Query 039620
Match_columns 486
No_of_seqs 137 out of 168
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 11:29:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039620.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039620hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03254 XG_FTase: Xyloglucan 100.0 7E-190 2E-194 1477.3 40.7 442 13-454 33-476 (476)
2 PF05830 NodZ: Nodulation prot 99.8 8.8E-19 1.9E-23 176.5 13.2 265 92-422 3-300 (321)
3 PF10250 O-FucT: GDP-fucose pr 98.0 1.4E-05 3E-10 81.3 8.1 146 257-412 172-337 (351)
4 PF01531 Glyco_transf_11: Glyc 97.5 0.0006 1.3E-08 69.3 10.8 42 383-426 236-277 (298)
5 KOG3705 Glycoprotein 6-alpha-L 95.4 0.01 2.3E-07 63.1 3.0 157 235-413 317-483 (580)
6 KOG3849 GDP-fucose protein O-f 40.0 30 0.00066 36.1 3.5 278 86-409 24-359 (386)
7 PRK10727 DNA-binding transcrip 38.2 2.7E+02 0.0059 27.9 10.1 124 288-422 20-144 (343)
8 PRK09526 lacI lac repressor; R 35.3 2.8E+02 0.006 27.7 9.6 124 289-423 25-151 (342)
9 cd00550 ArsA_ATPase Oxyanion-t 34.8 55 0.0012 32.6 4.5 47 92-138 1-49 (254)
10 PRK10014 DNA-binding transcrip 32.2 1.9E+02 0.0041 28.9 7.9 116 296-422 33-150 (342)
11 PRK10401 DNA-binding transcrip 30.3 4.1E+02 0.0089 26.7 10.0 116 296-422 28-144 (346)
12 COG1609 PurR Transcriptional r 29.1 5.8E+02 0.013 26.3 11.0 126 288-424 19-145 (333)
13 PF02374 ArsA_ATPase: Anion-tr 27.6 70 0.0015 33.0 3.9 48 92-139 2-51 (305)
14 cd07018 S49_SppA_67K_type Sign 26.6 30 0.00065 33.8 1.0 54 386-439 90-154 (222)
15 TIGR01481 ccpA catabolite cont 25.7 2.9E+02 0.0062 27.4 7.8 103 289-402 21-123 (329)
16 TIGR00706 SppA_dom signal pept 23.4 54 0.0012 31.6 2.1 47 387-433 75-132 (207)
17 TIGR02417 fruct_sucro_rep D-fr 23.2 6.4E+02 0.014 24.9 9.8 115 297-423 30-147 (327)
18 TIGR03029 EpsG chain length de 23.2 1.5E+02 0.0033 29.2 5.3 56 73-128 83-141 (274)
19 cd07023 S49_Sppa_N_C Signal pe 21.3 67 0.0015 30.8 2.3 47 386-432 79-136 (208)
20 PRK11303 DNA-binding transcrip 21.2 4.2E+02 0.0091 26.2 8.0 115 297-423 31-148 (328)
No 1
>PF03254 XG_FTase: Xyloglucan fucosyltransferase; InterPro: IPR004938 Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue []. ; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0042546 cell wall biogenesis, 0016020 membrane
Probab=100.00 E-value=7.2e-190 Score=1477.30 Aligned_cols=442 Identities=70% Similarity=1.241 Sum_probs=430.3
Q ss_pred cccccccCCCCcccCCccchhhhhhhhhccCCCCCCChHHHHHHHhHHHHhcccCCCchhHHHHHHHhhcCCCCCCCCcc
