccCcccCcccCCCCC--CccEEeeccCCCCccc
Q 039619 145 LA-FLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTS-LETMEIFICQNLKALPNGLRNLT--SLQYLLIQDCPTIGSF 220 (459)
Q Consensus 145 l~-~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~-L~~L~l~~c~~l~~lp~~l~~l~--~L~~L~l~~c~~l~~l 220 (459)
+. .+|..+.+ ++|++|+++++ .+..+|..+..+++ |++|+++++ .+..+|..+..++ +|+.|++++|......
T Consensus 342 l~g~ip~~~~l-~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~ 418 (636)
T 4eco_A 342 LEGKLPAFGSE-IKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVD 418 (636)
T ss_dssp CEEECCCCEEE-EEESEEECCSS-EEEECCTTSEEECTTCCEEECCSS-CCSSCCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred CccchhhhCCC-CCCCEEECCCC-ccccccHhhhhhcccCcEEEccCC-cCcccchhhhhcccCccCEEECcCCcCCCcc
Confidence 55 88855677 89999999986 56688989999999 999999998 4668888776654 8999999987644434
Q ss_pred cCC-C-------CCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCc----cCCCCcc
Q 039619 221 TAN-C-------FPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGK----ALPASLK 288 (459)
Q Consensus 221 p~~-~-------~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~----~~~~~L~ 288 (459)
|.. . ..++|++|+++++.+.... .. .+..+++|++|++++ +.+..+|....... ..+++|+
T Consensus 419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp-~~---~~~~l~~L~~L~Ls~---N~l~~i~~~~~~~~~~~~~~l~~L~ 491 (636)
T 4eco_A 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFP-KE---LFSTGSPLSSINLMG---NMLTEIPKNSLKDENENFKNTYLLT 491 (636)
T ss_dssp TCSSCTTCSSCCCCCCEEEEECCSSCCCSCC-TH---HHHTTCCCSEEECCS---SCCSBCCSSSSEETTEECTTGGGCC
T ss_pred hhhhcccccccccCCCCCEEECcCCccCcCC-HH---HHccCCCCCEEECCC---CCCCCcCHHHhccccccccccCCcc
Confidence 332 2 3568999999998877432 21 345689999999998 46668887541000 0012899
Q ss_pred eEEeecCCCCCccC-CCC--CCCCCCEEeccCCCCCCcCCCC-CCCCCcceEEeeCCchhHHhh-hcCcCCccccccCCC
Q 039619 289 HLSIWNFPNLERIS-SIE--NLTSFESLQLCCCPKLQKFPDN-GLPTSLLRLEIYGCPLIEERF-EKDKGQYWSLIADIP 363 (459)
Q Consensus 289 ~L~l~~c~~l~~l~-~l~--~l~~L~~L~l~~c~~l~~lp~~-~l~~sL~~L~i~~c~~L~~~~-~~~~~~~~~~i~~i~ 363 (459)
+|++++ +.++.+| .+. .+++|++|++++| .++.+|.. .-+++|++|+++++..+..-. ..........+.++.
T Consensus 492 ~L~Ls~-N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~ 569 (636)
T 4eco_A 492 SIDLRF-NKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569 (636)
T ss_dssp EEECCS-SCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred EEECcC-CcCCccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCC
Confidence 999998 6888888 665 8999999999985 56668763 227899999997654221100 000111233455666
Q ss_pred eEEeCcee
Q 039619 364 CVRIDCHY 371 (459)
Q Consensus 364 ~l~~~~~~ 371 (459)
.+.+.++.
T Consensus 570 ~L~Ls~N~ 577 (636)
T 4eco_A 570 QLQIGSND 577 (636)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 67666553
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.81 E-value=9e-19 Score=185.19 Aligned_cols=295 Identities=13% Similarity=0.128 Sum_probs=162.3
Q ss_pred CCCCCCeEeccCCCccCcccccCCccCCccceeeccccccccc----cCCC-------CCCCcccCCCCCC-----C---
Q 039619 23 RFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAAD----KGGG-------SKGNKTADPGKRS-----N--- 83 (459)
Q Consensus 23 ~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~----~~~~-------~~~~~~~~~~~~~-----~--- 83 (459)
.+++|++|++.++....... .....+++|+.|.+.++..+.. ..++ ....+.++..... .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHH
T ss_pred ccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhh
Confidence 57889999998875443322 3345688999999988752210 0000 0111111111110 0
Q ss_pred CCCCCCCcCceEEeCCCCCCCCC-ccc-------eeEEEEecCCCCccccCCcccccc-CcEEEeecCCCceeeccc-cc
Q 039619 84 NGPVSVTLKDPEVLDCPVCYEPL-TIP-------VYQLQIIPCPSLTSLWSKSELPAT-LENIYVDRCSKLAFLSLR-GN 153 (459)
Q Consensus 84 ~~~lp~~L~~L~l~~c~~l~~l~-~lp-------L~~L~l~~c~~l~~lp~~~~~~~~-L~~L~l~~c~~l~~l~~~-~~ 153 (459)
.+.++ +|++|+++++ .+. .+| |++|++++ +.++.+|.....+++ |++|+++++ .++.+|.. ..
T Consensus 326 l~~l~-~L~~L~L~~N----~l~g~ip~~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~~L~~L~Ls~N-~l~~lp~~~~~ 398 (636)
T 4eco_A 326 LQKMK-KLGMLECLYN----QLEGKLPAFGSEIKLASLNLAY-NQITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDA 398 (636)
T ss_dssp HTTCT-TCCEEECCSC----CCEEECCCCEEEEEESEEECCS-SEEEECCTTSEEECTTCCEEECCSS-CCSSCCSCCCT
T ss_pred hccCC-CCCEEeCcCC----cCccchhhhCCCCCCCEEECCC-CccccccHhhhhhcccCcEEEccCC-cCcccchhhhh
Confidence 11222 5666666664 233 333 66666665 345566654444445 666666664 34455522 11
Q ss_pred --cccccceEEeecccCCccccccCC-------CCCcccEEeeccccCcccCcccC-CCCCCccEEeeccCCCCccccCC
Q 039619 154 --LSKALKHLYIISCSNLESIAEGLD-------DNTSLETMEIFICQNLKALPNGL-RNLTSLQYLLIQDCPTIGSFTAN 223 (459)
Q Consensus 154 --lp~~L~~L~l~~c~~l~~lp~~l~-------~l~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~~l~~lp~~ 223 (459)
+ ++|++|+++++.....+|..+. .+++|++|++++| .+..+|..+ ..+++|++|++++| .+..+|..
T Consensus 399 ~~l-~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~ 475 (636)
T 4eco_A 399 KSV-SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGN-MLTEIPKN 475 (636)
T ss_dssp TCS-SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSS
T ss_pred ccc-CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCC-CCCCcCHH
Confidence 2 3566677766544444455555 5566777777665 444555443 34667777777664 34455543
Q ss_pred CC--CC-------CccEEEEecCcccccccccCCCCCC--CCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEe
Q 039619 224 CF--PT-------NLASVCIDYEKIYKPLILERGPGLH--RFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSI 292 (459)
Q Consensus 224 ~~--~~-------~L~~L~l~~~~l~~~~~~~~~~~l~--~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l 292 (459)
.+ .. +|++|+++++.++. + +. .+. .+++|++|++++ +.+..+|... ..+++|+.|++
T Consensus 476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l-p~---~~~~~~l~~L~~L~Ls~---N~l~~ip~~~----~~l~~L~~L~L 543 (636)
T 4eco_A 476 SLKDENENFKNTYLLTSIDLRFNKLTK-L-SD---DFRATTLPYLVGIDLSY---NSFSKFPTQP----LNSSTLKGFGI 543 (636)
T ss_dssp SSEETTEECTTGGGCCEEECCSSCCCB-C-CG---GGSTTTCTTCCEEECCS---SCCSSCCCGG----GGCSSCCEEEC
T ss_pred HhccccccccccCCccEEECcCCcCCc-c-Ch---hhhhccCCCcCEEECCC---CCCCCcChhh----hcCCCCCEEEC
Confidence 22 11 67777777766652 2 22 333 677777777776 3444566654 25667777777
Q ss_pred ec------CCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEEeeCCc
Q 039619 293 WN------FPNLERIS-SIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCP 342 (459)
Q Consensus 293 ~~------c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c~ 342 (459)
++ +.-...+| .+..+++|++|++++| .++.+|.. +.++|+.|++++|+
T Consensus 544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~-~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEK-ITPNISVLDIKDNP 598 (636)
T ss_dssp CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCTTCCEEECCSCT
T ss_pred CCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCccCHh-HhCcCCEEECcCCC
Confidence 43 22234555 6666777777777764 34666653 34677777777765
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=1.1e-18 Score=188.85 Aligned_cols=322 Identities=13% Similarity=0.016 Sum_probs=216.7
Q ss_pred CCCCCCCCeEeccCCCccCc-----c-----------cccCCc--cCCccceeeccccccccccCCCCCCCcccCCCCCC
Q 039619 21 SSRFPKRQRSSQQDLDESEY-----S-----------EEVEEE--EFPTVQRQARSQETRAADKGGGSKGNKTADPGKRS 82 (459)
Q Consensus 21 ~~~f~~L~~L~l~~~~~~~~-----~-----------~~~~~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (459)
...+++|++|++.+..-... | .+.... .+++|+.|.+.+|.... .++ .
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~----------~iP----~ 509 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT----------QLP----D 509 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC----------SCC----G
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc----------cCh----H
Confidence 34688999999988754331 0 122333 68999999998875321 000 1
Q ss_pred CCCCCCCCcCceEEeCCCCCC-------------CCCccc-eeEEEEecCCCCccccC--CccccccCcEEEeecCCCce
Q 039619 83 NNGPVSVTLKDPEVLDCPVCY-------------EPLTIP-VYQLQIIPCPSLTSLWS--KSELPATLENIYVDRCSKLA 146 (459)
Q Consensus 83 ~~~~lp~~L~~L~l~~c~~l~-------------~l~~lp-L~~L~l~~c~~l~~lp~--~~~~~~~L~~L~l~~c~~l~ 146 (459)
..+.++ +|++|+++++..+. .+..+| |++|++++ +.++.+|. ....+++|++|+++++ .+.
T Consensus 510 ~l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~-N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~ 586 (876)
T 4ecn_A 510 FLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY-NNLEEFPASASLQKMVKLGLLDCVHN-KVR 586 (876)
T ss_dssp GGGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS-SCCCBCCCHHHHTTCTTCCEEECTTS-CCC
T ss_pred HHhCCC-CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC-CcCCccCChhhhhcCCCCCEEECCCC-Ccc
Confidence 122344 89999999963111 111233 89999988 45668886 5666779999999985 566
Q ss_pred eeccccccccccceEEeecccCCccccccCCCCCc-ccEEeeccccCcccCcccCCCCCC--ccEEeeccCCCCccccCC
Q 039619 147 FLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTS-LETMEIFICQNLKALPNGLRNLTS--LQYLLIQDCPTIGSFTAN 223 (459)
Q Consensus 147 ~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~-L~~L~l~~c~~l~~lp~~l~~l~~--L~~L~l~~c~~l~~lp~~ 223 (459)
.+|..+.+ ++|++|+++++ .+..+|..+..+++ |+.|++++| .+..+|..+..++. |+.|++++|.....+|..
T Consensus 587 ~lp~~~~L-~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N-~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l 663 (876)
T 4ecn_A 587 HLEAFGTN-VKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663 (876)
T ss_dssp BCCCCCTT-SEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSS-CCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred cchhhcCC-CcceEEECcCC-ccccchHHHhhccccCCEEECcCC-CCCcCchhhhccccCCCCEEECcCCcCCCccccc
Confidence 88866778 89999999986 46688988999999 999999998 46688887766654 999999987543333321
Q ss_pred ----C--CCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCc----cCCCCcceEEee
Q 039619 224 ----C--FPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGK----ALPASLKHLSIW 293 (459)
Q Consensus 224 ----~--~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~----~~~~~L~~L~l~ 293 (459)
. ..++|+.|+++++.+... +. +.+..+++|+.|++++ +.+..+|....... ..+++|+.|+++
T Consensus 664 ~~~l~~~~~~~L~~L~Ls~N~L~~l--p~--~~~~~l~~L~~L~Ls~---N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls 736 (876)
T 4ecn_A 664 SCSMDDYKGINASTVTLSYNEIQKF--PT--ELFATGSPISTIILSN---NLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736 (876)
T ss_dssp SSCTTTCCCCCEEEEECCSSCCCSC--CH--HHHHTTCCCSEEECCS---CCCSCCCTTSSSCTTSCCTTGGGCCEEECC
T ss_pred hhhhccccCCCcCEEEccCCcCCcc--CH--HHHccCCCCCEEECCC---CcCCccChHHhccccccccccCCccEEECC
Confidence 1 245899999999887733 22 1334789999999998 46668887542000 011289999999
Q ss_pred cCCCCCccC-CCC--CCCCCCEEeccCCCCCCcCCCC-CCCCCcceEEeeCCchhHHhh-hcCcCCccccccCCCeEEeC
Q 039619 294 NFPNLERIS-SIE--NLTSFESLQLCCCPKLQKFPDN-GLPTSLLRLEIYGCPLIEERF-EKDKGQYWSLIADIPCVRID 368 (459)
Q Consensus 294 ~c~~l~~l~-~l~--~l~~L~~L~l~~c~~l~~lp~~-~l~~sL~~L~i~~c~~L~~~~-~~~~~~~~~~i~~i~~l~~~ 368 (459)
+ +.++.+| .+. .+++|+.|++++| .+..+|.. .-+++|+.|++++++.+...- .......+..+.++..+.+.
T Consensus 737 ~-N~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 737 F-NKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814 (876)
T ss_dssp S-SCCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred C-CCCccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECC
Confidence 8 6888888 665 8999999999985 66678753 226899999998865222110 00011123345566666666
Q ss_pred cee
Q 039619 369 CHY 371 (459)
Q Consensus 369 ~~~ 371 (459)
+|.
T Consensus 815 ~N~ 817 (876)
T 4ecn_A 815 SND 817 (876)
T ss_dssp SSC
T ss_pred CCC
Confidence 553
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=3.7e-18 Score=169.73 Aligned_cols=297 Identities=12% Similarity=0.017 Sum_probs=189.8
Q ss_pred CCCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCC
Q 039619 23 RFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVC 102 (459)
Q Consensus 23 ~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l 102 (459)
.++++++|++.+... ..........+++|+.|.+.++... .+... ....+ ++|++|+++++.--
T Consensus 43 ~l~~l~~l~l~~~~l-~~l~~~~~~~l~~L~~L~L~~n~i~-----------~~~~~---~~~~l-~~L~~L~L~~n~l~ 106 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIE-----------EIDTY---AFAYA-HTIQKLYMGFNAIR 106 (390)
T ss_dssp GGCCCSEEEEESCEE-SEECTHHHHHCCCCSEEECTTSCCC-----------EECTT---TTTTC-TTCCEEECCSSCCC
T ss_pred ccCCceEEEecCCch-hhCChhHhcccccCcEEECCCCccc-----------ccChh---hccCC-CCcCEEECCCCCCC
Confidence 468899999877543 3333222346889999999877532 11111 11233 48999999986310
Q ss_pred ----CCCCccc-eeEEEEecCCCCccccCCc-cccccCcEEEeecCCCceeecc--ccccccccceEEeecccCCccccc
Q 039619 103 ----YEPLTIP-VYQLQIIPCPSLTSLWSKS-ELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESIAE 174 (459)
Q Consensus 103 ----~~l~~lp-L~~L~l~~c~~l~~lp~~~-~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~lp~ 174 (459)
..+..++ |++|++++ +.++.+|... ..+++|++|+++++ .+..++. ...+ ++|++|+++++ .++.++
T Consensus 107 ~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l-~~L~~L~l~~n-~l~~~~- 181 (390)
T 3o6n_A 107 YLPPHVFQNVPLLTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQAT-TSLQNLQLSSN-RLTHVD- 181 (390)
T ss_dssp CCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSC-TTCCEEECCSS-CCSBCC-
T ss_pred cCCHHHhcCCCCCCEEECCC-CccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCC-CCCCEEECCCC-cCCccc-
Confidence 0122233 99999988 4677887543 55679999999885 5666542 3567 89999999885 555553
Q ss_pred cCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCC
Q 039619 175 GLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRF 254 (459)
Q Consensus 175 ~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l 254 (459)
+..+++|+.|+++++ .+..+ ...++|++|+++++ .+..++. ..+++|++|+++++.++... .+..+
T Consensus 182 -~~~l~~L~~L~l~~n-~l~~~----~~~~~L~~L~l~~n-~l~~~~~-~~~~~L~~L~l~~n~l~~~~------~l~~l 247 (390)
T 3o6n_A 182 -LSLIPSLFHANVSYN-LLSTL----AIPIAVEELDASHN-SINVVRG-PVNVELTILKLQHNNLTDTA------WLLNY 247 (390)
T ss_dssp -GGGCTTCSEEECCSS-CCSEE----ECCSSCSEEECCSS-CCCEEEC-CCCSSCCEEECCSSCCCCCG------GGGGC
T ss_pred -cccccccceeecccc-ccccc----CCCCcceEEECCCC-eeeeccc-cccccccEEECCCCCCcccH------HHcCC
Confidence 556788888888876 44433 23457888888775 4555543 34577888888887776544 56777
Q ss_pred CccCEEEEeCCcCCCceec-CCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCC-CCCC
Q 039619 255 TSVRLLTLFGGECCGVVSF-PPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCPKLQKFPDN-GLPT 331 (459)
Q Consensus 255 ~~L~~L~l~~~~c~~l~~l-~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~-~l~~ 331 (459)
++|++|++++ + .+..+ |..+ ..+++|++|++++ +.++.++ ....+++|++|++++| .++.+|.. .-++
T Consensus 248 ~~L~~L~Ls~--n-~l~~~~~~~~----~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~ 318 (390)
T 3o6n_A 248 PGLVEVDLSY--N-ELEKIMYHPF----VKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFD 318 (390)
T ss_dssp TTCSEEECCS--S-CCCEEESGGG----TTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHT
T ss_pred CCccEEECCC--C-cCCCcChhHc----cccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCC-cceecCccccccC
Confidence 8888888877 3 44333 4333 2567788888887 6777777 5667778888888775 56666542 1156
Q ss_pred CcceEEeeCCchhHHhhhcCcCCccccccCCCeEEeCcee
Q 039619 332 SLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCHY 371 (459)
Q Consensus 332 sL~~L~i~~c~~L~~~~~~~~~~~~~~i~~i~~l~~~~~~ 371 (459)
+|++|++++|+- ... .......+..+.+.++.
T Consensus 319 ~L~~L~L~~N~i-~~~-------~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 319 RLENLYLDHNSI-VTL-------KLSTHHTLKNLTLSHND 350 (390)
T ss_dssp TCSEEECCSSCC-CCC-------CCCTTCCCSEEECCSSC
T ss_pred cCCEEECCCCcc-cee-------CchhhccCCEEEcCCCC
Confidence 788888877752 111 12334466667776543
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=3.1e-18 Score=174.38 Aligned_cols=313 Identities=15% Similarity=0.100 Sum_probs=201.4
Q ss_pred CCCCCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccC-CCCCCCcccCCCCC-----CCCCCCCCCcCce
Q 039619 21 SSRFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKG-GGSKGNKTADPGKR-----SNNGPVSVTLKDP 94 (459)
Q Consensus 21 ~~~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~lp~~L~~L 94 (459)
...+++|++|++.++...... . ...+++|+.|.+.++....... ......+.++.... .....+ ++|++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~-~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l-~~L~~L 139 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDIT-P--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL-TNLNRL 139 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCG-G--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTC-TTCSEE
T ss_pred hhhhcCCCEEECCCCccCCch-h--hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChHHcCC-CCCCEE
Confidence 345788999998876543222 2 4467888888887765321110 01111111111110 001122 256666
Q ss_pred EEeCCCCCCCCCccc-------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeeccc
Q 039619 95 EVLDCPVCYEPLTIP-------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCS 167 (459)
Q Consensus 95 ~l~~c~~l~~l~~lp-------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~ 167 (459)
++++| .+..+| |++|++.+ .+..++ ....+++|++|+++++ .+..++....+ ++|++|++++|
T Consensus 140 ~l~~n----~l~~~~~~~~l~~L~~L~l~~--~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~l~~l-~~L~~L~l~~n- 209 (466)
T 1o6v_A 140 ELSSN----TISDISALSGLTSLQQLSFGN--QVTDLK-PLANLTTLERLDISSN-KVSDISVLAKL-TNLESLIATNN- 209 (466)
T ss_dssp EEEEE----EECCCGGGTTCTTCSEEEEEE--SCCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGC-TTCSEEECCSS-
T ss_pred ECCCC----ccCCChhhccCCcccEeecCC--cccCch-hhccCCCCCEEECcCC-cCCCChhhccC-CCCCEEEecCC-
Confidence 66553 122222 66666642 233333 2344568888888885 46666656677 89999999986
Q ss_pred CCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccC
Q 039619 168 NLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILER 247 (459)
Q Consensus 168 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~ 247 (459)
.+..++. ++.+++|++|++++| .+..++ .+..+++|+.|++++|. +..++....+++|++|+++++.+....
T Consensus 210 ~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~---- 281 (466)
T 1o6v_A 210 QISDITP-LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGANQISNIS---- 281 (466)
T ss_dssp CCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCCCCG----
T ss_pred ccccccc-ccccCCCCEEECCCC-Ccccch-hhhcCCCCCEEECCCCc-cccchhhhcCCCCCEEECCCCccCccc----
Confidence 4555543 677899999999997 566664 57788999999998864 555554556789999999998887654
Q ss_pred CCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCCCCcCCCC
Q 039619 248 GPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPDN 327 (459)
Q Consensus 248 ~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~lp~~ 327 (459)
.+..+++|+.|++++ +.+..++.- ..+++|+.|++++ +.+..++.+..+++|++|++++| .+..++..
T Consensus 282 --~~~~l~~L~~L~L~~---n~l~~~~~~-----~~l~~L~~L~L~~-n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~l 349 (466)
T 1o6v_A 282 --PLAGLTALTNLELNE---NQLEDISPI-----SNLKNLTYLTLYF-NNISDISPVSSLTKLQRLFFYNN-KVSDVSSL 349 (466)
T ss_dssp --GGTTCTTCSEEECCS---SCCSCCGGG-----GGCTTCSEEECCS-SCCSCCGGGGGCTTCCEEECCSS-CCCCCGGG
T ss_pred --cccCCCccCeEEcCC---CcccCchhh-----cCCCCCCEEECcC-CcCCCchhhccCccCCEeECCCC-ccCCchhh
Confidence 467899999999998 355555542 2678999999998 56776665678899999999986 66666553
Q ss_pred CCCCCcceEEeeCCchhHHhhhcCcCCccccccCCCeEEeCceeeeC
Q 039619 328 GLPTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCHYVID 374 (459)
Q Consensus 328 ~l~~sL~~L~i~~c~~L~~~~~~~~~~~~~~i~~i~~l~~~~~~~l~ 374 (459)
.-+++|+.|++++|..-. .. ....+.++..+.+.+|....
T Consensus 350 ~~l~~L~~L~l~~n~l~~-~~------~~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 350 ANLTNINWLSAGHNQISD-LT------PLANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TTCTTCCEEECCSSCCCB-CG------GGTTCTTCCEEECCCEEEEC
T ss_pred ccCCCCCEEeCCCCccCc-cc------hhhcCCCCCEEeccCCcccC
Confidence 347899999999885321 11 12344566667777665443
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.80 E-value=2.9e-18 Score=180.24 Aligned_cols=190 Identities=16% Similarity=0.077 Sum_probs=80.3
Q ss_pred cCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccC---cccCCCCCCccEE
Q 039619 133 TLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKAL---PNGLRNLTSLQYL 209 (459)
Q Consensus 133 ~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l---p~~l~~l~~L~~L 209 (459)
+|++|++++|.. +.+|.. .+ ++|++|+++++..+..+ .+..+++|++|+++++ .+..+ |..+..+++|++|
T Consensus 308 ~L~~L~l~~n~l-~~lp~~-~l-~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L 381 (606)
T 3vq2_A 308 KWQSLSIIRCQL-KQFPTL-DL-PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHL 381 (606)
T ss_dssp CCSEEEEESCCC-SSCCCC-CC-SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEE
T ss_pred cCCEEEcccccC-cccccC-CC-CccceeeccCCcCccch--hhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEe
Confidence 444444444322 444422 33 44444444444333222 2333444444444443 22211 3333444455555
Q ss_pred eeccCCCCccccCC-CCCCCccEEEEecCcccccccc-cCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCc
Q 039619 210 LIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLIL-ERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASL 287 (459)
Q Consensus 210 ~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L 287 (459)
++++|. +..+|.. ..+++|++|+++++.+.... + . .+..+++|++|++++ |......|..+ ..+++|
T Consensus 382 ~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~---~~~~l~~L~~L~l~~--n~l~~~~~~~~----~~l~~L 450 (606)
T 3vq2_A 382 DLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVT-EFS---AFLSLEKLLYLDISY--TNTKIDFDGIF----LGLTSL 450 (606)
T ss_dssp ECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTT-TTT---TTTTCTTCCEEECTT--SCCEECCTTTT----TTCTTC
T ss_pred ECCCCc-cccchhhccCCCCCCeeECCCCccCCcc-Chh---hhhccccCCEEECcC--CCCCccchhhh----cCCCCC
Confidence 554432 3333322 23455555555554444322 1 1 344555555555555 23222233322 134455
Q ss_pred ceEEeecCCCCCc--cC-CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCC
Q 039619 288 KHLSIWNFPNLER--IS-SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGC 341 (459)
Q Consensus 288 ~~L~l~~c~~l~~--l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c 341 (459)
++|++++ +.+.. +| .+..+++|++|++++| .++.++...+ +++|++|++++|
T Consensus 451 ~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 451 NTLKMAG-NSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp CEEECTT-CEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEECCC-CcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCC
Confidence 5555555 23332 33 4455555555555554 2333322111 345555555555
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=4.9e-18 Score=183.79 Aligned_cols=296 Identities=12% Similarity=0.096 Sum_probs=134.5
Q ss_pred CCCCCCeEeccCCCccCcccccCCccCCccceeeccccccccc----c--------CCCCCCCcccCCCCCC-----C--
Q 039619 23 RFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAAD----K--------GGGSKGNKTADPGKRS-----N-- 83 (459)
Q Consensus 23 ~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~----~--------~~~~~~~~~~~~~~~~-----~-- 83 (459)
.+++|++|++.++....... .....+++|+.|.+.++..+.. . ......++.++..... .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHH
T ss_pred cCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChh
Confidence 57899999998875443332 3345688999999988752210 0 0000011111111100 0
Q ss_pred -CCCCCCCcCceEEeCCCCCCCCCccc-------eeEEEEecCCCCccccCCcccccc-CcEEEeecCCCceeeccc-cc
Q 039619 84 -NGPVSVTLKDPEVLDCPVCYEPLTIP-------VYQLQIIPCPSLTSLWSKSELPAT-LENIYVDRCSKLAFLSLR-GN 153 (459)
Q Consensus 84 -~~~lp~~L~~L~l~~c~~l~~l~~lp-------L~~L~l~~c~~l~~lp~~~~~~~~-L~~L~l~~c~~l~~l~~~-~~ 153 (459)
...++ +|++|+++++ .+..+| |+.|+++++ .++.+|.....+++ |++|+++++ .+..+|.. ..
T Consensus 568 ~l~~L~-~L~~L~Ls~N----~l~~lp~~~~L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N-~L~~lp~~~~~ 640 (876)
T 4ecn_A 568 SLQKMV-KLGLLDCVHN----KVRHLEAFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNA 640 (876)
T ss_dssp HHTTCT-TCCEEECTTS----CCCBCCCCCTTSEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSS-CCCSCCSCCCT
T ss_pred hhhcCC-CCCEEECCCC----CcccchhhcCCCcceEEECcCC-ccccchHHHhhccccCCEEECcCC-CCCcCchhhhc
Confidence 11111 4555555443 222222 555555442 23344433333334 555555543 23344421 11
Q ss_pred cc-cccceEEeecccCCcccc---ccCC--CCCcccEEeeccccCcccCcccCC-CCCCccEEeeccCCCCccccCCCC-
Q 039619 154 LS-KALKHLYIISCSNLESIA---EGLD--DNTSLETMEIFICQNLKALPNGLR-NLTSLQYLLIQDCPTIGSFTANCF- 225 (459)
Q Consensus 154 lp-~~L~~L~l~~c~~l~~lp---~~l~--~l~~L~~L~l~~c~~l~~lp~~l~-~l~~L~~L~l~~c~~l~~lp~~~~- 225 (459)
++ ++|+.|+++++.....+| ..+. .+++|+.|++++| .+..+|..+. .+++|+.|++++| .+..+|...+
T Consensus 641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~ 718 (876)
T 4ecn_A 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNN-LMTSIPENSLK 718 (876)
T ss_dssp TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSS
T ss_pred cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCC-cCCccChHHhc
Confidence 10 225555555532211111 1111 2235555555554 3334444332 4555555555553 3444443311
Q ss_pred -C-------CCccEEEEecCcccccccccCCCCCC--CCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeec-
Q 039619 226 -P-------TNLASVCIDYEKIYKPLILERGPGLH--RFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWN- 294 (459)
Q Consensus 226 -~-------~~L~~L~l~~~~l~~~~~~~~~~~l~--~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~- 294 (459)
. ++|++|+++++.++. + +. .+. .+++|+.|++++ +.+..+|... ..+++|+.|++++
T Consensus 719 ~~~~~l~nl~~L~~L~Ls~N~L~~-l-p~---~l~~~~l~~L~~L~Ls~---N~L~~lp~~l----~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 719 PKDGNYKNTYLLTTIDLRFNKLTS-L-SD---DFRATTLPYLSNMDVSY---NCFSSFPTQP----LNSSQLKAFGIRHQ 786 (876)
T ss_dssp CTTSCCTTGGGCCEEECCSSCCCC-C-CG---GGSTTTCTTCCEEECCS---SCCSSCCCGG----GGCTTCCEEECCCC
T ss_pred cccccccccCCccEEECCCCCCcc-c-hH---HhhhccCCCcCEEEeCC---CCCCccchhh----hcCCCCCEEECCCC
Confidence 1 155566665555542 2 22 333 555666666655 2344455444 2455566666544
Q ss_pred -----CCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEEeeCCc
Q 039619 295 -----FPNLERIS-SIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCP 342 (459)
Q Consensus 295 -----c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c~ 342 (459)
+.-...+| .+..+++|++|++++| .+..+|.. +.++|+.|++++|+
T Consensus 787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~-l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK-LTPQLYILDIADNP 838 (876)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCSSSCEEECCSCT
T ss_pred CCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHh-hcCCCCEEECCCCC
Confidence 22233444 5555566666666554 33555543 33556666666654
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.79 E-value=6.5e-18 Score=172.45 Aligned_cols=212 Identities=15% Similarity=0.139 Sum_probs=118.5
Q ss_pred CCCCcCceEEeCCCCCCCCCccc---------eeEEEEecCCCCccc-cCCccccccCcEEEeecCCCceeecc--cccc
Q 039619 87 VSVTLKDPEVLDCPVCYEPLTIP---------VYQLQIIPCPSLTSL-WSKSELPATLENIYVDRCSKLAFLSL--RGNL 154 (459)
Q Consensus 87 lp~~L~~L~l~~c~~l~~l~~lp---------L~~L~l~~c~~l~~l-p~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l 154 (459)
+|+++++|+++++ .+..++ |++|+++++ .++.+ |.....+++|++|+++++ .++.+|. ...+
T Consensus 30 ~~~~l~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l 103 (477)
T 2id5_A 30 IPTETRLLDLGKN----RIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGL 103 (477)
T ss_dssp CCTTCSEEECCSS----CCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTC
T ss_pred CCCCCcEEECCCC----ccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCC
Confidence 4556777777663 333332 777777663 44444 333444557777777663 4566652 2455
Q ss_pred ccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEE
Q 039619 155 SKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASV 232 (459)
Q Consensus 155 p~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L 232 (459)
++|++|+++++......+..+..+++|++|+++++.-....+..+..+++|++|++++| .++.++.. ..+++|+.|
T Consensus 104 -~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 104 -SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp -TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEE
T ss_pred -CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEE
Confidence 67777777765333333455666777777777766332233445666777777777665 34444432 345677777
Q ss_pred EEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCC
Q 039619 233 CIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSF 310 (459)
Q Consensus 233 ~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L 310 (459)
+++++.+.... +. .+..+++|++|++++ |..+..++... ....+|++|++++ +.++.++ .+..+++|
T Consensus 182 ~l~~n~i~~~~-~~---~~~~l~~L~~L~l~~--~~~~~~~~~~~----~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 182 RLRHLNINAIR-DY---SFKRLYRLKVLEISH--WPYLDTMTPNC----LYGLNLTSLSITH-CNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp EEESCCCCEEC-TT---CSCSCTTCCEEEEEC--CTTCCEECTTT----TTTCCCSEEEEES-SCCCSCCHHHHTTCTTC
T ss_pred eCCCCcCcEeC-hh---hcccCcccceeeCCC--CccccccCccc----ccCccccEEECcC-CcccccCHHHhcCcccc
Confidence 77765554332 22 456666777777766 55555555443 1233555555555 3444444 34445555
Q ss_pred CEEeccC
Q 039619 311 ESLQLCC 317 (459)
Q Consensus 311 ~~L~l~~ 317 (459)
++|++++
T Consensus 251 ~~L~Ls~ 257 (477)
T 2id5_A 251 RFLNLSY 257 (477)
T ss_dssp CEEECCS
T ss_pred CeeECCC
Confidence 5555554
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.79 E-value=3.3e-17 Score=172.18 Aligned_cols=175 Identities=16% Similarity=0.097 Sum_probs=98.7
Q ss_pred cccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEE
Q 039619 156 KALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVC 233 (459)
Q Consensus 156 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~ 233 (459)
++|++|+++++ .++.+|..+..+++|++|++++|......|..+..+++|++|++++|.....++.. ..+++|++|+
T Consensus 278 ~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 278 SGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp TTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred cCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 56666666664 45566666666666666666665322223445556666666666665443344432 3356777777
Q ss_pred EecCccccccc-ccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCcc-C--CCCCCCC
Q 039619 234 IDYEKIYKPLI-LERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERI-S--SIENLTS 309 (459)
Q Consensus 234 l~~~~l~~~~~-~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~--~l~~l~~ 309 (459)
++++.+..... + ..+..+++|++|++++ |.-....|..+ ..+++|++|++++ +.+... + .+..+++
T Consensus 357 l~~n~l~~~~~~~---~~~~~l~~L~~L~l~~--n~l~~~~~~~~----~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 357 LSHDDIETSDCCN---LQLRNLSHLQSLNLSY--NEPLSLKTEAF----KECPQLELLDLAF-TRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp CCSSCCCEEEEST---TTTTTCTTCCEEECCS--CSCEEECTTTT----TTCTTCSEEECTT-CCEECCTTCCTTTTCTT
T ss_pred CCCCccccccCcc---hhcccCCCCCEEECCC--CcCCcCCHHHh----cCCccCCeEECCC-CcCCCcccchhhhCccc
Confidence 77655543210 1 1456677777777776 33222233333 2456777777776 444433 2 3667777
Q ss_pred CCEEeccCCCCCCcCCCCCC--CCCcceEEeeCCc
Q 039619 310 FESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGCP 342 (459)
Q Consensus 310 L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~ 342 (459)
|++|++++|. +...+...+ +++|++|++++|.
T Consensus 427 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 427 LKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp CCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCB
T ss_pred CCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCCC
Confidence 7777777753 333332222 5677777777775
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.79 E-value=7.5e-18 Score=177.15 Aligned_cols=232 Identities=17% Similarity=0.123 Sum_probs=147.5
Q ss_pred CcCceEEeCCCCCCCCCccc------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceee---c-cccccccccc
Q 039619 90 TLKDPEVLDCPVCYEPLTIP------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFL---S-LRGNLSKALK 159 (459)
Q Consensus 90 ~L~~L~l~~c~~l~~l~~lp------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l---~-~~~~lp~~L~ 159 (459)
+|++|++++|. ++.+| |++|+++++..+..++ . ..+++|++|+++++ .+..+ + ....+ ++|+
T Consensus 308 ~L~~L~l~~n~----l~~lp~~~l~~L~~L~l~~n~~~~~~~-~-~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~-~~L~ 379 (606)
T 3vq2_A 308 KWQSLSIIRCQ----LKQFPTLDLPFLKSLTLTMNKGSISFK-K-VALPSLSYLDLSRN-ALSFSGCCSYSDLGT-NSLR 379 (606)
T ss_dssp CCSEEEEESCC----CSSCCCCCCSSCCEEEEESCSSCEECC-C-CCCTTCCEEECCSS-CEEEEEECCHHHHCC-SCCC
T ss_pred cCCEEEccccc----CcccccCCCCccceeeccCCcCccchh-h-ccCCCCCEEECcCC-ccCCCcchhhhhccC-Cccc
Confidence 77777777763 23333 7777777765555443 2 23447777777774 44444 2 12455 7778
Q ss_pred eEEeecccCCccccccCCCCCcccEEeeccccCcccCc-ccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecC
Q 039619 160 HLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALP-NGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYE 237 (459)
Q Consensus 160 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~ 237 (459)
+|++++| .+..+|..+..+++|++|++++|......| ..+..+++|++|++++|......|.. ..+++|++|+++++
T Consensus 380 ~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 380 HLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp EEECCSC-SEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred EeECCCC-ccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence 8888775 466677777777888888887774333333 35667778888888776543333332 44677888888777
Q ss_pred ccccc-ccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCcc-C-CCCCCCCCCEEe
Q 039619 238 KIYKP-LILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERI-S-SIENLTSFESLQ 314 (459)
Q Consensus 238 ~l~~~-~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~-~l~~l~~L~~L~ 314 (459)
.+.+. . +. .+..+++|++|++++ |.-....|..+ ..+++|++|++++ +.++.+ | .+..+++|++|+
T Consensus 459 ~l~~~~~-~~---~~~~l~~L~~L~Ls~--n~l~~~~~~~~----~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~ 527 (606)
T 3vq2_A 459 SFKDNTL-SN---VFANTTNLTFLDLSK--CQLEQISWGVF----DTLHRLQLLNMSH-NNLLFLDSSHYNQLYSLSTLD 527 (606)
T ss_dssp EEGGGEE-CS---CCTTCTTCCEEECTT--SCCCEECTTTT----TTCTTCCEEECCS-SCCSCEEGGGTTTCTTCCEEE
T ss_pred cCCCcch-HH---hhccCCCCCEEECCC--CcCCccChhhh----cccccCCEEECCC-CcCCCcCHHHccCCCcCCEEE
Confidence 76642 2 33 567778888888877 33333334333 2567788888887 466655 4 677778888888
Q ss_pred ccCCCCCCcCCCC--CCCCCcceEEeeCCc
Q 039619 315 LCCCPKLQKFPDN--GLPTSLLRLEIYGCP 342 (459)
Q Consensus 315 l~~c~~l~~lp~~--~l~~sL~~L~i~~c~ 342 (459)
+++| +++.+|.. .++.+|++|+++++|
T Consensus 528 l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 528 CSFN-RIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp CTTS-CCCCEESCGGGSCTTCCEEECCSCC
T ss_pred CCCC-cCcccCHhHhhhcccCcEEEccCCC
Confidence 8775 46677653 223468888887765
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.79 E-value=1.2e-17 Score=173.39 Aligned_cols=38 Identities=5% Similarity=-0.145 Sum_probs=24.9
Q ss_pred CCCCCCeEeccCCCccCcccccCCccCCccceeeccccc
Q 039619 23 RFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQET 61 (459)
Q Consensus 23 ~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 61 (459)
-+++|++|++.+... ..........+++|++|.+.++.
T Consensus 24 ~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~ 61 (549)
T 2z81_A 24 LTAAMKSLDLSFNKI-TYIGHGDLRACANLQVLILKSSR 61 (549)
T ss_dssp CCTTCCEEECCSSCC-CEECSSTTSSCTTCCEEECTTSC
T ss_pred CCCCccEEECcCCcc-CccChhhhhcCCcccEEECCCCC
Confidence 356888888887653 22323334567888888888765
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.78 E-value=7.8e-18 Score=177.01 Aligned_cols=218 Identities=16% Similarity=0.109 Sum_probs=93.7
Q ss_pred eeEEEEecCCCCccccCC-ccccccCcEEEeecCCCceeec----cccccccccceEEeecccCCccccccCCCCCcccE
Q 039619 110 VYQLQIIPCPSLTSLWSK-SELPATLENIYVDRCSKLAFLS----LRGNLSKALKHLYIISCSNLESIAEGLDDNTSLET 184 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~c~~l~~l~----~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~ 184 (459)
|++|+++++.....++.. ...+++|++|+++++ .+..++ ....+ ++|++|+++++......|..+..+++|++
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 404 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNL-SHLQSLNLSYNEPLSLKTEAFKECPQLEL 404 (606)
T ss_dssp CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS-CCCEEEESTTTTTTC-TTCCEEECCSCSCEEECTTTTTTCTTCSE
T ss_pred CCEEECCCCCcccccchhhhhccCcCCEEECCCC-ccccccCcchhcccC-CCCCEEECCCCcCCcCCHHHhcCCccCCe
Confidence 555555554333233322 233345555555553 233221 12344 55555555554222222444555555555
Q ss_pred EeeccccCcccCcc-cCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCccccccc--ccCCCCCCCCCccCEE
Q 039619 185 MEIFICQNLKALPN-GLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLI--LERGPGLHRFTSVRLL 260 (459)
Q Consensus 185 L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~L~~L 260 (459)
|++++|......|. .+..+++|++|++++|......+.. ..+++|++|+++++.+.+... +. .+..+++|++|
T Consensus 405 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~~~l~~L~~L 481 (606)
T 3t6q_A 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN---SLQTLGRLEIL 481 (606)
T ss_dssp EECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSC---GGGGCTTCCEE
T ss_pred EECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccch---hhccCCCccEE
Confidence 55555422222222 2445555555555554322111211 224555555555544432110 01 34445555555
Q ss_pred EEeCCcCCCceec-CCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcce
Q 039619 261 TLFGGECCGVVSF-PPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLR 335 (459)
Q Consensus 261 ~l~~~~c~~l~~l-~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~ 335 (459)
++++ | .+..+ |..+ ..+++|++|++++ +.++.++ .+..+++| +|++++| +++.++...+ +++|+.
T Consensus 482 ~Ls~--n-~l~~~~~~~~----~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~ 551 (606)
T 3t6q_A 482 VLSF--C-DLSSIDQHAF----TSLKMMNHVDLSH-NRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRT 551 (606)
T ss_dssp ECTT--S-CCCEECTTTT----TTCTTCCEEECCS-SCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSE
T ss_pred ECCC--C-ccCccChhhh----ccccCCCEEECCC-CccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCE
Confidence 5555 2 22222 2322 1345555555555 3444333 44555555 5555553 3333333221 345555
Q ss_pred EEeeCCc
Q 039619 336 LEIYGCP 342 (459)
Q Consensus 336 L~i~~c~ 342 (459)
|+++++|
T Consensus 552 L~l~~N~ 558 (606)
T 3t6q_A 552 INLRQNP 558 (606)
T ss_dssp EECTTCC
T ss_pred EeCCCCC
Confidence 5555544
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=3.5e-17 Score=170.60 Aligned_cols=37 Identities=11% Similarity=-0.041 Sum_probs=23.8
Q ss_pred CCCCCeEeccCCCccCcccccCCccCCccceeeccccc
Q 039619 24 FPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQET 61 (459)
Q Consensus 24 f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 61 (459)
+++|++|++.+.... .........+++|++|.+.++.
T Consensus 51 ~~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~ 87 (562)
T 3a79_B 51 PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNR 87 (562)
T ss_dssp CTTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCC
T ss_pred CCCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCC
Confidence 467888888776442 2222234567888888888775
No 23
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=2.5e-17 Score=159.88 Aligned_cols=234 Identities=15% Similarity=0.195 Sum_probs=180.5
Q ss_pred CCCCCcCceEEeCCCCCCCCCcc--------c-eeEEEEecCCCCccc-cCCccccccCcEEEeecCCCceeeccccccc
Q 039619 86 PVSVTLKDPEVLDCPVCYEPLTI--------P-VYQLQIIPCPSLTSL-WSKSELPATLENIYVDRCSKLAFLSLRGNLS 155 (459)
Q Consensus 86 ~lp~~L~~L~l~~c~~l~~l~~l--------p-L~~L~l~~c~~l~~l-p~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp 155 (459)
.+|+++++|+++++ .+..+ + |++|+++++ .++.+ |.....+++|++|+++++ .++.+|.. ..
T Consensus 49 ~~~~~l~~L~L~~n----~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~-~~- 120 (330)
T 1xku_A 49 DLPPDTALLDLQNN----KITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKN-QLKELPEK-MP- 120 (330)
T ss_dssp SCCTTCCEEECCSS----CCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSS-CC-
T ss_pred cCCCCCeEEECCCC----cCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCC-cCCccChh-hc-
Confidence 35678999999985 34433 3 999999884 56665 545666779999999985 67777743 23
Q ss_pred cccceEEeecccCCcccc-ccCCCCCcccEEeeccccCc--ccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEE
Q 039619 156 KALKHLYIISCSNLESIA-EGLDDNTSLETMEIFICQNL--KALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASV 232 (459)
Q Consensus 156 ~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l--~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L 232 (459)
++|++|+++++ .+..++ ..+..+++|++|+++++..- ...+..+..+++|++|+++++ .++.+|.. .+++|++|
T Consensus 121 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~-~~~~L~~L 197 (330)
T 1xku_A 121 KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQG-LPPSLTEL 197 (330)
T ss_dssp TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSS-CCTTCSEE
T ss_pred ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcc-ccccCCEE
Confidence 89999999986 455554 45788999999999987432 144567788999999999886 56677754 45899999
Q ss_pred EEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCC-CCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCC
Q 039619 233 CIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPP-EKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSF 310 (459)
Q Consensus 233 ~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~-~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L 310 (459)
+++++.++... +. .+..+++|++|++++ +.+..++. .+ ..+++|++|++++ +.++.+| .+..+++|
T Consensus 198 ~l~~n~l~~~~-~~---~~~~l~~L~~L~Ls~---n~l~~~~~~~~----~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L 265 (330)
T 1xku_A 198 HLDGNKITKVD-AA---SLKGLNNLAKLGLSF---NSISAVDNGSL----ANTPHLRELHLNN-NKLVKVPGGLADHKYI 265 (330)
T ss_dssp ECTTSCCCEEC-TG---GGTTCTTCCEEECCS---SCCCEECTTTG----GGSTTCCEEECCS-SCCSSCCTTTTTCSSC
T ss_pred ECCCCcCCccC-HH---HhcCCCCCCEEECCC---CcCceeChhhc----cCCCCCCEEECCC-CcCccCChhhccCCCc
Confidence 99998887654 44 688999999999998 45666554 33 3678999999999 6899999 89999999
Q ss_pred CEEeccCCCCCCcCCCCCC--------CCCcceEEeeCCch
Q 039619 311 ESLQLCCCPKLQKFPDNGL--------PTSLLRLEIYGCPL 343 (459)
Q Consensus 311 ~~L~l~~c~~l~~lp~~~l--------~~sL~~L~i~~c~~ 343 (459)
++|++++| .++.++...+ .++++.|++.++|.
T Consensus 266 ~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 266 QVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CEEECCCC-cCCccChhhcCCcccccccccccceEeecCcc
Confidence 99999985 6888876433 36788999999874
No 24
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.78 E-value=1.1e-17 Score=169.78 Aligned_cols=266 Identities=11% Similarity=0.069 Sum_probs=168.5
Q ss_pred CCCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCC
Q 039619 23 RFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVC 102 (459)
Q Consensus 23 ~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l 102 (459)
.+++|++|++.+..-.. .. ....+++|+.|.+.++... . + ..+.+ ++|++|++++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~-~~--~l~~l~~L~~L~Ls~n~l~-~----------~------~~~~l-~~L~~L~Ls~N--- 95 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITD-MT--GIEKLTGLTKLICTSNNIT-T----------L------DLSQN-TNLTYLACDSN--- 95 (457)
T ss_dssp HHTTCCEEECCSSCCCC-CT--TGGGCTTCSEEECCSSCCS-C----------C------CCTTC-TTCSEEECCSS---
T ss_pred HcCCCCEEEccCCCccc-Ch--hhcccCCCCEEEccCCcCC-e----------E------ccccC-CCCCEEECcCC---
Confidence 57889999988764322 21 3456888999888877522 0 0 12233 37888888885
Q ss_pred CCCCccc------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccC
Q 039619 103 YEPLTIP------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGL 176 (459)
Q Consensus 103 ~~l~~lp------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l 176 (459)
.+..+| |++|+++++ .++.++ ...+++|++|+++++ .++.++. +.+ ++|++|++++|..+..+ .+
T Consensus 96 -~l~~~~~~~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N-~l~~l~l-~~l-~~L~~L~l~~n~~~~~~--~~ 166 (457)
T 3bz5_A 96 -KLTNLDVTPLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARN-TLTEIDV-SHN-TQLTELDCHLNKKITKL--DV 166 (457)
T ss_dssp -CCSCCCCTTCTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTS-CCSCCCC-TTC-TTCCEEECTTCSCCCCC--CC
T ss_pred -CCceeecCCCCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCC-ccceecc-ccC-CcCCEEECCCCCccccc--cc
Confidence 333333 888888774 566665 344558888888774 5666653 456 78888888887666666 36
Q ss_pred CCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCc
Q 039619 177 DDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTS 256 (459)
Q Consensus 177 ~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~ 256 (459)
..+++|++|+++++ .++.+| +..+++|+.|++++| .++.++ .+.+++|++|++++++++. . .+..+++
T Consensus 167 ~~l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~~N-~l~~~~-l~~l~~L~~L~Ls~N~l~~-i------p~~~l~~ 234 (457)
T 3bz5_A 167 TPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTN-NITKLD-LNQNIQLTFLDCSSNKLTE-I------DVTPLTQ 234 (457)
T ss_dssp TTCTTCCEEECCSS-CCCCCC--CTTCTTCCEEECCSS-CCSCCC-CTTCTTCSEEECCSSCCSC-C------CCTTCTT
T ss_pred ccCCcCCEEECCCC-ccceec--cccCCCCCEEECcCC-cCCeec-cccCCCCCEEECcCCcccc-c------CccccCC
Confidence 67788888888876 566665 667788888888775 355553 3446788888888877764 3 3467778
Q ss_pred cCEEEEeCCcCCCceecCCCCCCCccCCCCcceE----------EeecCCCCCccCCCCCCCCCCEEeccCCCCCCcCCC
Q 039619 257 VRLLTLFGGECCGVVSFPPEKDTGKALPASLKHL----------SIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPD 326 (459)
Q Consensus 257 L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L----------~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~lp~ 326 (459)
|+.|++++ +.+..+|.. .+++|+.| ++++|..+..+| ...+++|+.|++++|+.++.+|.
T Consensus 235 L~~L~l~~---N~l~~~~~~------~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 235 LTYFDCSV---NPLTELDVS------TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp CSEEECCS---SCCSCCCCT------TCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred CCEEEeeC---CcCCCcCHH------HCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceecc
Confidence 88888887 355555532 33444444 444433333333 34567788888887776666654
Q ss_pred CCCCCCcceEEeeCCchhH
Q 039619 327 NGLPTSLLRLEIYGCPLIE 345 (459)
Q Consensus 327 ~~l~~sL~~L~i~~c~~L~ 345 (459)
-.++|+.|++++|+.|+
T Consensus 305 --~~~~L~~L~l~~~~~L~ 321 (457)
T 3bz5_A 305 --QAAGITELDLSQNPKLV 321 (457)
T ss_dssp --TTCCCSCCCCTTCTTCC
T ss_pred --CCCcceEechhhcccCC
Confidence 12445555555555444
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=4.9e-19 Score=170.75 Aligned_cols=239 Identities=12% Similarity=0.061 Sum_probs=173.8
Q ss_pred CCcCceEEeCCCCCCCCC---ccc--------eeEEEEecCCCCc-cccCCccccccCcEEEeecCCCceeecc-ccccc
Q 039619 89 VTLKDPEVLDCPVCYEPL---TIP--------VYQLQIIPCPSLT-SLWSKSELPATLENIYVDRCSKLAFLSL-RGNLS 155 (459)
Q Consensus 89 ~~L~~L~l~~c~~l~~l~---~lp--------L~~L~l~~c~~l~-~lp~~~~~~~~L~~L~l~~c~~l~~l~~-~~~lp 155 (459)
.++++|+++++ .+. .+| |++|++++++.+. .+|.....+++|++|+++++.....+|. ...+
T Consensus 50 ~~l~~L~L~~~----~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l- 124 (313)
T 1ogq_A 50 YRVNNLDLSGL----NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI- 124 (313)
T ss_dssp CCEEEEEEECC----CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC-
T ss_pred ceEEEEECCCC----CccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC-
Confidence 47888888885 333 344 8999998534444 6676666777999999988643336663 3567
Q ss_pred cccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCC-CccEEeeccCCCCccccCC-CCCCCccEEE
Q 039619 156 KALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLT-SLQYLLIQDCPTIGSFTAN-CFPTNLASVC 233 (459)
Q Consensus 156 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~ 233 (459)
++|++|+++++.....+|..+..+++|++|+++++.-...+|..+..++ +|++|+++++..-..+|.. ..++ |++|+
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence 8999999998654446788888899999999998854447888888887 8999999886533345543 2344 99999
Q ss_pred EecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCC-ccC-CCCCCCCCC
Q 039619 234 IDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLE-RIS-SIENLTSFE 311 (459)
Q Consensus 234 l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~-~l~~l~~L~ 311 (459)
++++.+.... +. .+..+++|+.|++++ +.+...+... ..+++|++|++++ +.++ .+| .+..+++|+
T Consensus 204 Ls~N~l~~~~-~~---~~~~l~~L~~L~L~~---N~l~~~~~~~----~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~ 271 (313)
T 1ogq_A 204 LSRNMLEGDA-SV---LFGSDKNTQKIHLAK---NSLAFDLGKV----GLSKNLNGLDLRN-NRIYGTLPQGLTQLKFLH 271 (313)
T ss_dssp CCSSEEEECC-GG---GCCTTSCCSEEECCS---SEECCBGGGC----CCCTTCCEEECCS-SCCEECCCGGGGGCTTCC
T ss_pred CcCCcccCcC-CH---HHhcCCCCCEEECCC---CceeeecCcc----cccCCCCEEECcC-CcccCcCChHHhcCcCCC
Confidence 9998887554 44 678899999999998 3444322223 2678999999998 5666 677 788899999
Q ss_pred EEeccCCCCCCcCCCCCCCCCcceEEeeCCchhH
Q 039619 312 SLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIE 345 (459)
Q Consensus 312 ~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c~~L~ 345 (459)
+|++++|+--..+|..+-+++|+.+++.+++.+.
T Consensus 272 ~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 272 SLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp EEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred EEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 9999987544477775456788888888887554
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=1.1e-17 Score=175.59 Aligned_cols=280 Identities=13% Similarity=0.069 Sum_probs=150.0
Q ss_pred CCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCCC
Q 039619 24 FPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVCY 103 (459)
Q Consensus 24 f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l~ 103 (459)
+++++.+++.+... ..........+++|+.|.+.++.... +... ....+ ++|++|++++|.--.
T Consensus 50 l~~l~~l~l~~~~l-~~lp~~~~~~l~~L~~L~L~~n~l~~-----------~~~~---~~~~l-~~L~~L~L~~n~l~~ 113 (597)
T 3oja_B 50 LNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEE-----------IDTY---AFAYA-HTIQKLYMGFNAIRY 113 (597)
T ss_dssp GCCCSEEEESSCEE-SEECTHHHHHCCCCSEEECTTSCCCE-----------ECTT---TTTTC-TTCCEEECCSSCCCC
T ss_pred CCCceEEEeeCCCC-CCcCHHHHccCCCCcEEECCCCCCCC-----------CChH---HhcCC-CCCCEEECCCCcCCC
Confidence 46667777665432 22222222346778888887664221 1100 11122 367777777642100
Q ss_pred ----CCCccc-eeEEEEecCCCCccccCCc-cccccCcEEEeecCCCceeec--cccccccccceEEeecccCCcccccc
Q 039619 104 ----EPLTIP-VYQLQIIPCPSLTSLWSKS-ELPATLENIYVDRCSKLAFLS--LRGNLSKALKHLYIISCSNLESIAEG 175 (459)
Q Consensus 104 ----~l~~lp-L~~L~l~~c~~l~~lp~~~-~~~~~L~~L~l~~c~~l~~l~--~~~~lp~~L~~L~l~~c~~l~~lp~~ 175 (459)
.+..++ |++|++++| .++.+|... ..+++|++|+++++ .+..++ ..+.+ ++|++|+++++ .+..++
T Consensus 114 ~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l-~~L~~L~L~~N-~l~~~~-- 187 (597)
T 3oja_B 114 LPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQAT-TSLQNLQLSSN-RLTHVD-- 187 (597)
T ss_dssp CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTC-TTCCEEECTTS-CCSBCC--
T ss_pred CCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcC-CcCcEEECcCC-CCCCcC--
Confidence 011222 777777663 555666432 44557777777764 444443 23455 67777777664 344442
Q ss_pred CCCCCcccEEeecccc------------------CcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecC
Q 039619 176 LDDNTSLETMEIFICQ------------------NLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYE 237 (459)
Q Consensus 176 l~~l~~L~~L~l~~c~------------------~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~ 237 (459)
+..+++|+.|+++++. .+..++..+ .++|+.|++++|. +...+....+++|++|+++++
T Consensus 188 ~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~-l~~~~~l~~l~~L~~L~Ls~N 264 (597)
T 3oja_B 188 LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNN-LTDTAWLLNYPGLVEVDLSYN 264 (597)
T ss_dssp GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSC-CCCCGGGGGCTTCSEEECCSS
T ss_pred hhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc--CCCCCEEECCCCC-CCCChhhccCCCCCEEECCCC
Confidence 3334555555555431 233332221 2456666665542 333333344566777777766
Q ss_pred cccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEecc
Q 039619 238 KIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLC 316 (459)
Q Consensus 238 ~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~ 316 (459)
.+.... +. .+..+++|+.|++++ +.+..+|... ..+++|+.|++++ +.+..+| .+..+++|++|+++
T Consensus 265 ~l~~~~-~~---~~~~l~~L~~L~Ls~---N~l~~l~~~~----~~l~~L~~L~Ls~-N~l~~i~~~~~~l~~L~~L~L~ 332 (597)
T 3oja_B 265 ELEKIM-YH---PFVKMQRLERLYISN---NRLVALNLYG----QPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLD 332 (597)
T ss_dssp CCCEEE-SG---GGTTCSSCCEEECTT---SCCCEEECSS----SCCTTCCEEECCS-SCCCCCGGGHHHHTTCSEEECC
T ss_pred ccCCCC-HH---HhcCccCCCEEECCC---CCCCCCCccc----ccCCCCcEEECCC-CCCCccCcccccCCCCCEEECC
Confidence 665443 33 556677777777766 3555555544 1456777777776 5666666 55666777777777
Q ss_pred CCCCCCcCCCCCCCCCcceEEeeCCc
Q 039619 317 CCPKLQKFPDNGLPTSLLRLEIYGCP 342 (459)
Q Consensus 317 ~c~~l~~lp~~~l~~sL~~L~i~~c~ 342 (459)
+| .+..++.. .+++|+.|++++++
T Consensus 333 ~N-~l~~~~~~-~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 333 HN-SIVTLKLS-THHTLKNLTLSHND 356 (597)
T ss_dssp SS-CCCCCCCC-TTCCCSEEECCSSC
T ss_pred CC-CCCCcChh-hcCCCCEEEeeCCC
Confidence 64 35555432 24677777777665
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.77 E-value=3.4e-17 Score=166.07 Aligned_cols=267 Identities=12% Similarity=0.071 Sum_probs=193.1
Q ss_pred CCCCCCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCC
Q 039619 20 SSSRFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDC 99 (459)
Q Consensus 20 ~~~~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c 99 (459)
....+++|++|++.++.-.. . ....+++|+.|.+.++.... + ..+.++ +|++|+++++
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~-~---~~~~l~~L~~L~Ls~N~l~~-----------~------~~~~l~-~L~~L~L~~N 116 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITT-L---DLSQNTNLTYLACDSNKLTN-----------L------DVTPLT-KLTYLNCDTN 116 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSC-C---CCTTCTTCSEEECCSSCCSC-----------C------CCTTCT-TCCEEECCSS
T ss_pred hhcccCCCCEEEccCCcCCe-E---ccccCCCCCEEECcCCCCce-----------e------ecCCCC-cCCEEECCCC
Confidence 44568999999998875432 2 25578999999999875220 0 123444 8999999995
Q ss_pred CCCCCCCccc------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCcccc
Q 039619 100 PVCYEPLTIP------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIA 173 (459)
Q Consensus 100 ~~l~~l~~lp------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp 173 (459)
.+..+| |++|++++ +.++.++ ...+++|++|+++++..+..++. +.+ ++|++|+++++ .++.+|
T Consensus 117 ----~l~~l~~~~l~~L~~L~l~~-N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~-~~l-~~L~~L~ls~n-~l~~l~ 186 (457)
T 3bz5_A 117 ----KLTKLDVSQNPLLTYLNCAR-NTLTEID--VSHNTQLTELDCHLNKKITKLDV-TPQ-TQLTTLDCSFN-KITELD 186 (457)
T ss_dssp ----CCSCCCCTTCTTCCEEECTT-SCCSCCC--CTTCTTCCEEECTTCSCCCCCCC-TTC-TTCCEEECCSS-CCCCCC
T ss_pred ----cCCeecCCCCCcCCEEECCC-Cccceec--cccCCcCCEEECCCCCccccccc-ccC-CcCCEEECCCC-ccceec
Confidence 444444 99999987 5676665 34556999999999877877753 467 89999999985 677776
Q ss_pred ccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCC
Q 039619 174 EGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHR 253 (459)
Q Consensus 174 ~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~ 253 (459)
+..+++|+.|+++++ .++.+ .+..+++|+.|+++++ .++.+| ...+++|++|+++++.++... +..
T Consensus 187 --l~~l~~L~~L~l~~N-~l~~~--~l~~l~~L~~L~Ls~N-~l~~ip-~~~l~~L~~L~l~~N~l~~~~-------~~~ 252 (457)
T 3bz5_A 187 --VSQNKLLNRLNCDTN-NITKL--DLNQNIQLTFLDCSSN-KLTEID-VTPLTQLTYFDCSVNPLTELD-------VST 252 (457)
T ss_dssp --CTTCTTCCEEECCSS-CCSCC--CCTTCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSCCSCCC-------CTT
T ss_pred --cccCCCCCEEECcCC-cCCee--ccccCCCCCEEECcCC-cccccC-ccccCCCCEEEeeCCcCCCcC-------HHH
Confidence 788999999999987 56666 3788999999999886 566777 456789999999998887533 244
Q ss_pred CCccCE----------EEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC---------CCCCCCCCCEEe
Q 039619 254 FTSVRL----------LTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS---------SIENLTSFESLQ 314 (459)
Q Consensus 254 l~~L~~----------L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---------~l~~l~~L~~L~ 314 (459)
+++|+. |++++ |.....+|.. .+++|+.|++++|..++.+| .+..+++|++|+
T Consensus 253 l~~L~~L~l~~n~L~~L~l~~--n~~~~~~~~~------~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~ 324 (457)
T 3bz5_A 253 LSKLTTLHCIQTDLLEIDLTH--NTQLIYFQAE------GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLY 324 (457)
T ss_dssp CTTCCEEECTTCCCSCCCCTT--CTTCCEEECT------TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred CCCCCEEeccCCCCCEEECCC--CccCCccccc------ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEE
Confidence 555554 45555 4445555532 56899999999987666655 245567788888
Q ss_pred ccCCCCCCcCCCCCCCCCcceEEeeCCc
Q 039619 315 LCCCPKLQKFPDNGLPTSLLRLEIYGCP 342 (459)
Q Consensus 315 l~~c~~l~~lp~~~l~~sL~~L~i~~c~ 342 (459)
++++ +++.++- +-+++|+.|+++++.
T Consensus 325 L~~N-~l~~l~l-~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 325 LNNT-ELTELDV-SHNTKLKSLSCVNAH 350 (457)
T ss_dssp CTTC-CCSCCCC-TTCTTCSEEECCSSC
T ss_pred CCCC-ccccccc-ccCCcCcEEECCCCC
Confidence 8774 5666642 236788999887753
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.77 E-value=7.8e-18 Score=175.49 Aligned_cols=212 Identities=17% Similarity=0.145 Sum_probs=105.2
Q ss_pred eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeecc
Q 039619 110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFI 189 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 189 (459)
|++|+++++ .++.+|...... +|++|++++| .+..+|. ..+ ++|++|+++++.....++. ..+++|++|++++
T Consensus 284 L~~L~l~~~-~l~~l~~~~~~~-~L~~L~l~~n-~~~~l~~-~~l-~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~ 356 (570)
T 2z63_A 284 VSSFSLVSV-TIERVKDFSYNF-GWQHLELVNC-KFGQFPT-LKL-KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSR 356 (570)
T ss_dssp CSEEEEESC-EECSCCBCCSCC-CCSEEEEESC-BCSSCCB-CBC-SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCS
T ss_pred ccEEEecCc-cchhhhhhhccC-CccEEeeccC-cccccCc-ccc-cccCEEeCcCCcccccccc--ccCCCCCEEeCcC
Confidence 666777663 445566555555 7777777775 3445554 344 6666666666543333222 4456666666665
Q ss_pred ccCcccC---cccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCC
Q 039619 190 CQNLKAL---PNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGG 265 (459)
Q Consensus 190 c~~l~~l---p~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~ 265 (459)
| .+... |..+..+++|++|++++|. +..++.. ..+++|++|+++++.+.... +. ..+..+++|++|++++
T Consensus 357 n-~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~--~~~~~l~~L~~L~l~~- 430 (570)
T 2z63_A 357 N-GLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMS-EF--SVFLSLRNLIYLDISH- 430 (570)
T ss_dssp S-CCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCT-TS--CTTTTCTTCCEEECTT-
T ss_pred C-ccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCcccccc-ch--hhhhcCCCCCEEeCcC-
Confidence 5 22222 3344455566666665543 3333322 23455666666555444322 10 1345555566666655
Q ss_pred cCCCceecCCCCCCCccCCCCcceEEeecCCCCC--ccC-CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeC
Q 039619 266 ECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLE--RIS-SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYG 340 (459)
Q Consensus 266 ~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~--~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~ 340 (459)
|......|..+ ..+++|++|++++| .+. .+| .+..+++|++|++++| .++.++...+ +++|++|++++
T Consensus 431 -n~l~~~~~~~~----~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 431 -THTRVAFNGIF----NGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp -SCCEECCTTTT----TTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred -Ccccccchhhh----hcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCC
Confidence 33222233322 13455555655552 332 344 5555555666666554 2333321111 35555555555
Q ss_pred C
Q 039619 341 C 341 (459)
Q Consensus 341 c 341 (459)
|
T Consensus 504 n 504 (570)
T 2z63_A 504 N 504 (570)
T ss_dssp S
T ss_pred C
Confidence 5
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.77 E-value=4.6e-17 Score=167.93 Aligned_cols=127 Identities=15% Similarity=0.154 Sum_probs=61.8
Q ss_pred CCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcccc--cccccCCCCCCCCCccCEEEEeCCcCCCcee-cCCC
Q 039619 201 RNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYK--PLILERGPGLHRFTSVRLLTLFGGECCGVVS-FPPE 276 (459)
Q Consensus 201 ~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~--~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~-l~~~ 276 (459)
..+++|++|++++|..-...|.. +.+++|++|+++++.+.. .. +. .+..+++|++|++++ +.+.. +|..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~-~~---~~~~l~~L~~L~Ls~---N~l~~~l~~~ 393 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI-AE---MTTQMKSLQQLDISQ---NSVSYDEKKG 393 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHH-HH---HHTTCTTCCEEECCS---SCCBCCGGGC
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccc-hH---HHhhCCCCCEEECCC---CcCCcccccc
Confidence 35566666666665322223322 345566666666655543 11 12 345666666666665 23333 4432
Q ss_pred CCCCccCCCCcceEEeecCCCC-CccC-CCCCCCCCCEEeccCCCCCCcCCCCC-CCCCcceEEeeCC
Q 039619 277 KDTGKALPASLKHLSIWNFPNL-ERIS-SIENLTSFESLQLCCCPKLQKFPDNG-LPTSLLRLEIYGC 341 (459)
Q Consensus 277 ~~~~~~~~~~L~~L~l~~c~~l-~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~-l~~sL~~L~i~~c 341 (459)
. ...+++|++|++++ +.+ ..++ .+. ++|++|++++| +++.+|... -+++|++|++++|
T Consensus 394 ~---~~~l~~L~~L~Ls~-N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 394 D---CSWTKSLLSLNMSS-NILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp S---CCCCTTCCEEECCS-SCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS
T ss_pred h---hccCccCCEEECcC-CCCCcchhhhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCC
Confidence 1 01345566666665 233 2222 222 45666666553 455555421 2455666666555
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=2.3e-17 Score=160.37 Aligned_cols=256 Identities=15% Similarity=0.208 Sum_probs=184.2
Q ss_pred CCCCcCceEEeCCCCCCCCCcc--------c-eeEEEEecCCCCccc-cCCccccccCcEEEeecCCCceeecccccccc
Q 039619 87 VSVTLKDPEVLDCPVCYEPLTI--------P-VYQLQIIPCPSLTSL-WSKSELPATLENIYVDRCSKLAFLSLRGNLSK 156 (459)
Q Consensus 87 lp~~L~~L~l~~c~~l~~l~~l--------p-L~~L~l~~c~~l~~l-p~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~ 156 (459)
++++|++|+++++ .+..+ + |++|+++++ .++.+ |.....+++|++|+++++ .++.+|... . +
T Consensus 52 ~~~~l~~L~l~~n----~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~-~-~ 123 (332)
T 2ft3_A 52 ISPDTTLLDLQNN----DISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNL-P-S 123 (332)
T ss_dssp CCTTCCEEECCSS----CCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSC-C-T
T ss_pred CCCCCeEEECCCC----cCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCC-cCCccCccc-c-c
Confidence 3568889998885 34333 3 999999885 56665 444566679999999885 677777432 2 7
Q ss_pred ccceEEeecccCCccccc-cCCCCCcccEEeeccccCc--ccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEE
Q 039619 157 ALKHLYIISCSNLESIAE-GLDDNTSLETMEIFICQNL--KALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVC 233 (459)
Q Consensus 157 ~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l--~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~ 233 (459)
+|++|+++++ .+..++. .+..+++|++|+++++..- ...|..+..+ +|++|+++++ .++.+|.. .+++|++|+
T Consensus 124 ~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~-~~~~L~~L~ 199 (332)
T 2ft3_A 124 SLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKD-LPETLNELH 199 (332)
T ss_dssp TCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSS-SCSSCSCCB
T ss_pred cCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCcc-ccCCCCEEE
Confidence 9999999985 5666754 4788999999999987432 2445566666 9999999885 46677653 458999999
Q ss_pred EecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCC-CCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCC
Q 039619 234 IDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPP-EKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFE 311 (459)
Q Consensus 234 l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~-~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~ 311 (459)
++++.+.... +. .+..+++|+.|++++ +.+..++. .+ ..+++|++|++++ +.++.+| .+..+++|+
T Consensus 200 l~~n~i~~~~-~~---~l~~l~~L~~L~L~~---N~l~~~~~~~~----~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~ 267 (332)
T 2ft3_A 200 LDHNKIQAIE-LE---DLLRYSKLYRLGLGH---NQIRMIENGSL----SFLPTLRELHLDN-NKLSRVPAGLPDLKLLQ 267 (332)
T ss_dssp CCSSCCCCCC-TT---SSTTCTTCSCCBCCS---SCCCCCCTTGG----GGCTTCCEEECCS-SCCCBCCTTGGGCTTCC
T ss_pred CCCCcCCccC-HH---HhcCCCCCCEEECCC---CcCCcCChhHh----hCCCCCCEEECCC-CcCeecChhhhcCccCC
Confidence 9998887654 44 688999999999998 46666654 23 3678999999999 7899999 888999999
Q ss_pred EEeccCCCCCCcCCCCCC--------CCCcceEEeeCCchhHHhhhcCcCCccccccCCCeEEeCce
Q 039619 312 SLQLCCCPKLQKFPDNGL--------PTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCH 370 (459)
Q Consensus 312 ~L~l~~c~~l~~lp~~~l--------~~sL~~L~i~~c~~L~~~~~~~~~~~~~~i~~i~~l~~~~~ 370 (459)
+|+++++ .++.++...+ .++|+.|++.++|........ ..+..+.++..+.+.++
T Consensus 268 ~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~---~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 268 VVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP---ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp EEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG---GGGTTBCCSTTEEC---
T ss_pred EEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCc---ccccccchhhhhhcccc
Confidence 9999985 6787775332 357899999998843221111 12344555566666544
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.77 E-value=2.2e-17 Score=167.40 Aligned_cols=291 Identities=14% Similarity=0.077 Sum_probs=185.6
Q ss_pred CCCCCCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCC
Q 039619 20 SSSRFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDC 99 (459)
Q Consensus 20 ~~~~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c 99 (459)
....+++|++|++.++.............+++|++|.+.++.... +... ....+ ++|++|++++|
T Consensus 49 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~---~~~~l-~~L~~L~L~~n 113 (455)
T 3v47_A 49 SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-----------LETG---AFNGL-ANLEVLTLTQC 113 (455)
T ss_dssp TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE-----------ECTT---TTTTC-TTCCEEECTTS
T ss_pred HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc-----------cChh---hccCc-ccCCEEeCCCC
Confidence 345689999999988765434444445678999999999875321 1111 11233 38999999886
Q ss_pred CCCCC-------CCccc-eeEEEEecCCCCccc-cCC-ccccccCcEEEeecCCCceeeccc--ccc-ccccceEEeecc
Q 039619 100 PVCYE-------PLTIP-VYQLQIIPCPSLTSL-WSK-SELPATLENIYVDRCSKLAFLSLR--GNL-SKALKHLYIISC 166 (459)
Q Consensus 100 ~~l~~-------l~~lp-L~~L~l~~c~~l~~l-p~~-~~~~~~L~~L~l~~c~~l~~l~~~--~~l-p~~L~~L~l~~c 166 (459)
.- .. +..++ |++|+++++ .++.+ |.. ...+++|++|+++++ .+..++.. ..+ ..+|+.|+++++
T Consensus 114 ~l-~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~~~L~~L~l~~n 190 (455)
T 3v47_A 114 NL-DGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFN-KVKSICEEDLLNFQGKHFTLLRLSSI 190 (455)
T ss_dssp CC-BTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTC-CBSCCCTTTSGGGTTCEEEEEECTTC
T ss_pred CC-CccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCC-cccccChhhhhccccccccccccccC
Confidence 31 11 23334 899999874 45554 422 455678999999885 34433211 111 034455555543
Q ss_pred cCCccccc---------cCCCCCcccEEeecccc---------------------------CcccC------c----ccC
Q 039619 167 SNLESIAE---------GLDDNTSLETMEIFICQ---------------------------NLKAL------P----NGL 200 (459)
Q Consensus 167 ~~l~~lp~---------~l~~l~~L~~L~l~~c~---------------------------~l~~l------p----~~l 200 (459)
.+..++. .+..+++|++|++++|. ..... + ..+
T Consensus 191 -~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 191 -TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp -BCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred -cccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 2222211 12233445555555442 11100 0 011
Q ss_pred C--CCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecC-CC
Q 039619 201 R--NLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFP-PE 276 (459)
Q Consensus 201 ~--~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~-~~ 276 (459)
. ..++|+.|+++++......+.. ..+++|++|+++++.+.... +. .+..+++|++|++++ +.+..++ ..
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~---~~~~l~~L~~L~Ls~---N~l~~~~~~~ 342 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID-DN---AFWGLTHLLKLNLSQ---NFLGSIDSRM 342 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TT---TTTTCTTCCEEECCS---SCCCEECGGG
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC-hh---HhcCcccCCEEECCC---CccCCcChhH
Confidence 1 2368999999987544333433 55889999999998887654 44 688999999999999 3555554 33
Q ss_pred CCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCCc
Q 039619 277 KDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGCP 342 (459)
Q Consensus 277 ~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~ 342 (459)
+ ..+++|++|++++ +.++.++ .+..+++|++|++++| +++.+|...+ +++|++|++++++
T Consensus 343 ~----~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 343 F----ENLDKLEVLDLSY-NHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp G----TTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred h----cCcccCCEEECCC-CcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 3 2678999999999 6788774 8899999999999994 7888886443 6899999999865
No 32
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=2.4e-17 Score=167.12 Aligned_cols=193 Identities=20% Similarity=0.213 Sum_probs=112.4
Q ss_pred CCCCcCceEEeCCCCCCCCCccc-----eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceE
Q 039619 87 VSVTLKDPEVLDCPVCYEPLTIP-----VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHL 161 (459)
Q Consensus 87 lp~~L~~L~l~~c~~l~~l~~lp-----L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L 161 (459)
+|++|++|+++++ .+..+| |++|++++ +.++.++ ..+++|++|+++++ .++.+|..+.+ ++|++|
T Consensus 89 ~~~~L~~L~l~~n----~l~~lp~~~~~L~~L~l~~-n~l~~l~---~~~~~L~~L~L~~n-~l~~lp~~~~l-~~L~~L 158 (454)
T 1jl5_A 89 LPPHLESLVASCN----SLTELPELPQSLKSLLVDN-NNLKALS---DLPPLLEYLGVSNN-QLEKLPELQNS-SFLKII 158 (454)
T ss_dssp CCTTCSEEECCSS----CCSSCCCCCTTCCEEECCS-SCCSCCC---SCCTTCCEEECCSS-CCSSCCCCTTC-TTCCEE
T ss_pred CcCCCCEEEccCC----cCCccccccCCCcEEECCC-CccCccc---CCCCCCCEEECcCC-CCCCCcccCCC-CCCCEE
Confidence 4567777777763 444444 77777766 3555555 23357777777664 45556655566 677777
Q ss_pred EeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccc
Q 039619 162 YIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYK 241 (459)
Q Consensus 162 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~ 241 (459)
+++++ .++.+|..+ .+|++|+++++ .+..+| .++.+++|++|++++| .++.+|. .+++|++|+++++.+..
T Consensus 159 ~l~~N-~l~~lp~~~---~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~--~~~~L~~L~l~~n~l~~ 229 (454)
T 1jl5_A 159 DVDNN-SLKKLPDLP---PSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN-SLKKLPD--LPLSLESIVAGNNILEE 229 (454)
T ss_dssp ECCSS-CCSCCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-CCSSCCC--CCTTCCEEECCSSCCSS
T ss_pred ECCCC-cCcccCCCc---ccccEEECcCC-cCCcCc-cccCCCCCCEEECCCC-cCCcCCC--CcCcccEEECcCCcCCc
Confidence 77764 455555432 46777777766 455565 4666777777777664 3444443 34567777777666553
Q ss_pred cccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccC
Q 039619 242 PLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCC 317 (459)
Q Consensus 242 ~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~ 317 (459)
.. .+..+++|++|++++ +.+..+|. .+++|++|++++ +.++.+|. .+++|++|++++
T Consensus 230 lp------~~~~l~~L~~L~l~~---N~l~~l~~-------~~~~L~~L~l~~-N~l~~l~~--~~~~L~~L~ls~ 286 (454)
T 1jl5_A 230 LP------ELQNLPFLTTIYADN---NLLKTLPD-------LPPSLEALNVRD-NYLTDLPE--LPQSLTFLDVSE 286 (454)
T ss_dssp CC------CCTTCTTCCEEECCS---SCCSSCCS-------CCTTCCEEECCS-SCCSCCCC--CCTTCCEEECCS
T ss_pred cc------ccCCCCCCCEEECCC---CcCCcccc-------cccccCEEECCC-CcccccCc--ccCcCCEEECcC
Confidence 22 356666777777766 34445553 335666666665 44555541 124555555555
No 33
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=7.6e-17 Score=162.89 Aligned_cols=213 Identities=15% Similarity=0.190 Sum_probs=131.7
Q ss_pred eeEEEEecCCCCcccc-CCccccccCcEEEeecCCCceeec--cccccccccceEEeecccCCccccc-cCCCCCcccEE
Q 039619 110 VYQLQIIPCPSLTSLW-SKSELPATLENIYVDRCSKLAFLS--LRGNLSKALKHLYIISCSNLESIAE-GLDDNTSLETM 185 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp-~~~~~~~~L~~L~l~~c~~l~~l~--~~~~lp~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L 185 (459)
++.|++++ +.++.++ .....+++|++|+++++ .+..++ ....+ ++|++|+++++ .++.++. .+..+++|++|
T Consensus 66 l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 66 TRLLNLHE-NQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGL-ANLNTLELFDN-RLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp CSEEECCS-CCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTC-SSCCEEECCSS-CCSSCCTTTSCSCSSCCEE
T ss_pred CcEEEccC-CcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCC-ccCCEEECCCC-cCCeeCHhHhhccccCcee
Confidence 55566655 3444443 22344457777777764 455554 22455 67777777764 5555544 46667777777
Q ss_pred eeccccCcccCcc-cCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEE
Q 039619 186 EIFICQNLKALPN-GLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTL 262 (459)
Q Consensus 186 ~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l 262 (459)
+++++ .+..++. .+..+++|++|++++|+.+..++.. ..+++|++|+++++.++... .+..+++|++|++
T Consensus 142 ~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~L 214 (440)
T 3zyj_A 142 WLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP------NLTPLIKLDELDL 214 (440)
T ss_dssp ECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC------CCTTCSSCCEEEC
T ss_pred eCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc------ccCCCcccCEEEC
Confidence 77776 3444443 4566777777777776666666653 33667777777776666433 4567777777777
Q ss_pred eCCcCCCceec-CCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEE
Q 039619 263 FGGECCGVVSF-PPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLE 337 (459)
Q Consensus 263 ~~~~c~~l~~l-~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~ 337 (459)
++ +.+..+ |..+ ..+++|++|++++ +.++.++ .+..+++|++|+++++ +++.++...+ +++|+.|+
T Consensus 215 s~---N~l~~~~~~~~----~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 285 (440)
T 3zyj_A 215 SG---NHLSAIRPGSF----QGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIH 285 (440)
T ss_dssp TT---SCCCEECTTTT----TTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEE
T ss_pred CC---CccCccChhhh----ccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEE
Confidence 77 344444 3333 2566777777777 5666665 5667777777777774 5666665333 56777777
Q ss_pred eeCCc
Q 039619 338 IYGCP 342 (459)
Q Consensus 338 i~~c~ 342 (459)
++++|
T Consensus 286 L~~Np 290 (440)
T 3zyj_A 286 LHHNP 290 (440)
T ss_dssp CCSSC
T ss_pred cCCCC
Confidence 77654
No 34
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=5.6e-17 Score=164.43 Aligned_cols=213 Identities=17% Similarity=0.201 Sum_probs=117.6
Q ss_pred eeEEEEecCCCCcccc-CCccccccCcEEEeecCCCceeec--cccccccccceEEeecccCCcccccc-CCCCCcccEE
Q 039619 110 VYQLQIIPCPSLTSLW-SKSELPATLENIYVDRCSKLAFLS--LRGNLSKALKHLYIISCSNLESIAEG-LDDNTSLETM 185 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp-~~~~~~~~L~~L~l~~c~~l~~l~--~~~~lp~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L 185 (459)
+++|++++ +.++.++ .....+++|++|+++++ .+..++ ....+ ++|++|+++++ .+..+|.. +..+++|++|
T Consensus 77 l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 77 TRYLNLME-NNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGL-ASLNTLELFDN-WLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp CSEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTC-TTCCEEECCSS-CCSBCCTTTSSSCTTCCEE
T ss_pred ccEEECcC-CcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCc-ccCCEEECCCC-cCCccChhhhcccCCCCEE
Confidence 45555544 2343332 22334456666666663 444444 22445 66666666664 34555433 5556666666
Q ss_pred eeccccCcccCcc-cCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEE
Q 039619 186 EIFICQNLKALPN-GLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTL 262 (459)
Q Consensus 186 ~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l 262 (459)
+++++ .+..+|. .+..+++|++|++++|+.++.++.. ..+++|++|+++++.++... .+..+++|++|++
T Consensus 153 ~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~L 225 (452)
T 3zyi_A 153 WLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP------NLTPLVGLEELEM 225 (452)
T ss_dssp ECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC------CCTTCTTCCEEEC
T ss_pred ECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc------cccccccccEEEC
Confidence 66665 3444433 4556666666666666666665543 23566666666666555433 4556666666666
Q ss_pred eCCcCCCceec-CCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEE
Q 039619 263 FGGECCGVVSF-PPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLE 337 (459)
Q Consensus 263 ~~~~c~~l~~l-~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~ 337 (459)
++ +.+..+ |..+ ..+++|++|++++ +.++.++ .+..+++|++|+++++ +++.++...+ +++|+.|+
T Consensus 226 s~---N~l~~~~~~~~----~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 226 SG---NHFPEIRPGSF----HGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELH 296 (452)
T ss_dssp TT---SCCSEECGGGG----TTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEE
T ss_pred cC---CcCcccCcccc----cCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEE
Confidence 66 233333 2222 2455666666666 4555554 5566666777777664 5566654332 45666776
Q ss_pred eeCCc
Q 039619 338 IYGCP 342 (459)
Q Consensus 338 i~~c~ 342 (459)
++++|
T Consensus 297 L~~Np 301 (452)
T 3zyi_A 297 LHHNP 301 (452)
T ss_dssp CCSSC
T ss_pred ccCCC
Confidence 66654
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.75 E-value=1e-16 Score=166.32 Aligned_cols=191 Identities=18% Similarity=0.195 Sum_probs=137.6
Q ss_pred cceEEeecccCCccccccC-CCCCcccEEeeccccCcccCc---ccCCCCCCccEEeeccCCCCccccC----CCCCCCc
Q 039619 158 LKHLYIISCSNLESIAEGL-DDNTSLETMEIFICQNLKALP---NGLRNLTSLQYLLIQDCPTIGSFTA----NCFPTNL 229 (459)
Q Consensus 158 L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~~l~~lp---~~l~~l~~L~~L~l~~c~~l~~lp~----~~~~~~L 229 (459)
|++|+++++ .+..+|..+ ..+++|++|++++|.....+| ..++.+++|++|++++| .++.++. ...+++|
T Consensus 312 L~~L~l~~n-~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L 389 (549)
T 2z81_A 312 VKRITVENS-KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNL 389 (549)
T ss_dssp CCEEEEESS-CCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTC
T ss_pred ceEEEeccC-ccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCC
Confidence 444444442 244455444 368899999999985444443 34678999999999986 4655542 2457899
Q ss_pred cEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCC
Q 039619 230 ASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTS 309 (459)
Q Consensus 230 ~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~ 309 (459)
++|++++++++. . +. .+..+++|++|++++ +.+..+|.. .+++|++|++++ +.++.++ ..+++
T Consensus 390 ~~L~Ls~N~l~~-l-p~---~~~~~~~L~~L~Ls~---N~l~~l~~~------~~~~L~~L~Ls~-N~l~~~~--~~l~~ 452 (549)
T 2z81_A 390 TSLDISRNTFHP-M-PD---SCQWPEKMRFLNLSS---TGIRVVKTC------IPQTLEVLDVSN-NNLDSFS--LFLPR 452 (549)
T ss_dssp CEEECTTCCCCC-C-CS---CCCCCTTCCEEECTT---SCCSCCCTT------SCTTCSEEECCS-SCCSCCC--CCCTT
T ss_pred CEEECCCCCCcc-C-Ch---hhcccccccEEECCC---CCcccccch------hcCCceEEECCC-CChhhhc--ccCCh
Confidence 999999988874 3 44 678899999999999 467777763 457999999999 5777654 57889
Q ss_pred CCEEeccCCCCCCcCCCCCCCCCcceEEeeCCchhHHhhhcCcCCccccccCCCeEEeCceeee
Q 039619 310 FESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCHYVI 373 (459)
Q Consensus 310 L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c~~L~~~~~~~~~~~~~~i~~i~~l~~~~~~~l 373 (459)
|++|++++| +++.+|..+.+++|++|+++++. ++... ...+.....+..+.+.++.-.
T Consensus 453 L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N~-l~~~~----~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 453 LQELYISRN-KLKTLPDASLFPVLLVMKISRNQ-LKSVP----DGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp CCEEECCSS-CCSSCCCGGGCTTCCEEECCSSC-CCCCC----TTGGGGCTTCCEEECCSSCBC
T ss_pred hcEEECCCC-ccCcCCCcccCccCCEEecCCCc-cCCcC----HHHHhcCcccCEEEecCCCcc
Confidence 999999996 78889986668999999999984 22211 112345667788888776543
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.75 E-value=1.6e-16 Score=169.21 Aligned_cols=303 Identities=12% Similarity=0.020 Sum_probs=148.2
Q ss_pred CCCCCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCC
Q 039619 21 SSRFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCP 100 (459)
Q Consensus 21 ~~~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~ 100 (459)
...+++|++|++.++... .........+++|+.|.+.++..-..... .....+.... ...+ ++|++|+++++.
T Consensus 268 ~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--~~lp~i~~~~---~~~l-~~L~~L~l~~n~ 340 (680)
T 1ziw_A 268 FAWLPQLEYFFLEYNNIQ-HLFSHSLHGLFNVRYLNLKRSFTKQSISL--ASLPKIDDFS---FQWL-KCLEHLNMEDND 340 (680)
T ss_dssp TTTCTTCCEEECCSCCBS-EECTTTTTTCTTCCEEECTTCBCCC--------CCEECTTT---TTTC-TTCCEEECCSCC
T ss_pred ccCcccccEeeCCCCccC-ccChhhhcCCCCccEEeccchhhhccccc--ccccccChhh---cccC-CCCCEEECCCCc
Confidence 446899999999876443 22233345688899998876431100000 0000111000 1122 367777776642
Q ss_pred CC----CCCCccc-eeEEEEecCC-CCccccCCc-c--ccccCcEEEeecCCCceeec--cccccccccceEEeecccCC
Q 039619 101 VC----YEPLTIP-VYQLQIIPCP-SLTSLWSKS-E--LPATLENIYVDRCSKLAFLS--LRGNLSKALKHLYIISCSNL 169 (459)
Q Consensus 101 ~l----~~l~~lp-L~~L~l~~c~-~l~~lp~~~-~--~~~~L~~L~l~~c~~l~~l~--~~~~lp~~L~~L~l~~c~~l 169 (459)
-- ..+..++ |++|++++|. .+..++... . ..++|+.|+++++ .+..++ ....+ ++|++|+++++...