Q 039620 13 VPKELLGGLLSAEFDKKSCLSRYQSAFYRKELSRKPSSYLISRLRSYEALHQRCGPYTESYNKTLQKLKSGNQPESSDCN 92 (486)
Q Consensus 13 ~~d~llggll~~~fde~sC~SRy~s~~yrk~s~~~pspyL~s~LR~Ye~lHrrCgp~t~~y~~a~~~l~s~~~~~~~~Ck 92 (486)
..||||||||++||||+||+||||+++|||+++|+|||||++|||+||+|||||||||++|++|++||+|+++++.++||
T Consensus 33 ~~d~llgglL~~~fde~sC~SRy~~~~yrk~s~~~pSpyL~skLR~YE~lHrrCgp~t~~y~~a~~~L~s~~~~~~~~Ck 112 (476)
T PF03254_consen 33 PNDKLLGGLLSPGFDERSCLSRYQSSLYRKPSPHKPSPYLVSKLRRYEALHRRCGPGTESYNKAVEQLRSGHSDGTSECK 112 (476)
T ss_pred ccccccccccCCCCCcccccchhhhhhhcCCCCCCCCHHHHHHHHHHHHHHhhhCCCchhhHHHHHHHhccCCCCCCCCc
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred EEEEcccCCchhhHHHHHHHHHHHHHhCceeeeCCCCCccccccCCCCCCccccCCCCCccccccCCCCCCchhhhhhhh
Q 039620 93 YLVWISFSGLGNRILTLASAFLYALLTNRVLLVDPGVDMVDLFCEPFPEVSWFLPSDFPLKTQFDSFDQISPHCYGRLLK 172 (486)
Q Consensus 93 YlVw~~~~GLGNRmlslaSaFLYALLT~RVLLVd~~~d~~~LFCEPFpgssWlLP~dFP~~~~~~~~~~~~~~syg~~l~ 172 (486)
||||++++|||||||+||||||||||||||||||+++||++|||||||||||+||+|||+.+.+.+++.++++|||||++
T Consensus 113 YvVw~~~~GLGNRmLslaSaFLYAlLT~RVLLV~~~~d~~~LFCEPFpgsSWlLP~dFP~~~~~~~~~~~~~~sygnml~ 192 (476)
T PF03254_consen 113 YVVWIPYSGLGNRMLSLASAFLYALLTNRVLLVDPGKDMADLFCEPFPGSSWLLPPDFPLKNQLNGFSQESAESYGNMLK 192 (476)
T ss_pred EEEEecCCchHHHHHHHHHHHHHHHHhCcEEEEecCCchhhhhcCCCCCCceeCcCCCCchhhccCCCCCchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998788999999999999999
Q ss_pred cCCCCCCCCCCCcEEEEEeccCCCCCCceeeccccccccCCcCEEEEeecceeeeecccCcchHHHHhhcCCCCCchhhh
Q 039620 173 NNNTMNSNGSSRSFVYLHLVHDYDDHDKLFFCDEDQSFLQKVPWLIMKTDNYYIPSLFLIPSFEQELSNLFPNKDSVFHF 252 (486)
Q Consensus 173 n~~~~~~~~~~p~~vyl~L~~~~~~~D~~FfCd~~q~~L~~vpWL~~~sd~YfvP~LFl~P~f~~eL~~lFP~k~~vFhh 252 (486)
|+.++++...+|+|+|+||+|+++++|++||||++|++|++||||+|+||+||||+||+||+|++||++|||+||+||||
T Consensus 193 ~~~~~~~~~~~p~~vyl~L~~~~~~~d~~FfCd~~Q~~L~~vpWLil~sd~YFvP~LFl~P~f~~eL~~lFP~k~tvFhh 272 (476)
T PF03254_consen 193 NKSINNSDNSLPPYVYLHLEHDYDDHDKLFFCDEDQALLRKVPWLILRSDQYFVPSLFLVPSFRPELDRLFPEKDTVFHH 272 (476)
T ss_pred cCCccccccCCCceeEEEecccCCcCCCceecCccHHHHhcCCeEEEecCcceeehhhhchHHHHHHHHhcCChhHHHHH
Confidence 99998876789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCchhhhHHHHHHHHhhccCCceeEEEEEeecCCCCchHHHHHHHHHHHhhhccCCcc-chhhh-hhcccCCC
Q 039620 253 LGRYLFHPTNPVWGLITRYYDAYLARADERIGIQIRVFDTGVGPFQYVLDQILACTLKENLLPKV-DKEKA-IIRQSWNQ 330 (486)
Q Consensus 253 L~RYLfhPsn~VW~~Itrfy~ayLa~a~~rIGIQIR~f~~~~~~~~~~~~qI~~C~~~e~lLP~v-~~~~~-~~~~~~~~ 330 (486)