T Consensus 341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l-~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-KISKIESDAFSWL-GHLEVLDLGLNEIG 418 (680)
T ss_dssp BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS-CCCEECTTTTTTC-TTCCEEECCSSCCE
T ss_pred cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC-CCCeEChhhhhCC-CCCCEEeCCCCcCc
Confidence 10 0012222 6777776543 122333111 0 0135666666664 333332 12345 66666666664332
Q ss_pred cccc-ccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCC--CccccCC-CCCCCccEEEEecCcccccccc
Q 039619 170 ESIA-EGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPT--IGSFTAN-CFPTNLASVCIDYEKIYKPLIL 245 (459)
Q Consensus 170 ~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~--l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~ 245 (459)
..+| ..+..+++|++|++++|......+..+..+++|+.|+++++.. +...|.. ..+++|+.|+++++.++... +
T Consensus 419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~-~ 497 (680)
T 1ziw_A 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN-D 497 (680)
T ss_dssp EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCC-T
T ss_pred cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCC-h
Confidence 3343 3455666666666666633222334455566666666655431 1222322 33556666666665555433 2
Q ss_pred cCCCCCCCCCccCEEEEeCCcCCCceecCCCC-----CCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCC
Q 039619 246 ERGPGLHRFTSVRLLTLFGGECCGVVSFPPEK-----DTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCC 318 (459)
Q Consensus 246 ~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~-----~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c 318 (459)
. .+..+++|++|++++ +.+..++... ......+++|++|++++ +.++.+| .+..+++|++|++++
T Consensus 498 ~---~~~~l~~L~~L~Ls~---N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~- 569 (680)
T 1ziw_A 498 D---MLEGLEKLEILDLQH---NNLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEVFKDLFELKIIDLGL- 569 (680)
T ss_dssp T---TTTTCTTCCEEECCS---SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred h---hhccccccCEEeCCC---CCccccchhhccCCcchhhcCCCCCCEEECCC-CCCCCCCHHHcccccCcceeECCC-
Confidence 2 455666666666665 2333321110 00001345666666666 4566665 355666666666655
Q ss_pred CCCCcCCCCCC--CCCcceEEeeCC
Q 039619 319 PKLQKFPDNGL--PTSLLRLEIYGC 341 (459)
Q Consensus 319 ~~l~~lp~~~l--~~sL~~L~i~~c 341 (459)
++++.+|...+ +++|+.|+++++
T Consensus 570 N~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 570 NNLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCCCcCCHhHhCCCCCCCEEECCCC
Confidence 35555554322 456666666665
No 37
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=3.6e-17 Score=156.98 Aligned_cols=214 Identities=18% Similarity=0.167 Sum_probs=157.7
Q ss_pred eeEEEEecCCCCccccCC-ccccccCcEEEeecCCCceee---c-cccccccccceEEeecccCCccccccCCCCCcccE
Q 039619 110 VYQLQIIPCPSLTSLWSK-SELPATLENIYVDRCSKLAFL---S-LRGNLSKALKHLYIISCSNLESIAEGLDDNTSLET 184 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~c~~l~~l---~-~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~ 184 (459)
|++|++++ ..++.+|.. ...+++|++|+++++ .+..+ + ....+ ++|++|+++++ .+..+|..+..+++|++
T Consensus 30 l~~L~L~~-n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~-~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 30 ATRLELES-NKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGT-TSLKYLDLSFN-GVITMSSNFLGLEQLEH 105 (306)
T ss_dssp CCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSC-SCCCEEECCSC-SEEEEEEEEETCTTCCE
T ss_pred CCEEECCC-CccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccc-cccCEEECCCC-ccccChhhcCCCCCCCE
Confidence 66666665 346666643 345569999999885 55544 2 22346 89999999985 57778888889999999
Q ss_pred EeeccccCcccCcc--cCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccc-cccccCCCCCCCCCccCE
Q 039619 185 MEIFICQNLKALPN--GLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYK-PLILERGPGLHRFTSVRL 259 (459)
Q Consensus 185 L~l~~c~~l~~lp~--~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~-~~~~~~~~~l~~l~~L~~ 259 (459)
|+++++ .+..++. .+..+++|++|++++|. +...+.. ..+++|++|+++++.+.. .. +. .+..+++|++
T Consensus 106 L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~---~~~~l~~L~~ 179 (306)
T 2z66_A 106 LDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFL-PD---IFTELRNLTF 179 (306)
T ss_dssp EECTTS-EEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEE-CS---CCTTCTTCCE
T ss_pred EECCCC-cccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccc-hh---HHhhCcCCCE
Confidence 999987 5555553 67889999999998875 4433322 447899999999988765 22 34 6789999999
Q ss_pred EEEeCCcCCCceec-CCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCC---CCCCCc
Q 039619 260 LTLFGGECCGVVSF-PPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDN---GLPTSL 333 (459)
Q Consensus 260 L~l~~~~c~~l~~l-~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~---~l~~sL 333 (459)
|++++ +.+..+ |..+ ..+++|++|++++ +.++.++ .+..+++|++|++++| .+...+.. .++++|
T Consensus 180 L~Ls~---n~l~~~~~~~~----~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L 250 (306)
T 2z66_A 180 LDLSQ---CQLEQLSPTAF----NSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSL 250 (306)
T ss_dssp EECTT---SCCCEECTTTT----TTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCCCCCTTC
T ss_pred EECCC---CCcCCcCHHHh----cCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCC-CCcccCHHHHHhhhccC
Confidence 99998 355555 4444 3678999999999 6788877 6788999999999997 45544332 235699
Q ss_pred ceEEeeCCc
Q 039619 334 LRLEIYGCP 342 (459)
Q Consensus 334 ~~L~i~~c~ 342 (459)
++|++++++
T Consensus 251 ~~L~L~~N~ 259 (306)
T 2z66_A 251 AFLNLTQND 259 (306)
T ss_dssp CEEECTTCC
T ss_pred CEEEccCCC
Confidence 999999875
No 38
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.74 E-value=4.6e-17 Score=167.95 Aligned_cols=98 Identities=9% Similarity=-0.078 Sum_probs=50.7
Q ss_pred CCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCCC
Q 039619 24 FPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVCY 103 (459)
Q Consensus 24 f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l~ 103 (459)
+++|++|+++++.... ........+++|+.|.+.++..... ... ....++ +|++|+++++
T Consensus 20 ~~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~-----------~~~---~~~~l~-~L~~L~Ls~N---- 79 (520)
T 2z7x_B 20 SQKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQYL-----------DIS---VFKFNQ-ELEYLDLSHN---- 79 (520)
T ss_dssp CTTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSCCCEE-----------EGG---GGTTCT-TCCEEECCSS----
T ss_pred cccccEEECCCCcccc-cChhhccccccccEEecCCCccCCc-----------ChH---Hhhccc-CCCEEecCCC----
Confidence 4788888888765422 2212234578888888887653210 000 011222 5666666663
Q ss_pred CCCccc------eeEEEEecCCCCcc--ccCCccccccCcEEEeecC
Q 039619 104 EPLTIP------VYQLQIIPCPSLTS--LWSKSELPATLENIYVDRC 142 (459)
Q Consensus 104 ~l~~lp------L~~L~l~~c~~l~~--lp~~~~~~~~L~~L~l~~c 142 (459)
.+..+| |++|+++++ .++. +|...+.+++|++|+++++
T Consensus 80 ~l~~lp~~~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 80 KLVKISCHPTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTT 125 (520)
T ss_dssp CCCEEECCCCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred ceeecCccccCCccEEeccCC-ccccccchhhhccCCcceEEEecCc
Confidence 344444 666666553 3332 3334444456666666553
No 39
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=3.8e-17 Score=151.08 Aligned_cols=208 Identities=15% Similarity=0.168 Sum_probs=138.0
Q ss_pred CCCCccccCCccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCCccccc-cCCCCCcccEEeeccccCcc
Q 039619 118 CPSLTSLWSKSELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESIAE-GLDDNTSLETMEIFICQNLK 194 (459)
Q Consensus 118 c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~ 194 (459)
|..++.+|. ++.+|++|+++++ .++.++. ...+ ++|++|+++++..++.++. .+..+++|++|++++|+.++
T Consensus 20 c~~l~~ip~---~~~~l~~L~l~~n-~l~~i~~~~~~~l-~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~ 94 (239)
T 2xwt_C 20 CKDIQRIPS---LPPSTQTLKLIET-HLRTIPSHAFSNL-PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94 (239)
T ss_dssp ECSCSSCCC---CCTTCCEEEEESC-CCSEECTTTTTTC-TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC
T ss_pred ccCccccCC---CCCcccEEEEeCC-cceEECHHHccCC-CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee
Confidence 444666663 4556777777663 5666653 2455 6777777776544666654 45667777777777655666
Q ss_pred cCcc-cCCCCCCccEEeeccCCCCccccCCCCCCCcc---EEEEecC-cccccccccCCCCCCCCCccC-EEEEeCCcCC
Q 039619 195 ALPN-GLRNLTSLQYLLIQDCPTIGSFTANCFPTNLA---SVCIDYE-KIYKPLILERGPGLHRFTSVR-LLTLFGGECC 268 (459)
Q Consensus 195 ~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~---~L~l~~~-~l~~~~~~~~~~~l~~l~~L~-~L~l~~~~c~ 268 (459)
.++. .+..+++|++|+++++ .++.+|....+++|+ +|+++++ .++... +. .+..+++|+ +|++++ +
T Consensus 95 ~i~~~~f~~l~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~-~~---~~~~l~~L~~~L~l~~---n 166 (239)
T 2xwt_C 95 YIDPDALKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMTSIP-VN---AFQGLCNETLTLKLYN---N 166 (239)
T ss_dssp EECTTSEECCTTCCEEEEEEE-CCCSCCCCTTCCBCCSEEEEEEESCTTCCEEC-TT---TTTTTBSSEEEEECCS---C
T ss_pred EcCHHHhCCCCCCCEEeCCCC-CCccccccccccccccccEEECCCCcchhhcC-cc---cccchhcceeEEEcCC---C
Confidence 5553 4556777777777665 345555433445555 7777776 665433 22 577888999 999988 4
Q ss_pred CceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCC-CCCCEEeccCCCCCCcCCCCCCCCCcceEEeeCCchh
Q 039619 269 GVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENL-TSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCPLI 344 (459)
Q Consensus 269 ~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l-~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c~~L 344 (459)
.+..+|... ...++|++|+++++..++.++ .+..+ ++|++|++++ +.++.+|.. .+++|+.|++.++..|
T Consensus 167 ~l~~i~~~~----~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 167 GFTSVQGYA----FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp CCCEECTTT----TTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC---
T ss_pred CCcccCHhh----cCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCceeeccCccCC
Confidence 677887754 133689999999844688887 67788 8999999988 578888875 4588999998887643
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.74 E-value=4.4e-16 Score=169.95 Aligned_cols=121 Identities=15% Similarity=0.103 Sum_probs=62.9
Q ss_pred CCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceec-CCCCCCC
Q 039619 204 TSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSF-PPEKDTG 280 (459)
Q Consensus 204 ~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l-~~~~~~~ 280 (459)
++|+.|+++++. +..++.. ..+++|+.|+++++.+.... +. .+..+++|++|++++ +.+..+ +..+
T Consensus 266 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~---~~~~l~~L~~L~Ls~---N~l~~~~~~~~--- 334 (844)
T 3j0a_A 266 SSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINKIA-DE---AFYGLDNLQVLNLSY---NLLGELYSSNF--- 334 (844)
T ss_dssp SCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCCCCEEC-TT---TTTTCSSCCEEEEES---CCCSCCCSCSC---
T ss_pred CCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCcCCCCC-hH---HhcCCCCCCEEECCC---CCCCccCHHHh---
Confidence 345555555542 2233222 23556666666665554433 22 455666666666665 233333 2222
Q ss_pred ccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEEeeCC
Q 039619 281 KALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGC 341 (459)
Q Consensus 281 ~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c 341 (459)
..+++|++|++++ +.+..++ .+..+++|++|++++| .++.++. +++|+.|+++++
T Consensus 335 -~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~---~~~L~~L~l~~N 391 (844)
T 3j0a_A 335 -YGLPKVAYIDLQK-NHIAIIQDQTFKFLEKLQTLDLRDN-ALTTIHF---IPSIPDIFLSGN 391 (844)
T ss_dssp -SSCTTCCEEECCS-CCCCCCCSSCSCSCCCCCEEEEETC-CSCCCSS---CCSCSEEEEESC
T ss_pred -cCCCCCCEEECCC-CCCCccChhhhcCCCCCCEEECCCC-CCCcccC---CCCcchhccCCC
Confidence 2455666666666 4555555 4556666666666663 4444442 455666666655
No 41
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=3.6e-16 Score=163.76 Aligned_cols=249 Identities=18% Similarity=0.225 Sum_probs=173.7
Q ss_pred CCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCCCCC
Q 039619 26 KRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVCYEP 105 (459)
Q Consensus 26 ~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l~~l 105 (459)
++++|++.+..-. ..... .+++|+.|.+.++..- .+ ...+++|++|++++| .+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~---l~~~L~~L~L~~N~l~-----------~l--------p~~l~~L~~L~Ls~N----~l 93 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDC---LPAHITTLVIPDNNLT-----------SL--------PALPPELRTLEVSGN----QL 93 (622)
T ss_dssp CCCEEECCSSCCS-CCCSC---CCTTCSEEEECSCCCS-----------CC--------CCCCTTCCEEEECSC----CC
T ss_pred CCcEEEecCCCcC-ccChh---hCCCCcEEEecCCCCC-----------CC--------CCcCCCCCEEEcCCC----cC
Confidence 4677777665432 22211 2367888888866421 01 113458888888885 45
Q ss_pred Cccc-----eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCC
Q 039619 106 LTIP-----VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNT 180 (459)
Q Consensus 106 ~~lp-----L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~ 180 (459)
+.+| |++|++++ +.++.+|. .+++|++|+++++ .++.+|. .+ ++|++|++++| .+..+|.. ++
T Consensus 94 ~~lp~~l~~L~~L~Ls~-N~l~~l~~---~l~~L~~L~L~~N-~l~~lp~--~l-~~L~~L~Ls~N-~l~~l~~~---~~ 161 (622)
T 3g06_A 94 TSLPVLPPGLLELSIFS-NPLTHLPA---LPSGLCKLWIFGN-QLTSLPV--LP-PGLQELSVSDN-QLASLPAL---PS 161 (622)
T ss_dssp SCCCCCCTTCCEEEECS-CCCCCCCC---CCTTCCEEECCSS-CCSCCCC--CC-TTCCEEECCSS-CCSCCCCC---CT
T ss_pred CcCCCCCCCCCEEECcC-CcCCCCCC---CCCCcCEEECCCC-CCCcCCC--CC-CCCCEEECcCC-cCCCcCCc---cC
Confidence 5555 88888877 56777773 5568888888874 5777764 34 78888888885 56666653 46
Q ss_pred cccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEE
Q 039619 181 SLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLL 260 (459)
Q Consensus 181 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L 260 (459)
+|+.|+++++ .+..+| ..+++|+.|++++| .++.+|. .+++|+.|+++++.++... ..+++|+.|
T Consensus 162 ~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N-~l~~l~~--~~~~L~~L~L~~N~l~~l~--------~~~~~L~~L 226 (622)
T 3g06_A 162 ELCKLWAYNN-QLTSLP---MLPSGLQELSVSDN-QLASLPT--LPSELYKLWAYNNRLTSLP--------ALPSGLKEL 226 (622)
T ss_dssp TCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCSSCC--------CCCTTCCEE
T ss_pred CCCEEECCCC-CCCCCc---ccCCCCcEEECCCC-CCCCCCC--ccchhhEEECcCCcccccC--------CCCCCCCEE
Confidence 7888888886 666676 35688888888775 4666654 4678888888887776432 235788888
Q ss_pred EEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCCCCcCCCC-CCCCCcceEEee
Q 039619 261 TLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPDN-GLPTSLLRLEIY 339 (459)
Q Consensus 261 ~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~lp~~-~l~~sL~~L~i~ 339 (459)
++++ +.+..+|. .+++|++|++++ +.++.+|. .+++|++|++++| +++.+|.. .-+++|+.|+++
T Consensus 227 ~Ls~---N~L~~lp~-------~l~~L~~L~Ls~-N~L~~lp~--~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 227 IVSG---NRLTSLPV-------LPSELKELMVSG-NRLTSLPM--LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLE 292 (622)
T ss_dssp ECCS---SCCSCCCC-------CCTTCCEEECCS-SCCSCCCC--CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECC
T ss_pred EccC---CccCcCCC-------CCCcCcEEECCC-CCCCcCCc--ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEec
Confidence 8887 46777773 567889999988 68888874 5678888999885 67778752 126788889988
Q ss_pred CCc
Q 039619 340 GCP 342 (459)
Q Consensus 340 ~c~ 342 (459)
+++
T Consensus 293 ~N~ 295 (622)
T 3g06_A 293 GNP 295 (622)
T ss_dssp SCC
T ss_pred CCC
Confidence 886
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.74 E-value=3.8e-16 Score=166.39 Aligned_cols=310 Identities=9% Similarity=0.016 Sum_probs=211.7
Q ss_pred CCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCC--
Q 039619 25 PKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVC-- 102 (459)
Q Consensus 25 ~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l-- 102 (459)
++|++|++.++... .........+++|+.|.+.++.... +... ....+ ++|++|+++++..-
T Consensus 248 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~---~~~~l-~~L~~L~L~~~~~~~~ 311 (680)
T 1ziw_A 248 TNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQH-----------LFSH---SLHGL-FNVRYLNLKRSFTKQS 311 (680)
T ss_dssp SCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSCCBSE-----------ECTT---TTTTC-TTCCEEECTTCBCCC-
T ss_pred CCCCEEECCCCCcC-ccCcccccCcccccEeeCCCCccCc-----------cChh---hhcCC-CCccEEeccchhhhcc
Confidence 45999999887542 2223334568999999999775321 1111 11233 38999998764210
Q ss_pred ------C-----CCCccc-eeEEEEecCCCCccccC-CccccccCcEEEeecCC-Cceeeccc----cccccccceEEee
Q 039619 103 ------Y-----EPLTIP-VYQLQIIPCPSLTSLWS-KSELPATLENIYVDRCS-KLAFLSLR----GNLSKALKHLYII 164 (459)
Q Consensus 103 ------~-----~l~~lp-L~~L~l~~c~~l~~lp~-~~~~~~~L~~L~l~~c~-~l~~l~~~----~~lp~~L~~L~l~ 164 (459)
. .+..++ |++|+++++ .++.+++ ....+++|++|+++++. .+..++.. ... ++|+.|+++
T Consensus 312 ~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~-~~L~~L~L~ 389 (680)
T 1ziw_A 312 ISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLT 389 (680)
T ss_dssp -----CCEECTTTTTTCTTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTT-SCCCEEECT
T ss_pred cccccccccChhhcccCCCCCEEECCCC-ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccccc-CcCceEECC
Confidence 0 223344 999999885 4555442 34556799999999864 24444421 112 589999999
Q ss_pred cccCCccccccCCCCCcccEEeeccccCcccCc-ccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccc
Q 039619 165 SCSNLESIAEGLDDNTSLETMEIFICQNLKALP-NGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYK 241 (459)
Q Consensus 165 ~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~ 241 (459)
++......|..+..+++|++|+++++.....+| ..+..+++|++|++++|. +..++.. ..+++|++|+++++.+..
T Consensus 390 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~ 468 (680)
T 1ziw_A 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKN 468 (680)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBC
T ss_pred CCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccc
Confidence 975444446788899999999999985444565 567889999999999875 4455433 447899999999966642
Q ss_pred --cccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC----------CCCCCCC
Q 039619 242 --PLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS----------SIENLTS 309 (459)
Q Consensus 242 --~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~----------~l~~l~~ 309 (459)
.. +. .+..+++|+.|++++ +.+..++... ...+++|++|++++ +.++.++ .+..+++
T Consensus 469 ~~~~-p~---~~~~l~~L~~L~Ls~---N~l~~i~~~~---~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~~~~l~~ 537 (680)
T 1ziw_A 469 VDSS-PS---PFQPLRNLTILDLSN---NNIANINDDM---LEGLEKLEILDLQH-NNLARLWKHANPGGPIYFLKGLSH 537 (680)
T ss_dssp TTCS-SC---TTTTCTTCCEEECCS---SCCCCCCTTT---TTTCTTCCEEECCS-SCCGGGGSTTSTTSCCCTTTTCTT
T ss_pred cccC-Cc---ccccCCCCCEEECCC---CCCCcCChhh---hccccccCEEeCCC-CCccccchhhccCCcchhhcCCCC
Confidence 22 33 678999999999998 4676776542 13678999999999 6777653 2678999
Q ss_pred CCEEeccCCCCCCcCCCCCC--CCCcceEEeeCCchhHHhhhcCcCCccccccCCCeEEeCce
Q 039619 310 FESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCH 370 (459)
Q Consensus 310 L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~~L~~~~~~~~~~~~~~i~~i~~l~~~~~ 370 (459)
|++|+++++ +++.+|...+ +++|+.|+++++. ++... ...+..+..+..+.+.++
T Consensus 538 L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~----~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 538 LHILNLESN-GFDEIPVEVFKDLFELKIIDLGLNN-LNTLP----ASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCC----TTTTTTCTTCCEEECTTS
T ss_pred CCEEECCCC-CCCCCCHHHcccccCcceeECCCCC-CCcCC----HhHhCCCCCCCEEECCCC
Confidence 999999985 7888886433 6899999998874 22211 112344567777888776
No 43
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.74 E-value=4.5e-16 Score=157.71 Aligned_cols=51 Identities=25% Similarity=0.340 Sum_probs=26.2
Q ss_pred CCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEEeeCC
Q 039619 285 ASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGC 341 (459)
Q Consensus 285 ~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c 341 (459)
++|++|++++ +.++.+|. .+++|++|++++| +++.+|. .+++|++|+++++
T Consensus 317 ~~L~~L~Ls~-N~l~~lp~--~~~~L~~L~L~~N-~l~~lp~--~l~~L~~L~L~~N 367 (454)
T 1jl5_A 317 PSLEELNVSN-NKLIELPA--LPPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYN 367 (454)
T ss_dssp TTCCEEECCS-SCCSCCCC--CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS
T ss_pred CcCCEEECCC-Cccccccc--cCCcCCEEECCCC-ccccccc--hhhhccEEECCCC
Confidence 4555555555 44554441 1355555555553 4455554 3455566655554
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=1.1e-16 Score=162.30 Aligned_cols=213 Identities=17% Similarity=0.174 Sum_probs=172.4
Q ss_pred CCCCCcCceEEeCCCCCCCCCcc--------c-eeEEEEecCCCCcccc-CCccccccCcEEEeecCCCceeecc--ccc
Q 039619 86 PVSVTLKDPEVLDCPVCYEPLTI--------P-VYQLQIIPCPSLTSLW-SKSELPATLENIYVDRCSKLAFLSL--RGN 153 (459)
Q Consensus 86 ~lp~~L~~L~l~~c~~l~~l~~l--------p-L~~L~l~~c~~l~~lp-~~~~~~~~L~~L~l~~c~~l~~l~~--~~~ 153 (459)
.+|+++++|+++++ .+..+ + |++|+++++ .++.++ .....+++|++|+++++ .++.++. ...
T Consensus 72 ~~~~~l~~L~L~~n----~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 145 (452)
T 3zyi_A 72 GIPSNTRYLNLMEN----NIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEY 145 (452)
T ss_dssp CCCTTCSEEECCSS----CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSS
T ss_pred CCCCCccEEECcCC----cCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC-cCCccChhhhcc
Confidence 46679999999995 44444 3 999999884 666665 33455679999999995 6777773 356
Q ss_pred cccccceEEeecccCCccccc-cCCCCCcccEEeeccccCcccCcc-cCCCCCCccEEeeccCCCCccccCCCCCCCccE
Q 039619 154 LSKALKHLYIISCSNLESIAE-GLDDNTSLETMEIFICQNLKALPN-GLRNLTSLQYLLIQDCPTIGSFTANCFPTNLAS 231 (459)
Q Consensus 154 lp~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~ 231 (459)
+ ++|++|+++++ .++.+|. .+..+++|++|++++|..++.++. .+..+++|++|++++| .+..+|....+++|++
T Consensus 146 l-~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~ 222 (452)
T 3zyi_A 146 L-SKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEE 222 (452)
T ss_dssp C-TTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCE
T ss_pred c-CCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccccccccccccE
Confidence 7 89999999996 5677754 688899999999999988888876 4788999999999886 5777887677899999
Q ss_pred EEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCC-CCCCCccCCCCcceEEeecCCCCCccC--CCCCCC
Q 039619 232 VCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPP-EKDTGKALPASLKHLSIWNFPNLERIS--SIENLT 308 (459)
Q Consensus 232 L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~-~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~ 308 (459)
|++++|.+.... +. .+.++++|++|++++ +.+..++. .+ ..+++|+.|++++ +.++.++ .+..++
T Consensus 223 L~Ls~N~l~~~~-~~---~~~~l~~L~~L~L~~---n~l~~~~~~~~----~~l~~L~~L~L~~-N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 223 LEMSGNHFPEIR-PG---SFHGLSSLKKLWVMN---SQVSLIERNAF----DGLASLVELNLAH-NNLSSLPHDLFTPLR 290 (452)
T ss_dssp EECTTSCCSEEC-GG---GGTTCTTCCEEECTT---SCCCEECTTTT----TTCTTCCEEECCS-SCCSCCCTTSSTTCT
T ss_pred EECcCCcCcccC-cc---cccCccCCCEEEeCC---CcCceECHHHh----cCCCCCCEEECCC-CcCCccChHHhcccc
Confidence 999998887655 55 789999999999999 45555543 33 3678999999999 7899988 678899
Q ss_pred CCCEEeccCCC
Q 039619 309 SFESLQLCCCP 319 (459)
Q Consensus 309 ~L~~L~l~~c~ 319 (459)
+|++|++++++
T Consensus 291 ~L~~L~L~~Np 301 (452)
T 3zyi_A 291 YLVELHLHHNP 301 (452)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEccCCC
Confidence 99999999864
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=161.56 Aligned_cols=238 Identities=16% Similarity=0.167 Sum_probs=145.3
Q ss_pred CCCCcCceEEeCCCCCCCCCccc---------eeEEEEecCCCCccccC-CccccccCcEEEeecCCCceeecc--cccc
Q 039619 87 VSVTLKDPEVLDCPVCYEPLTIP---------VYQLQIIPCPSLTSLWS-KSELPATLENIYVDRCSKLAFLSL--RGNL 154 (459)
Q Consensus 87 lp~~L~~L~l~~c~~l~~l~~lp---------L~~L~l~~c~~l~~lp~-~~~~~~~L~~L~l~~c~~l~~l~~--~~~l 154 (459)
++++|++|+++++ .+..+| |++|+++++ .++.+++ ....+++|++|+++++ .++.++. .+.+
T Consensus 50 ~~~~L~~L~l~~n----~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l 123 (353)
T 2z80_A 50 LTEAVKSLDLSNN----RITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPL 123 (353)
T ss_dssp CCTTCCEEECTTS----CCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTC
T ss_pred ccccCcEEECCCC----cCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCC
Confidence 4457888888774 333333 777777664 5555542 2444567777777774 5566653 2456
Q ss_pred ccccceEEeecccCCccccc--cCCCCCcccEEeeccccCcccC-cccCCCCCCccEEeeccCCCCccc-cCC-CCCCCc
Q 039619 155 SKALKHLYIISCSNLESIAE--GLDDNTSLETMEIFICQNLKAL-PNGLRNLTSLQYLLIQDCPTIGSF-TAN-CFPTNL 229 (459)
Q Consensus 155 p~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l-p~~-~~~~~L 229 (459)
++|++|+++++ .++.+|. .+..+++|++|++++|..+..+ +..+..+++|++|++++|. +..+ |.. ..+++|
T Consensus 124 -~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 124 -SSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNV 200 (353)
T ss_dssp -TTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEE
T ss_pred -ccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHHHhccccC
Confidence 77777777774 5566655 5667777777777777555554 3456677777777777754 3333 322 346677
Q ss_pred cEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCC-----ccC-C
Q 039619 230 ASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLE-----RIS-S 303 (459)
Q Consensus 230 ~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~-----~l~-~ 303 (459)
++|+++++.+.... .. .+..+++|++|++++ +.+..++...-........++.+++++ ..+. .+| .
T Consensus 201 ~~L~l~~n~l~~~~-~~---~~~~~~~L~~L~L~~---n~l~~~~~~~l~~~~~~~~l~~l~L~~-~~l~~~~l~~l~~~ 272 (353)
T 2z80_A 201 SHLILHMKQHILLL-EI---FVDVTSSVECLELRD---TDLDTFHFSELSTGETNSLIKKFTFRN-VKITDESLFQVMKL 272 (353)
T ss_dssp EEEEEECSCSTTHH-HH---HHHHTTTEEEEEEES---CBCTTCCCC------CCCCCCEEEEES-CBCCHHHHHHHHHH
T ss_pred CeecCCCCccccch-hh---hhhhcccccEEECCC---Cccccccccccccccccchhhcccccc-ccccCcchhhhHHH
Confidence 77777776654322 11 233467777777777 233333221100001344566666666 3333 244 5
Q ss_pred CCCCCCCCEEeccCCCCCCcCCCCC--CCCCcceEEeeCCc
Q 039619 304 IENLTSFESLQLCCCPKLQKFPDNG--LPTSLLRLEIYGCP 342 (459)
Q Consensus 304 l~~l~~L~~L~l~~c~~l~~lp~~~--l~~sL~~L~i~~c~ 342 (459)
+..+++|++|++++| +++.+|... -+++|++|++++++
T Consensus 273 l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 273 LNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred HhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 667889999999985 677888743 26889999998875
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=8e-16 Score=149.21 Aligned_cols=272 Identities=16% Similarity=0.123 Sum_probs=189.9
Q ss_pred CCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCCCCC
Q 039619 26 KRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVCYEP 105 (459)
Q Consensus 26 ~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l~~l 105 (459)
+++.+++.+..- ..+.. ...+.++.|.+.++... .+... ....++ +|++|+++++ .+
T Consensus 32 ~l~~l~~~~~~l-~~lp~---~~~~~l~~L~L~~n~i~-----------~~~~~---~~~~l~-~L~~L~L~~n----~l 88 (330)
T 1xku_A 32 HLRVVQCSDLGL-EKVPK---DLPPDTALLDLQNNKIT-----------EIKDG---DFKNLK-NLHTLILINN----KI 88 (330)
T ss_dssp ETTEEECTTSCC-CSCCC---SCCTTCCEEECCSSCCC-----------CBCTT---TTTTCT-TCCEEECCSS----CC
T ss_pred CCeEEEecCCCc-cccCc---cCCCCCeEEECCCCcCC-----------EeChh---hhccCC-CCCEEECCCC----cC
Confidence 677777765432 22211 12478999999877422 11111 122344 8999999985 33
Q ss_pred Ccc--------c-eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCC--ccc
Q 039619 106 LTI--------P-VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNL--ESI 172 (459)
Q Consensus 106 ~~l--------p-L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l--~~l 172 (459)
..+ + |++|++++ +.++.+|.... ++|++|+++++ .+..++. ...+ ++|++|+++++..- ...
T Consensus 89 ~~~~~~~~~~l~~L~~L~Ls~-n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~ 163 (330)
T 1xku_A 89 SKISPGAFAPLVKLERLYLSK-NQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGL-NQMIVVELGTNPLKSSGIE 163 (330)
T ss_dssp CCBCTTTTTTCTTCCEEECCS-SCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTC-TTCCEEECCSSCCCGGGBC
T ss_pred CeeCHHHhcCCCCCCEEECCC-CcCCccChhhc--ccccEEECCCC-cccccCHhHhcCC-ccccEEECCCCcCCccCcC
Confidence 333 3 99999988 56778884432 69999999985 5666653 3667 89999999986432 134
Q ss_pred cccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCC
Q 039619 173 AEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPG 250 (459)
Q Consensus 173 p~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~ 250 (459)
+..+..+++|++|+++++ .+..+|..+. ++|++|+++++. ++.++.. ..+++|++|+++++.++... +. .
T Consensus 164 ~~~~~~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~---~ 235 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADT-NITTIPQGLP--PSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVD-NG---S 235 (330)
T ss_dssp TTGGGGCTTCCEEECCSS-CCCSCCSSCC--TTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEEC-TT---T
T ss_pred hhhccCCCCcCEEECCCC-ccccCCcccc--ccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeC-hh---h
Confidence 667888999999999997 6777877653 899999999864 5555432 45789999999998887544 33 5
Q ss_pred CCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCC------CCCCCCEEeccCCCCCC
Q 039619 251 LHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIE------NLTSFESLQLCCCPKLQ 322 (459)
Q Consensus 251 l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~------~l~~L~~L~l~~c~~l~ 322 (459)
+..+++|++|++++ +.+..+|..+ ..+++|++|++++ +.++.++ .+. ..+.|+.|++.+++-..
T Consensus 236 ~~~l~~L~~L~L~~---N~l~~lp~~l----~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 236 LANTPHLRELHLNN---NKLVKVPGGL----ADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp GGGSTTCCEEECCS---SCCSSCCTTT----TTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred ccCCCCCCEEECCC---CcCccCChhh----ccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 78899999999999 4777888866 3778999999999 7888887 332 34789999999865321
Q ss_pred -cCCCCCC--CCCcceEEeeCC
Q 039619 323 -KFPDNGL--PTSLLRLEIYGC 341 (459)
Q Consensus 323 -~lp~~~l--~~sL~~L~i~~c 341 (459)
.++...+ ..+++.++++++
T Consensus 308 ~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 308 WEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGSCGGGGTTCCCGGGEEC---
T ss_pred cccCccccccccceeEEEeccc
Confidence 2332222 567888887765
No 47
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.72 E-value=8.2e-17 Score=159.92 Aligned_cols=228 Identities=15% Similarity=0.104 Sum_probs=129.6
Q ss_pred eeEEEEecCCCCccccCC-ccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCCccc-cccCCCCCcccEE
Q 039619 110 VYQLQIIPCPSLTSLWSK-SELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESI-AEGLDDNTSLETM 185 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L 185 (459)
|++|+++++ .++.+++. ...+++|++|+++++ .++.+|. ...+ ++|++|+++++ .+..+ +..+..+++|++|
T Consensus 95 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 170 (390)
T 3o6n_A 95 IQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNT-PKLTTLSMSNN-NLERIEDDTFQATTSLQNL 170 (390)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC-TTCCEEECCSS-CCCBCCTTTTSSCTTCCEE
T ss_pred cCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCC-CCCcEEECCCC-ccCccChhhccCCCCCCEE
Confidence 555555442 23333221 233345555555442 3444442 1334 45555555543 22333 2334445555555
Q ss_pred eeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCC
Q 039619 186 EIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGG 265 (459)
Q Consensus 186 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~ 265 (459)
+++++ .++.++ +..+++|+.|+++++ .+..+ ..+++|++|+++++.+.... ....++|+.|++++
T Consensus 171 ~l~~n-~l~~~~--~~~l~~L~~L~l~~n-~l~~~---~~~~~L~~L~l~~n~l~~~~-------~~~~~~L~~L~l~~- 235 (390)
T 3o6n_A 171 QLSSN-RLTHVD--LSLIPSLFHANVSYN-LLSTL---AIPIAVEELDASHNSINVVR-------GPVNVELTILKLQH- 235 (390)
T ss_dssp ECCSS-CCSBCC--GGGCTTCSEEECCSS-CCSEE---ECCSSCSEEECCSSCCCEEE-------CCCCSSCCEEECCS-
T ss_pred ECCCC-cCCccc--cccccccceeecccc-ccccc---CCCCcceEEECCCCeeeecc-------ccccccccEEECCC-
Confidence 55544 233221 234445555555443 22222 23456777777776665322 13457899999998
Q ss_pred cCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCC-CCCCcceEEeeCCc
Q 039619 266 ECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNG-LPTSLLRLEIYGCP 342 (459)
Q Consensus 266 ~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~-l~~sL~~L~i~~c~ 342 (459)
+.+...+. . ..+++|++|++++ +.++.++ .+..+++|++|++++| +++.++... -+++|++|++++|.
T Consensus 236 --n~l~~~~~-l----~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 236 --NNLTDTAW-L----LNYPGLVEVDLSY-NELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp --SCCCCCGG-G----GGCTTCSEEECCS-SCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC
T ss_pred --CCCcccHH-H----cCCCCccEEECCC-CcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc
Confidence 35555443 2 2678999999999 6777764 7889999999999995 677777532 36899999999985
Q ss_pred hhHHhhhcCcCCccccccCCCeEEeCcee
Q 039619 343 LIEERFEKDKGQYWSLIADIPCVRIDCHY 371 (459)
Q Consensus 343 ~L~~~~~~~~~~~~~~i~~i~~l~~~~~~ 371 (459)
+.... .......++..+.+.++.
T Consensus 307 -l~~~~-----~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 307 -LLHVE-----RNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp -CCCCG-----GGHHHHTTCSEEECCSSC
T ss_pred -ceecC-----ccccccCcCCEEECCCCc
Confidence 22211 122345677788887764
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=1.5e-16 Score=160.73 Aligned_cols=214 Identities=15% Similarity=0.159 Sum_probs=172.4
Q ss_pred CCCCCcCceEEeCCCCCCCCCccc---------eeEEEEecCCCCccccC-CccccccCcEEEeecCCCceeecc--ccc
Q 039619 86 PVSVTLKDPEVLDCPVCYEPLTIP---------VYQLQIIPCPSLTSLWS-KSELPATLENIYVDRCSKLAFLSL--RGN 153 (459)
Q Consensus 86 ~lp~~L~~L~l~~c~~l~~l~~lp---------L~~L~l~~c~~l~~lp~-~~~~~~~L~~L~l~~c~~l~~l~~--~~~ 153 (459)
.+|+++++|+++++ .+..++ |++|+|+++ .++.++. ....+++|++|+++++ .++.++. ...
T Consensus 61 ~~~~~l~~L~L~~n----~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 134 (440)
T 3zyj_A 61 GISTNTRLLNLHEN----QIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVY 134 (440)
T ss_dssp CCCTTCSEEECCSC----CCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCS
T ss_pred CCCCCCcEEEccCC----cCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhc
Confidence 45678999999995 444443 999999884 5766652 3345679999999995 7888773 467
Q ss_pred cccccceEEeecccCCccccc-cCCCCCcccEEeeccccCcccCcc-cCCCCCCccEEeeccCCCCccccCCCCCCCccE
Q 039619 154 LSKALKHLYIISCSNLESIAE-GLDDNTSLETMEIFICQNLKALPN-GLRNLTSLQYLLIQDCPTIGSFTANCFPTNLAS 231 (459)
Q Consensus 154 lp~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~ 231 (459)
+ ++|++|+++++ .+..++. .+..+++|++|++++|..+..++. .+..+++|++|++++| .++.+|....+++|++
T Consensus 135 l-~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~ 211 (440)
T 3zyj_A 135 L-SKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDE 211 (440)
T ss_dssp C-SSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCE
T ss_pred c-ccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCE
Confidence 7 89999999995 5667754 688899999999999888887775 5788999999999986 6778887677899999
Q ss_pred EEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCC
Q 039619 232 VCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTS 309 (459)
Q Consensus 232 L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~ 309 (459)
|++++|.++... +. .+..+++|++|++++ +.+..++... ...+++|++|++++ +.++.++ .+..+++
T Consensus 212 L~Ls~N~l~~~~-~~---~~~~l~~L~~L~L~~---n~l~~~~~~~---~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 212 LDLSGNHLSAIR-PG---SFQGLMHLQKLWMIQ---SQIQVIERNA---FDNLQSLVEINLAH-NNLTLLPHDLFTPLHH 280 (440)
T ss_dssp EECTTSCCCEEC-TT---TTTTCTTCCEEECTT---CCCCEECTTS---STTCTTCCEEECTT-SCCCCCCTTTTSSCTT
T ss_pred EECCCCccCccC-hh---hhccCccCCEEECCC---CceeEEChhh---hcCCCCCCEEECCC-CCCCccChhHhccccC
Confidence 999998887654 44 789999999999998 4666665432 13678999999999 7899988 6788999
Q ss_pred CCEEeccCCC
Q 039619 310 FESLQLCCCP 319 (459)
Q Consensus 310 L~~L~l~~c~ 319 (459)
|+.|++++++
T Consensus 281 L~~L~L~~Np 290 (440)
T 3zyj_A 281 LERIHLHHNP 290 (440)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEcCCCC
Confidence 9999999865
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.72 E-value=2.6e-16 Score=152.80 Aligned_cols=271 Identities=13% Similarity=0.103 Sum_probs=191.5
Q ss_pred CCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCCCCC
Q 039619 26 KRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVCYEP 105 (459)
Q Consensus 26 ~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l~~l 105 (459)
+++.+++.+..- +.... ..+++++.|.+.++... .+... ....++ +|++|++++| .+
T Consensus 34 ~l~~l~~~~~~l-~~ip~---~~~~~l~~L~l~~n~i~-----------~~~~~---~~~~l~-~L~~L~L~~n----~l 90 (332)
T 2ft3_A 34 HLRVVQCSDLGL-KAVPK---EISPDTTLLDLQNNDIS-----------ELRKD---DFKGLQ-HLYALVLVNN----KI 90 (332)
T ss_dssp ETTEEECCSSCC-SSCCS---CCCTTCCEEECCSSCCC-----------EECTT---TTTTCT-TCCEEECCSS----CC
T ss_pred cCCEEECCCCCc-cccCC---CCCCCCeEEECCCCcCC-----------ccCHh---HhhCCC-CCcEEECCCC----cc
Confidence 577777765432 22211 23578999999877522 11111 122344 8999999995 34
Q ss_pred Ccc--------c-eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCCc---c
Q 039619 106 LTI--------P-VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLE---S 171 (459)
Q Consensus 106 ~~l--------p-L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~---~ 171 (459)
..+ + |++|++++ +.++.+|.... ++|++|+++++ .++.++. ...+ ++|++|+++++. ++ .
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l-~~L~~L~l~~n~-l~~~~~ 164 (332)
T 2ft3_A 91 SKIHEKAFSPLRKLQKLYISK-NHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGL-RNMNCIEMGGNP-LENSGF 164 (332)
T ss_dssp CEECGGGSTTCTTCCEEECCS-SCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSC-SSCCEEECCSCC-CBGGGS
T ss_pred CccCHhHhhCcCCCCEEECCC-CcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCC-ccCCEEECCCCc-cccCCC
Confidence 444 3 99999988 56778885433 69999999985 6777763 3677 899999999864 43 3
Q ss_pred ccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCC
Q 039619 172 IAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGP 249 (459)
Q Consensus 172 lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~ 249 (459)
.+..+..+ +|++|+++++ .+..+|..+. ++|++|+++++ .++.++.. ..+++|++|+++++.+.... +.
T Consensus 165 ~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~--- 235 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEA-KLTGIPKDLP--ETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIE-NG--- 235 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSS-BCSSCCSSSC--SSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-TT---
T ss_pred CcccccCC-ccCEEECcCC-CCCccCcccc--CCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCcCC-hh---
Confidence 45667767 9999999998 5777887654 79999999886 45565533 45789999999998887654 33
Q ss_pred CCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCC------CCCCCEEeccCCCCC
Q 039619 250 GLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIEN------LTSFESLQLCCCPKL 321 (459)
Q Consensus 250 ~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~------l~~L~~L~l~~c~~l 321 (459)
.+..+++|++|++++ +.+..+|..+ ..+++|++|++++ +.++.++ .+.. .++|+.|++.+++..
T Consensus 236 ~~~~l~~L~~L~L~~---N~l~~lp~~l----~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 236 SLSFLPTLRELHLDN---NKLSRVPAGL----PDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp GGGGCTTCCEEECCS---SCCCBCCTTG----GGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred HhhCCCCCCEEECCC---CcCeecChhh----hcCccCCEEECCC-CCCCccChhHccccccccccccccceEeecCccc
Confidence 578899999999998 4777888876 3788999999999 7888887 3322 477999999997633
Q ss_pred C-cCCCCCC--CCCcceEEeeCCc
Q 039619 322 Q-KFPDNGL--PTSLLRLEIYGCP 342 (459)
Q Consensus 322 ~-~lp~~~l--~~sL~~L~i~~c~ 342 (459)
. .++...+ +++|+.++++++.
T Consensus 308 ~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 308 YWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccCcccccccchhhhhhccccc
Confidence 1 3443222 6789999988764
No 50
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.72 E-value=2e-15 Score=164.71 Aligned_cols=144 Identities=13% Similarity=0.137 Sum_probs=64.4
Q ss_pred CcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCcc
Q 039619 180 TSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSV 257 (459)
Q Consensus 180 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L 257 (459)
++|+.|+++++......|..+..+++|+.|+++++. +..++.. ..+++|++|++++|.+.... +. .+..+++|
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~---~~~~l~~L 340 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLGELY-SS---NFYGLPKV 340 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEECTTTTTTCSSCCEEEEESCCCSCCC-SC---SCSSCTTC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCChHHhcCCCCCCEEECCCCCCCccC-HH---HhcCCCCC
Confidence 344555554442222223344455555555555432 3333221 22455555555555444332 22 44555555
Q ss_pred CEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEE
Q 039619 258 RLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLE 337 (459)
Q Consensus 258 ~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~ 337 (459)
+.|++++ +.+..++... ...+++|+.|++++ +.++.++ .+++|+.|+++++ ++..+|. ...+++.|+
T Consensus 341 ~~L~L~~---N~i~~~~~~~---~~~l~~L~~L~Ls~-N~l~~i~---~~~~L~~L~l~~N-~l~~l~~--~~~~l~~L~ 407 (844)
T 3j0a_A 341 AYIDLQK---NHIAIIQDQT---FKFLEKLQTLDLRD-NALTTIH---FIPSIPDIFLSGN-KLVTLPK--INLTANLIH 407 (844)
T ss_dssp CEEECCS---CCCCCCCSSC---SCSCCCCCEEEEET-CCSCCCS---SCCSCSEEEEESC-CCCCCCC--CCTTCCEEE
T ss_pred CEEECCC---CCCCccChhh---hcCCCCCCEEECCC-CCCCccc---CCCCcchhccCCC-Ccccccc--cccccceee
Confidence 5555555 2333333321 01345555555555 3444332 2445555555553 3444443 234455555
Q ss_pred eeCC
Q 039619 338 IYGC 341 (459)
Q Consensus 338 i~~c 341 (459)
++++
T Consensus 408 ls~N 411 (844)
T 3j0a_A 408 LSEN 411 (844)
T ss_dssp CCSC
T ss_pred cccC
Confidence 5443
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=7.3e-16 Score=161.42 Aligned_cols=231 Identities=21% Similarity=0.223 Sum_probs=182.0
Q ss_pred CCCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCCCCC
Q 039619 23 RFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDCPVC 102 (459)
Q Consensus 23 ~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c~~l 102 (459)
-+++|++|++.++... .... .+++|+.|.+.++... .++ ..+++|++|+++++
T Consensus 59 l~~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-----------~lp--------~~l~~L~~L~Ls~N--- 111 (622)
T 3g06_A 59 LPAHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-----------SLP--------VLPPGLLELSIFSN--- 111 (622)
T ss_dssp CCTTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-----------CCC--------CCCTTCCEEEECSC---
T ss_pred hCCCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-----------cCC--------CCCCCCCEEECcCC---
Confidence 3579999999887542 2222 5789999999987521 011 13469999999995
Q ss_pred CCCCccc-----eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCC
Q 039619 103 YEPLTIP-----VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLD 177 (459)
Q Consensus 103 ~~l~~lp-----L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~ 177 (459)
.+..+| |+.|++++ +.++.+|. .+++|++|++++| .+..+|. .+ ++|+.|+++++ .++.+| .
T Consensus 112 -~l~~l~~~l~~L~~L~L~~-N~l~~lp~---~l~~L~~L~Ls~N-~l~~l~~--~~-~~L~~L~L~~N-~l~~l~---~ 178 (622)
T 3g06_A 112 -PLTHLPALPSGLCKLWIFG-NQLTSLPV---LPPGLQELSVSDN-QLASLPA--LP-SELCKLWAYNN-QLTSLP---M 178 (622)
T ss_dssp -CCCCCCCCCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CC-TTCCEEECCSS-CCSCCC---C
T ss_pred -cCCCCCCCCCCcCEEECCC-CCCCcCCC---CCCCCCEEECcCC-cCCCcCC--cc-CCCCEEECCCC-CCCCCc---c
Confidence 555555 99999988 56888884 3479999999996 6777763 33 89999999985 677887 4
Q ss_pred CCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCcc
Q 039619 178 DNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSV 257 (459)
Q Consensus 178 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L 257 (459)
.+++|+.|++++| .+..+|.. +++|+.|++++| .++.+|. .+++|++|++++|.++... ..+++|
T Consensus 179 ~~~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N-~l~~l~~--~~~~L~~L~Ls~N~L~~lp--------~~l~~L 243 (622)
T 3g06_A 179 LPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN-RLTSLPA--LPSGLKELIVSGNRLTSLP--------VLPSEL 243 (622)
T ss_dssp CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSSCCC--CCTTCCEEECCSSCCSCCC--------CCCTTC
T ss_pred cCCCCcEEECCCC-CCCCCCCc---cchhhEEECcCC-cccccCC--CCCCCCEEEccCCccCcCC--------CCCCcC
Confidence 4789999999997 67777753 578999999885 5677764 4689999999999887432 467899
Q ss_pred CEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCC
Q 039619 258 RLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCP 319 (459)
Q Consensus 258 ~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~ 319 (459)
+.|++++ +.+..+|. .+++|+.|++++ +.++.+| .+..+++|+.|++++|+
T Consensus 244 ~~L~Ls~---N~L~~lp~-------~~~~L~~L~Ls~-N~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 244 KELMVSG---NRLTSLPM-------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CEEECCS---SCCSCCCC-------CCTTCCEEECCS-SCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred cEEECCC---CCCCcCCc-------ccccCcEEeCCC-CCCCcCCHHHhhccccCEEEecCCC
Confidence 9999999 47888887 568999999999 6899999 88999999999999975
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.71 E-value=5.9e-17 Score=156.16 Aligned_cols=219 Identities=13% Similarity=0.081 Sum_probs=167.6
Q ss_pred eeEEEEecCCCCc--cccCCccccccCcEEEeecCCCce-eec-cccccccccceEEeecccCCccccccCCCCCcccEE
Q 039619 110 VYQLQIIPCPSLT--SLWSKSELPATLENIYVDRCSKLA-FLS-LRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETM 185 (459)
Q Consensus 110 L~~L~l~~c~~l~--~lp~~~~~~~~L~~L~l~~c~~l~-~l~-~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 185 (459)
+++|+++++.--. .+|.....+++|++|++++++.+. .+| ..+.+ ++|++|+++++.....+|..+..+++|++|
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC-TTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcC-CCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 8999999854433 677677777899999999645555 555 33678 999999999975444788889999999999
Q ss_pred eeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCC-CCccEEEEecCcccccccccCCCCCCCCCccCEEEEe
Q 039619 186 EIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFP-TNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLF 263 (459)
Q Consensus 186 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~-~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~ 263 (459)
+++++.-...+|..+..+++|++|+++++..-..+|.. ..+ ++|++|+++++.+.... +. .+..++ |++|+++
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~-~~---~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI-PP---TFANLN-LAFVDLS 205 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC-CG---GGGGCC-CSEEECC
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC-Ch---HHhCCc-ccEEECc
Confidence 99998544478888999999999999987543366654 334 49999999998887554 44 667776 9999999
Q ss_pred CCcCCCce-ecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCC-CCCCCcceEEeeC
Q 039619 264 GGECCGVV-SFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCPKLQKFPDN-GLPTSLLRLEIYG 340 (459)
Q Consensus 264 ~~~c~~l~-~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~-~l~~sL~~L~i~~ 340 (459)
+ +.+. ..|..+ ..+++|+.|++++ +.++..+ .+..+++|++|++++|.--..+|.. .-+++|++|++++
T Consensus 206 ~---N~l~~~~~~~~----~~l~~L~~L~L~~-N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 206 R---NMLEGDASVLF----GSDKNTQKIHLAK-NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp S---SEEEECCGGGC----CTTSCCSEEECCS-SEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred C---CcccCcCCHHH----hcCCCCCEEECCC-CceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence 8 3444 344444 3678999999999 6666544 7778899999999996543366652 2268999999999
Q ss_pred Cc
Q 039619 341 CP 342 (459)
Q Consensus 341 c~ 342 (459)
+.
T Consensus 278 N~ 279 (313)
T 1ogq_A 278 NN 279 (313)
T ss_dssp SE
T ss_pred Cc
Confidence 85
No 53
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.71 E-value=1.4e-15 Score=158.53 Aligned_cols=152 Identities=18% Similarity=0.206 Sum_probs=120.8
Q ss_pred CCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccC----CCCCCCccEEEEecCcccccccccCCCCCC
Q 039619 177 DDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTA----NCFPTNLASVCIDYEKIYKPLILERGPGLH 252 (459)
Q Consensus 177 ~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~----~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~ 252 (459)
..+++|++|+++++.-...+|..+..+++|++|+++++ .++.++. ...+++|++|+++++.+.... +. ..+.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~--~~~~ 425 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHA-YD--RTCA 425 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC-SS--CCCC
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCcc-Ch--hhhc
Confidence 67889999999998555557888899999999999986 5665542 245799999999998887633 22 2477
Q ss_pred CCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCCCC--
Q 039619 253 RFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCPKLQKFPDNGL-- 329 (459)
Q Consensus 253 ~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l-- 329 (459)
.+++|++|++++ |.-...+|.. .+++|++|++++ +.++.+| .+..+++|++|+++++ +++.+|...+
T Consensus 426 ~l~~L~~L~l~~--n~l~~~~~~~------l~~~L~~L~L~~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~ 495 (562)
T 3a79_B 426 WAESILVLNLSS--NMLTGSVFRC------LPPKVKVLDLHN-NRIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDR 495 (562)
T ss_dssp CCTTCCEEECCS--SCCCGGGGSS------CCTTCSEEECCS-SCCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTT
T ss_pred CcccCCEEECCC--CCCCcchhhh------hcCcCCEEECCC-CcCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhc
Confidence 899999999999 4433445543 337999999999 6999999 7779999999999995 7888987423
Q ss_pred CCCcceEEeeCCc
Q 039619 330 PTSLLRLEIYGCP 342 (459)
Q Consensus 330 ~~sL~~L~i~~c~ 342 (459)
+++|+.|+++++|
T Consensus 496 l~~L~~L~l~~N~ 508 (562)
T 3a79_B 496 LTSLQYIWLHDNP 508 (562)
T ss_dssp CTTCCCEECCSCC
T ss_pred CCCCCEEEecCCC
Confidence 6899999999976
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=3.8e-16 Score=148.29 Aligned_cols=205 Identities=17% Similarity=0.249 Sum_probs=141.2
Q ss_pred CCCccccCCccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCCccc-cccCCCCCcccEEeeccccCccc
Q 039619 119 PSLTSLWSKSELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESI-AEGLDDNTSLETMEIFICQNLKA 195 (459)
Q Consensus 119 ~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~ 195 (459)
..++.+|. ..+++|++|+++++ .++.++. ...+ ++|++|+++++ .++.+ |..+..+++|++|+++++..+..
T Consensus 21 ~~l~~ip~--~~~~~l~~L~l~~n-~i~~~~~~~~~~~-~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~ 95 (285)
T 1ozn_A 21 QGLQAVPV--GIPAASQRIFLHGN-RISHVPAASFRAC-RNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRS 95 (285)
T ss_dssp SCCSSCCT--TCCTTCSEEECTTS-CCCEECTTTTTTC-TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCC
T ss_pred CCcccCCc--CCCCCceEEEeeCC-cCCccCHHHcccC-CCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccc
Confidence 45666662 24557888888774 5666652 3556 77888888775 45555 56677788888888887754665
Q ss_pred C-cccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCcee
Q 039619 196 L-PNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVS 272 (459)
Q Consensus 196 l-p~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~ 272 (459)
+ |..+..+++|++|+++++. +..++.. ..+++|++|+++++.+.... +. .+..+++|++|++++ +.+..
T Consensus 96 ~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~---~~~~l~~L~~L~l~~---n~l~~ 167 (285)
T 1ozn_A 96 VDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALP-DD---TFRDLGNLTHLFLHG---NRISS 167 (285)
T ss_dssp CCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCC-TT---TTTTCTTCCEEECCS---SCCCE
T ss_pred cCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccC-Hh---HhccCCCccEEECCC---Ccccc
Confidence 5 5567778888888887754 4444332 34678888888887766443 22 467888888888888 46666
Q ss_pred cCCC-CCCCccCCCCcceEEeecCCCCCcc-C-CCCCCCCCCEEeccCCCCCCcCCCC--CCCCCcceEEeeCCc
Q 039619 273 FPPE-KDTGKALPASLKHLSIWNFPNLERI-S-SIENLTSFESLQLCCCPKLQKFPDN--GLPTSLLRLEIYGCP 342 (459)
Q Consensus 273 l~~~-~~~~~~~~~~L~~L~l~~c~~l~~l-~-~l~~l~~L~~L~l~~c~~l~~lp~~--~l~~sL~~L~i~~c~ 342 (459)
++.. + ..+++|++|++++ +.++.+ + .+..+++|++|++++| .++.++.. .-+++|+.|++++++
T Consensus 168 ~~~~~~----~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 168 VPERAF----RGLHSLDRLLLHQ-NRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp ECTTTT----TTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred cCHHHh----cCccccCEEECCC-CcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence 6653 3 2567888888888 567766 3 7788888999999885 66666642 225788888888875
No 55
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=2.7e-16 Score=165.04 Aligned_cols=248 Identities=15% Similarity=0.070 Sum_probs=158.4
Q ss_pred CcCceEEeCCCCCCCCCccc---------eeEEEEecCCCCccccCC-ccccccCcEEEeecCCCceeecc--ccccccc
Q 039619 90 TLKDPEVLDCPVCYEPLTIP---------VYQLQIIPCPSLTSLWSK-SELPATLENIYVDRCSKLAFLSL--RGNLSKA 157 (459)
Q Consensus 90 ~L~~L~l~~c~~l~~l~~lp---------L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~ 157 (459)
+|++|+++++ .+..+| |++|++++| .++.+++. ...+++|++|+++++ .+..+|. .+.+ ++
T Consensus 76 ~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l-~~ 148 (597)
T 3oja_B 76 QVELLNLNDL----QIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNT-PK 148 (597)
T ss_dssp CCSEEECTTS----CCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC-TT
T ss_pred CCcEEECCCC----CCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccC-CC
Confidence 7888888875 333332 888888774 45555533 355568888888875 5667763 3566 78
Q ss_pred cceEEeecccCCccc-cccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCC------------------CCc
Q 039619 158 LKHLYIISCSNLESI-AEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCP------------------TIG 218 (459)
Q Consensus 158 L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~------------------~l~ 218 (459)
|++|+++++ .+..+ |..+..+++|++|+++++ .+..++ +..+++|+.|+++++. .+.
T Consensus 149 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~ 224 (597)
T 3oja_B 149 LTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 224 (597)
T ss_dssp CCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTS-CCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCC
T ss_pred CCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCC-CCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCccc
Confidence 888888876 34444 456777888888888876 444432 2334444444444321 222
Q ss_pred cccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCC
Q 039619 219 SFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNL 298 (459)
Q Consensus 219 ~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l 298 (459)
.++. ..+++|+.|+++++.++++. .+..+++|+.|++++ |.-....|..+ ..+++|+.|++++ +.+
T Consensus 225 ~~~~-~~~~~L~~L~L~~n~l~~~~------~l~~l~~L~~L~Ls~--N~l~~~~~~~~----~~l~~L~~L~Ls~-N~l 290 (597)
T 3oja_B 225 VVRG-PVNVELTILKLQHNNLTDTA------WLLNYPGLVEVDLSY--NELEKIMYHPF----VKMQRLERLYISN-NRL 290 (597)
T ss_dssp EEEC-SCCSCCCEEECCSSCCCCCG------GGGGCTTCSEEECCS--SCCCEEESGGG----TTCSSCCEEECTT-SCC
T ss_pred cccc-ccCCCCCEEECCCCCCCCCh------hhccCCCCCEEECCC--CccCCCCHHHh----cCccCCCEEECCC-CCC
Confidence 2322 23456777777777776544 567788888888888 33333335444 2677888888888 678
Q ss_pred CccC-CCCCCCCCCEEeccCCCCCCcCCCC-CCCCCcceEEeeCCchhHHhhhcCcCCccccccCCCeEEeCcee
Q 039619 299 ERIS-SIENLTSFESLQLCCCPKLQKFPDN-GLPTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCHY 371 (459)
Q Consensus 299 ~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~-~l~~sL~~L~i~~c~~L~~~~~~~~~~~~~~i~~i~~l~~~~~~ 371 (459)
+.++ ....+++|++|++++| .+..+|.. +-+++|+.|++++|..-. .....+..+..+.+.++.
T Consensus 291 ~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l~~--------~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 291 VALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIVT--------LKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCCC--------CCCCTTCCCSEEECCSSC
T ss_pred CCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCCCCC--------cChhhcCCCCEEEeeCCC
Confidence 8888 6677888888988885 56667642 125788888888886311 123344566677776554
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=1.6e-15 Score=144.01 Aligned_cols=194 Identities=19% Similarity=0.213 Sum_probs=145.9
Q ss_pred eeEEEEecCCCCccccC-CccccccCcEEEeecCCCceeec--cccccccccceEEeecccCCccc-cccCCCCCcccEE
Q 039619 110 VYQLQIIPCPSLTSLWS-KSELPATLENIYVDRCSKLAFLS--LRGNLSKALKHLYIISCSNLESI-AEGLDDNTSLETM 185 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~-~~~~~~~L~~L~l~~c~~l~~l~--~~~~lp~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L 185 (459)
|++|++++ +.++.++. ....+++|++|+++++ .++.++ ....+ ++|++|+++++..++.+ |..+..+++|++|
T Consensus 34 l~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l-~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 34 SQRIFLHG-NRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGL-ALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CSEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTC-TTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred ceEEEeeC-CcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCc-cCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 66666655 44555553 2345568999999885 566663 23567 89999999987657777 6678889999999
Q ss_pred eeccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEe
Q 039619 186 EIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLF 263 (459)
Q Consensus 186 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~ 263 (459)
+++++.-....|..+..+++|++|+++++ .++.++.. ..+++|++|+++++.++... +. .+..+++|++|+++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~---~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVP-ER---AFRGLHSLDRLLLH 185 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEEC-TT---TTTTCTTCCEEECC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccccC-HH---HhcCccccCEEECC
Confidence 99998433333566788999999999886 46666654 44789999999998877543 33 57889999999999
Q ss_pred CCcCCCceec-CCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCC
Q 039619 264 GGECCGVVSF-PPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCP 319 (459)
Q Consensus 264 ~~~c~~l~~l-~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~ 319 (459)
+ + .+..+ |..+ ..+++|++|++++ +.++.++ .+..+++|++|++++++
T Consensus 186 ~--n-~l~~~~~~~~----~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 186 Q--N-RVAHVHPHAF----RDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp S--S-CCCEECTTTT----TTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred C--C-cccccCHhHc----cCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCC
Confidence 9 3 45544 5554 3678999999999 7888888 58889999999999865
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.68 E-value=1.4e-15 Score=158.32 Aligned_cols=230 Identities=16% Similarity=0.170 Sum_probs=167.0
Q ss_pred CCcCceEEeCCCCCCCCCccc-------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceE
Q 039619 89 VTLKDPEVLDCPVCYEPLTIP-------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHL 161 (459)
Q Consensus 89 ~~L~~L~l~~c~~l~~l~~lp-------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L 161 (459)
++|++|+++++ .+..+| |++|++++| .+..+|. . .+++|++|+++++......+. ..+ ++|++|
T Consensus 282 ~~L~~L~l~~~----~l~~l~~~~~~~~L~~L~l~~n-~~~~l~~-~-~l~~L~~L~l~~n~~~~~~~~-~~~-~~L~~L 352 (570)
T 2z63_A 282 TNVSSFSLVSV----TIERVKDFSYNFGWQHLELVNC-KFGQFPT-L-KLKSLKRLTFTSNKGGNAFSE-VDL-PSLEFL 352 (570)
T ss_dssp TTCSEEEEESC----EECSCCBCCSCCCCSEEEEESC-BCSSCCB-C-BCSSCCEEEEESCBSCCBCCC-CBC-TTCCEE
T ss_pred CcccEEEecCc----cchhhhhhhccCCccEEeeccC-cccccCc-c-cccccCEEeCcCCcccccccc-ccC-CCCCEE
Confidence 47888888885 344555 888888875 4557773 3 445899999988754444443 566 889999
Q ss_pred EeecccCCccc---cccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccC-C--CCCCCccEEEEe
Q 039619 162 YIISCSNLESI---AEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTA-N--CFPTNLASVCID 235 (459)
Q Consensus 162 ~l~~c~~l~~l---p~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-~--~~~~~L~~L~l~ 235 (459)
+++++ .+..+ +..+..+++|++|++++| .+..++..+..+++|++|++++|. +...+. . ..+++|++|+++
T Consensus 353 ~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~ 429 (570)
T 2z63_A 353 DLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDIS 429 (570)
T ss_dssp ECCSS-CCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECT
T ss_pred eCcCC-ccCccccccccccccCccCEEECCCC-ccccccccccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCc
Confidence 99886 44443 566777889999999887 455566667788899999998864 333322 2 447889999998
Q ss_pred cCcccccccccCCCCCCCCCccCEEEEeCCcCCCc-eecCCCCCCCccCCCCcceEEeecCCCCCcc-C-CCCCCCCCCE
Q 039619 236 YEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGV-VSFPPEKDTGKALPASLKHLSIWNFPNLERI-S-SIENLTSFES 312 (459)
Q Consensus 236 ~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l-~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~-~l~~l~~L~~ 312 (459)
++.+.... +. .+..+++|++|++++ |.-. ..+|..+ ..+++|++|++++ +.++.+ | .+..+++|++
T Consensus 430 ~n~l~~~~-~~---~~~~l~~L~~L~l~~--n~l~~~~~p~~~----~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 430 HTHTRVAF-NG---IFNGLSSLEVLKMAG--NSFQENFLPDIF----TELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp TSCCEECC-TT---TTTTCTTCCEEECTT--CEEGGGEECSCC----TTCTTCCEEECTT-SCCCEECTTTTTTCTTCCE
T ss_pred CCcccccc-hh---hhhcCCcCcEEECcC--CcCccccchhhh----hcccCCCEEECCC-CccccCChhhhhcccCCCE
Confidence 87776544 44 678899999999998 4332 3577655 3678999999998 567766 4 7888999999
Q ss_pred EeccCCCCCCcCCCCCC--CCCcceEEeeCCc
Q 039619 313 LQLCCCPKLQKFPDNGL--PTSLLRLEIYGCP 342 (459)
Q Consensus 313 L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~ 342 (459)
|++++| +++.++...+ +++|++|++++++
T Consensus 499 L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 499 LNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp EECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 999986 6777765433 6889999998865
No 58
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=1.4e-15 Score=140.52 Aligned_cols=195 Identities=19% Similarity=0.157 Sum_probs=136.9
Q ss_pred eeEEEEecCCCCccccC-CccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCCcccc-ccCCCCCcccEE
Q 039619 110 VYQLQIIPCPSLTSLWS-KSELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESIA-EGLDDNTSLETM 185 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~-~~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L 185 (459)
|++|++++ +.++.++. ....+++|++|+++++..++.++. ...+ ++|++|++++|+.++.++ ..+..+++|++|
T Consensus 33 l~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l-~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 33 TQTLKLIE-THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL-SKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp CCEEEEES-CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESC-TTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred ccEEEEeC-CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCC-cCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 55555555 34555553 234456888888888655777763 3566 788888888766777776 456778888888
Q ss_pred eeccccCcccCcccCCCCCCcc---EEeeccCCCCccccCC--CCCCCcc-EEEEecCcccccccccCCCCCCCCCccCE
Q 039619 186 EIFICQNLKALPNGLRNLTSLQ---YLLIQDCPTIGSFTAN--CFPTNLA-SVCIDYEKIYKPLILERGPGLHRFTSVRL 259 (459)
Q Consensus 186 ~l~~c~~l~~lp~~l~~l~~L~---~L~l~~c~~l~~lp~~--~~~~~L~-~L~l~~~~l~~~~~~~~~~~l~~l~~L~~ 259 (459)
+++++ .++.+|. +..+++|+ +|++++++.++.++.. ..+++|+ +|+++++.++.. +. ..+.. ++|++
T Consensus 111 ~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i--~~--~~~~~-~~L~~ 183 (239)
T 2xwt_C 111 GIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV--QG--YAFNG-TKLDA 183 (239)
T ss_dssp EEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE--CT--TTTTT-CEEEE
T ss_pred eCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc--CH--hhcCC-CCCCE
Confidence 88887 5666775 66777777 8888887577777754 3367888 888888777632 22 13344 78999
Q ss_pred EEEeCCcCCCceecCCCCCCCccCC-CCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCC
Q 039619 260 LTLFGGECCGVVSFPPEKDTGKALP-ASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPK 320 (459)
Q Consensus 260 L~l~~~~c~~l~~l~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~ 320 (459)
|++++ +..+..++... ...+ ++|+.|++++ +.++.+|. ..+++|+.|++.++..
T Consensus 184 L~L~~--n~~l~~i~~~~---~~~l~~~L~~L~l~~-N~l~~l~~-~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 184 VYLNK--NKYLTVIDKDA---FGGVYSGPSLLDVSQ-TSVTALPS-KGLEHLKELIARNTWT 238 (239)
T ss_dssp EECTT--CTTCCEECTTT---TTTCSBCCSEEECTT-CCCCCCCC-TTCTTCSEEECTTC--
T ss_pred EEcCC--CCCcccCCHHH---hhccccCCcEEECCC-CccccCCh-hHhccCceeeccCccC
Confidence 99998 44577776543 0245 7899999998 78888882 2688999999988754
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.67 E-value=5.4e-16 Score=148.75 Aligned_cols=215 Identities=14% Similarity=0.079 Sum_probs=160.5
Q ss_pred CCCCCcCceEEeCCCCCCCCCccc---------eeEEEEecCCCCccc---cCCccccccCcEEEeecCCCceeecc-cc
Q 039619 86 PVSVTLKDPEVLDCPVCYEPLTIP---------VYQLQIIPCPSLTSL---WSKSELPATLENIYVDRCSKLAFLSL-RG 152 (459)
Q Consensus 86 ~lp~~L~~L~l~~c~~l~~l~~lp---------L~~L~l~~c~~l~~l---p~~~~~~~~L~~L~l~~c~~l~~l~~-~~ 152 (459)
.+|++|++|+++++ .+..+| |++|+++++ .++.+ +.....+++|++|+++++ .+..+|. ..
T Consensus 25 ~~~~~l~~L~L~~n----~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~ 98 (306)
T 2z66_A 25 GIPSSATRLELESN----KLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFL 98 (306)
T ss_dssp CCCTTCCEEECCSS----CCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEE
T ss_pred CCCCCCCEEECCCC----ccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCC-ccccChhhcC
Confidence 45678999999985 344444 999999874 55544 223334569999999985 5667763 35
Q ss_pred ccccccceEEeecccCCcccc--ccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCc-cccCC-CCCCC
Q 039619 153 NLSKALKHLYIISCSNLESIA--EGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIG-SFTAN-CFPTN 228 (459)
Q Consensus 153 ~lp~~L~~L~l~~c~~l~~lp--~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~-~lp~~-~~~~~ 228 (459)
.+ ++|++|+++++ .+..++ ..+..+++|++|+++++......+..+..+++|++|+++++.... .+|.. ..+++
T Consensus 99 ~l-~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 99 GL-EQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176 (306)
T ss_dssp TC-TTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred CC-CCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence 67 89999999985 566665 368889999999999985544556678889999999999875332 24543 55889
Q ss_pred ccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCC
Q 039619 229 LASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIEN 306 (459)
Q Consensus 229 L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~ 306 (459)
|++|+++++.++... +. .+..+++|++|++++ +.+..++... ...+++|++|++++ +.+...+ .+..
T Consensus 177 L~~L~Ls~n~l~~~~-~~---~~~~l~~L~~L~L~~---N~l~~~~~~~---~~~l~~L~~L~L~~-N~l~~~~~~~~~~ 245 (306)
T 2z66_A 177 LTFLDLSQCQLEQLS-PT---AFNSLSSLQVLNMSH---NNFFSLDTFP---YKCLNSLQVLDYSL-NHIMTSKKQELQH 245 (306)
T ss_dssp CCEEECTTSCCCEEC-TT---TTTTCTTCCEEECTT---SCCSBCCSGG---GTTCTTCCEEECTT-SCCCBCSSSSCCC
T ss_pred CCEEECCCCCcCCcC-HH---HhcCCCCCCEEECCC---CccCccChhh---ccCcccCCEeECCC-CCCcccCHHHHHh
Confidence 999999998887654 44 678999999999998 4566655421 12578999999999 5676654 7777
Q ss_pred CC-CCCEEeccCCC
Q 039619 307 LT-SFESLQLCCCP 319 (459)
Q Consensus 307 l~-~L~~L~l~~c~ 319 (459)
++ +|++|++++++
T Consensus 246 ~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 246 FPSSLAFLNLTQND 259 (306)
T ss_dssp CCTTCCEEECTTCC
T ss_pred hhccCCEEEccCCC
Confidence 74 99999999864
No 60
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=8.5e-15 Score=143.28 Aligned_cols=216 Identities=18% Similarity=0.151 Sum_probs=160.8
Q ss_pred eeEEEEecCCCCccccCC-ccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCCccc-cccCCCCCcccEE
Q 039619 110 VYQLQIIPCPSLTSLWSK-SELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESI-AEGLDDNTSLETM 185 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L 185 (459)
+++|+|++ +.++.+|+. ...+++|++|+|+++..++.++. ...+ ++++++.+.+++.+..+ |..+..+++|++|
T Consensus 32 l~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L-~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 32 AIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL-PKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp CSEEEEES-CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC-TTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCEEEccC-CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc-hhhhhhhcccCCcccccCchhhhhccccccc
Confidence 67777766 567788743 35567999999999766677763 3466 77777666666788888 4567889999999
Q ss_pred eeccccCcccCcc-cCCCCCCccEEeeccCCCCccccCCC---CCCCccEEEEecCcccccccccCCCCCCCCCccCEEE
Q 039619 186 EIFICQNLKALPN-GLRNLTSLQYLLIQDCPTIGSFTANC---FPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLT 261 (459)
Q Consensus 186 ~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~~---~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~ 261 (459)
+++++ .+..+|. .+....++..|++.++..+..++... ....++.|++++++++... . .....++|++|.
T Consensus 110 ~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~--~---~~f~~~~L~~l~ 183 (350)
T 4ay9_X 110 LISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH--N---SAFNGTQLDELN 183 (350)
T ss_dssp EEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC--T---TSSTTEEEEEEE
T ss_pred ccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC--h---hhccccchhHHh
Confidence 99987 5665554 33456678888888888888887642 3457889999998887433 2 344567899999
Q ss_pred EeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEEeeC
Q 039619 262 LFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYG 340 (459)
Q Consensus 262 l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~ 340 (459)
+.+ ++.++.+|.+. ...+++|++|++++ +.++.+| ...+.+|+.|.+.++.+++.+|...-+++|+.+++.+
T Consensus 184 l~~--~n~l~~i~~~~---f~~l~~L~~LdLs~-N~l~~lp-~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 184 LSD--NNNLEELPNDV---FHGASGPVILDISR-TRIHSLP-SYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp CTT--CTTCCCCCTTT---TTTEECCSEEECTT-SCCCCCC-SSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred hcc--CCcccCCCHHH---hccCcccchhhcCC-CCcCccC-hhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 988 68899998753 12578999999998 7899998 2336788888888888999998743468899988864
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=7.3e-15 Score=138.30 Aligned_cols=192 Identities=22% Similarity=0.315 Sum_probs=123.7
Q ss_pred cCcEEEeecCCCceeeccccccccccceEEeecccCCccccc-cCCCCCcccEEeeccccCcccCccc-CCCCCCccEEe
Q 039619 133 TLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAE-GLDDNTSLETMEIFICQNLKALPNG-LRNLTSLQYLL 210 (459)
Q Consensus 133 ~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~ 210 (459)
+.+.+++++ ..++.+|. .+|+++++|+++++ .+..++. .+..+++|++|+++++ .+..+|.. +..+++|++|+
T Consensus 17 ~~~~l~~~~-~~l~~ip~--~~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSS-KKLTAIPS--NIPADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTT-SCCSSCCS--CCCTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccC-CCCCccCC--CCCCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEE
Confidence 455666655 35555552 23356677777664 4455543 5666777777777765 45555543 35677777777
Q ss_pred eccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcc
Q 039619 211 IQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLK 288 (459)
Q Consensus 211 l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~ 288 (459)
++++ .+..++.. ..+++|++|+++++.++... +. .+..+++|++|++++ +.+..++... ...+++|+
T Consensus 92 l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~---~~~~l~~L~~L~Ls~---n~l~~~~~~~---~~~l~~L~ 160 (270)
T 2o6q_A 92 VTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLP-PR---VFDSLTKLTYLSLGY---NELQSLPKGV---FDKLTSLK 160 (270)
T ss_dssp CCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCC-TT---TTTTCTTCCEEECCS---SCCCCCCTTT---TTTCTTCC
T ss_pred CCCC-cCCcCCHhHcccccCCCEEECCCCccCeeC-HH---HhCcCcCCCEEECCC---CcCCccCHhH---ccCCcccc
Confidence 7664 35555543 23567777777776665433 33 567788888888887 4566666542 12567888
Q ss_pred eEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCCc
Q 039619 289 HLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGCP 342 (459)
Q Consensus 289 ~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~ 342 (459)
+|++++ +.++.++ .+..+++|++|++++| .++.++...+ +++|+.|+++++|
T Consensus 161 ~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 161 ELRLYN-NQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EEECCS-SCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred eeEecC-CcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 888887 6777777 5777888888888885 6777776433 5788888887765
No 62
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.64 E-value=5.7e-15 Score=140.59 Aligned_cols=191 Identities=20% Similarity=0.211 Sum_probs=108.1
Q ss_pred cCcEEEeecCCCceeeccccccccccceEEeecccCCccc-cccCCCCCcccEEeeccccCcccCcccCCCCCCccEEee
Q 039619 133 TLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESI-AEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLI 211 (459)
Q Consensus 133 ~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 211 (459)
+++++++++ ..++.+|. .+|+++++|+++++ .+..+ +..+..+++|++|+++++ .+..++.. ..+++|++|++
T Consensus 11 ~l~~l~~~~-~~l~~ip~--~~~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 11 SHLEVNCDK-RNLTALPP--DLPKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp TCCEEECTT-SCCSSCCS--CCCTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEEC
T ss_pred CccEEECCC-CCCCcCCC--CCCCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEEC
Confidence 455555544 34444442 12245555555553 23333 334555555555555554 34444332 45555555555
Q ss_pred ccCCCCccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceE
Q 039619 212 QDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHL 290 (459)
Q Consensus 212 ~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L 290 (459)
+++ .++.+|.. ..+++|++|++++++++... +. .+..+++|++|++++ +.+..+|... ...+++|+.|
T Consensus 85 s~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~-~~---~~~~l~~L~~L~L~~---N~l~~~~~~~---~~~l~~L~~L 153 (290)
T 1p9a_G 85 SHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLP-LG---ALRGLGELQELYLKG---NELKTLPPGL---LTPTPKLEKL 153 (290)
T ss_dssp CSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCC-SS---TTTTCTTCCEEECTT---SCCCCCCTTT---TTTCTTCCEE
T ss_pred CCC-cCCcCchhhccCCCCCEEECCCCcCcccC-HH---HHcCCCCCCEEECCC---CCCCccChhh---cccccCCCEE
Confidence 543 34444432 33455566666555554332 22 567777888888877 4566666542 0245678888
Q ss_pred EeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC-CCCcceEEeeCCc
Q 039619 291 SIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL-PTSLLRLEIYGCP 342 (459)
Q Consensus 291 ~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l-~~sL~~L~i~~c~ 342 (459)
++++ +.++.++ .+..+++|++|++++ +.++.+|.... .++|+.|+++++|
T Consensus 154 ~L~~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 154 SLAN-NNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ECTT-SCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ECCC-CcCCccCHHHhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCC
Confidence 8887 6777777 456788888888877 46777776433 4578888887765
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=148.92 Aligned_cols=215 Identities=14% Similarity=0.077 Sum_probs=161.5
Q ss_pred CCcCceEEeCCCCCCCCCcc--------c-eeEEEEecCCCCccccCC-ccccccCcEEEeecCCCceeecc---ccccc
Q 039619 89 VTLKDPEVLDCPVCYEPLTI--------P-VYQLQIIPCPSLTSLWSK-SELPATLENIYVDRCSKLAFLSL---RGNLS 155 (459)
Q Consensus 89 ~~L~~L~l~~c~~l~~l~~l--------p-L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~c~~l~~l~~---~~~lp 155 (459)
++|++|+++++ .+..+ + |++|++++ +.++.++.. ...+++|++|+++++ .++.+|. ...+
T Consensus 76 ~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l- 148 (353)
T 2z80_A 76 VNLQALVLTSN----GINTIEEDSFSSLGSLEHLDLSY-NYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHL- 148 (353)
T ss_dssp TTCCEEECTTS----CCCEECTTTTTTCTTCCEEECCS-SCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTC-
T ss_pred CCCCEEECCCC----ccCccCHhhcCCCCCCCEEECCC-CcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccC-
Confidence 48999999985 33333 3 99999988 567777744 455679999999985 6777775 4677
Q ss_pred cccceEEeecccCCccc-cccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEE
Q 039619 156 KALKHLYIISCSNLESI-AEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASV 232 (459)
Q Consensus 156 ~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L 232 (459)
++|++|+++++..+..+ +..+..+++|++|+++++......|..+..+++|++|+++++. ++.++.. ..+++|++|
T Consensus 149 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L 227 (353)
T 2z80_A 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECL 227 (353)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEE
T ss_pred CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEE
Confidence 99999999998777777 4678899999999999985444557888999999999998864 5666643 237899999
Q ss_pred EEecCcccccccccCCCCCCCCCccCEEEEeCCcCCC----ceecCCCCCCCccCCCCcceEEeecCCCCCccC-C-CCC
Q 039619 233 CIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCG----VVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-S-IEN 306 (459)
Q Consensus 233 ~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~----l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~-l~~ 306 (459)
+++++.++... ...-......+.++.+++++ +.- +..+|..+ ..+++|++|++++ +.++.+| . +..
T Consensus 228 ~L~~n~l~~~~-~~~l~~~~~~~~l~~l~L~~--~~l~~~~l~~l~~~l----~~l~~L~~L~Ls~-N~l~~i~~~~~~~ 299 (353)
T 2z80_A 228 ELRDTDLDTFH-FSELSTGETNSLIKKFTFRN--VKITDESLFQVMKLL----NQISGLLELEFSR-NQLKSVPDGIFDR 299 (353)
T ss_dssp EEESCBCTTCC-CC------CCCCCCEEEEES--CBCCHHHHHHHHHHH----HTCTTCCEEECCS-SCCCCCCTTTTTT
T ss_pred ECCCCcccccc-ccccccccccchhhcccccc--ccccCcchhhhHHHH----hcccCCCEEECCC-CCCCccCHHHHhc
Confidence 99998876432 11000123466788999988 321 22344433 2678999999999 7899999 5 589
Q ss_pred CCCCCEEeccCCC
Q 039619 307 LTSFESLQLCCCP 319 (459)
Q Consensus 307 l~~L~~L~l~~c~ 319 (459)
+++|++|++++++
T Consensus 300 l~~L~~L~L~~N~ 312 (353)
T 2z80_A 300 LTSLQKIWLHTNP 312 (353)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCCEEEeeCCC
Confidence 9999999999975
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.63 E-value=1.4e-16 Score=153.33 Aligned_cols=232 Identities=13% Similarity=0.111 Sum_probs=148.4
Q ss_pred CcCceEEeCCCCCCCCCccc------eeEEEEecCCCCc--cccCCcc-------ccccCcEEEeecCCCceeeccc---
Q 039619 90 TLKDPEVLDCPVCYEPLTIP------VYQLQIIPCPSLT--SLWSKSE-------LPATLENIYVDRCSKLAFLSLR--- 151 (459)
Q Consensus 90 ~L~~L~l~~c~~l~~l~~lp------L~~L~l~~c~~l~--~lp~~~~-------~~~~L~~L~l~~c~~l~~l~~~--- 151 (459)
+|++|+++++ .+ .+| |++|++++ ..++ .+|.... .+++|++|+++++.--..+|..
T Consensus 44 ~L~~l~l~~n----~l-~~p~~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 44 SLEYLLKRVD----TE-ADLGQFTDIIKSLSLKR-LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp ECTTHHHHCC----TT-CCCHHHHHHHHHCCCCE-EEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CceeEeeccc----cc-ccHHHHHHHHhhccccc-ccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 5777777774 33 555 66666655 2332 2332222 2458888888886433355532
Q ss_pred cccccccceEEeecccCCccccccCCCC-----CcccEEeeccccCcccCc-ccCCCCCCccEEeeccCCCCcc--cc-C
Q 039619 152 GNLSKALKHLYIISCSNLESIAEGLDDN-----TSLETMEIFICQNLKALP-NGLRNLTSLQYLLIQDCPTIGS--FT-A 222 (459)
Q Consensus 152 ~~lp~~L~~L~l~~c~~l~~lp~~l~~l-----~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~--lp-~ 222 (459)
..+ ++|++|+++++ .+..+|..+..+ ++|++|+++++. +..++ ..+..+++|++|+++++..... ++ .
T Consensus 118 ~~l-~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 118 ATG-PDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp CCS-CCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred hcC-CCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 566 88888888885 455556655555 888888888874 44444 6778888888888888654332 11 2
Q ss_pred C--CCCCCccEEEEecCcccccc-cccCCCCCCCCCccCEEEEeCCcCCCceecC-CCCCCCccCCCCcceEEeecCCCC
Q 039619 223 N--CFPTNLASVCIDYEKIYKPL-ILERGPGLHRFTSVRLLTLFGGECCGVVSFP-PEKDTGKALPASLKHLSIWNFPNL 298 (459)
Q Consensus 223 ~--~~~~~L~~L~l~~~~l~~~~-~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~-~~~~~~~~~~~~L~~L~l~~c~~l 298 (459)
. ..+++|++|+++++.++... .+. +.+..+++|++|++++ +.+...+ ... ...+++|++|++++ +.+
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~~~~l~~L~~L~Ls~---N~l~~~~~~~~---~~~l~~L~~L~Ls~-N~l 265 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCS--ALAAARVQLQGLDLSH---NSLRDAAGAPS---CDWPSQLNSLNLSF-TGL 265 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHH--HHHHTTCCCSEEECTT---SCCCSSCCCSC---CCCCTTCCEEECTT-SCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHH--HHHhcCCCCCEEECCC---CcCCcccchhh---hhhcCCCCEEECCC-Ccc
Confidence 2 34678888888887776311 011 0234678888888888 3454433 111 01467888888888 678
Q ss_pred CccC-CCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEEeeCCc
Q 039619 299 ERIS-SIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCP 342 (459)
Q Consensus 299 ~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c~ 342 (459)
+.+| .+. ++|++|+++++ +++.+|...-+++|++|++++++
T Consensus 266 ~~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 266 KQVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp SSCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred Chhhhhcc--CCceEEECCCC-CCCCChhHhhCCCCCEEeccCCC
Confidence 8888 554 78888888884 67777763336788888887764
No 65
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=1.9e-14 Score=140.80 Aligned_cols=233 Identities=17% Similarity=0.157 Sum_probs=174.8
Q ss_pred EEEEecCCCCccccCCccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCCccccc-cCCCCCcccEEeec
Q 039619 112 QLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESIAE-GLDDNTSLETMEIF 188 (459)
Q Consensus 112 ~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~ 188 (459)
+++.++ ..++++|.. +++++++|++++ +.++.+|. ...+ ++|++|+++++..++.+|. .+.++++|+++.+.
T Consensus 13 ~v~C~~-~~Lt~iP~~--l~~~l~~L~Ls~-N~i~~i~~~~f~~l-~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 13 VFLCQE-SKVTEIPSD--LPRNAIELRFVL-TKLRVIQKGAFSGF-GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EEEEES-TTCCSCCTT--CCTTCSEEEEES-CCCSEECTTSSTTC-TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred EEEecC-CCCCccCcC--cCCCCCEEEccC-CcCCCcCHHHHcCC-CCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 344444 578888843 467999999999 58999984 4678 9999999999876677764 46788999887777
Q ss_pred cccCcccCc-ccCCCCCCccEEeeccCCCCccccCCCC--CCCccEEEEec-CcccccccccCCCCCCCCC-ccCEEEEe
Q 039619 189 ICQNLKALP-NGLRNLTSLQYLLIQDCPTIGSFTANCF--PTNLASVCIDY-EKIYKPLILERGPGLHRFT-SVRLLTLF 263 (459)
Q Consensus 189 ~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~l~~-~~l~~~~~~~~~~~l~~l~-~L~~L~l~ 263 (459)
+++.+..++ ..+..+++|++|+++++ .+..++...+ ..++..|++.+ +.+.... .. .+..+. .++.|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~-~~---~f~~~~~~l~~L~L~ 162 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIE-RN---SFVGLSFESVILWLN 162 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEEC-TT---SSTTSBSSCEEEECC
T ss_pred cCCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhcccccccccc-cc---chhhcchhhhhhccc
Confidence 777888775 56789999999999885 5667766533 45677888877 5665332 22 445554 68899999
Q ss_pred CCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEEeeCC
Q 039619 264 GGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGC 341 (459)
Q Consensus 264 ~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c 341 (459)
+ +.++.++... ....+|++|.+.+++.++.+| .+..+++|++|+++++ +++.+|..+ +.+|+.|.+.++
T Consensus 163 ~---N~i~~i~~~~----f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~-~~~L~~L~~l~~ 233 (350)
T 4ay9_X 163 K---NGIQEIHNSA----FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYG-LENLKKLRARST 233 (350)
T ss_dssp S---SCCCEECTTS----STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSS-CTTCCEEECTTC
T ss_pred c---ccccCCChhh----ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhh-hccchHhhhccC
Confidence 8 6888888765 255789999999889999999 5789999999999995 799999754 589999999998
Q ss_pred chhHHhhhcCcCCccccccCCCeEEeCc
Q 039619 342 PLIEERFEKDKGQYWSLIADIPCVRIDC 369 (459)
Q Consensus 342 ~~L~~~~~~~~~~~~~~i~~i~~l~~~~ 369 (459)
..++... ....+.++..+.+.+
T Consensus 234 ~~l~~lP------~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 234 YNLKKLP------TLEKLVALMEASLTY 255 (350)
T ss_dssp TTCCCCC------CTTTCCSCCEEECSC
T ss_pred CCcCcCC------CchhCcChhhCcCCC
Confidence 8776542 123344555555543
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.62 E-value=2.5e-15 Score=144.96 Aligned_cols=227 Identities=15% Similarity=0.114 Sum_probs=133.8
Q ss_pred CCcCceEEeCCCCCCCCCccc---------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccc
Q 039619 89 VTLKDPEVLDCPVCYEPLTIP---------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALK 159 (459)
Q Consensus 89 ~~L~~L~l~~c~~l~~l~~lp---------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~ 159 (459)
++|++|+++++ .+..++ |++|++++ +.++.+++ ...+++|++|+++++ .++.++ .. ++|+
T Consensus 34 ~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~---~~-~~L~ 102 (317)
T 3o53_A 34 WNVKELDLSGN----PLSQISAADLAPFTKLELLNLSS-NVLYETLD-LESLSTLRTLDLNNN-YVQELL---VG-PSIE 102 (317)
T ss_dssp GGCSEEECTTS----CCCCCCHHHHTTCTTCCEEECTT-SCCEEEEE-ETTCTTCCEEECCSS-EEEEEE---EC-TTCC
T ss_pred CCCCEEECcCC----ccCcCCHHHhhCCCcCCEEECCC-CcCCcchh-hhhcCCCCEEECcCC-cccccc---CC-CCcC
Confidence 36777777764 333322 77777766 34554443 444457778877774 566665 23 6777
Q ss_pred eEEeecccCCccccccCCCCCcccEEeeccccCcccC-cccCCCCCCccEEeeccCCCCccccCC---CCCCCccEEEEe
Q 039619 160 HLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKAL-PNGLRNLTSLQYLLIQDCPTIGSFTAN---CFPTNLASVCID 235 (459)
Q Consensus 160 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~~~L~~L~l~ 235 (459)
+|+++++ .+..++.. .+++|++|+++++ .+..+ +..+..+++|++|+++++. +..++.. ..+++|++|+++
T Consensus 103 ~L~l~~n-~l~~~~~~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 103 TLHAANN-NISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp EEECCSS-CCSEEEEC--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECT
T ss_pred EEECCCC-ccCCcCcc--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECC
Confidence 7777774 45555432 2567777777776 34444 3356667777777777653 4443322 125677777777
Q ss_pred cCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEe
Q 039619 236 YEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQ 314 (459)
Q Consensus 236 ~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~ 314 (459)
++.++... ....+++|++|++++ +.+..+|..+ ..+++|++|++++ +.++.+| .+..+++|+.|+
T Consensus 178 ~N~l~~~~------~~~~l~~L~~L~Ls~---N~l~~l~~~~----~~l~~L~~L~L~~-N~l~~l~~~~~~l~~L~~L~ 243 (317)
T 3o53_A 178 YNFIYDVK------GQVVFAKLKTLDLSS---NKLAFMGPEF----QSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFD 243 (317)
T ss_dssp TSCCCEEE------CCCCCTTCCEEECCS---SCCCEECGGG----GGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEE
T ss_pred CCcCcccc------cccccccCCEEECCC---CcCCcchhhh----cccCcccEEECcC-CcccchhhHhhcCCCCCEEE
Confidence 76665433 334567777777776 3555665544 2566777777777 5677777 666777777777
Q ss_pred ccCCCCC-CcCCCC-CCCCCcceEEeeCCchhH
Q 039619 315 LCCCPKL-QKFPDN-GLPTSLLRLEIYGCPLIE 345 (459)
Q Consensus 315 l~~c~~l-~~lp~~-~l~~sL~~L~i~~c~~L~ 345 (459)
+++++-. ..++.. .-.++|+.|++.+++.++
T Consensus 244 l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp CTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 7775432 122210 013455555555554444
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=4.7e-15 Score=142.44 Aligned_cols=166 Identities=18% Similarity=0.213 Sum_probs=79.4
Q ss_pred cccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEe
Q 039619 156 KALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCID 235 (459)
Q Consensus 156 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~ 235 (459)
++|++|++++| .+..++. +..+++|++|+++++ .+..++ .+..+++|++|++++| .++.++....+++|++|+++
T Consensus 63 ~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~ 137 (308)
T 1h6u_A 63 NNLIGLELKDN-QITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTST-QITDVTPLAGLSNLQVLYLD 137 (308)
T ss_dssp TTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECC
T ss_pred CCCCEEEccCC-cCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCC-CCCCchhhcCCCCCCEEECC
Confidence 44444444443 3333333 444444444444444 233332 3444444555555443 23333333334455555555
Q ss_pred cCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEec
Q 039619 236 YEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQL 315 (459)
Q Consensus 236 ~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l 315 (459)
++.+.... .+..+++|+.|++++ +.+..++. . ..+++|+.|++++ +.++.++.+..+++|++|++
T Consensus 138 ~n~l~~~~------~l~~l~~L~~L~l~~---n~l~~~~~-l----~~l~~L~~L~l~~-n~l~~~~~l~~l~~L~~L~L 202 (308)
T 1h6u_A 138 LNQITNIS------PLAGLTNLQYLSIGN---AQVSDLTP-L----ANLSKLTTLKADD-NKISDISPLASLPNLIEVHL 202 (308)
T ss_dssp SSCCCCCG------GGGGCTTCCEEECCS---SCCCCCGG-G----TTCTTCCEEECCS-SCCCCCGGGGGCTTCCEEEC
T ss_pred CCccCcCc------cccCCCCccEEEccC---CcCCCChh-h----cCCCCCCEEECCC-CccCcChhhcCCCCCCEEEc
Confidence 54444322 234555666666655 23443333 1 1445666666665 45555554455666666666
Q ss_pred cCCCCCCcCCCCCCCCCcceEEeeCCc
Q 039619 316 CCCPKLQKFPDNGLPTSLLRLEIYGCP 342 (459)
Q Consensus 316 ~~c~~l~~lp~~~l~~sL~~L~i~~c~ 342 (459)
++| .+..++...-+++|+.|++++++
T Consensus 203 ~~N-~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 203 KNN-QISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp TTS-CCCBCGGGTTCTTCCEEEEEEEE
T ss_pred cCC-ccCccccccCCCCCCEEEccCCe
Confidence 664 44444432225666666666654
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.60 E-value=2.8e-15 Score=144.66 Aligned_cols=209 Identities=13% Similarity=0.093 Sum_probs=161.5
Q ss_pred eeEEEEecCCCCcccc-CCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeec
Q 039619 110 VYQLQIIPCPSLTSLW-SKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIF 188 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp-~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 188 (459)
|++|+++++ .++.++ .....+++|++|+++++ .+..++....+ ++|++|+++++ .++.++. .++|++|+++
T Consensus 36 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~l-~~L~~L~Ls~n-~l~~l~~----~~~L~~L~l~ 107 (317)
T 3o53_A 36 VKELDLSGN-PLSQISAADLAPFTKLELLNLSSN-VLYETLDLESL-STLRTLDLNNN-YVQELLV----GPSIETLHAA 107 (317)
T ss_dssp CSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTS-CCEEEEEETTC-TTCCEEECCSS-EEEEEEE----CTTCCEEECC
T ss_pred CCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCC-cCCcchhhhhc-CCCCEEECcCC-ccccccC----CCCcCEEECC
Confidence 999999884 566655 23456679999999986 55555445677 89999999986 5666653 4899999999
Q ss_pred cccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCC-CCCCccCEEEEeCC
Q 039619 189 ICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGL-HRFTSVRLLTLFGG 265 (459)
Q Consensus 189 ~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l-~~l~~L~~L~l~~~ 265 (459)
++ .+..++.. .+++|++|+++++ .++.++.. ..+++|++|+++++.+.... +. .+ ..+++|++|++++
T Consensus 108 ~n-~l~~~~~~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~---~~~~~l~~L~~L~L~~- 178 (317)
T 3o53_A 108 NN-NISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVN-FA---ELAASSDTLEHLNLQY- 178 (317)
T ss_dssp SS-CCSEEEEC--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEE-GG---GGGGGTTTCCEEECTT-
T ss_pred CC-ccCCcCcc--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCccc-HH---HHhhccCcCCEEECCC-
Confidence 97 55555433 4789999999886 46666543 33789999999998887543 33 33 4789999999999
Q ss_pred cCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCC-CCCCCcceEEeeCCch
Q 039619 266 ECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCPKLQKFPDN-GLPTSLLRLEIYGCPL 343 (459)
Q Consensus 266 ~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~-~l~~sL~~L~i~~c~~ 343 (459)
+.+..++... .+++|++|++++ +.++.++ .+..+++|++|++++| .++.+|.. ..+++|+.|++++++-
T Consensus 179 --N~l~~~~~~~-----~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 179 --NFIYDVKGQV-----VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp --SCCCEEECCC-----CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCC
T ss_pred --CcCccccccc-----ccccCCEEECCC-CcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCc
Confidence 4677776654 688999999999 7899988 8888999999999995 77888763 2368999999999864
Q ss_pred h
Q 039619 344 I 344 (459)
Q Consensus 344 L 344 (459)
.