||||||||+|+||++|+|||++|||+||+|||||||+|+.+++++++++|||++|+++|||||+| +.+++ ++++++++
T Consensus 273 L~RYLfhPsN~VW~~Itryy~ayLa~Ad~riGIQIRvf~~~~~~~~~~~dqIl~C~~~e~LLP~v~~~~~~~~~~~~~~~ 352 (476)
T PF03254_consen 273 LGRYLFHPSNQVWGLITRYYDAYLAKADERIGIQIRVFDPKPGPFQHVLDQILSCTQQEKLLPEVVDTQEPAASSSSKSQ 352 (476)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHccCcCceeEEEEEecCCCCCcchhHHHHHHHHHhhcccCCCccccccccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999 44444 45667788
Q ss_pred ceeEEEEecCChhHHHHHHHHhccCccccccEEEEeCCCchhhhhccchhhhHHHHHHHHHhhccCceeecCCCchhHHH
Q 039620 331 TSKAVILTSLSSGYFEKMRDMYWEYPTVTGEVIGIYQPSQERYQQTEKRTHNRKAWAEMYLLSLTDVLVTSSWSTFGYVA 410 (486)
Q Consensus 331 ~~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShe~~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS~~STFGYVA 410 (486)
++||||||||++||||+||+|||+++|++||+|+||||||||+|++|+++|||||||||||||+||+||||+||||||||
T Consensus 353 ~~kaVlVtSL~~~yye~lr~~Y~~~~t~tGe~V~V~QpShe~~Q~~~~~~h~~kAlaEmyLLS~sD~LVTS~~STFGYVA 432 (476)
T PF03254_consen 353 KSKAVLVTSLYSEYYEKLRNMYWEHPTVTGEVVGVHQPSHEEYQQFGDNMHNQKALAEMYLLSLSDVLVTSGWSTFGYVA 432 (476)
T ss_pred ceEEEEEEeCCHHHHHHHHHHHhcCCCcCCcEEEEECCCCcccccccccchHHHHHHHHHHHHhccceEecCCCCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCcceEeeCCCCCCCCCCCcccCCCCCCCCCCCCCCccCc
Q 039620 411 QSLGGLRPWILYKPENHTAPDPPCHRAMSMEPCFHAPPFYDCKA 454 (486)
Q Consensus 411 qgLgGl~Pwil~~~~~~~~~~ppC~r~~S~EPCfh~pp~~~C~~ 454 (486)
|||||||||||++|+|+++|||||+|++|||||||+||+|||+|
T Consensus 433 qgLgGl~PwiL~~~~~~~~~~ppC~r~~S~EPCfh~pp~~dC~a 476 (476)
T PF03254_consen 433 QGLGGLRPWILYKPENQTVPDPPCVRAMSMEPCFHAPPFYDCKA 476 (476)
T ss_pred HhhcCCCceEEecCcccCCCCCCCcCCCCCCCCCCCCCcCCCCC
Confidence 99999999999999999999999999999999999999999986
No 2
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=99.79 E-value=8.8e-19 Score=176.50 Aligned_cols=265 Identities=21% Similarity=0.277 Sum_probs=141.9
Q ss_pred cEEEEcccCCchhhHHHHHHHHHHHHHhCceeeeCCCCCccccccCCCCCCccccCCCCCccccccCCCCCCchhhhhhh
Q 039620 92 NYLVWISFSGLGNRILTLASAFLYALLTNRVLLVDPGVDMVDLFCEPFPEVSWFLPSDFPLKTQFDSFDQISPHCYGRLL 171 (486)
Q Consensus 92 kYlVw~~~~GLGNRmlslaSaFLYALLT~RVLLVd~~~d~~~LFCEPFpgssWlLP~dFP~~~~~~~~~~~~~~syg~~l 171 (486)
||||..+-.||||++.+|+||--||==|+|.|.|||+++ -+..+||-| .||.- |.... ..-|+++
T Consensus 3 r~~~~r~r~g~gd~l~~la~aw~~a~~~~r~l~idw~~s--~~~~~~f~n-------~f~~f--fepv~----~i~~~~~ 67 (321)