T Consensus 250 ~ 250 (317)
T 3o53_A 250 H 250 (317)
T ss_dssp B
T ss_pred c
Confidence 4
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=4.6e-15 Score=151.65 Aligned_cols=203 Identities=16% Similarity=0.131 Sum_probs=106.2
Q ss_pred CCCcCceEEeCCCCCCCCCccc---------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeecccccccccc
Q 039619 88 SVTLKDPEVLDCPVCYEPLTIP---------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKAL 158 (459)
Q Consensus 88 p~~L~~L~l~~c~~l~~l~~lp---------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L 158 (459)
+++|++|+++++ .+..++ |++|++++| .++..++ ...+++|++|+++++ .++.++. . ++|
T Consensus 33 ~~~L~~L~Ls~n----~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~---~-~~L 101 (487)
T 3oja_A 33 AWNVKELDLSGN----PLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNN-YVQELLV---G-PSI 101 (487)
T ss_dssp GGGCCEEECCSS----CCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSS-EEEEEEE---C-TTC
T ss_pred CCCccEEEeeCC----cCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCC-cCCCCCC---C-CCc
Confidence 347778887774 233222 666666653 3444442 333446666666664 4555542 2 566
Q ss_pred ceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccc-cCC--CCCCCccEEEEe
Q 039619 159 KHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSF-TAN--CFPTNLASVCID 235 (459)
Q Consensus 159 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l-p~~--~~~~~L~~L~l~ 235 (459)
++|++++| .+..++.. .+++|+.|++++|.-....|..+..+++|+.|+++++. +... |.. ..+++|++|+++
T Consensus 102 ~~L~L~~N-~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 102 ETLHAANN-NISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp CEEECCSS-CCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECT
T ss_pred CEEECcCC-cCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecC
Confidence 66666664 34444332 24566666666653222224455556666666666543 3322 221 124566666666
Q ss_pred cCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEe
Q 039619 236 YEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQ 314 (459)
Q Consensus 236 ~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~ 314 (459)
+|.++... ....+++|+.|++++ +.+..+|..+ ..+++|+.|++++ +.+..+| .+..+++|+.|+
T Consensus 178 ~N~l~~~~------~~~~l~~L~~L~Ls~---N~l~~~~~~~----~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~ 243 (487)
T 3oja_A 178 YNFIYDVK------GQVVFAKLKTLDLSS---NKLAFMGPEF----QSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFD 243 (487)
T ss_dssp TSCCCEEE------CCCCCTTCCEEECCS---SCCCEECGGG----GGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEE
T ss_pred CCcccccc------ccccCCCCCEEECCC---CCCCCCCHhH----cCCCCccEEEecC-CcCcccchhhccCCCCCEEE
Confidence 65554333 234455666666655 3444454433 2445566666665 4555555 555555666666
Q ss_pred ccCCC
Q 039619 315 LCCCP 319 (459)
Q Consensus 315 l~~c~ 319 (459)
+++|+
T Consensus 244 l~~N~ 248 (487)
T 3oja_A 244 LRGNG 248 (487)
T ss_dssp CTTCC
T ss_pred cCCCC
Confidence 65543
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=5e-15 Score=151.42 Aligned_cols=209 Identities=13% Similarity=0.091 Sum_probs=139.4
Q ss_pred eeEEEEecCCCCcccc-CCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeec
Q 039619 110 VYQLQIIPCPSLTSLW-SKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIF 188 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp-~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 188 (459)
|++|+++++ .++.++ .....+++|++|+++++ .+..++....+ ++|++|++++| .+..+|. .++|++|+++
T Consensus 36 L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~l~~l-~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L~ 107 (487)
T 3oja_A 36 VKELDLSGN-PLSQISAADLAPFTKLELLNLSSN-VLYETLDLESL-STLRTLDLNNN-YVQELLV----GPSIETLHAA 107 (487)
T ss_dssp CCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTS-CCEEEEECTTC-TTCCEEECCSS-EEEEEEE----CTTCCEEECC
T ss_pred ccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcccccC-CCCCEEEecCC-cCCCCCC----CCCcCEEECc
Confidence 788888774 455554 23455568888888775 45444335566 78888888875 5665553 3788888888
Q ss_pred cccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCC-CCCccCEEEEeCC
Q 039619 189 ICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLH-RFTSVRLLTLFGG 265 (459)
Q Consensus 189 ~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~-~l~~L~~L~l~~~ 265 (459)
+| .+..++. ..+++|+.|++++|. +..++.. +.+++|++|++++|.+.... +. .+. .+++|+.|++++
T Consensus 108 ~N-~l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~---~l~~~l~~L~~L~Ls~- 178 (487)
T 3oja_A 108 NN-NISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVN-FA---ELAASSDTLEHLNLQY- 178 (487)
T ss_dssp SS-CCCCEEE--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEE-GG---GGGGGTTTCCEEECTT-
T ss_pred CC-cCCCCCc--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcC-hH---HHhhhCCcccEEecCC-
Confidence 77 4444443 246778888887754 4444322 33678888888887776544 33 343 678888888887
Q ss_pred cCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCC-CCCCCcceEEeeCCch
Q 039619 266 ECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCPKLQKFPDN-GLPTSLLRLEIYGCPL 343 (459)
Q Consensus 266 ~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~-~l~~sL~~L~i~~c~~ 343 (459)
+.+..++... .+++|+.|++++ +.++.+| .+..+++|+.|++++| .+..+|.. ..+++|+.|++++++.
T Consensus 179 --N~l~~~~~~~-----~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 179 --NFIYDVKGQV-----VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp --SCCCEEECCC-----CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCB
T ss_pred --Cccccccccc-----cCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCC
Confidence 3566665543 577888888887 6777777 7777788888888874 56666653 2357788888887764
Q ss_pred h
Q 039619 344 I 344 (459)
Q Consensus 344 L 344 (459)
.
T Consensus 250 ~ 250 (487)
T 3oja_A 250 H 250 (487)
T ss_dssp C
T ss_pred c
Confidence 3
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=6.4e-15 Score=141.52 Aligned_cols=192 Identities=16% Similarity=0.189 Sum_probs=138.7
Q ss_pred eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeecc
Q 039619 110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFI 189 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 189 (459)
|++|++++| .++.++ ....+++|++|+++++ .+..++....+ ++|++|+++++ .++.++ .+..+++|++|++++
T Consensus 43 L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~~~~l-~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 43 ITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDN-QITDLAPLKNL-TKITELELSGN-PLKNVS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp CCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTC-CSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTT
T ss_pred cCEEEeeCC-CccCch-hhhccCCCCEEEccCC-cCCCChhHccC-CCCCEEEccCC-cCCCch-hhcCCCCCCEEECCC
Confidence 556666553 455565 4445568888888875 56666655667 78888888885 466665 577788888888888
Q ss_pred ccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCC
Q 039619 190 CQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCG 269 (459)
Q Consensus 190 c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~ 269 (459)
| .+..++. +..+++|++|++++| .+..++....+++|++|+++++.++... .+..+++|+.|++++ +.
T Consensus 117 n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~---n~ 184 (308)
T 1h6u_A 117 T-QITDVTP-LAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQVSDLT------PLANLSKLTTLKADD---NK 184 (308)
T ss_dssp S-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCS---SC
T ss_pred C-CCCCchh-hcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCCcCCCCh------hhcCCCCCCEEECCC---Cc
Confidence 7 5666654 778888888888775 4555555455788888888888777544 467889999999988 45
Q ss_pred ceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCCCCcCCC
Q 039619 270 VVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFPD 326 (459)
Q Consensus 270 l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~lp~ 326 (459)
+..++.- ..+++|++|++++ +.++.++.+..+++|+.|+++++ .+...|.
T Consensus 185 l~~~~~l-----~~l~~L~~L~L~~-N~l~~~~~l~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 185 ISDISPL-----ASLPNLIEVHLKN-NQISDVSPLANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp CCCCGGG-----GGCTTCCEEECTT-SCCCBCGGGTTCTTCCEEEEEEE-EEECCCE
T ss_pred cCcChhh-----cCCCCCCEEEccC-CccCccccccCCCCCCEEEccCC-eeecCCe
Confidence 6666542 2678899999998 67887776778899999999985 4555543
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.59 E-value=1.7e-14 Score=136.16 Aligned_cols=77 Identities=22% Similarity=0.341 Sum_probs=32.5
Q ss_pred cCcEEEeecCCCceeecc--ccccccccceEEeecccCCcccc-ccCCCCCcccEEeeccccCcccCcc-cCCCCCCccE
Q 039619 133 TLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESIA-EGLDDNTSLETMEIFICQNLKALPN-GLRNLTSLQY 208 (459)
Q Consensus 133 ~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~ 208 (459)
+|++|+++++ .+..++. ...+ ++|++|+++++ .+..++ ..+..+++|++|+++++ .+..++. .+..+++|++
T Consensus 53 ~L~~L~l~~n-~l~~~~~~~~~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 128 (276)
T 2z62_A 53 ELQVLDLSRC-EIQTIEDGAYQSL-SHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKE 128 (276)
T ss_dssp TCSEEECTTC-CCCEECTTTTTTC-TTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCE
T ss_pred CCcEEECCCC-cCCccCHHHccCC-cCCCEEECCCC-ccCccChhhhcCCccccEEECCCC-CccccCchhcccCCCCCE
Confidence 4555555443 3333331 2333 44555555443 233332 33444455555555444 2222222 3444445555
Q ss_pred Eeecc
Q 039619 209 LLIQD 213 (459)
Q Consensus 209 L~l~~ 213 (459)
|++++
T Consensus 129 L~l~~ 133 (276)
T 2z62_A 129 LNVAH 133 (276)
T ss_dssp EECCS
T ss_pred EECcC
Confidence 55544
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.59 E-value=3.2e-14 Score=135.40 Aligned_cols=190 Identities=16% Similarity=0.076 Sum_probs=116.2
Q ss_pred eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeec--cccccccccceEEeecccCCccccccCCCCCcccEEee
Q 039619 110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLS--LRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEI 187 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~--~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 187 (459)
++++++++ ..++.+|.. +++++++|+++++ .+..++ ....+ ++|++|+++++ .++.++.. ..+++|++|++
T Consensus 12 l~~l~~~~-~~l~~ip~~--~~~~l~~L~L~~N-~l~~~~~~~~~~l-~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 12 HLEVNCDK-RNLTALPPD--LPKDTTILHLSEN-LLYTFSLATLMPY-TRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp CCEEECTT-SCCSSCCSC--CCTTCCEEECTTS-CCSEEEGGGGTTC-TTCCEEECTTS-CCCEEECC-SCCTTCCEEEC
T ss_pred ccEEECCC-CCCCcCCCC--CCCCCCEEEcCCC-cCCccCHHHhhcC-CCCCEEECCCC-ccCcccCC-CCCCcCCEEEC
Confidence 34444433 344455422 2345666666653 344443 22445 56666666653 45555443 55666666666
Q ss_pred ccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCC
Q 039619 188 FICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGG 265 (459)
Q Consensus 188 ~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~ 265 (459)
+++ .+..+|..+..+++|++|+++++ .++.++.. ..+++|++|++++++++... +. .+..+++|+.|++++
T Consensus 85 s~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~-~~---~~~~l~~L~~L~L~~- 157 (290)
T 1p9a_G 85 SHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLP-PG---LLTPTPKLEKLSLAN- 157 (290)
T ss_dssp CSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TT---TTTTCTTCCEEECTT-
T ss_pred CCC-cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccC-hh---hcccccCCCEEECCC-
Confidence 665 45556665666666666666553 44555433 33566666666666665433 22 467788888888887
Q ss_pred cCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCC
Q 039619 266 ECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCP 319 (459)
Q Consensus 266 ~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~ 319 (459)
+.+..+|... ...+++|+.|++++ +.++.+| .+..+++|+.|++.+++
T Consensus 158 --N~l~~l~~~~---~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 158 --NNLTELPAGL---LNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp --SCCSCCCTTT---TTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred --CcCCccCHHH---hcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCC
Confidence 4677777643 12467888999988 7888888 77778889999998864
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.58 E-value=7.5e-14 Score=131.32 Aligned_cols=190 Identities=23% Similarity=0.308 Sum_probs=131.9
Q ss_pred eEEEEecCCCCccccCCccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCCcccccc-CCCCCcccEEee
Q 039619 111 YQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESIAEG-LDDNTSLETMEI 187 (459)
Q Consensus 111 ~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l 187 (459)
+.+++++ ..++.+|. .++++|++|+++++ .+..++. ...+ ++|++|+++++ .++.+|.. +..+++|++|++
T Consensus 19 ~~l~~~~-~~l~~ip~--~~~~~l~~L~l~~n-~l~~~~~~~~~~l-~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 19 NSVDCSS-KKLTAIPS--NIPADTKKLDLQSN-KLSSLPSKAFHRL-TKLRLLYLNDN-KLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TEEECTT-SCCSSCCS--CCCTTCSEEECCSS-CCSCCCTTSSSSC-TTCCEEECCSS-CCSCCCTTTTSSCTTCCEEEC
T ss_pred CEEEccC-CCCCccCC--CCCCCCCEEECcCC-CCCeeCHHHhcCC-CCCCEEECCCC-ccCeeChhhhcCCCCCCEEEC
Confidence 3444443 45556662 23457788887774 4666652 3556 78888888774 56666554 466888888888
Q ss_pred ccccCcccCcc-cCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeC
Q 039619 188 FICQNLKALPN-GLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFG 264 (459)
Q Consensus 188 ~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~ 264 (459)
+++ .+..+|. .+..+++|++|+++++ .++.++.. ..+++|++|+++++.+.... +. .+..+++|++|++++
T Consensus 93 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~---~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 93 TDN-KLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLP-KG---VFDKLTSLKELRLYN 166 (270)
T ss_dssp CSS-CCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TT---TTTTCTTCCEEECCS
T ss_pred CCC-cCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCCccC-Hh---HccCCcccceeEecC
Confidence 876 4555554 4567888888888774 45555543 34778888888887776543 22 578899999999998
Q ss_pred CcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCC
Q 039619 265 GECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCP 319 (459)
Q Consensus 265 ~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~ 319 (459)
+.+..++... ...+++|++|++++ +.++.++ .+..+++|+.|++++++
T Consensus 167 ---n~l~~~~~~~---~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 167 ---NQLKRVPEGA---FDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ---SCCSCCCTTT---TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---CcCcEeChhH---hccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCCC
Confidence 4666666542 12568999999998 6888888 57889999999999865
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.57 E-value=4.5e-14 Score=133.24 Aligned_cols=204 Identities=17% Similarity=0.164 Sum_probs=152.4
Q ss_pred CCccccCCccccccCcEEEeecCCCceeec--cccccccccceEEeecccCCcccc-ccCCCCCcccEEeeccccCcccC
Q 039619 120 SLTSLWSKSELPATLENIYVDRCSKLAFLS--LRGNLSKALKHLYIISCSNLESIA-EGLDDNTSLETMEIFICQNLKAL 196 (459)
Q Consensus 120 ~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~--~~~~lp~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l 196 (459)
.++.+|. .++++|++|+++++ .++.++ ....+ ++|++|+++++ .+..++ ..+..+++|++|+++++. +..+
T Consensus 18 ~l~~ip~--~l~~~l~~L~ls~n-~l~~~~~~~~~~l-~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~ 91 (276)
T 2z62_A 18 NFYKIPD--NLPFSTKNLDLSFN-PLRHLGSYSFFSF-PELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSL 91 (276)
T ss_dssp CCSSCCS--SSCTTCCEEECTTC-CCCEECTTTTTTC-TTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEE
T ss_pred CccccCC--CCCCCccEEECCCC-cccccCHhHhccc-cCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCcc
Confidence 4556663 34568999999885 677776 34677 89999999996 566665 468889999999999984 4444
Q ss_pred -cccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceec
Q 039619 197 -PNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSF 273 (459)
Q Consensus 197 -p~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l 273 (459)
+..+..+++|++|+++++ .+..++.. ..+++|++|+++++.+.....+. .+..+++|++|++++ +.+..+
T Consensus 92 ~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~---~~~~l~~L~~L~Ls~---N~l~~~ 164 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPE---YFSNLTNLEHLDLSS---NKIQSI 164 (276)
T ss_dssp CTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG---GGGGCTTCCEEECCS---SCCCEE
T ss_pred ChhhhcCCccccEEECCCC-CccccCchhcccCCCCCEEECcCCccceecCch---hhccCCCCCEEECCC---CCCCcC
Confidence 467889999999999886 45555543 45789999999998876521133 678899999999998 456665
Q ss_pred CCCCCCCccCCCCcc----eEEeecCCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCC
Q 039619 274 PPEKDTGKALPASLK----HLSIWNFPNLERIS-SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGC 341 (459)
Q Consensus 274 ~~~~~~~~~~~~~L~----~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c 341 (459)
+... ...+.+|+ +|++++ +.++.++ ......+|++|++++| .++.+|...+ .++|++|+++++
T Consensus 165 ~~~~---~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 165 YCTD---LRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CGGG---GHHHHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSS
T ss_pred CHHH---hhhhhhccccceeeecCC-CcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCC
Confidence 5421 01334555 889998 7888888 5555668999999996 5888886433 689999999954
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.54 E-value=4.3e-14 Score=135.79 Aligned_cols=191 Identities=16% Similarity=0.124 Sum_probs=88.3
Q ss_pred eeEEEEecCCCCccccCCc--cccccCcEEEeecCCCceeec-----cccccccccceEEeecccCCccc-cccCCCCCc
Q 039619 110 VYQLQIIPCPSLTSLWSKS--ELPATLENIYVDRCSKLAFLS-----LRGNLSKALKHLYIISCSNLESI-AEGLDDNTS 181 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~~--~~~~~L~~L~l~~c~~l~~l~-----~~~~lp~~L~~L~l~~c~~l~~l-p~~l~~l~~ 181 (459)
|++|++++|......|... ..+++|++|+++++..-...+ ....+ ++|++|+++++. +..+ +..+..+++
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~-~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK-PGLKVLSIAQAH-SPAFSCEQVRAFPA 170 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC-SCCCEEEEECCS-SCCCCTTSCCCCTT
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc-cCCCEEEeeCCC-cchhhHHHhccCCC
Confidence 6666666644333334332 334566666666643221111 00134 566666666643 3333 345556666
Q ss_pred ccEEeeccccCccc--Cc--ccCCCCCCccEEeeccCCCCccccCC-----CCCCCccEEEEecCcccccccccCCCCCC
Q 039619 182 LETMEIFICQNLKA--LP--NGLRNLTSLQYLLIQDCPTIGSFTAN-----CFPTNLASVCIDYEKIYKPLILERGPGLH 252 (459)
Q Consensus 182 L~~L~l~~c~~l~~--lp--~~l~~l~~L~~L~l~~c~~l~~lp~~-----~~~~~L~~L~l~~~~l~~~~~~~~~~~l~ 252 (459)
|++|+++++..... ++ ..+..+++|++|++++| .++.++.. ..+++|++|++++|.+.... |. .+.
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-p~---~~~ 245 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATV-NP---SAP 245 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCC-CS---CCS
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccc-hh---hHH
Confidence 66666666532211 21 12245566666666654 33333321 12345555555555444332 11 222
Q ss_pred CC---CccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccC
Q 039619 253 RF---TSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCC 317 (459)
Q Consensus 253 ~l---~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~ 317 (459)
.+ ++|++|++++ +.+..+|... +++|++|++++ +.++.+|....+++|++|++++
T Consensus 246 ~~~~~~~L~~L~Ls~---N~l~~lp~~~------~~~L~~L~Ls~-N~l~~~~~~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 246 RCMWSSALNSLNLSF---AGLEQVPKGL------PAKLRVLDLSS-NRLNRAPQPDELPEVDNLTLDG 303 (310)
T ss_dssp SCCCCTTCCCEECCS---SCCCSCCSCC------CSCCSCEECCS-CCCCSCCCTTSCCCCSCEECSS
T ss_pred hccCcCcCCEEECCC---CCCCchhhhh------cCCCCEEECCC-CcCCCCchhhhCCCccEEECcC
Confidence 22 3555555554 2344444432 24555555554 4444444334444455555544
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.53 E-value=2.9e-14 Score=137.10 Aligned_cols=194 Identities=17% Similarity=0.146 Sum_probs=145.6
Q ss_pred eeEEEEecCCCCccccCCc--cccccCcEEEeecCCCceeeccc-ccc----ccccceEEeecccCCcccc-ccCCCCCc
Q 039619 110 VYQLQIIPCPSLTSLWSKS--ELPATLENIYVDRCSKLAFLSLR-GNL----SKALKHLYIISCSNLESIA-EGLDDNTS 181 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~~--~~~~~L~~L~l~~c~~l~~l~~~-~~l----p~~L~~L~l~~c~~l~~lp-~~l~~l~~ 181 (459)
|++|+++++.--..+|... ..+++|++|+++++ .++.+|.. +.+ +++|++|+++++ .+..++ ..+..+++
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPA 174 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSS
T ss_pred ccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCC
Confidence 8888888854333566543 55679999999985 56655521 122 279999999996 456664 78899999
Q ss_pred ccEEeeccccCccc--CcccC--CCCCCccEEeeccCCCCccccC---C--CCCCCccEEEEecCcccccccccCCCCCC
Q 039619 182 LETMEIFICQNLKA--LPNGL--RNLTSLQYLLIQDCPTIGSFTA---N--CFPTNLASVCIDYEKIYKPLILERGPGLH 252 (459)
Q Consensus 182 L~~L~l~~c~~l~~--lp~~l--~~l~~L~~L~l~~c~~l~~lp~---~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~ 252 (459)
|++|+++++..... +|..+ ..+++|++|++++| .++.++. . ..+++|++|++++|.+.... +. ..+.
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~--~~~~ 250 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAA-GA--PSCD 250 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC-CC--SCCC
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCccc-ch--hhhh
Confidence 99999999854433 33344 78999999999986 4554332 1 24689999999998887633 21 1456
Q ss_pred CCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccCCC
Q 039619 253 RFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCP 319 (459)
Q Consensus 253 ~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~ 319 (459)
.+++|++|++++ +.+..+|... . ++|++|++++ +.++.+|.+..+++|++|++++++
T Consensus 251 ~l~~L~~L~Ls~---N~l~~ip~~~-----~-~~L~~L~Ls~-N~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 251 WPSQLNSLNLSF---TGLKQVPKGL-----P-AKLSVLDLSY-NRLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCTTCCEEECTT---SCCSSCCSSC-----C-SEEEEEECCS-SCCCSCCCTTTSCEEEEEECTTCT
T ss_pred hcCCCCEEECCC---CccChhhhhc-----c-CCceEEECCC-CCCCCChhHhhCCCCCEEeccCCC
Confidence 789999999999 4677888865 3 8999999999 789988878889999999999853
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=9.9e-16 Score=148.75 Aligned_cols=231 Identities=14% Similarity=0.161 Sum_probs=140.7
Q ss_pred CCCcCceEEeCCCCCCCCCc-----c--c-eeEEEEecCCCCccccCCccccccCcEEEeecCCCcee--ec-ccccccc
Q 039619 88 SVTLKDPEVLDCPVCYEPLT-----I--P-VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAF--LS-LRGNLSK 156 (459)
Q Consensus 88 p~~L~~L~l~~c~~l~~l~~-----l--p-L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~--l~-~~~~lp~ 156 (459)
|..++.++++++ .+.. + + ++.|++.++ .+...+.....+++|++|++++|. +.. ++ ....+ +
T Consensus 46 ~~~~~~l~l~~~----~~~~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~-~ 118 (336)
T 2ast_B 46 ESLWQTLDLTGK----NLHPDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQC-S 118 (336)
T ss_dssp STTSSEEECTTC----BCCHHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTB-C
T ss_pred chhheeeccccc----cCCHHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhC-C
Confidence 335677777763 2221 1 2 778888763 344433344445688888888864 432 33 23566 7
Q ss_pred ccceEEeecccCCccccccCCCCCcccEEeeccccCcc--cCcccCCCCCCccEEeeccCCCCcc--ccCC-CCCC-Ccc
Q 039619 157 ALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLK--ALPNGLRNLTSLQYLLIQDCPTIGS--FTAN-CFPT-NLA 230 (459)
Q Consensus 157 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~~l~~--lp~~-~~~~-~L~ 230 (459)
+|++|++++|..-...+..+..+++|++|++++|..++ .++..+..+++|++|++++|..++. ++.. ..++ +|+
T Consensus 119 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 88888888875333556677778888888888886555 3555566788888888888755553 2322 2355 888
Q ss_pred EEEEecC--cccccccccCCCCCCCCCccCEEEEeCCcCCCce-ecCCCCCCCccCCCCcceEEeecCCCCCccC--CCC
Q 039619 231 SVCIDYE--KIYKPLILERGPGLHRFTSVRLLTLFGGECCGVV-SFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIE 305 (459)
Q Consensus 231 ~L~l~~~--~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~-~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~ 305 (459)
+|+++++ .+++...+. .+..+++|++|++++ |..+. ..+..+ ..+++|++|++++|..+.... .+.
T Consensus 199 ~L~l~~~~~~~~~~~l~~---~~~~~~~L~~L~l~~--~~~l~~~~~~~l----~~l~~L~~L~l~~~~~~~~~~~~~l~ 269 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLST---LVRRCPNLVHLDLSD--SVMLKNDCFQEF----FQLNYLQHLSLSRCYDIIPETLLELG 269 (336)
T ss_dssp EEECCSCGGGSCHHHHHH---HHHHCTTCSEEECTT--CTTCCGGGGGGG----GGCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred EEEeCCCcccCCHHHHHH---HHhhCCCCCEEeCCC--CCcCCHHHHHHH----hCCCCCCEeeCCCCCCCCHHHHHHHh
Confidence 8888875 443211022 345677888888887 55332 222222 245778888888765443322 456
Q ss_pred CCCCCCEEeccCCCCCCcCCCCCC---CCCcceEEee
Q 039619 306 NLTSFESLQLCCCPKLQKFPDNGL---PTSLLRLEIY 339 (459)
Q Consensus 306 ~l~~L~~L~l~~c~~l~~lp~~~l---~~sL~~L~i~ 339 (459)
.+++|++|++++| ++..++ ..+++.|+++
T Consensus 270 ~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~ 301 (336)
T 2ast_B 270 EIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQIN 301 (336)
T ss_dssp GCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEES
T ss_pred cCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEe
Confidence 6778888888776 343222 2346666664
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.50 E-value=5e-13 Score=124.23 Aligned_cols=170 Identities=19% Similarity=0.266 Sum_probs=78.5
Q ss_pred cCcEEEeecCCCceeeccccccccccceEEeecccCCccc-cccCCCCCcccEEeeccccCcccCc-ccCCCCCCccEEe
Q 039619 133 TLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESI-AEGLDDNTSLETMEIFICQNLKALP-NGLRNLTSLQYLL 210 (459)
Q Consensus 133 ~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~ 210 (459)
+.+++++++ ..++.+|. .+|+++++|+++++ .+..+ +..+..+++|++|+++++ .+..++ ..+..+++|++|+
T Consensus 15 ~~~~l~~~~-~~l~~~p~--~~~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQG-KSLDSVPS--GIPADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEECTT-CCCSSCCS--CCCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCeEEecCC-CCccccCC--CCCCCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEE
Confidence 344555544 34444442 12355556666553 23333 234555566666666655 333332 2345556666666
Q ss_pred eccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceE
Q 039619 211 IQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHL 290 (459)
Q Consensus 211 l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L 290 (459)
++++ .++.++.. .+..+++|++|++++ +.+..++... ...+++|++|
T Consensus 90 L~~n-~l~~~~~~--------------------------~~~~l~~L~~L~L~~---N~l~~~~~~~---~~~l~~L~~L 136 (251)
T 3m19_A 90 LANN-QLASLPLG--------------------------VFDHLTQLDKLYLGG---NQLKSLPSGV---FDRLTKLKEL 136 (251)
T ss_dssp CTTS-CCCCCCTT--------------------------TTTTCTTCCEEECCS---SCCCCCCTTT---TTTCTTCCEE
T ss_pred CCCC-cccccChh--------------------------HhcccCCCCEEEcCC---CcCCCcChhH---hccCCcccEE
Confidence 6553 33343322 234444555555544 2344443321 0124455555
Q ss_pred EeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCCc
Q 039619 291 SIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGCP 342 (459)
Q Consensus 291 ~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~ 342 (459)
++++ +.++.++ .+..+++|++|+++++ .++.++...+ +++|+.|++++++
T Consensus 137 ~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 137 RLNT-NQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ECcC-CcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 5554 3444444 3445555555555553 3444443222 3455555555543
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.50 E-value=1.5e-13 Score=129.40 Aligned_cols=170 Identities=21% Similarity=0.268 Sum_probs=84.3
Q ss_pred eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccc-cCCCCCcccEEeec
Q 039619 110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAE-GLDDNTSLETMEIF 188 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~ 188 (459)
|+.|++.+ ..++.++ ....+++|++|+++++ .+..++....+ ++|++|++++| .++.++. .+..+++|++|+++
T Consensus 43 L~~L~l~~-~~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~l~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 43 IDQIIANN-SDIKSVQ-GIQYLPNVRYLALGGN-KLHDISALKEL-TNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp CCEEECTT-SCCCCCT-TGGGCTTCCEEECTTS-CCCCCGGGTTC-TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred eeeeeeCC-CCccccc-ccccCCCCcEEECCCC-CCCCchhhcCC-CCCCEEECCCC-ccCccChhHhcCCcCCCEEECC
Confidence 34444433 2333333 2333345556655553 34444433444 55555555553 3333332 23455555555555
Q ss_pred cccCcccCcc-cCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcC
Q 039619 189 ICQNLKALPN-GLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGEC 267 (459)
Q Consensus 189 ~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c 267 (459)
+| .+..++. .+..+++|++|++++| .++.++. . .+..+++|++|++++
T Consensus 118 ~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-----------------------~---~~~~l~~L~~L~l~~--- 166 (272)
T 3rfs_A 118 EN-QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPK-----------------------G---VFDKLTNLTELDLSY--- 166 (272)
T ss_dssp TS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-----------------------T---TTTTCTTCCEEECCS---
T ss_pred CC-cCCccCHHHhccCCCCCEEECCCC-ccCccCH-----------------------H---HhccCccCCEEECCC---
Confidence 54 2333332 2344555555555543 2333332 1 345666666666666
Q ss_pred CCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCC
Q 039619 268 CGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCP 319 (459)
Q Consensus 268 ~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~ 319 (459)
+.+..++... ...+++|++|++++ +.++.++ .+..+++|++|++++++
T Consensus 167 n~l~~~~~~~---~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 167 NQLQSLPEGV---FDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp SCCCCCCTTT---TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCccCHHH---hcCCccCCEEECCC-CcCCccCHHHHhCCcCCCEEEccCCC
Confidence 2444444421 01456677777766 4566655 45667777777777754
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.49 E-value=1.4e-13 Score=132.28 Aligned_cols=200 Identities=15% Similarity=0.135 Sum_probs=142.1
Q ss_pred ccCcEEEeecCCCceeeccc---cccccccceEEeecccCCcccc----ccCCCCCcccEEeeccccCcccCcccCCCCC
Q 039619 132 ATLENIYVDRCSKLAFLSLR---GNLSKALKHLYIISCSNLESIA----EGLDDNTSLETMEIFICQNLKALPNGLRNLT 204 (459)
Q Consensus 132 ~~L~~L~l~~c~~l~~l~~~---~~lp~~L~~L~l~~c~~l~~lp----~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~ 204 (459)
++|++|+++++.-....|.. ..+ ++|++|+++++..-...+ ..+..+++|++|++++|.-....+..+..++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATG-LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCC-BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccC-CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 47999999997544455532 567 899999999975333222 2345789999999999854344446788999
Q ss_pred CccEEeeccCCCCcc--ccCC---CCCCCccEEEEecCcccccc-cccCCCCCCCCCccCEEEEeCCcCCCceec-CCCC
Q 039619 205 SLQYLLIQDCPTIGS--FTAN---CFPTNLASVCIDYEKIYKPL-ILERGPGLHRFTSVRLLTLFGGECCGVVSF-PPEK 277 (459)
Q Consensus 205 ~L~~L~l~~c~~l~~--lp~~---~~~~~L~~L~l~~~~l~~~~-~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l-~~~~ 277 (459)
+|++|+++++..... ++.. +.+++|++|++++++++... .+. +.+..+++|++|++++ +.+..+ |..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~l~~~l~~L~~L~Ls~---N~l~~~~p~~~ 244 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA--ALAAAGVQPHSLDLSH---NSLRATVNPSA 244 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH--HHHHHTCCCSSEECTT---SCCCCCCCSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH--HHHhcCCCCCEEECCC---CCCCccchhhH
Confidence 999999999764321 2221 34789999999998886322 000 0135789999999998 455554 5544
Q ss_pred CCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCCCCCCCcceEEeeCCc
Q 039619 278 DTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCPKLQKFPDNGLPTSLLRLEIYGCP 342 (459)
Q Consensus 278 ~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c~ 342 (459)
. ....+++|++|++++ +.++.+| .+. ++|++|++++| +++.+|....+++|+.|++++++
T Consensus 245 ~-~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 245 P-RCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp S-SCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred H-hccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 2 001237999999998 7899998 554 89999999985 67777653446899999998875
No 82
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.49 E-value=1.2e-15 Score=159.78 Aligned_cols=339 Identities=15% Similarity=0.061 Sum_probs=174.1
Q ss_pred CCCCCCeEeccCCCccCcccccCCccCCccceeeccccccccccCC-----CCCCCcccCCC----------CCCCCCCC
Q 039619 23 RFPKRQRSSQQDLDESEYSEEVEEEEFPTVQRQARSQETRAADKGG-----GSKGNKTADPG----------KRSNNGPV 87 (459)
Q Consensus 23 ~f~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~-----~~~~~~~~~~~----------~~~~~~~l 87 (459)
.+++|++|++.++.............+|+|++|.+.+|..+..... ....++.++.. +.......
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 4778888888776432111111111467777777777743321000 01111111111 11111112
Q ss_pred CCCcCceEEeCCCCCCCCC-----c----cc-eeEEEEecCCCCccccCCccccccCcEEEeec----------------
Q 039619 88 SVTLKDPEVLDCPVCYEPL-----T----IP-VYQLQIIPCPSLTSLWSKSELPATLENIYVDR---------------- 141 (459)
Q Consensus 88 p~~L~~L~l~~c~~l~~l~-----~----lp-L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~---------------- 141 (459)
.++|++|++++|. ..+. . .| |++|++++|..++.++.....+++|++|++..
T Consensus 183 ~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 183 YTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp CCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred CCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 2367777777762 0111 1 13 77777777655555554444455777776433
Q ss_pred ---CCCceeec------------cccccccccceEEeecccCCcc--ccccCCCCCcccEEeeccccCcccCcccCCCCC
Q 039619 142 ---CSKLAFLS------------LRGNLSKALKHLYIISCSNLES--IAEGLDDNTSLETMEIFICQNLKALPNGLRNLT 204 (459)
Q Consensus 142 ---c~~l~~l~------------~~~~lp~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~ 204 (459)
|.+++.+. ....+ ++|++|++++|. +.. +...+..+++|++|++.+|..-..++.....++
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVC-SRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCK 338 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHH-TTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCT
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhh-CCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCC
Confidence 23333331 00134 678888887775 432 222345677888888877722112222223467
Q ss_pred CccEEeecc--------CCCCccccCC---CCCCCccEEEEecCcccccccccCCCCC-CCCCccCEEEEe-----CCcC
Q 039619 205 SLQYLLIQD--------CPTIGSFTAN---CFPTNLASVCIDYEKIYKPLILERGPGL-HRFTSVRLLTLF-----GGEC 267 (459)
Q Consensus 205 ~L~~L~l~~--------c~~l~~lp~~---~~~~~L~~L~l~~~~l~~~~~~~~~~~l-~~l~~L~~L~l~-----~~~c 267 (459)
+|++|++.+ |..+...... ..+++|++|.+..+.++... .. .+ ..+++|++|+++ + |
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~-~~---~l~~~~~~L~~L~L~~~~~~~--~ 412 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA-LI---TIARNRPNMTRFRLCIIEPKA--P 412 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHH-HH---HHHHHCTTCCEEEEEESSTTC--C
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHH-HH---HHHhhCCCcceeEeecccCCC--c
Confidence 788888843 3333221100 12578888876666665432 11 22 257888899888 4 5
Q ss_pred CCceecCCCCC--CCccCCCCcceEEeecCCCCCccC--CCC-CCCCCCEEeccCCCCCCcCCCC---CCCCCcceEEee
Q 039619 268 CGVVSFPPEKD--TGKALPASLKHLSIWNFPNLERIS--SIE-NLTSFESLQLCCCPKLQKFPDN---GLPTSLLRLEIY 339 (459)
Q Consensus 268 ~~l~~l~~~~~--~~~~~~~~L~~L~l~~c~~l~~l~--~l~-~l~~L~~L~l~~c~~l~~lp~~---~l~~sL~~L~i~ 339 (459)
+.+...|...+ .....+++|++|++++ .++... .+. .+++|++|++++|. ++..... .-+++|++|+++
T Consensus 413 ~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~ 489 (594)
T 2p1m_B 413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIR 489 (594)
T ss_dssp CTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEE
T ss_pred ccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECc
Confidence 66664432100 0001346788888865 444322 222 36788888888875 3221110 115789999999
Q ss_pred CCchhHHhhhcCcCCccccccCCCeEEeCceeeeCHHHHh
Q 039619 340 GCPLIEERFEKDKGQYWSLIADIPCVRIDCHYVIDPKAQR 379 (459)
Q Consensus 340 ~c~~L~~~~~~~~~~~~~~i~~i~~l~~~~~~~l~~~~~~ 379 (459)
+|+.-...... -.....++..+.+.+|.. .....+
T Consensus 490 ~n~~~~~~~~~----~~~~l~~L~~L~l~~~~~-~~~~~~ 524 (594)
T 2p1m_B 490 DCPFGDKALLA----NASKLETMRSLWMSSCSV-SFGACK 524 (594)
T ss_dssp SCSCCHHHHHH----TGGGGGGSSEEEEESSCC-BHHHHH
T ss_pred CCCCcHHHHHH----HHHhCCCCCEEeeeCCCC-CHHHHH
Confidence 88752221111 112345777888888866 444333
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.48 E-value=9.1e-13 Score=124.05 Aligned_cols=172 Identities=19% Similarity=0.274 Sum_probs=118.9
Q ss_pred ccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCcc
Q 039619 153 NLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLA 230 (459)
Q Consensus 153 ~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~ 230 (459)
.+ ++|+.|++.++ .++.++ .+..+++|++|+++++ .+..++ .+..+++|++|++++| .++.++.. ..+++|+
T Consensus 39 ~l-~~L~~L~l~~~-~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 39 EL-NSIDQIIANNS-DIKSVQ-GIQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HH-TTCCEEECTTS-CCCCCT-TGGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCC
T ss_pred cc-cceeeeeeCCC-Cccccc-ccccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCC
Confidence 44 66666666664 344443 3556677777777665 344443 4566677777777665 34455442 3366777
Q ss_pred EEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCC
Q 039619 231 SVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLT 308 (459)
Q Consensus 231 ~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~ 308 (459)
+|+++++.++... +. .+..+++|++|++++ +.+..++... ...+++|++|++++ +.++.++ .+..++
T Consensus 113 ~L~L~~n~l~~~~-~~---~~~~l~~L~~L~L~~---n~l~~~~~~~---~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~ 181 (272)
T 3rfs_A 113 ELVLVENQLQSLP-DG---VFDKLTNLTYLNLAH---NQLQSLPKGV---FDKLTNLTELDLSY-NQLQSLPEGVFDKLT 181 (272)
T ss_dssp EEECTTSCCCCCC-TT---TTTTCTTCCEEECCS---SCCCCCCTTT---TTTCTTCCEEECCS-SCCCCCCTTTTTTCT
T ss_pred EEECCCCcCCccC-HH---HhccCCCCCEEECCC---CccCccCHHH---hccCccCCEEECCC-CCcCccCHHHhcCCc
Confidence 7777776665433 32 578899999999998 3677776643 12678999999999 6888888 578999
Q ss_pred CCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCCc
Q 039619 309 SFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGCP 342 (459)
Q Consensus 309 ~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~ 342 (459)
+|++|++++| .++.++...+ +++|+.|++++++
T Consensus 182 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 182 QLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp TCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCC
Confidence 9999999996 5777776433 7899999999865
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=9.8e-13 Score=122.27 Aligned_cols=171 Identities=18% Similarity=0.254 Sum_probs=114.5
Q ss_pred ccceEEeecccCCccccccCCCCCcccEEeeccccCcccC-cccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEe
Q 039619 157 ALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKAL-PNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCID 235 (459)
Q Consensus 157 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~ 235 (459)
+.+++++++ ..++.+|..+. ++|+.|+++++. +..+ +..+..+++|++|+++++ .++.++
T Consensus 15 ~~~~l~~~~-~~l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-------------- 75 (251)
T 3m19_A 15 GKKEVDCQG-KSLDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYN-QLQTLS-------------- 75 (251)
T ss_dssp GGTEEECTT-CCCSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCCCCC--------------
T ss_pred CCeEEecCC-CCccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCC-cCCccC--------------
Confidence 455666655 35666665553 466667666653 3333 234556666666666553 233332
Q ss_pred cCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEE
Q 039619 236 YEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESL 313 (459)
Q Consensus 236 ~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L 313 (459)
+. .+..+++|++|++++ +.+..++... ...+++|++|++++ +.++.++ .+..+++|++|
T Consensus 76 ---------~~---~~~~l~~L~~L~L~~---n~l~~~~~~~---~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L 136 (251)
T 3m19_A 76 ---------AG---VFDDLTELGTLGLAN---NQLASLPLGV---FDHLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKEL 136 (251)
T ss_dssp ---------TT---TTTTCTTCCEEECTT---SCCCCCCTTT---TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred ---------Hh---HhccCCcCCEEECCC---CcccccChhH---hcccCCCCEEEcCC-CcCCCcChhHhccCCcccEE
Confidence 22 568899999999998 4677776542 12678999999999 7899988 46889999999
Q ss_pred eccCCCCCCcCCCCCC--CCCcceEEeeCCchhHHhhhcCcCCccccccCCCeEEeCcee
Q 039619 314 QLCCCPKLQKFPDNGL--PTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCHY 371 (459)
Q Consensus 314 ~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~~L~~~~~~~~~~~~~~i~~i~~l~~~~~~ 371 (459)
+++++ .++.++...+ +++|++|+++++.. ... ....+..+.++..+.+.++.