T PF05830_consen 3 RFVVSRRRTGLGDCLWSLAAAWRYAKRTGRTLVIDWRGS--CYLDQPFTN-------AFPVF--FEPVE----DIAGVRV 67 (321)
T ss_dssp -EEEEE--S-HHHHHHHHHHHHHHHHHHT-EEEEE-BT---TT-SSTTSB-------SHHHH--B---S----EETTEEE
T ss_pred ceEEEeccCCchhHHHHHHHHHHHHHHhCCeEEEEcCCc--eecCCcccc-------cCCcc--cchhh----hhcCcee
Confidence 799999999999999999999999999999999999963 334466655 34431 11000 0011222
Q ss_pred h-cCCCCCCC---CCCCcEEEEEeccCCCCCCceeeccccccccCCcCEEEEeecceeeeecccCcchHHHHhhcCCCCC
Q 039620 172 K-NNNTMNSN---GSSRSFVYLHLVHDYDDHDKLFFCDEDQSFLQKVPWLIMKTDNYYIPSLFLIPSFEQELSNLFPNKD 247 (486)
Q Consensus 172 ~-n~~~~~~~---~~~p~~vyl~L~~~~~~~D~~FfCd~~q~~L~~vpWL~~~sd~YfvP~LFl~P~f~~eL~~lFP~k~ 247 (486)
. ++.++.-+ .-.|.+. . .......+|+++|-+ .=++||+.||-..+
T Consensus 68 ~~~d~i~~~~~~g~~fp~~w------~-~p~~~~~~~pd~qi~-----------------------re~d~l~~lf~~~~ 117 (321)
T PF05830_consen 68 ICDDRINQFSFPGPFFPAWW------N-KPSIDCVYRPDEQIF-----------------------RERDELRQLFQSQE 117 (321)
T ss_dssp E-SGGGGT----SSEESGGG------G-S-GGGGS---HHHHH-----------------------HHHHHHHHHHHSSS
T ss_pred EecchhhhhcCCCCcChhHH------h-CCCcceecCChHHHh-----------------------hhhHHHHHHhhccc
Confidence 2 11111100 0112211 0 011233455555531 11567777774433
Q ss_pred -----chhh--h--------hcc---cccCCCchhhhHHHHHHHHhhccCCceeEEEEEeecCCCC-----ch---HHHH
Q 039620 248 -----SVFH--F--------LGR---YLFHPTNPVWGLITRYYDAYLARADERIGIQIRVFDTGVG-----PF---QYVL 301 (486)
Q Consensus 248 -----~vFh--h--------L~R---YLfhPsn~VW~~Itrfy~ayLa~a~~rIGIQIR~f~~~~~-----~~---~~~~ 301 (486)
+|-+ . +-| --+.|+..|-.+|..+|+.+|++ ...|||+||..+.+.. .+ +..+
T Consensus 118 d~~a~~vv~d~c~~~~c~~~aeR~if~slkpR~eIqarID~iy~ehf~g-~~~IGVHVRhGngeD~~~h~~~~~D~e~~L 196 (321)
T PF05830_consen 118 DHEANTVVCDACLMWRCDEEAEREIFSSLKPRPEIQARIDAIYREHFAG-YSVIGVHVRHGNGEDIMDHAPYWADEERAL 196 (321)
T ss_dssp --S-SEEEE-S--TTSS-HHHHHHHHHHS-B-HHHHHHHHHHHHHHTTT-SEEEEEEE---------------HHHHHHH
T ss_pred ccccchhhhHhhcCCcchhHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-CceEEEEEeccCCcchhccCccccCchHHH
Confidence 1111 0 111 22689999999999999999964 6699999997755311 11 1245
Q ss_pred HHHHHHHhhhccCCccchhhhhhcccCCCceeEEEEecCChhHHHHHHHHhccCccccccEEEEeCCCchhhhhccc--h
Q 039620 302 DQILACTLKENLLPKVDKEKAIIRQSWNQTSKAVILTSLSSGYFEKMRDMYWEYPTVTGEVIGIYQPSQERYQQTEK--R 379 (486)
Q Consensus 302 ~qI~~C~~~e~lLP~v~~~~~~~~~~~~~~~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShe~~Q~~~~--~ 379 (486)
++|..-..+.+.++ ..+.+.|||+|++++..|++|..|.+..|. ..-+++++.+.-+..+ .
T Consensus 197 ~~V~~ai~~ak~~~-------------~~k~~~IFLATDSaeVid~fr~~FPdiiti----~k~F~~~~~g~Lhs~~~g~ 259 (321)
T PF05830_consen 197 RQVCTAIDKAKALA-------------PPKPVRIFLATDSAEVIDQFRKKFPDIITI----PKQFPASQAGPLHSAAVGI 259 (321)
T ss_dssp HHHHHHHHHHHTS---------------SS-EEEEEEES-HHHHHHHHHHSTTEE--------------------HHHHH
T ss_pred HHHHHHHHHHHhcc-------------CCCCeeEEEecCcHHHHHHHHHHCCCeEEc----ccccCCCCCCcCccccccc
Confidence 56644444433332 234589999999999999999999764433 2236677764332222 1
Q ss_pred hhhHHHHHHHHHhhccCcee-ecCCCchhHHHHhhcCCcceEee
Q 039620 380 THNRKAWAEMYLLSLTDVLV-TSSWSTFGYVAQSLGGLRPWILY 422 (486)
Q Consensus 380 ~h~~kAlaEmyLLS~sD~LV-tS~~STFGYVAqgLgGl~Pwil~ 422 (486)
.+-.+||+||||||.||+|| .|+-|+|+-+|+=++ |=|+-
T Consensus 260 ~gg~~ALIDM~LLSrCD~LIr~~ptS~Fsr~asl~~---pr~~~ 300 (321)
T PF05830_consen 260 EGGESALIDMYLLSRCDYLIRFPPTSAFSRYASLFV---PRVIE 300 (321)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEESTT-GGGHHHHHH----SEEEE
T ss_pred chHHHHHHHHHHHHhCCeEEEcCCCchhhhHHHHhc---chhee
Confidence 23478999999999999999 899999999999777 87763
No 3
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=98.03 E-value=1.4e-05 Score=81.32 Aligned_cols=146 Identities=16% Similarity=0.195 Sum_probs=69.9
Q ss_pred ccCCCchhhhHHHHHHHHhhccCCceeEEEEEee-cC----CCCchHHHHHHHHHHHhhhccC----------Cccchhh
Q 039620 257 LFHPTNPVWGLITRYYDAYLARADERIGIQIRVF-DT----GVGPFQYVLDQILACTLKENLL----------PKVDKEK 321 (486)
Q Consensus 257 LfhPsn~VW~~Itrfy~ayLa~a~~rIGIQIR~f-~~----~~~~~~~~~~qI~~C~~~e~lL----------P~v~~~~ 321 (486)
.+++++.|-.+.++|-+..+++...=|||++|+- |. ......+.+ +-.+|..+..+. |......