T Consensus 137 ~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~----~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 137 RLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQL-QSV----PHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC-SCC----CTTTTTTCTTCCEEECCSCC
T ss_pred ECcCC-cCCccCHHHcCcCcCCCEEECCCCcC-Ccc----CHHHHhCCCCCCEEEeeCCc
Confidence 99995 7888886433 68999999999842 211 11234456677888887654
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.47 E-value=1.7e-13 Score=130.44 Aligned_cols=120 Identities=19% Similarity=0.238 Sum_probs=57.1
Q ss_pred ccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEee
Q 039619 132 ATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLI 211 (459)
Q Consensus 132 ~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 211 (459)
++|++|+++++ .+..++....+ ++|++|+++++ .+..++. +..+++|++|+++++ .+..++ .+..+++|++|++
T Consensus 46 ~~L~~L~l~~~-~i~~~~~~~~l-~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNS-DIKSVQGIQYL-PNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTS-CCCCCTTGGGC-TTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEEC
T ss_pred CcccEEEccCC-CcccChhHhcC-CCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCCh-hhccCCCCCEEEC
Confidence 35566666553 44444433444 55555555553 3444443 555555555555554 344433 2455555555555
Q ss_pred ccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeC
Q 039619 212 QDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFG 264 (459)
Q Consensus 212 ~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~ 264 (459)
++| .+..++....+++|++|+++++.++... .+..+++|+.|++++
T Consensus 120 ~~n-~i~~~~~l~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~L~~ 165 (291)
T 1h6t_A 120 EHN-GISDINGLVHLPQLESLYLGNNKITDIT------VLSRLTKLDTLSLED 165 (291)
T ss_dssp TTS-CCCCCGGGGGCTTCCEEECCSSCCCCCG------GGGGCTTCSEEECCS
T ss_pred CCC-cCCCChhhcCCCCCCEEEccCCcCCcch------hhccCCCCCEEEccC
Confidence 553 2333332233444444444444443222 334444444444444
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=1.8e-13 Score=130.18 Aligned_cols=169 Identities=16% Similarity=0.219 Sum_probs=102.7
Q ss_pred cccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccE
Q 039619 152 GNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLAS 231 (459)
Q Consensus 152 ~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~ 231 (459)
..+ ++|++|++++| .+..++ .+..+++|++|++++| .+..++. +..+++|++|+++++ .++.++....+++|++
T Consensus 43 ~~l-~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NEL-NSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLSSLKDLKKLKS 116 (291)
T ss_dssp HHH-HTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGGGGTTCTTCCE
T ss_pred hhc-CcccEEEccCC-CcccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCChhhccCCCCCE
Confidence 345 66777777664 455553 3566677777777766 4555544 666777777777664 3555554455667777
Q ss_pred EEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCC
Q 039619 232 VCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFE 311 (459)
Q Consensus 232 L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~ 311 (459)
|+++++.+.... .+..+++|+.|++++ +.+..++. + ..+++|+.|++++ +.++.++.+..+++|+
T Consensus 117 L~L~~n~i~~~~------~l~~l~~L~~L~l~~---n~l~~~~~-l----~~l~~L~~L~L~~-N~l~~~~~l~~l~~L~ 181 (291)
T 1h6t_A 117 LSLEHNGISDIN------GLVHLPQLESLYLGN---NKITDITV-L----SRLTKLDTLSLED-NQISDIVPLAGLTKLQ 181 (291)
T ss_dssp EECTTSCCCCCG------GGGGCTTCCEEECCS---SCCCCCGG-G----GGCTTCSEEECCS-SCCCCCGGGTTCTTCC
T ss_pred EECCCCcCCCCh------hhcCCCCCCEEEccC---CcCCcchh-h----ccCCCCCEEEccC-CccccchhhcCCCccC
Confidence 777776665433 456667777777776 34444432 2 2556677777776 4566555455667777
Q ss_pred EEeccCCCCCCcCCCCCCCCCcceEEeeCCc
Q 039619 312 SLQLCCCPKLQKFPDNGLPTSLLRLEIYGCP 342 (459)
Q Consensus 312 ~L~l~~c~~l~~lp~~~l~~sL~~L~i~~c~ 342 (459)
+|++++| .++.++...-+++|+.|++++++
T Consensus 182 ~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 182 NLYLSKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp EEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred EEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence 7777664 55555542235677777776654
No 87
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.46 E-value=5e-12 Score=132.90 Aligned_cols=232 Identities=15% Similarity=0.142 Sum_probs=162.6
Q ss_pred CCcCceEEeCCCCCCCCCccc------eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeec----ccccccccc
Q 039619 89 VTLKDPEVLDCPVCYEPLTIP------VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLS----LRGNLSKAL 158 (459)
Q Consensus 89 ~~L~~L~l~~c~~l~~l~~lp------L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~----~~~~lp~~L 158 (459)
.+|+.|++.++ .+..++ |+.+++..+ .....+.. ..+++|+.|++++. .+.... ....+ .+|
T Consensus 328 ~~L~~L~l~~~----~~~~~~~~~l~~L~~l~l~~n-~~~~~~~~-~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~-~~L 399 (635)
T 4g8a_A 328 FGWQHLELVNC----KFGQFPTLKLKSLKRLTFTSN-KGGNAFSE-VDLPSLEFLDLSRN-GLSFKGCCSQSDFGT-ISL 399 (635)
T ss_dssp CCCSEEEEESC----EESSCCCCBCTTCCEEEEESC-CSCCBCCC-CBCTTCCEEECCSS-CCBEEEECCHHHHSC-SCC
T ss_pred hhhhhhhcccc----cccCcCcccchhhhhcccccc-cCCCCccc-ccccccccchhhcc-ccccccccccchhhh-hhh
Confidence 47888888875 233332 888888764 33344423 33458999998874 333322 11344 788
Q ss_pred ceEEeecccCCccccccCCCCCcccEEeeccccCcccCc-ccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEe
Q 039619 159 KHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALP-NGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCID 235 (459)
Q Consensus 159 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~ 235 (459)
+.|++..+ ....++..+..+++|+.+++.++......+ ..+..+++++.++++.+. +...+.. ..+++|+.|+++
T Consensus 400 ~~L~~~~~-~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~-l~~~~~~~~~~~~~L~~L~Ls 477 (635)
T 4g8a_A 400 KYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMA 477 (635)
T ss_dssp CEEECCSC-SEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECT
T ss_pred hhhhcccc-ccccccccccccccccchhhhhccccccccccccccccccccccccccc-cccccccccccchhhhhhhhh
Confidence 89988875 445566678889999999998875554433 345688899999998754 4444333 457899999999
Q ss_pred cCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecC-CCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCE
Q 039619 236 YEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFP-PEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFES 312 (459)
Q Consensus 236 ~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~-~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~ 312 (459)
++.+.....+. .+..+++|++|++++ +.+..++ ..+ ..+++|++|++++ ++++.++ .+..+++|++
T Consensus 478 ~N~~~~~~~~~---~~~~l~~L~~L~Ls~---N~L~~l~~~~f----~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~ 546 (635)
T 4g8a_A 478 GNSFQENFLPD---IFTELRNLTFLDLSQ---CQLEQLSPTAF----NSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQV 546 (635)
T ss_dssp TCEEGGGEECS---CCTTCTTCCEEECTT---SCCCEECTTTT----TTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCE
T ss_pred hcccccccCch---hhhhccccCEEECCC---CccCCcChHHH----cCCCCCCEEECCC-CcCCCCChhHHhCCCCCCE
Confidence 86543322144 678999999999998 3666664 444 3678999999999 7898887 6888999999
Q ss_pred EeccCCCCCCcCCCCC---CCCCcceEEeeCCc
Q 039619 313 LQLCCCPKLQKFPDNG---LPTSLLRLEIYGCP 342 (459)
Q Consensus 313 L~l~~c~~l~~lp~~~---l~~sL~~L~i~~c~ 342 (459)
|+++++ +++.++... ++++|+.|+++++|
T Consensus 547 L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 547 LDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp EECTTS-CCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred EECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 999984 677776543 35789999998865
No 88
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.45 E-value=2.4e-14 Score=149.83 Aligned_cols=234 Identities=12% Similarity=0.053 Sum_probs=126.4
Q ss_pred cccccCcEEEeecCCCceeec-cccccccccceEEeecccCCcc--ccccCCCCCcccEEeeccccCcccCcccCCCCCC
Q 039619 129 ELPATLENIYVDRCSKLAFLS-LRGNLSKALKHLYIISCSNLES--IAEGLDDNTSLETMEIFICQNLKALPNGLRNLTS 205 (459)
Q Consensus 129 ~~~~~L~~L~l~~c~~l~~l~-~~~~lp~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~ 205 (459)
..+++|+.|+++++ ....+| ....+ ++|++|++++|. +.. ++..+..+++|++|++.++-.-..++.....+++
T Consensus 267 ~~~~~L~~L~l~~~-~~~~l~~~~~~~-~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 267 VFPRKLCRLGLSYM-GPNEMPILFPFA-AQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCCTTCCEEEETTC-CTTTGGGGGGGG-GGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred hccccccccCcccc-chhHHHHHHhhc-CCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence 34456666666553 222233 22345 678888888775 332 2233566778888888744222233333345677
Q ss_pred ccEEeecc----------CCCCccccCC---CCCCCccEEEEecCcccccccccCCCCCC-CCCccCEEEEeCCc-CCCc
Q 039619 206 LQYLLIQD----------CPTIGSFTAN---CFPTNLASVCIDYEKIYKPLILERGPGLH-RFTSVRLLTLFGGE-CCGV 270 (459)
Q Consensus 206 L~~L~l~~----------c~~l~~lp~~---~~~~~L~~L~l~~~~l~~~~~~~~~~~l~-~l~~L~~L~l~~~~-c~~l 270 (459)
|++|++++ |+.++..... ..+++|++|+++.+.+++.. .. .+. .+++|++|+++++. |+.+
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~-~~---~l~~~~~~L~~L~l~~~~~~n~l 419 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES-LE---SIGTYLKNLCDFRLVLLDREERI 419 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH-HH---HHHHHCCSCCEEEEEECSCCSCC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH-HH---HHHhhCCCCcEEEEeecCCCccc
Confidence 88888874 6665432111 23678888888666665433 22 233 37788888887310 3455
Q ss_pred eecCCCCC--CCccCCCCcceEEeecCCC-CCccC--C-CCCCCCCCEEeccCCCCCCc--CCC-CCCCCCcceEEeeCC
Q 039619 271 VSFPPEKD--TGKALPASLKHLSIWNFPN-LERIS--S-IENLTSFESLQLCCCPKLQK--FPD-NGLPTSLLRLEIYGC 341 (459)
Q Consensus 271 ~~l~~~~~--~~~~~~~~L~~L~l~~c~~-l~~l~--~-l~~l~~L~~L~l~~c~~l~~--lp~-~~l~~sL~~L~i~~c 341 (459)
...|...+ .....+++|++|++++|.+ +.... . ...+++|++|++++|. +.. ++. ..-+++|++|++++|
T Consensus 420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESC
T ss_pred cCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCC
Confidence 54332100 0001357888888877654 22211 1 2346788888888764 432 111 012478888888888
Q ss_pred chhHHhhhcCcCCccccccCCCeEEeCceeeeCH
Q 039619 342 PLIEERFEKDKGQYWSLIADIPCVRIDCHYVIDP 375 (459)
Q Consensus 342 ~~L~~~~~~~~~~~~~~i~~i~~l~~~~~~~l~~ 375 (459)
+ +....... -.....++..+.+.+|. +..
T Consensus 499 ~-l~~~~~~~---~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 499 C-FSERAIAA---AVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp C-CBHHHHHH---HHHHCSSCCEEEEESCB-CCT
T ss_pred C-CcHHHHHH---HHHhcCccCeeECcCCc-CCH
Confidence 7 33221110 11234567778887776 443
No 89
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.45 E-value=8.1e-13 Score=136.79 Aligned_cols=173 Identities=19% Similarity=0.201 Sum_probs=107.0
Q ss_pred eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeecc
Q 039619 110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFI 189 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 189 (459)
|+.|++++ +.++.+|... +++|++|+++++ .++.+| ..+ ++|++|+++++ .++.+|. +.. +|++|++++
T Consensus 61 L~~L~Ls~-n~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip--~~l-~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 61 FSELQLNR-LNLSSLPDNL--PPQITVLEITQN-ALISLP--ELP-ASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp CSEEECCS-SCCSCCCSCC--CTTCSEEECCSS-CCSCCC--CCC-TTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred ccEEEeCC-CCCCccCHhH--cCCCCEEECcCC-CCcccc--ccc-CCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence 45555555 3455566332 357777877774 566676 344 77777777774 5666766 543 777777777
Q ss_pred ccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCC
Q 039619 190 CQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCG 269 (459)
Q Consensus 190 c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~ 269 (459)
+ .++.+|. .+++|+.|+++++ .++.+|. .+++|++|++++|.++... .+. ++|+.|++++ +.
T Consensus 130 N-~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~L~~lp------~l~--~~L~~L~Ls~---N~ 191 (571)
T 3cvr_A 130 N-QLTMLPE---LPALLEYINADNN-QLTMLPE--LPTSLEVLSVRNNQLTFLP------ELP--ESLEALDVST---NL 191 (571)
T ss_dssp S-CCSCCCC---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCSCCC------CCC--TTCCEEECCS---SC
T ss_pred C-cCCCCCC---cCccccEEeCCCC-ccCcCCC--cCCCcCEEECCCCCCCCcc------hhh--CCCCEEECcC---CC
Confidence 6 5555665 5677777777664 4555654 4567777777776665422 222 6777777776 35
Q ss_pred ceecCCCCCCCccCCCCc-------ceEEeecCCCCCccC-CCCCCCCCCEEeccCCC
Q 039619 270 VVSFPPEKDTGKALPASL-------KHLSIWNFPNLERIS-SIENLTSFESLQLCCCP 319 (459)
Q Consensus 270 l~~l~~~~~~~~~~~~~L-------~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~ 319 (459)
+..+|. + . .+| +.|++++ |.++.+| .+..+++|+.|++++|+
T Consensus 192 L~~lp~-~-----~-~~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 192 LESLPA-V-----P-VRNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CSSCCC-C-----C---------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred CCchhh-H-----H-HhhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCc
Confidence 556665 3 1 255 7777776 5666666 55566677777776653
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.44 E-value=5.9e-13 Score=119.00 Aligned_cols=145 Identities=14% Similarity=0.170 Sum_probs=97.0
Q ss_pred eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeecc
Q 039619 110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFI 189 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 189 (459)
|++|++++ ..++.+| ....+++|++|++++| .+..++....+ ++|++|+++++..-...+..+..+++|++|++++
T Consensus 46 L~~L~l~~-n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 46 LTYITLAN-INVTDLT-GIEYAHNIKDLTINNI-HATNYNPISGL-SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp CCEEEEES-SCCSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTC-TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred ccEEeccC-CCccChH-HHhcCCCCCEEEccCC-CCCcchhhhcC-CCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 66666665 3555666 4555568888888886 66666655667 8888888888543333567788888888888888
Q ss_pred ccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeC
Q 039619 190 CQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFG 264 (459)
Q Consensus 190 c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~ 264 (459)
|.-....|..+..+++|++|++++|..++.++....+++|++|+++++.+++.. .+..+++|++|++++
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~------~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR------GIEDFPKLNQLYAFS 190 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT------TGGGCSSCCEEEECB
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH------HhccCCCCCEEEeeC
Confidence 744434566677888888888888765666654344566666666665555432 345566666666665
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.41 E-value=5e-13 Score=139.66 Aligned_cols=140 Identities=19% Similarity=0.255 Sum_probs=72.1
Q ss_pred eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeecc
Q 039619 110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFI 189 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 189 (459)
|+.|++++ ..+..++ .+..+++|+.|+|++| .+..++....+ ++|+.|++++| .+..+| .+..+++|+.|++++
T Consensus 45 L~~L~l~~-n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~l~~l-~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 45 IDQIIANN-SDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKPLTNL-KNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEH 118 (605)
T ss_dssp CCCCBCTT-CCCCCCT-TGGGCTTCCEEECTTS-CCCCCGGGGGC-TTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTT
T ss_pred CCEEECcC-CCCCCCh-HHccCCCCCEEEeeCC-CCCCChhhccC-CCCCEEECcCC-CCCCCh-hhccCCCCCEEEecC
Confidence 56666654 3455555 3444456666666653 34444434445 56666666654 344443 455566666666665
Q ss_pred ccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeC
Q 039619 190 CQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFG 264 (459)
Q Consensus 190 c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~ 264 (459)
| .+..++ .+..+++|+.|++++| .+..++....+++|+.|+++++.+.... .+..+++|+.|++++
T Consensus 119 N-~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~~~------~l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 119 N-GISDIN-GLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIV------PLAGLTKLQNLYLSK 184 (605)
T ss_dssp S-CCCCCG-GGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSCCCCCG------GGTTCTTCCEEECCS
T ss_pred C-CCCCCc-cccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCcCCCch------hhccCCCCCEEECcC
Confidence 5 344442 3455566666666554 2334433334455555555555554333 234555555555555
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.40 E-value=8.1e-13 Score=118.10 Aligned_cols=145 Identities=16% Similarity=0.174 Sum_probs=68.4
Q ss_pred cccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCcc-ccC-CCCCCCccEEE
Q 039619 156 KALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGS-FTA-NCFPTNLASVC 233 (459)
Q Consensus 156 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~-lp~-~~~~~~L~~L~ 233 (459)
++|++|+++++ .+..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|. +.. .+. ...+++|++|+
T Consensus 44 ~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEEE
T ss_pred CCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEEE
Confidence 55555555553 344444 4555555666666555 333332 44455555555555532 222 111 12344455555
Q ss_pred EecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCEE
Q 039619 234 IDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFESL 313 (459)
Q Consensus 234 l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L 313 (459)
++++.+.... +. .+..+++|++|++++ |..+..++. + ..+++|++|++++ +.++.++.+..+++|++|
T Consensus 119 Ls~n~i~~~~-~~---~l~~l~~L~~L~L~~--n~~i~~~~~-l----~~l~~L~~L~l~~-n~i~~~~~l~~l~~L~~L 186 (197)
T 4ezg_A 119 ISHSAHDDSI-LT---KINTLPKVNSIDLSY--NGAITDIMP-L----KTLPELKSLNIQF-DGVHDYRGIEDFPKLNQL 186 (197)
T ss_dssp CCSSBCBGGG-HH---HHTTCSSCCEEECCS--CTBCCCCGG-G----GGCSSCCEEECTT-BCCCCCTTGGGCSSCCEE
T ss_pred ecCCccCcHh-HH---HHhhCCCCCEEEccC--CCCccccHh-h----cCCCCCCEEECCC-CCCcChHHhccCCCCCEE
Confidence 5444444322 22 345556666666665 333444432 1 1344555555555 344444444444555555
Q ss_pred eccC
Q 039619 314 QLCC 317 (459)
Q Consensus 314 ~l~~ 317 (459)
++++
T Consensus 187 ~l~~ 190 (197)
T 4ezg_A 187 YAFS 190 (197)
T ss_dssp EECB
T ss_pred EeeC
Confidence 5544
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.40 E-value=1.9e-14 Score=139.66 Aligned_cols=218 Identities=13% Similarity=0.108 Sum_probs=152.4
Q ss_pred eeEEEEecCCCCccccCCcccc--ccCcEEEeecCCCceee-ccccccccccceEEeecccCCcc-ccccCCCCCcccEE
Q 039619 110 VYQLQIIPCPSLTSLWSKSELP--ATLENIYVDRCSKLAFL-SLRGNLSKALKHLYIISCSNLES-IAEGLDDNTSLETM 185 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~~~~~--~~L~~L~l~~c~~l~~l-~~~~~lp~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L 185 (459)
++.++++++ .+. +...... ++++.|++.++. +... +....+ ++|++|++++|..-.. ++..+..+++|++|
T Consensus 49 ~~~l~l~~~-~~~--~~~~~~~~~~~l~~L~l~~n~-l~~~~~~~~~~-~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGK-NLH--PDVTGRLLSQGVIAFRCPRSF-MDQPLAEHFSP-FRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTC-BCC--HHHHHHHHHTTCSEEECTTCE-ECSCCCSCCCC-BCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccc-cCC--HHHHHhhhhccceEEEcCCcc-ccccchhhccC-CCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 788888764 332 2122222 689999998853 4333 333567 8999999999753223 67778889999999
Q ss_pred eeccccCcccCcccCCCCCCccEEeeccCCCCcc--ccCC-CCCCCccEEEEecC-cccccccccCCCCCCCCC-ccCEE
Q 039619 186 EIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGS--FTAN-CFPTNLASVCIDYE-KIYKPLILERGPGLHRFT-SVRLL 260 (459)
Q Consensus 186 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~--lp~~-~~~~~L~~L~l~~~-~l~~~~~~~~~~~l~~l~-~L~~L 260 (459)
++++|......+..+..+++|++|++++|..++. ++.. ..+++|++|+++++ .+++...+. .+..++ +|++|
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~---~~~~l~~~L~~L 200 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV---AVAHVSETITQL 200 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH---HHHHSCTTCCEE
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH---HHHhcccCCCEE
Confidence 9999954445666778899999999999866653 4432 34789999999997 876431122 457788 99999
Q ss_pred EEeCCcCC-Cc--eecCCCCCCCccCCCCcceEEeecCCCCCc-cC-CCCCCCCCCEEeccCCCCCCcCC--CCCCCCCc
Q 039619 261 TLFGGECC-GV--VSFPPEKDTGKALPASLKHLSIWNFPNLER-IS-SIENLTSFESLQLCCCPKLQKFP--DNGLPTSL 333 (459)
Q Consensus 261 ~l~~~~c~-~l--~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~-l~-~l~~l~~L~~L~l~~c~~l~~lp--~~~l~~sL 333 (459)
++++ |. .+ ..++... ..+++|++|++++|..++. .+ .+..+++|++|++++|..+.... .-.-+++|
T Consensus 201 ~l~~--~~~~~~~~~l~~~~----~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L 274 (336)
T 2ast_B 201 NLSG--YRKNLQKSDLSTLV----RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 274 (336)
T ss_dssp ECCS--CGGGSCHHHHHHHH----HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred EeCC--CcccCCHHHHHHHH----hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCC
Confidence 9999 53 23 3333322 2567999999999765653 33 77788999999999987443211 11126899
Q ss_pred ceEEeeCC
Q 039619 334 LRLEIYGC 341 (459)
Q Consensus 334 ~~L~i~~c 341 (459)
++|++++|
T Consensus 275 ~~L~l~~~ 282 (336)
T 2ast_B 275 KTLQVFGI 282 (336)
T ss_dssp CEEECTTS
T ss_pred CEEeccCc
Confidence 99999998
No 94
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.40 E-value=6.8e-12 Score=131.87 Aligned_cols=218 Identities=14% Similarity=0.067 Sum_probs=155.4
Q ss_pred CCcCceEEeCCCCC--CCCCccc-eeEEEEecCCCCccc---cCCccccccCcEEEeecCCCceeeccccccccccceEE
Q 039619 89 VTLKDPEVLDCPVC--YEPLTIP-VYQLQIIPCPSLTSL---WSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLY 162 (459)
Q Consensus 89 ~~L~~L~l~~c~~l--~~l~~lp-L~~L~l~~c~~l~~l---p~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~ 162 (459)
..|+.+++.+.... .....+| |+.|+++++ .+... +.......+|+.|++..+......+....+ ++|+.++
T Consensus 349 ~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l-~~L~~l~ 426 (635)
T 4g8a_A 349 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGL-EQLEHLD 426 (635)
T ss_dssp TTCCEEEEESCCSCCBCCCCBCTTCCEEECCSS-CCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTC-TTCCEEE
T ss_pred hhhhhcccccccCCCCcccccccccccchhhcc-ccccccccccchhhhhhhhhhhcccccccccccccccc-ccccchh
Confidence 47888888875211 1122344 899999874 44322 212233468999999876433333344566 8999999
Q ss_pred eecccCCcccc-ccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcc
Q 039619 163 IISCSNLESIA-EGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKI 239 (459)
Q Consensus 163 l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l 239 (459)
+..+......+ ..+..+++++.++++.+......+..+..+++|+.|+++++.....+... ..+++|++|+++++++
T Consensus 427 l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L 506 (635)
T 4g8a_A 427 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 506 (635)
T ss_dssp CTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred hhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCcc
Confidence 98765444333 45677899999999987544445566778999999999988655544333 4578999999999888
Q ss_pred cccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCC-CCCCEEecc
Q 039619 240 YKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENL-TSFESLQLC 316 (459)
Q Consensus 240 ~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l-~~L~~L~l~ 316 (459)
+... +. .+.++++|++|++++ +.+..++... ...+++|++|++++ +.++.++ .+..+ ++|++|+++
T Consensus 507 ~~l~-~~---~f~~l~~L~~L~Ls~---N~l~~l~~~~---~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 507 EQLS-PT---AFNSLSSLQVLNMSH---NNFFSLDTFP---YKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLT 575 (635)
T ss_dssp CEEC-TT---TTTTCTTCCEEECTT---SCCCBCCCGG---GTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEECT
T ss_pred CCcC-hH---HHcCCCCCCEEECCC---CcCCCCChhH---HhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEEee
Confidence 7655 55 789999999999998 5777776542 12578999999999 7888876 67777 689999999
Q ss_pred CCC
Q 039619 317 CCP 319 (459)
Q Consensus 317 ~c~ 319 (459)
+++
T Consensus 576 ~Np 578 (635)
T 4g8a_A 576 QND 578 (635)
T ss_dssp TCC
T ss_pred CCC
Confidence 865
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.39 E-value=7.3e-13 Score=138.43 Aligned_cols=182 Identities=18% Similarity=0.226 Sum_probs=142.6
Q ss_pred CCccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCccc
Q 039619 120 SLTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNG 199 (459)
Q Consensus 120 ~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~ 199 (459)
.+..+. ....+.+|+.|+++++ .+..++....+ ++|+.|+|++| .+..++. +..+++|+.|++++| .+..+| .
T Consensus 32 ~i~~~~-~~~~L~~L~~L~l~~n-~i~~l~~l~~l-~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~ 104 (605)
T 1m9s_A 32 SVTDAV-TQNELNSIDQIIANNS-DIKSVQGIQYL-PNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-S 104 (605)
T ss_dssp CTTSEE-CHHHHTTCCCCBCTTC-CCCCCTTGGGC-TTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCT-T
T ss_pred Cccccc-chhcCCCCCEEECcCC-CCCCChHHccC-CCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC-CCCCCh-h
Confidence 344444 2334569999999885 57777766778 99999999986 5677765 888999999999998 666665 6
Q ss_pred CCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCC
Q 039619 200 LRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDT 279 (459)
Q Consensus 200 l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~ 279 (459)
+..+++|+.|++++| .+..++....+++|+.|+++++.+.... .+..+++|+.|++++ +.+..++. +
T Consensus 105 l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~Ls~---N~l~~~~~-l-- 171 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNNKITDIT------VLSRLTKLDTLSLED---NQISDIVP-L-- 171 (605)
T ss_dssp STTCTTCCEEECTTS-CCCCCGGGGGCTTCSEEECCSSCCCCCG------GGGSCTTCSEEECCS---SCCCCCGG-G--
T ss_pred hccCCCCCEEEecCC-CCCCCccccCCCccCEEECCCCccCCch------hhcccCCCCEEECcC---CcCCCchh-h--
Confidence 889999999999886 4666665566899999999998887654 678999999999998 35555544 3
Q ss_pred CccCCCCcceEEeecCCCCCccCCCCCCCCCCEEeccCCCCCCcCC
Q 039619 280 GKALPASLKHLSIWNFPNLERISSIENLTSFESLQLCCCPKLQKFP 325 (459)
Q Consensus 280 ~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~lp 325 (459)
..+++|+.|+|++ +.+..++.+..+++|+.|++++|+ +...|
T Consensus 172 --~~l~~L~~L~Ls~-N~i~~l~~l~~l~~L~~L~L~~N~-l~~~p 213 (605)
T 1m9s_A 172 --AGLTKLQNLYLSK-NHISDLRALAGLKNLDVLELFSQE-CLNKP 213 (605)
T ss_dssp --TTCTTCCEEECCS-SCCCBCGGGTTCTTCSEEECCSEE-EECCC
T ss_pred --ccCCCCCEEECcC-CCCCCChHHccCCCCCEEEccCCc-CcCCc
Confidence 2778999999999 688888878889999999999864 44444
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=4.1e-13 Score=125.84 Aligned_cols=163 Identities=14% Similarity=0.201 Sum_probs=99.9
Q ss_pred cCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeec
Q 039619 133 TLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQ 212 (459)
Q Consensus 133 ~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 212 (459)
++..+++++ ..+++++....+ ++|++|+++++ .++.++ .+..+++|++|+++++ .+..++. +..+++|++|+++
T Consensus 20 ~l~~l~l~~-~~i~~~~~~~~l-~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGK-QSVTDLVSQKEL-SGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTC-SCTTSEECHHHH-TTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHhcC-CCcccccchhhc-CcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECC
Confidence 455555554 345555433455 67777777775 566665 5666777777777776 5556655 6677777777777
Q ss_pred cCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEe
Q 039619 213 DCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSI 292 (459)
Q Consensus 213 ~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l 292 (459)
++ .++.++.... ++|++|+++++.++... .+..+++|+.|++++ +.+..++. . ..+++|+.|++
T Consensus 94 ~N-~l~~l~~~~~-~~L~~L~L~~N~l~~~~------~l~~l~~L~~L~Ls~---N~i~~~~~-l----~~l~~L~~L~L 157 (263)
T 1xeu_A 94 RN-RLKNLNGIPS-ACLSRLFLDNNELRDTD------SLIHLKNLEILSIRN---NKLKSIVM-L----GFLSKLEVLDL 157 (263)
T ss_dssp SS-CCSCCTTCCC-SSCCEEECCSSCCSBSG------GGTTCTTCCEEECTT---SCCCBCGG-G----GGCTTCCEEEC
T ss_pred CC-ccCCcCcccc-CcccEEEccCCccCCCh------hhcCcccccEEECCC---CcCCCChH-H----ccCCCCCEEEC
Confidence 64 4555554433 66777777776665433 456677777777776 34555542 2 14566666666
Q ss_pred ecCCCCCccCCCCCCCCCCEEeccCC
Q 039619 293 WNFPNLERISSIENLTSFESLQLCCC 318 (459)
Q Consensus 293 ~~c~~l~~l~~l~~l~~L~~L~l~~c 318 (459)
++ +.++.++.+..+++|+.|+++++
T Consensus 158 ~~-N~i~~~~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 158 HG-NEITNTGGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp TT-SCCCBCTTSTTCCCCCEEEEEEE
T ss_pred CC-CcCcchHHhccCCCCCEEeCCCC
Confidence 66 45555555555666666666653
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=7e-12 Score=129.76 Aligned_cols=176 Identities=19% Similarity=0.209 Sum_probs=141.0
Q ss_pred ccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEee
Q 039619 132 ATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLI 211 (459)
Q Consensus 132 ~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 211 (459)
.+|+.|+++++ .++.+|.. ++++|++|+++++ .++.+| ..+++|++|++++| .++.+|. +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n-~L~~lp~~--l~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSSLPDN--LPPQITVLEITQN-ALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSS-CCSCCCSC--CCTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCC-CCCccCHh--HcCCCCEEECcCC-CCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEEC
Confidence 48999999985 67778743 2389999999995 677888 45799999999998 6777887 654 9999999
Q ss_pred ccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEE
Q 039619 212 QDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLS 291 (459)
Q Consensus 212 ~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~ 291 (459)
+++ .++.+|. .+++|+.|++++|.++... . .+++|++|++++ +.+..+|. + . ++|+.|+
T Consensus 128 s~N-~l~~lp~--~l~~L~~L~Ls~N~l~~lp------~--~l~~L~~L~Ls~---N~L~~lp~-l-----~-~~L~~L~ 186 (571)
T 3cvr_A 128 DNN-QLTMLPE--LPALLEYINADNNQLTMLP------E--LPTSLEVLSVRN---NQLTFLPE-L-----P-ESLEALD 186 (571)
T ss_dssp CSS-CCSCCCC--CCTTCCEEECCSSCCSCCC------C--CCTTCCEEECCS---SCCSCCCC-C-----C-TTCCEEE
T ss_pred CCC-cCCCCCC--cCccccEEeCCCCccCcCC------C--cCCCcCEEECCC---CCCCCcch-h-----h-CCCCEEE
Confidence 885 5777887 7899999999999988533 2 678999999999 46777887 5 3 8999999
Q ss_pred eecCCCCCccCCCCCCCCC-------CEEeccCCCCCCcCCCCC-CCCCcceEEeeCCch
Q 039619 292 IWNFPNLERISSIENLTSF-------ESLQLCCCPKLQKFPDNG-LPTSLLRLEIYGCPL 343 (459)
Q Consensus 292 l~~c~~l~~l~~l~~l~~L-------~~L~l~~c~~l~~lp~~~-l~~sL~~L~i~~c~~ 343 (459)
+++ +.++.+|.+.. +| +.|++++| .++.+|... -+++|+.|++++++.
T Consensus 187 Ls~-N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 187 VST-NLLESLPAVPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CCS-SCCSSCCCCC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred CcC-CCCCchhhHHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence 999 78998885322 67 99999984 788898732 278999999999963
No 98
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.37 E-value=2.8e-14 Score=149.29 Aligned_cols=218 Identities=11% Similarity=0.052 Sum_probs=141.5
Q ss_pred eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeecc---ccccccccceEEeecccCCccccccCCCCCcccEEe
Q 039619 110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL---RGNLSKALKHLYIISCSNLESIAEGLDDNTSLETME 186 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~---~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~ 186 (459)
|+.|++.++ ....+|.....+++|++|++++|. +..... ...+ ++|++|++.++..-..++..+..+++|++|+
T Consensus 272 L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~-~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 272 LCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKC-PNLEVLETRNVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp CCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTC-TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred ccccCcccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhC-cCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence 677777653 344566555666799999999986 543322 2567 8999999985433333444445688999999
Q ss_pred ecc----------ccCccc--CcccCCCCCCccEEeeccCCCCccccCC---CCCCCccEEEEec----Ccccccc----
Q 039619 187 IFI----------CQNLKA--LPNGLRNLTSLQYLLIQDCPTIGSFTAN---CFPTNLASVCIDY----EKIYKPL---- 243 (459)
Q Consensus 187 l~~----------c~~l~~--lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~~~L~~L~l~~----~~l~~~~---- 243 (459)
+++ |..+.. ++.....+++|++|++ +|+.++..... ..+++|++|++++ +.+++..
T Consensus 349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred eecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 995 766552 2222345889999999 55666442211 1267999999973 5555320
Q ss_pred cccCCCCCCCCCccCEEEEeCCcCCC-cee--cCCCCCCCccCCCCcceEEeecCCCCCc--cC-CCCCCCCCCEEeccC
Q 039619 244 ILERGPGLHRFTSVRLLTLFGGECCG-VVS--FPPEKDTGKALPASLKHLSIWNFPNLER--IS-SIENLTSFESLQLCC 317 (459)
Q Consensus 244 ~~~~~~~l~~l~~L~~L~l~~~~c~~-l~~--l~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~-~l~~l~~L~~L~l~~ 317 (459)
.+. .+.++++|++|+++. |.+ +.. +.... ..+++|++|++++| .++. ++ .+..+++|++|++++
T Consensus 428 ~~~---~~~~~~~L~~L~L~~--~~~~l~~~~~~~~~----~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~ 497 (592)
T 3ogk_B 428 VRS---LLIGCKKLRRFAFYL--RQGGLTDLGLSYIG----QYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRG 497 (592)
T ss_dssp HHH---HHHHCTTCCEEEEEC--CGGGCCHHHHHHHH----HSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEES
T ss_pred HHH---HHHhCCCCCEEEEec--CCCCccHHHHHHHH----HhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccC
Confidence 011 245689999999987 553 111 11000 14678999999984 5654 33 457789999999999
Q ss_pred CCCCCc--CCCC-CCCCCcceEEeeCCc
Q 039619 318 CPKLQK--FPDN-GLPTSLLRLEIYGCP 342 (459)
Q Consensus 318 c~~l~~--lp~~-~l~~sL~~L~i~~c~ 342 (459)
|+ ++. ++.. ..+++|++|++++|.
T Consensus 498 n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 498 CC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 97 542 2210 126899999999998
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.31 E-value=2.2e-12 Score=120.82 Aligned_cols=167 Identities=15% Similarity=0.150 Sum_probs=133.0
Q ss_pred ccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEE
Q 039619 153 NLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASV 232 (459)
Q Consensus 153 ~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L 232 (459)
.+ .++..+++++ ..+++++ .+..+++|++|++++| .+..++ .+..+++|++|++++| .+..++....+++|++|
T Consensus 17 ~l-~~l~~l~l~~-~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L 90 (263)
T 1xeu_A 17 GL-ANAVKQNLGK-QSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSPLKDLTKLEEL 90 (263)
T ss_dssp HH-HHHHHHHHTC-SCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEE
T ss_pred HH-HHHHHHHhcC-CCccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChhhccCCCCCEE
Confidence 45 6777888877 4667776 5778899999999998 677887 6889999999999886 57777665668999999
Q ss_pred EEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccCCCCCCCCCCE
Q 039619 233 CIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERISSIENLTSFES 312 (459)
Q Consensus 233 ~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~ 312 (459)
+++++.++... .+.. ++|+.|++++ +.+..++. + ..+++|+.|++++ +.++.++.+..+++|++
T Consensus 91 ~L~~N~l~~l~------~~~~-~~L~~L~L~~---N~l~~~~~-l----~~l~~L~~L~Ls~-N~i~~~~~l~~l~~L~~ 154 (263)
T 1xeu_A 91 SVNRNRLKNLN------GIPS-ACLSRLFLDN---NELRDTDS-L----IHLKNLEILSIRN-NKLKSIVMLGFLSKLEV 154 (263)
T ss_dssp ECCSSCCSCCT------TCCC-SSCCEEECCS---SCCSBSGG-G----TTCTTCCEEECTT-SCCCBCGGGGGCTTCCE
T ss_pred ECCCCccCCcC------cccc-CcccEEEccC---CccCCChh-h----cCcccccEEECCC-CcCCCChHHccCCCCCE
Confidence 99998887543 3344 8999999999 46666654 2 2778999999999 78888887788999999
Q ss_pred EeccCCCCCCcCCCCCCCCCcceEEeeCCc
Q 039619 313 LQLCCCPKLQKFPDNGLPTSLLRLEIYGCP 342 (459)
Q Consensus 313 L~l~~c~~l~~lp~~~l~~sL~~L~i~~c~ 342 (459)
|++++| .++.++...-+++|+.|++++++
T Consensus 155 L~L~~N-~i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 155 LDLHGN-EITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EECTTS-CCCBCTTSTTCCCCCEEEEEEEE
T ss_pred EECCCC-cCcchHHhccCCCCCEEeCCCCc
Confidence 999995 67766443336899999999875
No 100
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.29 E-value=1.8e-14 Score=146.10 Aligned_cols=289 Identities=16% Similarity=0.125 Sum_probs=152.8
Q ss_pred CCCCCCeEeccCCCccCcc---cccCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCCCCCCCcCceEEeCC
Q 039619 23 RFPKRQRSSQQDLDESEYS---EEVEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNGPVSVTLKDPEVLDC 99 (459)
Q Consensus 23 ~f~~L~~L~l~~~~~~~~~---~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~c 99 (459)
.+++|++|++.++.-.... .......+++|++|.++++..- .... ..+. ........+|++|++++|
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~-~~~~-----~~l~----~~l~~~~~~L~~L~L~~n 95 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG-DVGV-----HCVL----QGLQTPSCKIQKLSLQNC 95 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH-HHHH-----HHHH----HTTCSTTCCCCEEECTTS
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC-hHHH-----HHHH----HHHhhCCCceeEEEccCC
Confidence 4789999999887643110 0111234688999999877521 1000 0000 000111226888888886
Q ss_pred CCCCCCC------------ccc-eeEEEEecCCCCccccCC------ccccccCcEEEeecCCCceeec------ccccc
Q 039619 100 PVCYEPL------------TIP-VYQLQIIPCPSLTSLWSK------SELPATLENIYVDRCSKLAFLS------LRGNL 154 (459)
Q Consensus 100 ~~l~~l~------------~lp-L~~L~l~~c~~l~~lp~~------~~~~~~L~~L~l~~c~~l~~l~------~~~~l 154 (459)
.+. .++ |++|+++++. ++..... ....++|++|++++| .+.... ....+
T Consensus 96 ----~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~ 169 (461)
T 1z7x_W 96 ----CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAK 169 (461)
T ss_dssp ----CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHC
T ss_pred ----CCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhC
Confidence 233 122 8888887754 4421100 011236888888776 343321 11334
Q ss_pred ccccceEEeecccCCccc-cccCC-----CCCcccEEeeccccCccc-----CcccCCCCCCccEEeeccCCCCcccc--
Q 039619 155 SKALKHLYIISCSNLESI-AEGLD-----DNTSLETMEIFICQNLKA-----LPNGLRNLTSLQYLLIQDCPTIGSFT-- 221 (459)
Q Consensus 155 p~~L~~L~l~~c~~l~~l-p~~l~-----~l~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~c~~l~~lp-- 221 (459)
++|++|+++++. +... +..+. ..++|++|++++| .+.. ++..+..+++|++|++++|. +....
T Consensus 170 -~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~ 245 (461)
T 1z7x_W 170 -PDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMA 245 (461)
T ss_dssp -TTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHH
T ss_pred -CCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHH
Confidence 678888887754 3322 11111 2457788888777 3332 44555567778888887763 33221
Q ss_pred ---CC--CCCCCccEEEEecCcccccc---cccCCCCCCCCCccCEEEEeCCcCCCce-----ecCCCCCCCccCCCCcc
Q 039619 222 ---AN--CFPTNLASVCIDYEKIYKPL---ILERGPGLHRFTSVRLLTLFGGECCGVV-----SFPPEKDTGKALPASLK 288 (459)
Q Consensus 222 ---~~--~~~~~L~~L~l~~~~l~~~~---~~~~~~~l~~l~~L~~L~l~~~~c~~l~-----~l~~~~~~~~~~~~~L~ 288 (459)
.. ...++|++|+++++.++... ++. .+..+++|++|++++ + .+. .+..... ...++|+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~---~l~~~~~L~~L~Ls~--n-~i~~~~~~~l~~~l~---~~~~~L~ 316 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR---VLRAKESLKELSLAG--N-ELGDEGARLLCETLL---EPGCQLE 316 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH---HHHHCTTCCEEECTT--C-CCHHHHHHHHHHHHT---STTCCCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH---HHhhCCCcceEECCC--C-CCchHHHHHHHHHhc---cCCccce
Confidence 11 12567788888776665421 022 344577778888877 3 322 1111100 0224777
Q ss_pred eEEeecCCCCCcc-----C-CCCCCCCCCEEeccCCCCCCcCCCC----C---CCCCcceEEeeCCc
Q 039619 289 HLSIWNFPNLERI-----S-SIENLTSFESLQLCCCPKLQKFPDN----G---LPTSLLRLEIYGCP 342 (459)
Q Consensus 289 ~L~l~~c~~l~~l-----~-~l~~l~~L~~L~l~~c~~l~~lp~~----~---l~~sL~~L~i~~c~ 342 (459)
+|++++| .++.. + .+..+++|++|++++| .+...... . ..++|++|++++|.
T Consensus 317 ~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 317 SLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp EEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred eeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 7777774 34432 2 3445677777777775 34332110 0 13477777777774
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.29 E-value=3.6e-11 Score=110.07 Aligned_cols=135 Identities=17% Similarity=0.226 Sum_probs=62.2
Q ss_pred CCccccccCCCCCcccEEeeccccCcccC-cccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCccccccc
Q 039619 168 NLESIAEGLDDNTSLETMEIFICQNLKAL-PNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLI 244 (459)
Q Consensus 168 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~ 244 (459)
.++.+|..+. ++|++|+++++. +..+ |..+..+++|++|+++++ .++.++.. ..+++|++|++++|.++...
T Consensus 30 ~l~~ip~~~~--~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~- 104 (229)
T 3e6j_A 30 RHASVPAGIP--TNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLP- 104 (229)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC-
T ss_pred CcCccCCCCC--CCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCccC-
Confidence 3444444332 455555555542 2222 334445555555555443 23333321 11233333333333332221
Q ss_pred ccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCC
Q 039619 245 LERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCC 318 (459)
Q Consensus 245 ~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c 318 (459)
+. .+..+++|++|++++ +.+..+|..+ ..+++|+.|++++ +.++.++ .+..+++|+.|++.++
T Consensus 105 ~~---~~~~l~~L~~L~Ls~---N~l~~lp~~~----~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 105 SA---VFDRLVHLKELFMCC---NKLTELPRGI----ERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp TT---TTTTCTTCCEEECCS---SCCCSCCTTG----GGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred hh---HhCcchhhCeEeccC---CcccccCccc----ccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCC
Confidence 11 345566666666665 3455555544 2445566666655 4555555 3455555555555553
No 102
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.27 E-value=3.1e-14 Score=148.95 Aligned_cols=289 Identities=16% Similarity=0.144 Sum_probs=163.4
Q ss_pred CCCCCCeEeccCCCccCcccc--------------cCCccCCccceeeccccccccccCCCCCCCcccCCCCCCCCC-CC
Q 039619 23 RFPKRQRSSQQDLDESEYSEE--------------VEEEEFPTVQRQARSQETRAADKGGGSKGNKTADPGKRSNNG-PV 87 (459)
Q Consensus 23 ~f~~L~~L~l~~~~~~~~~~~--------------~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l 87 (459)
.|++|++|++.++........ .....+++|++|.+.++. +..... .... .+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~-------------~~l~~~~ 129 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCL-------------ELIAKSF 129 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHH-------------HHHHHHC
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHH-------------HHHHHhC
Confidence 578899998888764322111 112347788888888764 211000 0111 23
Q ss_pred CCCcCceEEeCCCCCCCCCc---------cc-eeEEEEecCCCCcc-----ccCCccccccCcEEEeecCC-Ccee--ec
Q 039619 88 SVTLKDPEVLDCPVCYEPLT---------IP-VYQLQIIPCPSLTS-----LWSKSELPATLENIYVDRCS-KLAF--LS 149 (459)
Q Consensus 88 p~~L~~L~l~~c~~l~~l~~---------lp-L~~L~l~~c~~l~~-----lp~~~~~~~~L~~L~l~~c~-~l~~--l~ 149 (459)
++|++|++++| ..++. +| |++|++++|. ++. ++......++|++|++++|. .+.. ++
T Consensus 130 -~~L~~L~L~~~---~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 130 -KNFKVLVLSSC---EGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp -TTCCEEEEESC---EEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred -CCCcEEeCCCc---CCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 38899999887 33332 23 8888888765 322 33222344688899888875 1111 11
Q ss_pred -cccccccccceEEeecccCCccccccCCCCCcccEEeeccc-------------------cCccc-----------Ccc
Q 039619 150 -LRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFIC-------------------QNLKA-----------LPN 198 (459)
Q Consensus 150 -~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c-------------------~~l~~-----------lp~ 198 (459)
....+ ++|++|++++|..+..++..+..+++|++|++..| .+++. ++.
T Consensus 205 ~l~~~~-~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~ 283 (594)
T 2p1m_B 205 RLVTRC-PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA 283 (594)
T ss_dssp HHHHHC-TTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG
T ss_pred HHHHhC-CCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH
Confidence 11345 78899999888777777777777888888875544 22222 111
Q ss_pred cCCCCCCccEEeeccCCCCccc--cC-CCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCC------cCCC
Q 039619 199 GLRNLTSLQYLLIQDCPTIGSF--TA-NCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGG------ECCG 269 (459)
Q Consensus 199 ~l~~l~~L~~L~l~~c~~l~~l--p~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~------~c~~ 269 (459)
.+..+++|++|++++|. +... .. ...+++|++|++.++ +.+..... ....+++|++|++.++ .|..
T Consensus 284 ~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~---l~~~~~~L~~L~L~~~~~~g~~~~~~ 358 (594)
T 2p1m_B 284 VYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEV---LASTCKDLRELRVFPSEPFVMEPNVA 358 (594)
T ss_dssp GHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHH---HHHHCTTCCEEEEECSCTTCSSCSSC
T ss_pred HHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHH---HHHhCCCCCEEEEecCcccccccCCC
Confidence 12245677777777766 4321 11 134577888888764 22111010 1134677888888540 0222
Q ss_pred ceecCC-CCCCCccCCCCcceEEeecCCCCCccC--CC-CCCCCCCEEecc-----CCCCCCcCCCC-C------CCCCc
Q 039619 270 VVSFPP-EKDTGKALPASLKHLSIWNFPNLERIS--SI-ENLTSFESLQLC-----CCPKLQKFPDN-G------LPTSL 333 (459)
Q Consensus 270 l~~l~~-~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l-~~l~~L~~L~l~-----~c~~l~~lp~~-~------l~~sL 333 (459)
+..... .. ...+++|++|.+. |+.++... .+ ..+++|++|+++ +|..++..|.. + -+++|
T Consensus 359 l~~~~l~~l---~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L 434 (594)
T 2p1m_B 359 LTEQGLVSV---SMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDL 434 (594)
T ss_dssp CCHHHHHHH---HHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTC
T ss_pred CCHHHHHHH---HHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCc
Confidence 211000 00 0024678888554 46666433 22 257899999998 67788766531 1 15789
Q ss_pred ceEEeeC
Q 039619 334 LRLEIYG 340 (459)
Q Consensus 334 ~~L~i~~ 340 (459)
++|++.+
T Consensus 435 ~~L~L~~ 441 (594)
T 2p1m_B 435 RRLSLSG 441 (594)
T ss_dssp CEEECCS
T ss_pred cEEeecC
Confidence 9999976
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.27 E-value=1.6e-11 Score=120.37 Aligned_cols=120 Identities=13% Similarity=0.114 Sum_probs=58.1
Q ss_pred cEEEeecCCCceeeccccccccccceEEeecccCCcccccc-CC-CCCcccEEeeccccCcccCc-ccCCCCCCccEEee
Q 039619 135 ENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEG-LD-DNTSLETMEIFICQNLKALP-NGLRNLTSLQYLLI 211 (459)
Q Consensus 135 ~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~-l~-~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l 211 (459)
+.+++++ ..++.+|. .+|+.++.|+++++ .++.++.. +. .+++|++|+++++ .+..++ ..+..+++|++|++
T Consensus 21 ~~l~c~~-~~l~~iP~--~~~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSK-QQLPNVPQ--SLPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCS-SCCSSCCS--SCCTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCC-CCcCccCc--cCCCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEEC
Confidence 4455544 34555552 23355666666653 45555433 33 5666666666665 344443 34556666666666
Q ss_pred ccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeC
Q 039619 212 QDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFG 264 (459)
Q Consensus 212 ~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~ 264 (459)
+++ .++.++.. ..+++|++|++++|.+.... +. .+..+++|+.|++++
T Consensus 96 s~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~---~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 96 SSN-HLHTLDEFLFSDLQALEVLLLYNNHIVVVD-RN---AFEDMAQLQKLYLSQ 145 (361)
T ss_dssp CSS-CCCEECTTTTTTCTTCCEEECCSSCCCEEC-TT---TTTTCTTCCEEECCS
T ss_pred CCC-cCCcCCHHHhCCCcCCCEEECCCCcccEEC-HH---HhCCcccCCEEECCC
Confidence 553 34444432 12344444444444333221 22 344555555555554
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.21 E-value=2.3e-10 Score=104.04 Aligned_cols=144 Identities=15% Similarity=0.250 Sum_probs=81.2
Q ss_pred eEEeecccCCccccccCCCCCcccEEeeccccCcccCcc-cCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCc
Q 039619 160 HLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPN-GLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEK 238 (459)
Q Consensus 160 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~ 238 (459)
.++.++ ..++.+|..+. ++|+.|+++++ .++.++. .+..+++|+.|+++++ .+..+.