T Consensus 172 ~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~~~~C~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 250 (351)
T PF10250_consen 172 YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDWFSACEFKGERHLL-ASPRCWGKKSINPEKKRRNGCCPSTPQEA 250 (351)
T ss_dssp G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHHHHHHCT-T----T-TTHHHH-GGGTT-----HHHHS--HHHHH
T ss_pred EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCchHhhcccCCchHHH-HHhHhhccccccchhhhhcCCCCChHHHH
Confidence 6899999999999999999977889999999997 54 000001111 123344222222 2111000
Q ss_pred hh-hcccCCCceeEEEEecCCh----hHHHHHHHHhccCccccccEEEEeCCCchhhhhccchhhhHHHHHHHHHhhccC
Q 039620 322 AI-IRQSWNQTSKAVILTSLSS----GYFEKMRDMYWEYPTVTGEVIGIYQPSQERYQQTEKRTHNRKAWAEMYLLSLTD 396 (486)
Q Consensus 322 ~~-~~~~~~~~~kaVlVtSL~~----~y~e~lr~~Y~~~~t~~Ge~v~V~qPShe~~Q~~~~~~h~~kAlaEmyLLS~sD 396 (486)
.. .......+.+.|+|||+.. ...+.|+++|.+.-+. +.+ +++++.+.+.+ ++.|++|+++++.+|
T Consensus 251 ~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~--~~~----~~~~~~~~~~~---~~~a~vD~~i~~~s~ 321 (351)
T PF10250_consen 251 KQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTK--DDL----LSHEELEPLND---DQLAMVDQEICSRSD 321 (351)
T ss_dssp HHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGG--GT------EE--S--------S--HHHHHHHHHHSS
T ss_pred HHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEec--ccc----CCHHHhhhccc---cchhHHHHHHHhcCC
Confidence 00 0111234458999999993 2336666666543322 111 23556665544 689999999999999
Q ss_pred ceeecCCCchhHHHHh
Q 039620 397 VLVTSSWSTFGYVAQS 412 (486)
Q Consensus 397 ~LVtS~~STFGYVAqg 412 (486)
+.|.|..|||-..-.+
T Consensus 322 ~Figt~~Stfs~~i~~ 337 (351)
T PF10250_consen 322 VFIGTCGSTFSSNIAR 337 (351)
T ss_dssp EEEE-TT-HHHHHHHH
T ss_pred EEEecCcchhHHHhhc
Confidence 9999999999865443
No 4
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=97.53 E-value=0.0006 Score=69.29 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhccCceeecCCCchhHHHHhhcCCcceEeeCCCC
Q 039620 383 RKAWAEMYLLSLTDVLVTSSWSTFGYVAQSLGGLRPWILYKPEN 426 (486)
Q Consensus 383 ~kAlaEmyLLS~sD~LVtS~~STFGYVAqgLgGl~Pwil~~~~~ 426 (486)
..++.||+|||.||+.|.| -||||.-|+-|++= +=+.+.|..
T Consensus 236 ~~~~~Dl~lms~C~~~Iis-nSTFswW~a~L~~~-~~i~i~p~~ 277 (298)
T PF01531_consen 236 NSPYEDLYLMSQCKHFIIS-NSTFSWWAAYLSKN-DKIVIAPIK 277 (298)
T ss_pred CCHHHHHHHHHhCCcEEEC-CChHHHHHHHHCCC-CCEEEECCc
Confidence 3678899999999999999 59999999999884 444434433
No 5
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.01 Score=63.05 Aligned_cols=157 Identities=16% Similarity=0.213 Sum_probs=97.4
Q ss_pred hHHHHhhcCCCCCchh--hhhcccccCCCchhhhHHHHHHHHhhccCCceeEEEEEeecCCCC-----chHHHHHHH---
Q 039620 235 FEQELSNLFPNKDSVF--HFLGRYLFHPTNPVWGLITRYYDAYLARADERIGIQIRVFDTGVG-----PFQYVLDQI--- 304 (486)
Q Consensus 235 f~~eL~~lFP~k~~vF--hhL~RYLfhPsn~VW~~Itrfy~ayLa~a~~rIGIQIR~f~~~~~-----~~~~~~~qI--- 304 (486)
.-+.|.++--+. .|| .+...||++|.+..-..+++=-.+ |--....||+|||..+.-.+ +.++.|.-+
T Consensus 317 La~rL~rlHgdP-~vwwVgqFikYL~Rpqp~t~~~l~~a~k~-lg~~~PivGvhvRRTDKVGTEAAfH~~eEYM~~vE~~ 394 (580)
T KOG3705|consen 317 LAERLTRLHGDP-PVWWVGQFIKYLMRPQPATQEKLDKALKS-LGLDKPIVGVHVRRTDKVGTEAAFHALEEYMEWVEIW 394 (580)
T ss_pred HHHHHHHhcCCC-ceeeHHHHHHHHhCCChhhHHHHHHHHHh-CCCCCceeeEEEEecccccchhhhhhHHHHHHHHHHH
Confidence 455566666565 353 577889999999998888854432 33345799999999886432 223444322
Q ss_pred HHHHhhhccCCccchhhhhhcccCCCceeEEEEecCChhHHHHHHHHhccCccccccEEEEeCCCchhhhhccchhhhHH
Q 039620 305 LACTLKENLLPKVDKEKAIIRQSWNQTSKAVILTSLSSGYFEKMRDMYWEYPTVTGEVIGIYQPSQERYQQTEKRTHNRK 384 (486)
Q Consensus 305 ~~C~~~e~lLP~v~~~~~~~~~~~~~~~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShe~~Q~~~~~~h~~k 384 (486)
..-.. .+ .+.-.+.||++|+.+...++.|+.|.+...-+..-|..-.--|-.+. +. .-+-
T Consensus 395 f~~le-~r---------------g~~~~rRiflAsDDp~vv~EAk~kYPnYe~igd~eia~~A~l~nRYT---d~-sL~G 454 (580)
T KOG3705|consen 395 FKVLE-KR---------------GKPLERRIFLASDDPTVVPEAKNKYPNYEVIGDTEIAKTAQLNNRYT---DA-SLMG 454 (580)
T ss_pred HHHHH-Hh---------------CCchhheEEEecCCchhchHhhccCCCcEEeccHHHHHHhhccccch---hh-hhhh
Confidence 11111 00 01113789999999999999999998764321111110000011111 11 2255
Q ss_pred HHHHHHHhhccCceeecCCCchhHHHHhh
Q 039620 385 AWAEMYLLSLTDVLVTSSWSTFGYVAQSL 413 (486)
Q Consensus 385 AlaEmyLLS~sD~LVtS~~STFGYVAqgL 413 (486)
-..||++||.+|.||.|=-|----||--+
T Consensus 455 vIlDIh~LS~~d~LVCTFSSQVCRvaYEi 483 (580)
T KOG3705|consen 455 VILDIHILSKVDYLVCTFSSQVCRVAYEI 483 (580)
T ss_pred eeeeeeeecccceEEEechHHHHHHHHHH
Confidence 67899999999999999888877777543
No 6
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=39.99 E-value=30 Score=36.07 Aligned_cols=278 Identities=19% Similarity=0.316 Sum_probs=138.9
Q ss_pred CCCCCccEEEEcccCC-chhhHHHHHHHHHHHHHhCceeeeCCCCCccccccCCCCCCc-cccCCCCCccccccCCCCCC
Q 039620 86 PESSDCNYLVWISFSG-LGNRILTLASAFLYALLTNRVLLVDPGVDMVDLFCEPFPEVS-WFLPSDFPLKTQFDSFDQIS 163 (486)
Q Consensus 86 ~~~~~CkYlVw~~~~G-LGNRmlslaSaFLYALLT~RVLLVd~~~d~~~LFCEPFpgss-WlLP~dFP~~~~~~~~~~~~ 163 (486)
.+.+.--||++-|.-| .||+.=-....+.+|=+-||.|.+.+.-+.. -|.++ -..|-.| -|....