T Consensus 15 ~v~c~~-~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~----------------- 72 (220)
T 2v9t_B 15 IVDCRG-KGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNN-QISELA----------------- 72 (220)
T ss_dssp EEECTT-SCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSS-CCCEEC-----------------
T ss_pred EEEcCC-CCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCC-cCCCcC-----------------
Confidence 444444 34556665443 56666666665 3444433 4555666666666553 233332
Q ss_pred ccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEecc
Q 039619 239 IYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLC 316 (459)
Q Consensus 239 l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~ 316 (459)
+. .+.++++|++|++++ +.+..+|... ...+++|++|++++ +.++.++ .+..+++|++|+++
T Consensus 73 ------~~---~~~~l~~L~~L~Ls~---N~l~~l~~~~---f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 73 ------PD---AFQGLRSLNSLVLYG---NKITELPKSL---FEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLY 136 (220)
T ss_dssp ------TT---TTTTCSSCCEEECCS---SCCCCCCTTT---TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECC
T ss_pred ------HH---HhhCCcCCCEEECCC---CcCCccCHhH---ccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECC
Confidence 22 456666666666666 4555555532 01356667777766 5666664 56667777777777
Q ss_pred CCCCCCcCCCCCC--CCCcceEEeeCCc
Q 039619 317 CCPKLQKFPDNGL--PTSLLRLEIYGCP 342 (459)
Q Consensus 317 ~c~~l~~lp~~~l--~~sL~~L~i~~c~ 342 (459)
++ .++.++...+ +++|+.|++++++
T Consensus 137 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 137 DN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp SS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 63 5666654322 4667777776654
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.19 E-value=1.5e-10 Score=104.08 Aligned_cols=125 Identities=24% Similarity=0.316 Sum_probs=61.1
Q ss_pred cccCcEEEeecCCCceeecc--ccccccccceEEeecccCCcccccc-CCCCCcccEEeeccccCcccCccc-CCCCCCc
Q 039619 131 PATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESIAEG-LDDNTSLETMEIFICQNLKALPNG-LRNLTSL 206 (459)
Q Consensus 131 ~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L 206 (459)
+++|++|+++++ .++.++. ...+ ++|++|+++++ .++.++.. +..+++|++|+++++ .+..+|.. +..+++|
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~~~~l-~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPNGVFDEL-TSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQL 102 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTC-TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCCCcEEEcCCC-ccCcCChhhhccc-ccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCC
Confidence 346666666663 4444442 2345 56666666653 44444432 355666666666655 34444432 3556666
Q ss_pred cEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeC
Q 039619 207 QYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFG 264 (459)
Q Consensus 207 ~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~ 264 (459)
++|+++++ .++.++.. ..+++|++|+++++.++... +. .+..+++|++|++++
T Consensus 103 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~---~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 103 KELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVP-DG---VFDRLTSLQYIWLHD 157 (208)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TT---TTTTCTTCCEEECCS
T ss_pred CEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccceeC-HH---HhccCCCccEEEecC
Confidence 66666553 34444432 22344555555444443222 11 234445555555554
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.18 E-value=3e-10 Score=103.87 Aligned_cols=145 Identities=21% Similarity=0.247 Sum_probs=114.1
Q ss_pred ccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCE
Q 039619 182 LETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRL 259 (459)
Q Consensus 182 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~ 259 (459)
.+.++.++. .+..+|..+ .++|++|+++++. +..++.. ..+++|++|+++++.+.... +. .+..+++|+.
T Consensus 21 ~~~v~c~~~-~l~~ip~~~--~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~---~~~~l~~L~~ 92 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAGI--PTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQLGALP-VG---VFDSLTQLTV 92 (229)
T ss_dssp TTEEECTTS-CCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCC-TT---TTTTCTTCCE
T ss_pred CCEeEccCC-CcCccCCCC--CCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCCCCCcC-hh---hcccCCCcCE
Confidence 456776654 678888765 3899999999864 5555433 45789999999998886543 33 5788999999
Q ss_pred EEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceE
Q 039619 260 LTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS-SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRL 336 (459)
Q Consensus 260 L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L 336 (459)
|++++ +.+..++... ...+++|++|++++ +.++.+| .+..+++|++|+++++ +++.++...+ +++|+.|
T Consensus 93 L~Ls~---N~l~~l~~~~---~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 93 LDLGT---NQLTVLPSAV---FDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp EECCS---SCCCCCCTTT---TTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred EECCC---CcCCccChhH---hCcchhhCeEeccC-CcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEE
Confidence 99998 5777777643 12678999999999 8899999 8899999999999984 7888886433 6899999
Q ss_pred EeeCCc
Q 039619 337 EIYGCP 342 (459)
Q Consensus 337 ~i~~c~ 342 (459)
++.+++
T Consensus 165 ~l~~N~ 170 (229)
T 3e6j_A 165 YLFGNP 170 (229)
T ss_dssp ECTTSC
T ss_pred EeeCCC
Confidence 998875
No 107
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.17 E-value=3.7e-13 Score=136.32 Aligned_cols=222 Identities=18% Similarity=0.211 Sum_probs=118.0
Q ss_pred cCcEEEeecCCCcee-----ec-cccccccccceEEeecccCCccc-----ccc-CCCCCcccEEeeccccCcc-----c
Q 039619 133 TLENIYVDRCSKLAF-----LS-LRGNLSKALKHLYIISCSNLESI-----AEG-LDDNTSLETMEIFICQNLK-----A 195 (459)
Q Consensus 133 ~L~~L~l~~c~~l~~-----l~-~~~~lp~~L~~L~l~~c~~l~~l-----p~~-l~~l~~L~~L~l~~c~~l~-----~ 195 (459)
+|++|++++|. +.. ++ ....+ ++|++|+++++. +... ... ....++|++|++++|. +. .
T Consensus 86 ~L~~L~L~~n~-i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~ 161 (461)
T 1z7x_W 86 KIQKLSLQNCC-LTGAGCGVLSSTLRTL-PTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEP 161 (461)
T ss_dssp CCCEEECTTSC-CBGGGHHHHHHHTTSC-TTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHH
T ss_pred ceeEEEccCCC-CCHHHHHHHHHHHccC-CceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHH
Confidence 57777777653 332 22 12345 677777777653 3321 111 1224567777777763 32 2
Q ss_pred CcccCCCCCCccEEeeccCCCCccccCCC-------CCCCccEEEEecCcccccc---cccCCCCCCCCCccCEEEEeCC
Q 039619 196 LPNGLRNLTSLQYLLIQDCPTIGSFTANC-------FPTNLASVCIDYEKIYKPL---ILERGPGLHRFTSVRLLTLFGG 265 (459)
Q Consensus 196 lp~~l~~l~~L~~L~l~~c~~l~~lp~~~-------~~~~L~~L~l~~~~l~~~~---~~~~~~~l~~l~~L~~L~l~~~ 265 (459)
++..+..+++|++|++++|. +....... ..++|++|+++++.++... ++. .+..+++|++|++++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~---~l~~~~~L~~L~Ls~- 236 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG---IVASKASLRELALGS- 236 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH---HHHHCTTCCEEECCS-
T ss_pred HHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH---HHHhCCCccEEeccC-
Confidence 23444556777777777654 33221110 1347788888776665420 022 345677888888887
Q ss_pred cCCCcee-----cCCCCCCCccCCCCcceEEeecCCCCCc-----cC-CCCCCCCCCEEeccCCCCCCcCCCC-------
Q 039619 266 ECCGVVS-----FPPEKDTGKALPASLKHLSIWNFPNLER-----IS-SIENLTSFESLQLCCCPKLQKFPDN------- 327 (459)
Q Consensus 266 ~c~~l~~-----l~~~~~~~~~~~~~L~~L~l~~c~~l~~-----l~-~l~~l~~L~~L~l~~c~~l~~lp~~------- 327 (459)
| .+.. +..... ...++|++|++++| .++. ++ .+..+++|++|++++| .+......
T Consensus 237 -n-~l~~~~~~~l~~~~~---~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~ 309 (461)
T 1z7x_W 237 -N-KLGDVGMAELCPGLL---HPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLL 309 (461)
T ss_dssp -S-BCHHHHHHHHHHHHT---STTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHT
T ss_pred -C-cCChHHHHHHHHHHh---cCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhc
Confidence 3 3222 111110 13567888888884 6665 44 5556788888888876 34321100
Q ss_pred CCCCCcceEEeeCCchhHHhhhcCcCCccccccCCCeEEeCcee
Q 039619 328 GLPTSLLRLEIYGCPLIEERFEKDKGQYWSLIADIPCVRIDCHY 371 (459)
Q Consensus 328 ~l~~sL~~L~i~~c~~L~~~~~~~~~~~~~~i~~i~~l~~~~~~ 371 (459)
...++|++|++++|.--...+.. -........++..+.+.++.
T Consensus 310 ~~~~~L~~L~L~~n~l~~~~~~~-l~~~l~~~~~L~~L~Ls~n~ 352 (461)
T 1z7x_W 310 EPGCQLESLWVKSCSFTAACCSH-FSSVLAQNRFLLELQISNNR 352 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHH-HHHHHHHCSSCCEEECCSSB
T ss_pred cCCccceeeEcCCCCCchHHHHH-HHHHHhhCCCccEEEccCCc
Confidence 01258888888888521111000 00012234577788888773
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.17 E-value=2.5e-10 Score=103.71 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=32.7
Q ss_pred CCCCCCccCEEEEeCCcCCCceecC-CCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCC
Q 039619 250 GLHRFTSVRLLTLFGGECCGVVSFP-PEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCC 318 (459)
Q Consensus 250 ~l~~l~~L~~L~l~~~~c~~l~~l~-~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c 318 (459)
.+..+++|++|++++ +.+..++ ..+ ..+++|++|++++ +.++.++ .+..+++|++|+++++
T Consensus 100 ~~~~l~~L~~L~Ls~---N~l~~~~~~~~----~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 100 MFKGLESLKTLMLRS---NRITCVGNDSF----IGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp GGTTCSSCCEEECTT---SCCCCBCTTSS----TTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred HhcCCcCCCEEECCC---CcCCeECHhHc----CCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCc
Confidence 345566666666665 3444442 222 1345566666665 4555553 5555666666666654
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.17 E-value=1.8e-10 Score=112.86 Aligned_cols=167 Identities=19% Similarity=0.194 Sum_probs=127.1
Q ss_pred cceEEeecccCCccccccCCCCCcccEEeeccccCcccCccc-CC-CCCCccEEeeccCCCCccccCC--CCCCCccEEE
Q 039619 158 LKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNG-LR-NLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVC 233 (459)
Q Consensus 158 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-l~-~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~ 233 (459)
-+.+++++ ..++.+|..+. +.++.|+++++ .+..++.. +. .+++|+.|+++++ .+..++.. ..+++|++|+
T Consensus 20 ~~~l~c~~-~~l~~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 20 SNILSCSK-QQLPNVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TTEEECCS-SCCSSCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEE
T ss_pred CCEEEeCC-CCcCccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEE
Confidence 35677776 47888987663 57999999997 56666554 55 8999999999885 57777654 4478999999
Q ss_pred EecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecC-CCCCCCccCCCCcceEEeecCCCCCccC-C-C---CCC
Q 039619 234 IDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFP-PEKDTGKALPASLKHLSIWNFPNLERIS-S-I---ENL 307 (459)
Q Consensus 234 l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~-~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~-l---~~l 307 (459)
+++|.++... +. .+..+++|+.|++++ +.+..++ ..+ ..+++|+.|++++ +.++.+| . + ..+
T Consensus 95 Ls~N~l~~~~-~~---~~~~l~~L~~L~L~~---N~i~~~~~~~~----~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l 162 (361)
T 2xot_A 95 LSSNHLHTLD-EF---LFSDLQALEVLLLYN---NHIVVVDRNAF----EDMAQLQKLYLSQ-NQISRFPVELIKDGNKL 162 (361)
T ss_dssp CCSSCCCEEC-TT---TTTTCTTCCEEECCS---SCCCEECTTTT----TTCTTCCEEECCS-SCCCSCCGGGTC----C
T ss_pred CCCCcCCcCC-HH---HhCCCcCCCEEECCC---CcccEECHHHh----CCcccCCEEECCC-CcCCeeCHHHhcCcccC
Confidence 9998887554 33 678999999999999 4666664 334 3678999999999 8999998 3 3 679
Q ss_pred CCCCEEeccCCCCCCcCCCCCC--CCC--cceEEeeCCc
Q 039619 308 TSFESLQLCCCPKLQKFPDNGL--PTS--LLRLEIYGCP 342 (459)
Q Consensus 308 ~~L~~L~l~~c~~l~~lp~~~l--~~s--L~~L~i~~c~ 342 (459)
++|+.|++++ ++++.+|...+ ++. ++.|++.++|
T Consensus 163 ~~L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 163 PKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp TTCCEEECCS-SCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CcCCEEECCC-CCCCccCHHHhhhccHhhcceEEecCCC
Confidence 9999999998 47888874322 343 5889998864
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.16 E-value=4.8e-10 Score=101.83 Aligned_cols=146 Identities=16% Similarity=0.241 Sum_probs=99.1
Q ss_pred cEEEeecCCCceeeccccccccccceEEeecccCCccccc-cCCCCCcccEEeeccccCcccCcccCCCCCCccEEeecc
Q 039619 135 ENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAE-GLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQD 213 (459)
Q Consensus 135 ~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 213 (459)
+.++.++ ..++.+|. .+|++|++|+++++ .++.++. .+..+++|++|+++++.--...|..+..+++|++|++++
T Consensus 14 ~~v~c~~-~~l~~iP~--~l~~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRG-KGLTEIPT--NLPETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTT-SCCSSCCS--SCCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCC-CCcCcCCC--ccCcCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 5677766 46788874 34589999999995 6777754 788899999999999843333477889999999999988
Q ss_pred CCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCC-CCCCCccCCCCcceEEe
Q 039619 214 CPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPP-EKDTGKALPASLKHLSI 292 (459)
Q Consensus 214 c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~-~~~~~~~~~~~L~~L~l 292 (459)
+ .++.+|.. .+..+++|++|++++ +.+..++. .+ ..+++|+.|++
T Consensus 90 N-~l~~l~~~--------------------------~f~~l~~L~~L~L~~---N~l~~~~~~~~----~~l~~L~~L~L 135 (220)
T 2v9t_B 90 N-KITELPKS--------------------------LFEGLFSLQLLLLNA---NKINCLRVDAF----QDLHNLNLLSL 135 (220)
T ss_dssp S-CCCCCCTT--------------------------TTTTCTTCCEEECCS---SCCCCCCTTTT----TTCTTCCEEEC
T ss_pred C-cCCccCHh--------------------------HccCCCCCCEEECCC---CCCCEeCHHHc----CCCCCCCEEEC
Confidence 5 56666542 234555566666655 34444432 22 23456666666
Q ss_pred ecCCCCCccC--CCCCCCCCCEEeccCCC
Q 039619 293 WNFPNLERIS--SIENLTSFESLQLCCCP 319 (459)
Q Consensus 293 ~~c~~l~~l~--~l~~l~~L~~L~l~~c~ 319 (459)
++ +.++.++ .+..+++|++|++++++
T Consensus 136 ~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 136 YD-NKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CC-CcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 66 5666665 46667777888777753
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.15 E-value=9.1e-10 Score=98.92 Aligned_cols=127 Identities=25% Similarity=0.327 Sum_probs=63.3
Q ss_pred cccceEEeecccCCccccc-cCCCCCcccEEeeccccCcccCccc-CCCCCCccEEeeccCCCCccccCCCCCCCccEEE
Q 039619 156 KALKHLYIISCSNLESIAE-GLDDNTSLETMEIFICQNLKALPNG-LRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVC 233 (459)
Q Consensus 156 ~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~ 233 (459)
++|++|+++++ .++.++. .+..+++|++|+++++ .++.+|.. +..+++|++|+++++ .++.++..
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~---------- 94 (208)
T 2o6s_A 28 AQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNG---------- 94 (208)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT----------
T ss_pred CCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHh----------
Confidence 56666666664 4444443 2455666666666665 44444432 355666666666554 34444322
Q ss_pred EecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCC
Q 039619 234 IDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFE 311 (459)
Q Consensus 234 l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~ 311 (459)
.+..+++|++|++++ +.+..++... ...+++|++|++++ +.++.++ .+..+++|+
T Consensus 95 ----------------~~~~l~~L~~L~L~~---N~l~~~~~~~---~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~ 151 (208)
T 2o6s_A 95 ----------------VFDKLTQLKELALNT---NQLQSLPDGV---FDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQ 151 (208)
T ss_dssp ----------------TTTTCTTCCEEECCS---SCCCCCCTTT---TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCC
T ss_pred ----------------HhcCccCCCEEEcCC---CcCcccCHhH---hccCCcCCEEECCC-CccceeCHHHhccCCCcc
Confidence 234455555555554 2344443321 01344555555555 3444444 244555555
Q ss_pred EEeccCC
Q 039619 312 SLQLCCC 318 (459)
Q Consensus 312 ~L~l~~c 318 (459)
+|+++++
T Consensus 152 ~L~l~~N 158 (208)
T 2o6s_A 152 YIWLHDN 158 (208)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 5555554
No 112
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.11 E-value=1.5e-12 Score=128.89 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=16.2
Q ss_pred CCCCCEEeccCCCCCCc-----CCCCC--CCCCcceEEeeCCc
Q 039619 307 LTSFESLQLCCCPKLQK-----FPDNG--LPTSLLRLEIYGCP 342 (459)
Q Consensus 307 l~~L~~L~l~~c~~l~~-----lp~~~--l~~sL~~L~i~~c~ 342 (459)
+++|++|++++| .+.. ++... .+++|++|++++|+
T Consensus 273 ~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 273 NIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp SCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 555555555554 2333 33210 13555555555553
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.10 E-value=9.9e-10 Score=99.74 Aligned_cols=141 Identities=12% Similarity=0.211 Sum_probs=67.6
Q ss_pred EEEEecCCCCccccCCccccccCcEEEeecCCCceeecc---ccccccccceEEeecccCCccccc-cCCCCCcccEEee
Q 039619 112 QLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL---RGNLSKALKHLYIISCSNLESIAE-GLDDNTSLETMEI 187 (459)
Q Consensus 112 ~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~---~~~lp~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l 187 (459)
.+++++ ..++.+|. ..+..+++|++++ +.++.++. ...+ ++|++|+++++ .++.++. .+..+++|++|++
T Consensus 15 ~l~~s~-n~l~~iP~--~~~~~~~~L~L~~-N~l~~~~~~~~~~~l-~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 15 TVDCSN-QKLNKIPE--HIPQYTAELRLNN-NEFTVLEATGIFKKL-PQLRKINFSNN-KITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp EEECCS-SCCSSCCS--CCCTTCSEEECCS-SCCCEECCCCCGGGC-TTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred EeEeCC-CCcccCcc--CCCCCCCEEEcCC-CcCCccCchhhhccC-CCCCEEECCCC-cCCEECHHHhCCCCCCCEEEC
Confidence 344443 34555552 2234556666666 34555421 2345 66666666653 3444433 4566666666666
Q ss_pred ccccCcccCcc-cCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeC
Q 039619 188 FICQNLKALPN-GLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFG 264 (459)
Q Consensus 188 ~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~ 264 (459)
+++ .+..++. .+..+++|++|+++++ .+..++.. ..+++|++|++++|.++... +. .+..+++|+.|++++
T Consensus 89 s~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~---~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 89 TSN-RLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVA-PG---AFDTLHSLSTLNLLA 162 (220)
T ss_dssp CSS-CCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBC-TT---TTTTCTTCCEEECCS
T ss_pred CCC-ccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEEC-HH---HhcCCCCCCEEEecC
Confidence 665 3333332 3555666666666553 33333221 22344444444444443322 22 334444444444444
No 114
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.08 E-value=3.4e-12 Score=126.36 Aligned_cols=216 Identities=13% Similarity=0.111 Sum_probs=114.3
Q ss_pred CcCceEEeCCCCC--------CCCCccc-eeEEEEecCC--CCc-cccCCc-------cccccCcEEEeecCCCcee---
Q 039619 90 TLKDPEVLDCPVC--------YEPLTIP-VYQLQIIPCP--SLT-SLWSKS-------ELPATLENIYVDRCSKLAF--- 147 (459)
Q Consensus 90 ~L~~L~l~~c~~l--------~~l~~lp-L~~L~l~~c~--~l~-~lp~~~-------~~~~~L~~L~l~~c~~l~~--- 147 (459)
+|++|++++|.-- ..+..++ |++|++++|. .+. .+|... ..+++|++|+++++ .+..
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~ 111 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTAQ 111 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCTTTH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCCHHHH
Confidence 6777777775210 0022233 7777777652 221 122111 23457777777774 3333
Q ss_pred --ec-cccccccccceEEeecccCCcc-----ccccCCCC---------CcccEEeeccccCc-ccCc---ccCCCCCCc
Q 039619 148 --LS-LRGNLSKALKHLYIISCSNLES-----IAEGLDDN---------TSLETMEIFICQNL-KALP---NGLRNLTSL 206 (459)
Q Consensus 148 --l~-~~~~lp~~L~~L~l~~c~~l~~-----lp~~l~~l---------~~L~~L~l~~c~~l-~~lp---~~l~~l~~L 206 (459)
++ ....+ ++|++|++++|. +.. ++..+..+ ++|++|++++|.-- ..++ ..+..+++|
T Consensus 112 ~~l~~~l~~~-~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 112 EPLIDFLSKH-TPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp HHHHHHHHHC-TTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhC-CCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 22 11345 677777777753 321 22223333 67777777776321 1233 344566777
Q ss_pred cEEeeccCCCCc------ccc-CCCCCCCccEEEEecCccc----ccccccCCCCCCCCCccCEEEEeCCcCCCcee---
Q 039619 207 QYLLIQDCPTIG------SFT-ANCFPTNLASVCIDYEKIY----KPLILERGPGLHRFTSVRLLTLFGGECCGVVS--- 272 (459)
Q Consensus 207 ~~L~l~~c~~l~------~lp-~~~~~~~L~~L~l~~~~l~----~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~--- 272 (459)
++|++++|. +. .++ ....+++|++|+++++.++ ... +. .+..+++|++|++++ |. +..
T Consensus 190 ~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l-~~---~l~~~~~L~~L~L~~--n~-i~~~~~ 261 (386)
T 2ca6_A 190 HTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL-AI---ALKSWPNLRELGLND--CL-LSARGA 261 (386)
T ss_dssp CEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH-HH---HGGGCTTCCEEECTT--CC-CCHHHH
T ss_pred CEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH-HH---HHccCCCcCEEECCC--CC-CchhhH
Confidence 777777653 33 122 1234567777777776664 122 22 456677777777777 32 221
Q ss_pred --cCCCCCCCccCCCCcceEEeecCCCCCc-----cC-CC-CCCCCCCEEeccCCC
Q 039619 273 --FPPEKDTGKALPASLKHLSIWNFPNLER-----IS-SI-ENLTSFESLQLCCCP 319 (459)
Q Consensus 273 --l~~~~~~~~~~~~~L~~L~l~~c~~l~~-----l~-~l-~~l~~L~~L~l~~c~ 319 (459)
++.... ....++|++|++++ +.++. ++ .+ .++++|++|++++|+
T Consensus 262 ~~l~~~l~--~~~~~~L~~L~L~~-n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 262 AAVVDAFS--KLENIGLQTLRLQY-NEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHH--TCSSCCCCEEECCS-SCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHh--hccCCCeEEEECcC-CcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 222110 00256777777777 45655 55 44 446777777777753
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.07 E-value=1.5e-12 Score=135.20 Aligned_cols=106 Identities=11% Similarity=0.060 Sum_probs=62.6
Q ss_pred CccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCC
Q 039619 205 SLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALP 284 (459)
Q Consensus 205 ~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~ 284 (459)
.|+.|+++++ .++.+|..+.+++|+.|++++|.++ .+ |. .+..+++|+.|++++ +.+..+| .+ ..+
T Consensus 442 ~L~~L~Ls~n-~l~~lp~~~~l~~L~~L~Ls~N~l~-~l-p~---~~~~l~~L~~L~Ls~---N~l~~lp-~l----~~l 507 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCHLEQLLLVTHLDLSHNRLR-AL-PP---ALAALRCLEVLQASD---NALENVD-GV----ANL 507 (567)
T ss_dssp TCSEEECTTS-CCSSCCCGGGGTTCCEEECCSSCCC-CC-CG---GGGGCTTCCEEECCS---SCCCCCG-GG----TTC
T ss_pred CceEEEecCC-CCCCCcCccccccCcEeecCccccc-cc-ch---hhhcCCCCCEEECCC---CCCCCCc-cc----CCC
Confidence 3566666554 4555554344556666666665555 22 33 556667777777766 3555565 33 256
Q ss_pred CCcceEEeecCCCCCcc--C-CCCCCCCCCEEeccCCCCCCcCCC
Q 039619 285 ASLKHLSIWNFPNLERI--S-SIENLTSFESLQLCCCPKLQKFPD 326 (459)
Q Consensus 285 ~~L~~L~l~~c~~l~~l--~-~l~~l~~L~~L~l~~c~~l~~lp~ 326 (459)
++|+.|++++ +.++.+ | .+..+++|+.|+++++ .++.+|.
T Consensus 508 ~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~ 550 (567)
T 1dce_A 508 PRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEG 550 (567)
T ss_dssp SSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSS
T ss_pred CCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCcc
Confidence 6777777776 566665 5 6666777777777664 4554443
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.05 E-value=3e-10 Score=98.40 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=25.3
Q ss_pred cccceEEeecccCCc--cccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccC
Q 039619 156 KALKHLYIISCSNLE--SIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDC 214 (459)
Q Consensus 156 ~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 214 (459)
++|++|++++|. +. .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|
T Consensus 24 ~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N 81 (168)
T 2ell_A 24 AAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSEN 81 (168)
T ss_dssp TSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESC
T ss_pred ccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCC
Confidence 444444444432 32 444444444555555555442 3333 33444445555555443
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.05 E-value=1.7e-12 Score=134.78 Aligned_cols=116 Identities=14% Similarity=0.073 Sum_probs=56.3
Q ss_pred ccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCccCEE
Q 039619 182 LETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLL 260 (459)
Q Consensus 182 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L 260 (459)
|+.|+++++ .++.+|. ++.+++|+.|+++++ .++.+|.. +.+++|+.|++++|.++... .+..+++|+.|
T Consensus 443 L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp------~l~~l~~L~~L 513 (567)
T 1dce_A 443 VRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD------GVANLPRLQEL 513 (567)
T ss_dssp CSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG------GGTTCSSCCEE
T ss_pred ceEEEecCC-CCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc------ccCCCCCCcEE
Confidence 445555544 3444443 444555555555443 23344432 33445555555554444322 34556666666
Q ss_pred EEeCCcCCCceec--CCCCCCCccCCCCcceEEeecCCCCCccC-CC----CCCCCCCEEe
Q 039619 261 TLFGGECCGVVSF--PPEKDTGKALPASLKHLSIWNFPNLERIS-SI----ENLTSFESLQ 314 (459)
Q Consensus 261 ~l~~~~c~~l~~l--~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l----~~l~~L~~L~ 314 (459)
++++ +.+..+ |..+ ..+++|+.|++++ |.++.+| .. ..+++|+.|+
T Consensus 514 ~Ls~---N~l~~~~~p~~l----~~l~~L~~L~L~~-N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 514 LLCN---NRLQQSAAIQPL----VSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp ECCS---SCCCSSSTTGGG----GGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred ECCC---CCCCCCCCcHHH----hcCCCCCEEEecC-CcCCCCccHHHHHHHHCcccCccC
Confidence 6665 344444 4433 2455666666666 4555554 22 1256666664
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.04 E-value=4.9e-10 Score=97.04 Aligned_cols=127 Identities=13% Similarity=0.142 Sum_probs=79.5
Q ss_pred CCCcccEEeeccccCcc--cCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCC
Q 039619 178 DNTSLETMEIFICQNLK--ALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFT 255 (459)
Q Consensus 178 ~l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~ 255 (459)
..++|++|++++|. +. .+|..+..+++|+.|++++|. ++.++....+++|++|+++++.+.... +. .+..++
T Consensus 22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~---~~~~l~ 95 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENRIFGGL-DM---LAEKLP 95 (168)
T ss_dssp CTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCCCCSCC-CH---HHHHCT
T ss_pred CcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCcCchHH-HH---HHhhCC
Confidence 35789999999984 55 788777888999999998865 555533344667777777776665422 22 334466
Q ss_pred ccCEEEEeCCcCCCceecC--CCCCCCccCCCCcceEEeecCCCCCccC-----CCCCCCCCCEEeccCC
Q 039619 256 SVRLLTLFGGECCGVVSFP--PEKDTGKALPASLKHLSIWNFPNLERIS-----SIENLTSFESLQLCCC 318 (459)
Q Consensus 256 ~L~~L~l~~~~c~~l~~l~--~~~~~~~~~~~~L~~L~l~~c~~l~~l~-----~l~~l~~L~~L~l~~c 318 (459)
+|+.|++++ +.+..++ ..+ ..+++|+.|++++ +.+..++ .+..+++|++|++++|
T Consensus 96 ~L~~L~Ls~---N~l~~~~~~~~l----~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 96 NLTHLNLSG---NKLKDISTLEPL----KKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp TCCEEECBS---SSCCSSGGGGGG----SSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCEEeccC---CccCcchhHHHH----hcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 777777766 2444443 222 1455666666666 4455444 2445666666666664
No 119
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.01 E-value=5.2e-12 Score=123.95 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=14.8
Q ss_pred CcceEEeecCCCCCccC------CCCCCCCCCEEeccCC
Q 039619 286 SLKHLSIWNFPNLERIS------SIENLTSFESLQLCCC 318 (459)
Q Consensus 286 ~L~~L~l~~c~~l~~l~------~l~~l~~L~~L~l~~c 318 (459)
+|++|++++ +.++..+ .+..+++|++|++++|
T Consensus 226 ~L~~L~Ls~-N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 226 HVVSLNLCL-NCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp TCCEEECCS-SCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred CceEEECcC-CCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 455555555 3444332 2344455555555543
No 120
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.99 E-value=1.5e-11 Score=120.58 Aligned_cols=56 Identities=18% Similarity=0.053 Sum_probs=27.1
Q ss_pred CCcceEEeecCCCCCc-----cC-CCCC-CCCCCEEeccCCCCCCcCCCC------CCCCCcceEEeeCCc
Q 039619 285 ASLKHLSIWNFPNLER-----IS-SIEN-LTSFESLQLCCCPKLQKFPDN------GLPTSLLRLEIYGCP 342 (459)
Q Consensus 285 ~~L~~L~l~~c~~l~~-----l~-~l~~-l~~L~~L~l~~c~~l~~lp~~------~l~~sL~~L~i~~c~ 342 (459)
++|++|++++ +.++. ++ .+.. .++|++|++++| .++..+.. .-.++|++|++++|.
T Consensus 196 ~~L~~L~Ls~-N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 196 ASVTSLDLSA-NLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp TTCCEEECTT-SCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCCCEEECCC-CCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 3566666665 44544 22 2222 236666666664 34433210 113556666666654
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.93 E-value=5.5e-10 Score=94.68 Aligned_cols=102 Identities=20% Similarity=0.248 Sum_probs=55.8
Q ss_pred cccceEEeecccCCc--cccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCcc-ccCC-CCCCCccE
Q 039619 156 KALKHLYIISCSNLE--SIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGS-FTAN-CFPTNLAS 231 (459)
Q Consensus 156 ~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~-lp~~-~~~~~L~~ 231 (459)
++|++|++++|. +. .+|..+..+++|++|++++| .+..+ ..+..+++|++|++++|. +.. +|.. ..+++|++
T Consensus 17 ~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCE
Confidence 566666666653 33 56666666677777777666 44444 455666677777776643 333 3322 12455555
Q ss_pred EEEecCcccccccccCCCCCCCCCccCEEEEeC
Q 039619 232 VCIDYEKIYKPLILERGPGLHRFTSVRLLTLFG 264 (459)
Q Consensus 232 L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~ 264 (459)
|+++++.++....+. .+..+++|++|++++
T Consensus 93 L~ls~N~i~~~~~~~---~~~~l~~L~~L~l~~ 122 (149)
T 2je0_A 93 LNLSGNKIKDLSTIE---PLKKLENLKSLDLFN 122 (149)
T ss_dssp EECTTSCCCSHHHHG---GGGGCTTCCEEECTT
T ss_pred EECCCCcCCChHHHH---HHhhCCCCCEEeCcC
Confidence 555554444310012 345556666666655
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.93 E-value=5.8e-10 Score=94.52 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=47.8
Q ss_pred CCcccEEeeccccCcc--cCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCc
Q 039619 179 NTSLETMEIFICQNLK--ALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTS 256 (459)
Q Consensus 179 l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~ 256 (459)
.++|+.|++++|. +. .+|..+..+++|+.|++++| .++.++....+++|++|+++++.+.... +. .+..+++
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~---~~~~l~~ 89 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDNRVSGGL-EV---LAEKCPN 89 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSSCCCSCT-HH---HHHHCTT
T ss_pred CccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCCcccchH-HH---HhhhCCC
Confidence 4788899999884 54 77777788888999998876 4555432233455555555554444322 21 2233445
Q ss_pred cCEEEEeC
Q 039619 257 VRLLTLFG 264 (459)
Q Consensus 257 L~~L~l~~ 264 (459)
|++|++++
T Consensus 90 L~~L~ls~ 97 (149)
T 2je0_A 90 LTHLNLSG 97 (149)
T ss_dssp CCEEECTT
T ss_pred CCEEECCC
Confidence 55555544
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.92 E-value=5.3e-09 Score=100.98 Aligned_cols=33 Identities=12% Similarity=0.265 Sum_probs=21.2
Q ss_pred cccceEEeecccCCccccc-cCCCCCcccEEeeccc
Q 039619 156 KALKHLYIISCSNLESIAE-GLDDNTSLETMEIFIC 190 (459)
Q Consensus 156 ~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c 190 (459)
++|++|++.+ .++.+++ .+..+++|+.+++.++
T Consensus 101 ~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n 134 (329)
T 3sb4_A 101 QTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKK 134 (329)
T ss_dssp TTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCS
T ss_pred CCCcEEECCc--cccchhHHHhhcCcccceEEcCCC
Confidence 6777777765 5666643 4666777777777665
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.89 E-value=1.2e-08 Score=90.53 Aligned_cols=121 Identities=15% Similarity=0.250 Sum_probs=57.6
Q ss_pred eEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEecCcc
Q 039619 160 HLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDYEKI 239 (459)
Q Consensus 160 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l 239 (459)
.+++++ ..++.+|..+ .++|++|+++++ .++.+|..+..+++|+.|+++++ .++.++.
T Consensus 14 ~l~~~~-~~l~~ip~~~--~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~----------------- 71 (193)
T 2wfh_A 14 VVRCSN-KGLKVLPKGI--PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNN-RISTLSN----------------- 71 (193)
T ss_dssp EEECTT-SCCSSCCSCC--CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSS-CCCCCCT-----------------
T ss_pred EEEcCC-CCCCcCCCCC--CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCC-cCCEeCH-----------------
Confidence 344433 2344455433 245555555554 44455555555555555555543 2333321
Q ss_pred cccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccC
Q 039619 240 YKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCC 317 (459)
Q Consensus 240 ~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~ 317 (459)
. .+.++++|++|++++ +.+..++... ...+++|+.|++++ +.++.++ .+..+++|+.|++++
T Consensus 72 ------~---~f~~l~~L~~L~Ls~---N~l~~i~~~~---f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 72 ------Q---SFSNMTQLLTLILSY---NRLRCIPPRT---FDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp ------T---TTTTCTTCCEEECCS---SCCCBCCTTT---TTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCS
T ss_pred ------h---HccCCCCCCEEECCC---CccCEeCHHH---hCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCC
Confidence 1 345555555555555 3344443321 01334555555555 4455554 345556666666655
Q ss_pred C
Q 039619 318 C 318 (459)
Q Consensus 318 c 318 (459)
+
T Consensus 136 N 136 (193)
T 2wfh_A 136 N 136 (193)
T ss_dssp S
T ss_pred C
Confidence 3
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.87 E-value=1.3e-08 Score=90.41 Aligned_cols=120 Identities=12% Similarity=0.174 Sum_probs=68.9
Q ss_pred cEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCc-ccCCCCCCccEEeecc
Q 039619 135 ENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALP-NGLRNLTSLQYLLIQD 213 (459)
Q Consensus 135 ~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~ 213 (459)
+.+++++ +.++.+|. .+|++|++|+++++ .++.+|..+..+++|++|+++++ .++.++ ..+..+++|++|++++
T Consensus 13 ~~l~~~~-~~l~~ip~--~~~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSN-KGLKVLPK--GIPRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTT-SCCSSCCS--CCCTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCC-CCCCcCCC--CCCCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCC
Confidence 4555555 35666652 23367777777763 56677777777788888888776 455444 3467777788887776
Q ss_pred CCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeC
Q 039619 214 CPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFG 264 (459)
Q Consensus 214 c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~ 264 (459)
+ .++.++.. ..+++|++|++++|.++... +. .+..+++|+.|++++
T Consensus 88 N-~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~-~~---~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 88 N-RLRCIPPRTFDGLKSLRLLSLHGNDISVVP-EG---AFNDLSALSHLAIGA 135 (193)
T ss_dssp S-CCCBCCTTTTTTCTTCCEEECCSSCCCBCC-TT---TTTTCTTCCEEECCS
T ss_pred C-ccCEeCHHHhCCCCCCCEEECCCCCCCeeC-hh---hhhcCccccEEEeCC
Confidence 4 45555432 22344455554444443222 11 344555555555555
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.85 E-value=3e-10 Score=121.47 Aligned_cols=144 Identities=12% Similarity=0.108 Sum_probs=78.9
Q ss_pred CcCceEEeCCCCCCCCCccc---eeEEEEecC---------CCCccccCCccccccCcEEEeecCCCceeecc-cccccc
Q 039619 90 TLKDPEVLDCPVCYEPLTIP---VYQLQIIPC---------PSLTSLWSKSELPATLENIYVDRCSKLAFLSL-RGNLSK 156 (459)
Q Consensus 90 ~L~~L~l~~c~~l~~l~~lp---L~~L~l~~c---------~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~-~~~lp~ 156 (459)
+++.|++.+ +.+...| |+.++|+.. +.+...+.....+.+|+.|+|+++ .+..+|. ...+ +
T Consensus 174 ~~~~l~L~~----n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l-~ 247 (727)
T 4b8c_D 174 LTPKIELFA----NGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNL-QIFNISANIFKY-D 247 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTS-CCSCCCGGGGGC-C
T ss_pred ccceEEeeC----CCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCC-CCCCCChhhcCC-C
Confidence 466666665 3344444 444444331 222223333344567888888875 4556662 2466 7
Q ss_pred ccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEe
Q 039619 157 ALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCID 235 (459)
Q Consensus 157 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~ 235 (459)
+|++|+|+++ .+..+|..+..+++|++|+|+++ .+..+|..+..+++|++|+|++| .++.+|.. +.+++|+.|+|+
T Consensus 248 ~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 248 FLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp SCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECT
T ss_pred CCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCC
Confidence 8888888875 56678887888888888888887 46677888888888888888775 56677754 446777777777
Q ss_pred cCccccc
Q 039619 236 YEKIYKP 242 (459)
Q Consensus 236 ~~~l~~~ 242 (459)
+|.+...
T Consensus 325 ~N~l~~~ 331 (727)
T 4b8c_D 325 GNPLEKQ 331 (727)
T ss_dssp TSCCCSH
T ss_pred CCccCCC
Confidence 7766643
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.82 E-value=3.5e-09 Score=92.42 Aligned_cols=79 Identities=25% Similarity=0.258 Sum_probs=39.6
Q ss_pred ccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccC-CCCCcccEEeeccccCcccCcc--cCCCCCCccE
Q 039619 132 ATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGL-DDNTSLETMEIFICQNLKALPN--GLRNLTSLQY 208 (459)
Q Consensus 132 ~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~ 208 (459)
++|++|+++++ .++.++....+ ++|++|+++++ .+..+|..+ ..+++|++|+++++ .+..+|. .+..+++|+.
T Consensus 42 ~~L~~L~Ls~N-~l~~~~~l~~l-~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~ 117 (176)
T 1a9n_A 42 DQFDAIDFSDN-EIRKLDGFPLL-RRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTY 117 (176)
T ss_dssp TCCSEEECCSS-CCCEECCCCCC-SSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCE
T ss_pred CCCCEEECCCC-CCCcccccccC-CCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCE
Confidence 35566665553 44444433444 55555555553 344444333 45555555555554 3444443 4445555555
Q ss_pred EeeccC
Q 039619 209 LLIQDC 214 (459)
Q Consensus 209 L~l~~c 214 (459)
|+++++
T Consensus 118 L~l~~N 123 (176)
T 1a9n_A 118 LCILRN 123 (176)
T ss_dssp EECCSS
T ss_pred EEecCC
Confidence 555543
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.82 E-value=1.8e-09 Score=94.25 Aligned_cols=88 Identities=14% Similarity=0.106 Sum_probs=52.1
Q ss_pred CCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC---CCCCCCCCCEEeccCCCCCCcCCC
Q 039619 250 GLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS---SIENLTSFESLQLCCCPKLQKFPD 326 (459)
Q Consensus 250 ~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---~l~~l~~L~~L~l~~c~~l~~lp~ 326 (459)
.+..+++|++|++++ +.+..+|... ...+++|++|++++ +.++.++ .+..+++|+.|++++| .+..+|.
T Consensus 59 ~l~~l~~L~~L~Ls~---N~l~~~~~~~---~~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~ 130 (176)
T 1a9n_A 59 GFPLLRRLKTLLVNN---NRICRIGEGL---DQALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRN-PVTNKKH 130 (176)
T ss_dssp CCCCCSSCCEEECCS---SCCCEECSCH---HHHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTT
T ss_pred ccccCCCCCEEECCC---CcccccCcch---hhcCCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHh
Confidence 345566666666665 3455555322 01345666666666 5566555 3566777888888775 4555654
Q ss_pred C-----CCCCCcceEEeeCCchhH
Q 039619 327 N-----GLPTSLLRLEIYGCPLIE 345 (459)
Q Consensus 327 ~-----~l~~sL~~L~i~~c~~L~ 345 (459)
. ..+++|+.|++.+++.-+
T Consensus 131 ~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 131 YRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HHHHHHHHCTTCSEETTEECCHHH
T ss_pred HHHHHHHHCCccceeCCCcCCHHH
Confidence 2 126788888888776433
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.82 E-value=4.4e-08 Score=85.37 Aligned_cols=85 Identities=22% Similarity=0.284 Sum_probs=48.0
Q ss_pred CCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCC
Q 039619 250 GLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDN 327 (459)
Q Consensus 250 ~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~ 327 (459)
.+..+++|++|++++ +.+..++... ...+++|++|++++ +.++.++ .+..+++|++|+++++ .++.+|..
T Consensus 47 ~~~~l~~L~~L~l~~---n~l~~~~~~~---~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~ 118 (177)
T 2o6r_A 47 VFDKLTQLTKLSLSQ---NQIQSLPDGV---FDKLTKLTILYLHE-NKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDG 118 (177)
T ss_dssp TTTTCTTCSEEECCS---SCCCCCCTTT---TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred HhcCcccccEEECCC---CcceEeChhH---ccCCCccCEEECCC-CCccccCHHHhhCCcccCEEECcCC-cceEeCHH
Confidence 345566666666665 3444554431 01455666666666 5566655 3456666777777664 55566553
Q ss_pred CC--CCCcceEEeeCCc
Q 039619 328 GL--PTSLLRLEIYGCP 342 (459)
Q Consensus 328 ~l--~~sL~~L~i~~c~ 342 (459)
.+ +++|++|++++++
T Consensus 119 ~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 119 IFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTTCTTCCEEECCSSC
T ss_pred HhcCCcccCEEEecCCC
Confidence 22 4666677666654
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.80 E-value=3.5e-08 Score=87.43 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=22.4
Q ss_pred cccceEEeecccCCcccccc--CCCCCcccEEeeccccCcccC-cccCCCCCCccEEeecc
Q 039619 156 KALKHLYIISCSNLESIAEG--LDDNTSLETMEIFICQNLKAL-PNGLRNLTSLQYLLIQD 213 (459)
Q Consensus 156 ~~L~~L~l~~c~~l~~lp~~--l~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~ 213 (459)
.+|++|+++++ .+..++.. +..+++|++|+++++ .++.+ |..+..+++|++|++++
T Consensus 29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCC
Confidence 34444444442 33333321 344444444444443 22222 33344444444444443
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.78 E-value=4e-08 Score=87.03 Aligned_cols=102 Identities=16% Similarity=0.231 Sum_probs=71.5
Q ss_pred eEEEEecCCCCccccCCccccccCcEEEeecCCCceeecc---ccccccccceEEeecccCCccc-cccCCCCCcccEEe
Q 039619 111 YQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL---RGNLSKALKHLYIISCSNLESI-AEGLDDNTSLETME 186 (459)
Q Consensus 111 ~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~---~~~lp~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~ 186 (459)
+.+++++ ..++.+|.. .+.+|++|+++++ .++.++. .+.+ ++|++|+++++ .++.+ |..+..+++|++|+
T Consensus 11 ~~l~~s~-~~l~~ip~~--~~~~l~~L~l~~n-~i~~~~~~~~~~~l-~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPRD--IPLHTTELLLNDN-ELGRISSDGLFGRL-PHLVKLELKRN-QLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTT-SCCSSCCSC--CCTTCSEEECCSC-CCCSBCCSCSGGGC-TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEE
T ss_pred CEEEcCC-CCcCcCccC--CCCCCCEEECCCC-cCCccCCccccccC-CCCCEEECCCC-CCCCcCHhHcCCcccCCEEE
Confidence 4556655 566777732 3348888888884 6666653 3567 88999999885 55555 67788899999999
Q ss_pred eccccCcccCc-ccCCCCCCccEEeeccCCCCccc
Q 039619 187 IFICQNLKALP-NGLRNLTSLQYLLIQDCPTIGSF 220 (459)
Q Consensus 187 l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l 220 (459)
++++ .+..++ ..+..+++|++|+++++ .+..+
T Consensus 85 Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~ 117 (192)
T 1w8a_A 85 LGEN-KIKEISNKMFLGLHQLKTLNLYDN-QISCV 117 (192)
T ss_dssp CCSC-CCCEECSSSSTTCTTCCEEECCSS-CCCEE
T ss_pred CCCC-cCCccCHHHhcCCCCCCEEECCCC-cCCee
Confidence 9987 455444 44778888888888775 34444
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.77 E-value=4.1e-09 Score=112.69 Aligned_cols=153 Identities=14% Similarity=0.092 Sum_probs=88.8
Q ss_pred CccccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccC
Q 039619 169 LESIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILER 247 (459)
Q Consensus 169 l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~ 247 (459)
+...+..+..+++|+.|+++++ .+..+|..+..+++|++|+|+++ .+..+|.. +.+++|++|+|++|.++ .+ |.
T Consensus 213 ~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~-~l-p~- 287 (727)
T 4b8c_D 213 MVMPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLT-SL-PA- 287 (727)
T ss_dssp ---------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCS-SC-CS-
T ss_pred eecChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCC-cc-Ch-
Confidence 3344667788899999999887 56678887888899999999875 56677753 45678888888887776 33 44
Q ss_pred CCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCC-CCCEEeccCCCCCCcC
Q 039619 248 GPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLT-SFESLQLCCCPKLQKF 324 (459)
Q Consensus 248 ~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~-~L~~L~l~~c~~l~~l 324 (459)
.+..+++|++|++++ +.+..+|..++ .+++|+.|+|++ |.+...+ .+..+. .+..+++.++..-.
T Consensus 288 --~~~~l~~L~~L~L~~---N~l~~lp~~~~----~l~~L~~L~L~~-N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~-- 355 (727)
T 4b8c_D 288 --ELGSCFQLKYFYFFD---NMVTTLPWEFG----NLCNLQFLGVEG-NPLEKQFLKILTEKSVTGLIFYLRDNRPEI-- 355 (727)
T ss_dssp --SGGGGTTCSEEECCS---SCCCCCCSSTT----SCTTCCCEECTT-SCCCSHHHHHHHHHHHHHHHHHHHHCCCCC--
T ss_pred --hhcCCCCCCEEECCC---CCCCccChhhh----cCCCccEEeCCC-CccCCCChHHHhhcchhhhHHhhccCcccC--
Confidence 567778888888877 36667777653 667788888877 5555433 222111 11224555532211
Q ss_pred CCCCCCCCcceEEeeCC
Q 039619 325 PDNGLPTSLLRLEIYGC 341 (459)
Q Consensus 325 p~~~l~~sL~~L~i~~c 341 (459)
.+|..|+.|++..+
T Consensus 356 ---~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 356 ---PLPHERRFIEINTD 369 (727)
T ss_dssp ---CCCCC---------
T ss_pred ---cCccccceeEeecc
Confidence 13556777776655
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.74 E-value=9.9e-08 Score=83.12 Aligned_cols=124 Identities=23% Similarity=0.304 Sum_probs=76.7
Q ss_pred cceEEeecccCCccccccCCCCCcccEEeeccccCcccCcc-cCCCCCCccEEeeccCCCCccccCCCCCCCccEEEEec
Q 039619 158 LKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPN-GLRNLTSLQYLLIQDCPTIGSFTANCFPTNLASVCIDY 236 (459)
Q Consensus 158 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~ 236 (459)
.+.+++++ ..++.+|..+ .++|++|+++++ .+..+|. .+..+++|++|+++++ .++.++.
T Consensus 9 ~~~l~~~~-~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-------------- 69 (177)
T 2o6r_A 9 GTEIRCNS-KGLTSVPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPD-------------- 69 (177)
T ss_dssp TTEEECCS-SCCSSCCTTC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCT--------------
T ss_pred CCEEEecC-CCCccCCCCC--CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeCh--------------
Confidence 34555555 3455665443 356777777665 3444443 3456666666666654 3444432
Q ss_pred CcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEe
Q 039619 237 EKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQ 314 (459)
Q Consensus 237 ~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~ 314 (459)
. .+..+++|+.|++++ +.+..++... ...+++|++|++++ +.++.++ .+..+++|++|+
T Consensus 70 ---------~---~~~~l~~L~~L~l~~---N~l~~~~~~~---~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 70 ---------G---VFDKLTKLTILYLHE---NKLQSLPNGV---FDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp ---------T---TTTTCTTCCEEECCS---SCCCCCCTTT---TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEE
T ss_pred ---------h---HccCCCccCEEECCC---CCccccCHHH---hhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEE
Confidence 1 356777788888877 4566666532 02467788888887 6777777 357788999999
Q ss_pred ccCCC
Q 039619 315 LCCCP 319 (459)
Q Consensus 315 l~~c~ 319 (459)
+++++
T Consensus 131 l~~N~ 135 (177)
T 2o6r_A 131 LHTNP 135 (177)
T ss_dssp CCSSC
T ss_pred ecCCC
Confidence 98864
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.67 E-value=1.7e-06 Score=85.61 Aligned_cols=206 Identities=11% Similarity=0.145 Sum_probs=125.3
Q ss_pred eeEEEEecCCCCccccCCccccccCcEEEeecCCCceeec--cccccccccceEEeecccCCccccccCCCCCcccEEee
Q 039619 110 VYQLQIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLS--LRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEI 187 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~--~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 187 (459)
|+.+.+.. .++.++...-.-.+|+.+.+.+ .++.++ ....+ ++|+.+++.+ ..++.++.......+|+.+.+
T Consensus 137 L~~i~l~~--~i~~I~~~aF~~~~L~~i~lp~--~l~~I~~~aF~~c-~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 137 IAKVVLNE--GLKSIGDMAFFNSTVQEIVFPS--TLEQLKEDIFYYC-YNLKKADLSK-TKITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CSEEECCT--TCCEECTTTTTTCCCCEEECCT--TCCEECSSTTTTC-TTCCEEECTT-SCCSEECTTTTTTCCCSEEEC
T ss_pred ccEEEeCC--CccEECHHhcCCCCceEEEeCC--CccEehHHHhhCc-ccCCeeecCC-CcceEechhhEeecccCEEEe
Confidence 66666643 3666653322124677777764 566665 22445 6788888865 366777666555677888877
Q ss_pred ccccCcccCcc-cCCCCCCccEEeeccCCCCccccCCCC-CCCccEEEEec--CcccccccccCCCCCCCCCccCEEEEe
Q 039619 188 FICQNLKALPN-GLRNLTSLQYLLIQDCPTIGSFTANCF-PTNLASVCIDY--EKIYKPLILERGPGLHRFTSVRLLTLF 263 (459)
Q Consensus 188 ~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~~~-~~~L~~L~l~~--~~l~~~~~~~~~~~l~~l~~L~~L~l~ 263 (459)
.. .++.++. .+..+++|+.+.+.+ .++.++...+ -.+|+.+.+.+ ..+. . ..+.++++|+.+.+.
T Consensus 211 p~--~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp~~i~~I~----~---~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 211 PV--TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLPNGVTNIA----S---RAFYYCPELAEVTTY 279 (401)
T ss_dssp CT--TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEETTCCEEC----T---TTTTTCTTCCEEEEE
T ss_pred CC--chheehhhHhhCCCCCCEEecCC--CccCccccccccCCccEEEeCCCccEEC----h---hHhhCCCCCCEEEeC
Confidence 63 3555543 456777888888764 3566655433 36778887754 2232 2 266778888888887
Q ss_pred CCcCC---CceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceE
Q 039619 264 GGECC---GVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRL 336 (459)
Q Consensus 264 ~~~c~---~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L 336 (459)
++ .. ....++... ...+++|+.+.+. ++++.++ .+.++++|+.+.+.. +++.++...+ + +|+.+
T Consensus 280 ~~-~~~~~~~~~I~~~a---F~~c~~L~~l~l~--~~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l 350 (401)
T 4fdw_A 280 GS-TFNDDPEAMIHPYC---LEGCPKLARFEIP--ESIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEV 350 (401)
T ss_dssp SS-CCCCCTTCEECTTT---TTTCTTCCEECCC--TTCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEE
T ss_pred Cc-cccCCcccEECHHH---hhCCccCCeEEeC--CceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEE
Confidence 62 00 112344432 1345678888777 3577777 677778888888854 4666665444 4 77777
Q ss_pred EeeCC
Q 039619 337 EIYGC 341 (459)
Q Consensus 337 ~i~~c 341 (459)
++.+.
T Consensus 351 ~l~~n 355 (401)
T 4fdw_A 351 KVEGT 355 (401)
T ss_dssp EECCS
T ss_pred EEcCC
Confidence 77664
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.61 E-value=2.7e-06 Score=84.15 Aligned_cols=205 Identities=12% Similarity=0.144 Sum_probs=147.6
Q ss_pred eeEEEEecCCCCccccCCc-cccccCcEEEeecCCCceeeccc-cccccccceEEeecccCCcccc-ccCCCCCcccEEe
Q 039619 110 VYQLQIIPCPSLTSLWSKS-ELPATLENIYVDRCSKLAFLSLR-GNLSKALKHLYIISCSNLESIA-EGLDDNTSLETME 186 (459)
Q Consensus 110 L~~L~l~~c~~l~~lp~~~-~~~~~L~~L~l~~c~~l~~l~~~-~~lp~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~ 186 (459)
|+.+.+.+ .++.++... ..+.+|+.+++.+ +.++.++.. -.. .+|+.+.+.. +++.++ ..+..+++|+.+.
T Consensus 159 L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~-~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 159 VQEIVFPS--TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVY-AGIEEVLLPV--TLKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCEEECCT--TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTT-CCCSEEECCT--TCCEECTTTTTTCTTCCCEE
T ss_pred ceEEEeCC--CccEehHHHhhCcccCCeeecCC-CcceEechhhEee-cccCEEEeCC--chheehhhHhhCCCCCCEEe
Confidence 88888864 677776332 4457899999976 478888732 123 7899999974 577774 4577889999999
Q ss_pred eccccCcccCccc-CCCCCCccEEeeccCCCCccccCCCC--CCCccEEEEecCccc-----ccccccCCCCCCCCCccC
Q 039619 187 IFICQNLKALPNG-LRNLTSLQYLLIQDCPTIGSFTANCF--PTNLASVCIDYEKIY-----KPLILERGPGLHRFTSVR 258 (459)
Q Consensus 187 l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~l~~~~l~-----~~~~~~~~~~l~~l~~L~ 258 (459)
+.. +++.++.. +.. .+|+.+.+.+ .++.++...+ +++|+.+.+.++.+. ... . ..+.++++|+
T Consensus 233 l~~--~l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~-~---~aF~~c~~L~ 303 (401)
T 4fdw_A 233 IPE--NVSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH-P---YCLEGCPKLA 303 (401)
T ss_dssp CCT--TCCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEEC-T---TTTTTCTTCC
T ss_pred cCC--CccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEEC-H---HHhhCCccCC
Confidence 976 45666543 344 7899999953 5777776644 789999999884432 111 2 2788999999
Q ss_pred EEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCC---CCCCc
Q 039619 259 LLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNG---LPTSL 333 (459)
Q Consensus 259 ~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~---l~~sL 333 (459)
.+.+.+ .+..++... ...+.+|+.+.+.+ +++.+. .+.++ +|+.+++.++ .+..++... ++.++
T Consensus 304 ~l~l~~----~i~~I~~~a---F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l 372 (401)
T 4fdw_A 304 RFEIPE----SIRILGQGL---LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDI 372 (401)
T ss_dssp EECCCT----TCCEECTTT---TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTC
T ss_pred eEEeCC----ceEEEhhhh---hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCc
Confidence 999986 577777654 13468999999964 688887 78888 9999999884 556666533 35678
Q ss_pred ceEEeeC
Q 039619 334 LRLEIYG 340 (459)
Q Consensus 334 ~~L~i~~ 340 (459)
+.|.+..
T Consensus 373 ~~l~vp~ 379 (401)
T 4fdw_A 373 TVIRVPA 379 (401)
T ss_dssp CEEEECG
T ss_pred cEEEeCH
Confidence 8888865
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.61 E-value=5.3e-07 Score=86.80 Aligned_cols=189 Identities=12% Similarity=0.029 Sum_probs=114.4
Q ss_pred cccCcEEEeecCCCceeecc--ccccccccceEEeecccCCcccc-ccCCCCCcccEEeecccc---CcccCc-ccCCCC
Q 039619 131 PATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESIA-EGLDDNTSLETMEIFICQ---NLKALP-NGLRNL 203 (459)
Q Consensus 131 ~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~---~l~~lp-~~l~~l 203 (459)
+++|++|++.+ .++.++. ...+ ++|+.|++.+. .+..++ ..+..+.++..+...... ....+. ..+..+
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~-~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGC-DNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTC-TTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cCCCcEEECCc--cccchhHHHhhcC-cccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 46888888876 6777762 3556 78888888873 444553 345555555555443210 000110 011122
Q ss_pred CC--------------------------ccEEeeccCCCCccccCC-CCCCCccEEEEecCcccccccccCCCCCCCCCc
Q 039619 204 TS--------------------------LQYLLIQDCPTIGSFTAN-CFPTNLASVCIDYEKIYKPLILERGPGLHRFTS 256 (459)
Q Consensus 204 ~~--------------------------L~~L~l~~c~~l~~lp~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~ 256 (459)
.+ ++.+.+.+.-.-..+... ..+++|+++++.+++++... .. .+.++++
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~-~~---aF~~~~~ 251 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIP-DF---TFAQKKY 251 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEEC-TT---TTTTCTT
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceec-Hh---hhhCCCC
Confidence 22 333333221000000000 12678999999886666433 33 7889999
Q ss_pred cCEEEEeCCcCCCceecCCCCCCCccCCCCcc-eEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC--CC
Q 039619 257 VRLLTLFGGECCGVVSFPPEKDTGKALPASLK-HLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL--PT 331 (459)
Q Consensus 257 L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~-~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~ 331 (459)
|++|++.+ ++..++... +..+.+|+ .+.+.+ +++.++ .+.++++|+.+++.+ ++++.++...+ ++
T Consensus 252 L~~l~l~~----ni~~I~~~a---F~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~ 321 (329)
T 3sb4_A 252 LLKIKLPH----NLKTIGQRV---FSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGNGV 321 (329)
T ss_dssp CCEEECCT----TCCEECTTT---TTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEECTTTTCTTC
T ss_pred CCEEECCc----ccceehHHH---hhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccchhhhcCCc
Confidence 99999987 377777653 23567898 999986 788887 788899999999876 57888887555 56
Q ss_pred CcceEE
Q 039619 332 SLLRLE 337 (459)
Q Consensus 332 sL~~L~ 337 (459)
+|+.++
T Consensus 322 ~L~~ly 327 (329)
T 3sb4_A 322 PSKLIY 327 (329)
T ss_dssp CCCEEE
T ss_pred chhhhc
Confidence 677665
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.54 E-value=1.2e-09 Score=97.31 Aligned_cols=113 Identities=12% Similarity=0.146 Sum_probs=56.7
Q ss_pred CccccCCccccccCcEEEeecCCCceeeccccccccccceEEeecccCCccccccCCCCCcccEEeeccccCcccCcccC
Q 039619 121 LTSLWSKSELPATLENIYVDRCSKLAFLSLRGNLSKALKHLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALPNGL 200 (459)
Q Consensus 121 l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~~~~lp~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l 200 (459)
++.+|.....+++|++|+++++ .++.+|....+ ++|++|+++++ .+..+|..+..+++|++|++++| .+..+| .+
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n-~l~~l~~~~~l-~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~ 111 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTN-NIEKISSLSGM-ENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS-GI 111 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEE-EESCCCCHHHH-TTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HH
T ss_pred HhhhhHHHhcCCCCCEEECCCC-CCccccccccC-CCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCC-cc
Confidence 4444433333446666666653 44555533445 56666666664 34455554555566666666665 444444 34
Q ss_pred CCCCCccEEeeccCCCCccccC---CCCCCCccEEEEecCcc
Q 039619 201 RNLTSLQYLLIQDCPTIGSFTA---NCFPTNLASVCIDYEKI 239 (459)
Q Consensus 201 ~~l~~L~~L~l~~c~~l~~lp~---~~~~~~L~~L~l~~~~l 239 (459)
..+++|+.|+++++ .+..++. ...+++|++|++++|.+
T Consensus 112 ~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 112 EKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred ccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 45556666666553 2333322 12344444444444433
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.52 E-value=3.1e-10 Score=101.23 Aligned_cols=42 Identities=12% Similarity=0.231 Sum_probs=19.9
Q ss_pred cccccCCCCCcccEEeeccccCcccCcccCCCCCCccEEeeccC
Q 039619 171 SIAEGLDDNTSLETMEIFICQNLKALPNGLRNLTSLQYLLIQDC 214 (459)
Q Consensus 171 ~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 214 (459)
.+|..+..+++|++|+++++ .+..+| .+..+++|+.|++++|
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n 80 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN 80 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE
T ss_pred hhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC
Confidence 33334444555555555544 333344 4444555555555443
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.52 E-value=5e-07 Score=78.56 Aligned_cols=99 Identities=17% Similarity=0.217 Sum_probs=63.0
Q ss_pred cEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCC
Q 039619 207 QYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPAS 286 (459)
Q Consensus 207 ~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~ 286 (459)
+.+++++ ..++.+|. .++++|++|+++++.++... +. .+.++++|++|++++ +.+..+|... ...+++
T Consensus 15 ~~l~~~~-n~l~~iP~-~~~~~L~~L~Ls~N~l~~~~-~~---~~~~l~~L~~L~Ls~---N~l~~i~~~~---~~~l~~ 82 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPA-GIPTDKQRLWLNNNQITKLE-PG---VFDHLVNLQQLYFNS---NKLTAIPTGV---FDKLTQ 82 (174)
T ss_dssp SEEECCS-SCCSSCCS-CCCTTCSEEECCSSCCCCCC-TT---TTTTCTTCCEEECCS---SCCCCCCTTT---TTTCTT
T ss_pred cEEEeCC-CCCCccCC-CcCCCCcEEEeCCCCccccC-HH---HhcCCcCCCEEECCC---CCCCccChhH---hCCcch
Confidence 3444444 23445543 23456666666665555433 33 567888888888887 4677777643 024677
Q ss_pred cceEEeecCCCCCccC--CCCCCCCCCEEeccCC
Q 039619 287 LKHLSIWNFPNLERIS--SIENLTSFESLQLCCC 318 (459)
Q Consensus 287 L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c 318 (459)
|++|++++ +.++.++ .+..+++|++|+++++
T Consensus 83 L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 83 LTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred hhEEECCC-CccceeCHHHhccccCCCEEEeCCC
Confidence 88888887 6777777 3777788888888774
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.47 E-value=7.1e-07 Score=77.24 Aligned_cols=99 Identities=19% Similarity=0.187 Sum_probs=61.3
Q ss_pred cEEeeccCCCCccccCCCCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCC
Q 039619 207 QYLLIQDCPTIGSFTANCFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPAS 286 (459)
Q Consensus 207 ~~L~l~~c~~l~~lp~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~ 286 (459)
+.+++++ ..++.+|. ..+++|++|++++|.++... +. .+..+++|++|++++ +.+..++... ...+++
T Consensus 12 ~~l~~s~-n~l~~ip~-~~~~~l~~L~L~~N~i~~~~-~~---~~~~l~~L~~L~Ls~---N~l~~l~~~~---f~~l~~ 79 (170)
T 3g39_A 12 TTVDCSG-KSLASVPT-GIPTTTQVLYLYDNQITKLE-PG---VFDRLTQLTRLDLDN---NQLTVLPAGV---FDKLTQ 79 (170)
T ss_dssp TEEECTT-SCCSSCCS-CCCTTCSEEECCSSCCCCCC-TT---TTTTCTTCSEEECCS---SCCCCCCTTT---TTTCTT
T ss_pred CEEEeCC-CCcCccCc-cCCCCCcEEEcCCCcCCccC-hh---hhcCcccCCEEECCC---CCcCccChhh---ccCCCC
Confidence 4455544 23444443 23455666666665555433 33 567788888888887 4666666543 024667
Q ss_pred cceEEeecCCCCCccC--CCCCCCCCCEEeccCC
Q 039619 287 LKHLSIWNFPNLERIS--SIENLTSFESLQLCCC 318 (459)
Q Consensus 287 L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c 318 (459)
|++|++++ +.++.++ .+..+++|++|+++++
T Consensus 80 L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 80 LTQLSLND-NQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCC-CccCEeCHHHhcCCCCCCEEEeCCC
Confidence 77777777 6777776 4677777788877774
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.42 E-value=1.1e-06 Score=76.00 Aligned_cols=14 Identities=14% Similarity=0.297 Sum_probs=8.0
Q ss_pred CCCCCccCEEEEeC
Q 039619 251 LHRFTSVRLLTLFG 264 (459)
Q Consensus 251 l~~l~~L~~L~l~~ 264 (459)
+..+++|+.|++++
T Consensus 98 ~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 98 FDNLKSLTHIWLLN 111 (170)
T ss_dssp TTTCTTCCEEECCS
T ss_pred hcCCCCCCEEEeCC
Confidence 45555556666555
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.39 E-value=1.3e-06 Score=75.82 Aligned_cols=14 Identities=14% Similarity=0.408 Sum_probs=7.7
Q ss_pred CCCCCccCEEEEeC
Q 039619 251 LHRFTSVRLLTLFG 264 (459)
Q Consensus 251 l~~l~~L~~L~l~~ 264 (459)
+..+++|+.|++++
T Consensus 101 ~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 101 FDNLKSLTHIYLYN 114 (174)
T ss_dssp TTTCTTCSEEECCS
T ss_pred hccccCCCEEEeCC
Confidence 44555555555555
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.18 E-value=3.7e-06 Score=81.40 Aligned_cols=98 Identities=20% Similarity=0.269 Sum_probs=63.7
Q ss_pred eEEeecccCCccccccCCCCCcccEEeeccccCcccCc-ccCCCCCCccEEeeccCCCCccccCC--CCCCCccEEEEec
Q 039619 160 HLYIISCSNLESIAEGLDDNTSLETMEIFICQNLKALP-NGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDY 236 (459)
Q Consensus 160 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~ 236 (459)
.++.++.+.++.+|. +..+++|++|+|++++.+..+| ..+..+++|+.|+|+++ .+..++.. ..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence 345555336777887 8888888888888644676666 45778888888888775 56666543 3366777777777
Q ss_pred CcccccccccCCCCCCCCCccCEEEEeC
Q 039619 237 EKIYKPLILERGPGLHRFTSVRLLTLFG 264 (459)
Q Consensus 237 ~~l~~~~~~~~~~~l~~l~~L~~L~l~~ 264 (459)
|+++... +. .+..++ |+.|++.+
T Consensus 90 N~l~~~~-~~---~~~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 90 NALESLS-WK---TVQGLS-LQELVLSG 112 (347)
T ss_dssp SCCSCCC-ST---TTCSCC-CCEEECCS
T ss_pred CccceeC-HH---HcccCC-ceEEEeeC
Confidence 6665432 22 233333 77777766
No 144
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=7.5e-07 Score=76.92 Aligned_cols=68 Identities=15% Similarity=0.250 Sum_probs=41.2
Q ss_pred CCCCCCccCEEEEeCCcCCCcee-----cCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCC
Q 039619 250 GLHRFTSVRLLTLFGGECCGVVS-----FPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQ 322 (459)
Q Consensus 250 ~l~~l~~L~~L~l~~~~c~~l~~-----l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~ 322 (459)
.+..+++|++|++++ |..++. +.... ...++|++|++++|.++++-. .+..+++|++|++++|+.++
T Consensus 80 ~L~~~~~L~~L~L~~--C~~ItD~gL~~L~~~~----~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 80 HMEGLQYVEKIRLCK--CHYIEDGCLERLSQLE----NLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GGTTCSCCCEEEEES--CTTCCHHHHHHHHTCH----HHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred HhcCCCCCCEEEeCC--CCccCHHHHHHHHhcc----cccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 456778888888888 765432 22100 002357777777777776544 44556667777777766655
Q ss_pred c
Q 039619 323 K 323 (459)
Q Consensus 323 ~ 323 (459)
.
T Consensus 154 d 154 (176)
T 3e4g_A 154 E 154 (176)
T ss_dssp C
T ss_pred c
Confidence 4
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.09 E-value=0.00067 Score=66.67 Aligned_cols=119 Identities=18% Similarity=0.132 Sum_probs=68.2
Q ss_pred CCCCCccEEeeccCCCCccccCC--CCCCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCC
Q 039619 201 RNLTSLQYLLIQDCPTIGSFTAN--CFPTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKD 278 (459)
Q Consensus 201 ~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~ 278 (459)
..+..|+.+.+.. ....+... .....++.+......+.. ..+..+.+|+.+.+.. .+..++...
T Consensus 250 ~~~~~l~~~~~~~--~~~~i~~~~F~~~~~l~~~~~~~~~i~~-------~~F~~~~~L~~i~l~~----~i~~I~~~a- 315 (394)
T 4fs7_A 250 YGCTDLESISIQN--NKLRIGGSLFYNCSGLKKVIYGSVIVPE-------KTFYGCSSLTEVKLLD----SVKFIGEEA- 315 (394)
T ss_dssp TTCSSCCEEEECC--TTCEECSCTTTTCTTCCEEEECSSEECT-------TTTTTCTTCCEEEECT----TCCEECTTT-
T ss_pred cccccceeEEcCC--CcceeeccccccccccceeccCceeecc-------cccccccccccccccc----ccceechhh-
Confidence 4455566655543 12233322 124455555544332221 1456677788777765 455565532
Q ss_pred CCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEee
Q 039619 279 TGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIY 339 (459)
Q Consensus 279 ~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~ 339 (459)
...+.+|+.+++. +.++.++ .+.++++|+.+.+.. .++.++...+ +.+|+.+++.
T Consensus 316 --F~~c~~L~~i~lp--~~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 316 --FESCTSLVSIDLP--YLVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp --TTTCTTCCEECCC--TTCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred --hcCCCCCCEEEeC--CcccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 1245678888876 3577776 677788888888854 3667766544 5677777764
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.08 E-value=9.5e-06 Score=78.43 Aligned_cols=98 Identities=22% Similarity=0.279 Sum_probs=63.3
Q ss_pred EEecCCCCccccCCccccccCcEEEeecCCCceeecc--ccccccccceEEeecccCCcccc-ccCCCCCcccEEeeccc
Q 039619 114 QIIPCPSLTSLWSKSELPATLENIYVDRCSKLAFLSL--RGNLSKALKHLYIISCSNLESIA-EGLDDNTSLETMEIFIC 190 (459)
Q Consensus 114 ~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l~~--~~~lp~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c 190 (459)
+.++.+.++.+|. +..+++|++|+|++.+.++.++. ...+ ++|++|+|+++ .+..++ ..+..+++|+.|+|+++
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l-~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGL-GELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSC-CCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccc-cCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 3344225677775 55556788888876567777763 3566 77888888774 566664 35677788888888775
Q ss_pred cCcccCcccCCCCCCccEEeeccCC
Q 039619 191 QNLKALPNGLRNLTSLQYLLIQDCP 215 (459)
Q Consensus 191 ~~l~~lp~~l~~l~~L~~L~l~~c~ 215 (459)
.+..+|..+.....|+.|++.+++
T Consensus 91 -~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 -ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp -CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred -ccceeCHHHcccCCceEEEeeCCC
Confidence 566666544333337777776643
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.91 E-value=5e-06 Score=80.96 Aligned_cols=9 Identities=11% Similarity=0.128 Sum_probs=5.3
Q ss_pred cccceEEee
Q 039619 156 KALKHLYII 164 (459)
Q Consensus 156 ~~L~~L~l~ 164 (459)
++|+.|.+.
T Consensus 139 ~~L~~L~l~ 147 (362)
T 2ra8_A 139 AHFEGLFWG 147 (362)
T ss_dssp TTCSEEEEC
T ss_pred chhhheeec
Confidence 566666654
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.85 E-value=6.9e-06 Score=70.85 Aligned_cols=18 Identities=39% Similarity=0.580 Sum_probs=9.7
Q ss_pred CCCCCccCEEEEeCCcCCCc
Q 039619 251 LHRFTSVRLLTLFGGECCGV 270 (459)
Q Consensus 251 l~~l~~L~~L~l~~~~c~~l 270 (459)
+..+++|++|++++ |..+
T Consensus 135 L~~~~~L~~L~L~~--c~~I 152 (176)
T 3e4g_A 135 LHHFRNLKYLFLSD--LPGV 152 (176)
T ss_dssp GGGCTTCCEEEEES--CTTC
T ss_pred HhcCCCCCEEECCC--CCCC
Confidence 34455566666655 5544
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.80 E-value=1.2e-05 Score=78.33 Aligned_cols=12 Identities=17% Similarity=0.061 Sum_probs=7.3
Q ss_pred CCCcceEEeecC
Q 039619 284 PASLKHLSIWNF 295 (459)
Q Consensus 284 ~~~L~~L~l~~c 295 (459)
+++|+.|++++|
T Consensus 306 l~~L~~L~L~~n 317 (362)
T 2ra8_A 306 IKHLKFINMKYN 317 (362)
T ss_dssp HTTCSEEECCSB
T ss_pred CCcceEEECCCC
Confidence 456666666653
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.55 E-value=0.0057 Score=59.89 Aligned_cols=101 Identities=18% Similarity=0.202 Sum_probs=62.9
Q ss_pred CCCccEEEEecCcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--C
Q 039619 226 PTNLASVCIDYEKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--S 303 (459)
Q Consensus 226 ~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~ 303 (459)
+.+|+.+.+.++...-. . ..+.++++|+.+.+.. .+..++... ...+.+|+.+.+.+ +++.+. .
T Consensus 264 c~~L~~i~lp~~~~~I~--~---~aF~~c~~L~~i~l~~----~i~~I~~~a---F~~c~~L~~i~lp~--~v~~I~~~a 329 (394)
T 4gt6_A 264 CAYLASVKMPDSVVSIG--T---GAFMNCPALQDIEFSS----RITELPESV---FAGCISLKSIDIPE--GITQILDDA 329 (394)
T ss_dssp CSSCCEEECCTTCCEEC--T---TTTTTCTTCCEEECCT----TCCEECTTT---TTTCTTCCEEECCT--TCCEECTTT
T ss_pred cccccEEecccccceec--C---cccccccccccccCCC----cccccCcee---ecCCCCcCEEEeCC--cccEehHhH
Confidence 45666666654211100 1 2566777888877754 566666543 12456788888863 577776 6
Q ss_pred CCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCCc
Q 039619 304 IENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGCP 342 (459)
Q Consensus 304 l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~ 342 (459)
+.++.+|+.+.+.. .++.++...+ +.+|+.+++.+..
T Consensus 330 F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 330 FAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred hhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence 77788888888853 4677766444 5778888776653
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.52 E-value=2.1e-06 Score=84.17 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=20.2
Q ss_pred CCCcceEEeecCCCCCccC------CCCCCCCCCEEeccCC
Q 039619 284 PASLKHLSIWNFPNLERIS------SIENLTSFESLQLCCC 318 (459)
Q Consensus 284 ~~~L~~L~l~~c~~l~~l~------~l~~l~~L~~L~l~~c 318 (459)
+++|++|++++ +.++... .+...++|++|++++|
T Consensus 210 ~~~L~~L~Ls~-N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 210 NRQLQELNVAY-NGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp CSCCCEEECCS-SCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred CCCcCeEECCC-CCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 34677777776 4554322 2334567777777775
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.44 E-value=6.6e-06 Score=80.56 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=8.7
Q ss_pred CCcceEEeecCCCCCc
Q 039619 285 ASLKHLSIWNFPNLER 300 (459)
Q Consensus 285 ~~L~~L~l~~c~~l~~ 300 (459)
++|++|++++ +.++.
T Consensus 239 ~~L~~L~Ls~-N~i~~ 253 (372)
T 3un9_A 239 PSLELLHLYF-NELSS 253 (372)
T ss_dssp SSCCEEECTT-SSCCH
T ss_pred CCCCEEeccC-CCCCH
Confidence 4566666666 44543
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.99 E-value=0.027 Score=54.98 Aligned_cols=138 Identities=14% Similarity=0.074 Sum_probs=84.3
Q ss_pred cccceEEeecccCCcccc-ccCCCCCcccEEeeccccCcccC-cccCCCCCCccEEeeccCCCCccccCC--CCCCCccE
Q 039619 156 KALKHLYIISCSNLESIA-EGLDDNTSLETMEIFICQNLKAL-PNGLRNLTSLQYLLIQDCPTIGSFTAN--CFPTNLAS 231 (459)
Q Consensus 156 ~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~~L~~ 231 (459)
.+|+.+.+.. .+..+. ..+..+.+|+.+.+... ...+ ...+..+..++.+..... .++.. ..+.+|+.
T Consensus 230 ~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~ 301 (394)
T 4fs7_A 230 TGVKNIIIPD--SFTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSV----IVPEKTFYGCSSLTE 301 (394)
T ss_dssp CCCCEEEECT--TCCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSS----EECTTTTTTCTTCCE
T ss_pred CCCceEEECC--CceecccccccccccceeEEcCCC--cceeeccccccccccceeccCce----eeccccccccccccc
Confidence 5666666653 334442 33556677777777543 2222 234456667777665431 23332 22567777
Q ss_pred EEEec--CcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCC
Q 039619 232 VCIDY--EKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENL 307 (459)
Q Consensus 232 L~l~~--~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l 307 (459)
+.+.+ ..+. . .++.++++|+.+++.. .++.++... ...+.+|+.+.+.. +++.++ .+.++
T Consensus 302 i~l~~~i~~I~----~---~aF~~c~~L~~i~lp~----~v~~I~~~a---F~~c~~L~~i~lp~--~l~~I~~~aF~~C 365 (394)
T 4fs7_A 302 VKLLDSVKFIG----E---EAFESCTSLVSIDLPY----LVEEIGKRS---FRGCTSLSNINFPL--SLRKIGANAFQGC 365 (394)
T ss_dssp EEECTTCCEEC----T---TTTTTCTTCCEECCCT----TCCEECTTT---TTTCTTCCEECCCT--TCCEECTTTBTTC
T ss_pred cccccccceec----h---hhhcCCCCCCEEEeCC----cccEEhHHh---ccCCCCCCEEEECc--cccEehHHHhhCC
Confidence 77765 2232 1 2678888999888865 466666543 12467888888864 477777 77788
Q ss_pred CCCCEEeccC
Q 039619 308 TSFESLQLCC 317 (459)
Q Consensus 308 ~~L~~L~l~~ 317 (459)
++|+.+++..
T Consensus 366 ~~L~~i~lp~ 375 (394)
T 4fs7_A 366 INLKKVELPK 375 (394)
T ss_dssp TTCCEEEEEG
T ss_pred CCCCEEEECC
Confidence 8888888854
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.97 E-value=0.13 Score=49.74 Aligned_cols=59 Identities=17% Similarity=0.203 Sum_probs=29.4
Q ss_pred CCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEecc
Q 039619 250 GLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLC 316 (459)
Q Consensus 250 ~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~ 316 (459)
.+.++.+|+.+.+.. .+..++... ...+.+|+.+.+.+ +.++.++ .+.++.+|+.+.+.
T Consensus 258 aF~~~~~l~~i~l~~----~i~~i~~~a---F~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 258 LLQNCTALKTLNFYA----KVKTVPYLL---CSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTTCTTCCEEEECC----CCSEECTTT---TTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred ccceeehhccccccc----cceeccccc---cccccccccccccc-cccceehhhhhcCCCCCCEEEcC
Confidence 345555566655543 344444322 11345566665554 4455555 45555566665553
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.86 E-value=0.014 Score=57.05 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=47.9
Q ss_pred CCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCCCCCcCCCC
Q 039619 250 GLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCPKLQKFPDN 327 (459)
Q Consensus 250 ~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~lp~~ 327 (459)
.+.++.+|+.+.+.. .+..+.... .....+|+.+.+. +.++.++ .+.++.+|+.+.+.+ .++.+...
T Consensus 260 aF~~c~~L~~i~lp~----~~~~I~~~a---F~~c~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~ 328 (394)
T 4gt6_A 260 AFDSCAYLASVKMPD----SVVSIGTGA---FMNCPALQDIEFS--SRITELPESVFAGCISLKSIDIPE--GITQILDD 328 (394)
T ss_dssp TTTTCSSCCEEECCT----TCCEECTTT---TTTCTTCCEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTT
T ss_pred eeeecccccEEeccc----ccceecCcc---cccccccccccCC--CcccccCceeecCCCCcCEEEeCC--cccEehHh
Confidence 456677777777755 333444322 1245677777775 4667776 667777888887753 46666654
Q ss_pred CC--CCCcceEEe
Q 039619 328 GL--PTSLLRLEI 338 (459)
Q Consensus 328 ~l--~~sL~~L~i 338 (459)
.+ +.+|+.+.+
T Consensus 329 aF~~C~~L~~i~i 341 (394)
T 4gt6_A 329 AFAGCEQLERIAI 341 (394)
T ss_dssp TTTTCTTCCEEEE
T ss_pred HhhCCCCCCEEEE
Confidence 44 456666666
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.12 E-value=0.84 Score=43.82 Aligned_cols=96 Identities=9% Similarity=0.104 Sum_probs=62.9
Q ss_pred CCCccEEEEec--CcccccccccCCCCCCCCCccCEEEEeCCcCCCceecCCCCCCCccCCCCcceEEeecCCCCCccC-
Q 039619 226 PTNLASVCIDY--EKIYKPLILERGPGLHRFTSVRLLTLFGGECCGVVSFPPEKDTGKALPASLKHLSIWNFPNLERIS- 302 (459)
Q Consensus 226 ~~~L~~L~l~~--~~l~~~~~~~~~~~l~~l~~L~~L~l~~~~c~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~- 302 (459)
..+|+.+.+.. ..+. . ..+.++..|+.+.+.. .+..+.... .....+|+.+.+. .+++.++
T Consensus 216 ~~~l~~i~~~~~~~~i~----~---~~f~~~~~L~~i~lp~----~v~~I~~~a---F~~~~~l~~i~l~--~~i~~i~~ 279 (379)
T 4h09_A 216 GKNLKKITITSGVTTLG----D---GAFYGMKALDEIAIPK----NVTSIGSFL---LQNCTALKTLNFY--AKVKTVPY 279 (379)
T ss_dssp CSSCSEEECCTTCCEEC----T---TTTTTCSSCCEEEECT----TCCEECTTT---TTTCTTCCEEEEC--CCCSEECT
T ss_pred ccccceeeeccceeEEc----c---ccccCCccceEEEcCC----CccEeCccc---cceeehhcccccc--ccceeccc
Confidence 45666666654 2221 1 1567788888888866 456665533 1245678888886 4677777
Q ss_pred -CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEe
Q 039619 303 -SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEI 338 (459)
Q Consensus 303 -~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i 338 (459)
.+..+++|+.+.+.+ ..++.++...+ +.+|+.+.+
T Consensus 280 ~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp TTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEEC
T ss_pred cccccccccccccccc-cccceehhhhhcCCCCCCEEEc
Confidence 677889999998865 35777776544 466777666
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.26 E-value=0.0072 Score=55.73 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=25.1
Q ss_pred cccceEEeecccCCccc---cccCCCCCcccEEeeccccCcccCcccCCCCC--CccEEeeccCC
Q 039619 156 KALKHLYIISCSNLESI---AEGLDDNTSLETMEIFICQNLKALPNGLRNLT--SLQYLLIQDCP 215 (459)
Q Consensus 156 ~~L~~L~l~~c~~l~~l---p~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~--~L~~L~l~~c~ 215 (459)
++|+.|+|+++ .+..+ |..+..+++|+.|+|+++ .+..+ ..+..+. +|++|++++++
T Consensus 170 ~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 170 PELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp TTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTST
T ss_pred CCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCc
Confidence 45555555553 33332 233334555555555554 33332 1122222 55555555544
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.20 E-value=0.0063 Score=56.11 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=22.3
Q ss_pred CCCcccEEeeccccCcccC---cccCCCCCCccEEeeccCCCCccc
Q 039619 178 DNTSLETMEIFICQNLKAL---PNGLRNLTSLQYLLIQDCPTIGSF 220 (459)
Q Consensus 178 ~l~~L~~L~l~~c~~l~~l---p~~l~~l~~L~~L~l~~c~~l~~l 220 (459)
++++|+.|+++++ .+..+ |..+..+++|+.|+|+++ .+..+
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~ 211 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE 211 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCc
Confidence 3566777777765 34333 233345666666666553 34433
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.00 E-value=0.0037 Score=54.34 Aligned_cols=12 Identities=25% Similarity=0.235 Sum_probs=5.7
Q ss_pred CCcccEEeeccc
Q 039619 179 NTSLETMEIFIC 190 (459)
Q Consensus 179 l~~L~~L~l~~c 190 (459)
.++|++|++++|
T Consensus 64 ~~~L~~L~Ls~n 75 (185)
T 1io0_A 64 NTYVKKFSIVGT 75 (185)
T ss_dssp CCSCCEEECTTS
T ss_pred CCCcCEEECcCC
Confidence 344445554444
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.96 E-value=0.0034 Score=54.53 Aligned_cols=54 Identities=28% Similarity=0.295 Sum_probs=28.7
Q ss_pred cccceEEeecccCCcc-----ccccCCCCCcccEEeeccccCcc-----cCcccCCCCCCccEEee
Q 039619 156 KALKHLYIISCSNLES-----IAEGLDDNTSLETMEIFICQNLK-----ALPNGLRNLTSLQYLLI 211 (459)
Q Consensus 156 ~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~c~~l~-----~lp~~l~~l~~L~~L~l 211 (459)
++|++|++++|. +.. +...+...++|++|++++| .+. .+...+...++|++|++
T Consensus 65 ~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 65 TYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp CSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred CCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEe
Confidence 566666666653 322 2233334466777777665 232 13334455566666666
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.12 E-value=0.091 Score=42.53 Aligned_cols=45 Identities=22% Similarity=0.446 Sum_probs=29.7
Q ss_pred CCce--ecCCCCCCCccCCCCcceEEeecCCCCCccC--CCCCCCCCCEEeccCCC
Q 039619 268 CGVV--SFPPEKDTGKALPASLKHLSIWNFPNLERIS--SIENLTSFESLQLCCCP 319 (459)
Q Consensus 268 ~~l~--~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~ 319 (459)
.+++ .+|.. .+.+|+.|+|++ |.++.++ .+..+++|++|++.+++
T Consensus 18 ~~L~~~~vP~~------lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 18 RGLTWASLPTA------FPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp SCCCTTTSCSC------CCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCccccCCCC------CCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 3455 66653 456777777777 7777777 45666777777776643
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.04 E-value=0.76 Score=36.95 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=38.6
Q ss_pred eEEeecCCCCC--ccC-CCCCCCCCCEEeccCCCCCCcCCCCCC--CCCcceEEeeCCc
Q 039619 289 HLSIWNFPNLE--RIS-SIENLTSFESLQLCCCPKLQKFPDNGL--PTSLLRLEIYGCP 342 (459)
Q Consensus 289 ~L~l~~c~~l~--~l~-~l~~l~~L~~L~l~~c~~l~~lp~~~l--~~sL~~L~i~~c~ 342 (459)
.++.++ ++++ .+| .+. ++|++|++++ ++|+.++...+ +++|+.|++.++|
T Consensus 12 ~v~Cs~-~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCS-SCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCC-CCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 455565 6777 787 443 5799999998 68999997554 6799999999875
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=55.31 E-value=6.3 Score=34.03 Aligned_cols=14 Identities=7% Similarity=0.145 Sum_probs=7.1
Q ss_pred CCCCCccEEeeccC
Q 039619 201 RNLTSLQYLLIQDC 214 (459)
Q Consensus 201 ~~l~~L~~L~l~~c 214 (459)
..-++|+.|+|++|
T Consensus 67 ~~N~~L~~L~L~~n 80 (197)
T 1pgv_A 67 CNSKHIEKFSLANT 80 (197)
T ss_dssp TTCSCCCEEECTTS
T ss_pred hhCCCcCEEEccCC
Confidence 33445555555543
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=52.36 E-value=4.5 Score=34.96 Aligned_cols=10 Identities=10% Similarity=-0.164 Sum_probs=4.6
Q ss_pred CccCEEEEeC
Q 039619 255 TSVRLLTLFG 264 (459)
Q Consensus 255 ~~L~~L~l~~ 264 (459)
++|++|+++.
T Consensus 157 ~tL~~L~l~~ 166 (197)
T 1pgv_A 157 ESLLRVGISF 166 (197)
T ss_dssp SSCCEEECCC
T ss_pred CCcCeEeccC
Confidence 3444554443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.45 E-value=1.3e+02 Score=22.27 Aligned_cols=31 Identities=16% Similarity=0.286 Sum_probs=13.8
Q ss_pred CCCcceEEeecCCCCCccC--CCCCCCCCCEEecc
Q 039619 284 PASLKHLSIWNFPNLERIS--SIENLTSFESLQLC 316 (459)
Q Consensus 284 ~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~ 316 (459)
+.+|+++.|-. .++.+. .+.++.+|+.+.+.
T Consensus 19 c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 19 NTVIREITVQP--NIGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEEC
T ss_pred CCCCcEEEcCC--chheEcHHHHhccCCccEEEEc
Confidence 34444444442 344444 34444445444443
No 166
>3of6_D PRE T-cell antigen receptor alpha; IG fold, immune system; HET: NAG; 2.80A {Homo sapiens}
Probab=20.10 E-value=58 Score=24.50 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=23.5
Q ss_pred CceeeeEEeecccccceeEEEEe-cc-------c-----ccccccccc
Q 039619 423 GLRAPLVVTGLSLSNRIKLYYYC-DP-------Y-----ELGKWASLS 457 (459)
Q Consensus 423 gf~~~~~~~~~~~~~~~~~~~~~-~~-------~-----~~~~~~~~~ 457 (459)
-..+|.|+..-....+..|||.. .+ | .||+|+++.
T Consensus 31 tlVvClVLdvappg~dspiWFSagNGs~lDAFTYgPspa~DGtWtsla 78 (130)
T 3of6_D 31 MVVVCLVLDVAPPGLDSPIWFSAGNGSALDAFTYGPSPATDGTWTNLA 78 (130)
T ss_dssp EEEEEEEEEECCCSSCCCCEEECSSSCEECCEECCCEEETTTEEEEEE
T ss_pred EEEEEEEEeccCCCCCCCeEEEcCCCcceeeeeecCCCCCCCceeeee
Confidence 46778888776666666667661 11 1 599999874
Done!