T Consensus 24 ~~~DP~GYl~yCPCMGRFGNQaDhFLGsLAFAKaLnRTL~lPpwiEy~------~pe~~n~~vpf~~-------yF~vep 90 (386)
T KOG3849|consen 24 GSWDPAGYLLYCPCMGRFGNQADHFLGSLAFAKALNRTLVLPPWIEYK------HPETKNLMVPFEF-------YFQVEP 90 (386)
T ss_pred CCCCCCccEEEccccccccchHHHHHHHHHHHHHhcccccCCcchhcc------CCcccccccchhh-------eeeccc
Confidence 3456678999998755 9999888888888999999999987654322 11111 1111111 112222
Q ss_pred chhhhhhhhcCCCCCCCCCCCcEEEEEecc-CCCCCCceeecccc--cc-----------------ccCCcCEEEEeecc
Q 039620 164 PHCYGRLLKNNNTMNSNGSSRSFVYLHLVH-DYDDHDKLFFCDED--QS-----------------FLQKVPWLIMKTDN 223 (486)
Q Consensus 164 ~~syg~~l~n~~~~~~~~~~p~~vyl~L~~-~~~~~D~~FfCd~~--q~-----------------~L~~vpWL~~~sd~ 223 (486)
-..|-+++.-. .|+ =+|+- -|....+..||++. |+ +..++ -+-+-.+.
T Consensus 91 l~~YhRVitm~----------dFm-~klapthwp~~~Rva~c~k~a~qr~pdkp~Ch~KeGNPFGPfWDqf-hvsFv~sE 158 (386)
T KOG3849|consen 91 LAKYHRVITMQ----------DFM-KKLAPTHWPGTPRVAICDKSAAQRSPDKPGCHSKEGNPFGPFWDQF-HVSFVGSE 158 (386)
T ss_pred HhhhhhheeHH----------HHH-HHhCcccCCCCcceeeeehhhhccCCCCCCCcccCCCCCCCchhhe-Eeeeeccc
Confidence 22232221100 000 00000 12222334444443 11 11111 23444567
Q ss_pred eeeeecccCcch--HHHHhhcCCCCC-ch---------------hhhhcccccCCCchhhhHHHHHHHHhhccCCceeEE
Q 039620 224 YYIPSLFLIPSF--EQELSNLFPNKD-SV---------------FHFLGRYLFHPTNPVWGLITRYYDAYLARADERIGI 285 (486)
Q Consensus 224 YfvP~LFl~P~f--~~eL~~lFP~k~-~v---------------FhhL~RYLfhPsn~VW~~Itrfy~ayLa~a~~rIGI 285 (486)
||.+.=|-...- ++.-..=||.++ -| --.|-+|| .=+..+-+.-+.|-.+.|++ .-|||
T Consensus 159 ~f~~i~Fd~~~~~~~~kW~~kfp~eeyPVLAf~gAPA~FPv~~e~~~lQkYl-~WS~r~~e~~k~fI~a~L~r--pfvgi 235 (386)
T KOG3849|consen 159 YFGDIGFDLNQMGSRKKWLEKFPSEEYPVLAFSGAPAPFPVKGEVWSLQKYL-RWSSRITEQAKKFISANLAR--PFVGI 235 (386)
T ss_pred cccccccchhhcchHHHHHhhCCcccCceeeecCCCCCCccccccccHHHHH-HHHHHHHHHHHHHHHHhcCc--ceeEE
Confidence 888866643332 122222344443 11 11344452 23344445556677888865 78999
Q ss_pred EEEeecCCCCchHHHHH-------HHHHHHhhhc---------cCCccchh-hhhhcccCC-CceeEEEEecCChhHHHH
Q 039620 286 QIRVFDTGVGPFQYVLD-------QILACTLKEN---------LLPKVDKE-KAIIRQSWN-QTSKAVILTSLSSGYFEK 347 (486)
Q Consensus 286 QIR~f~~~~~~~~~~~~-------qI~~C~~~e~---------lLP~v~~~-~~~~~~~~~-~~~kaVlVtSL~~~y~e~ 347 (486)
+.|...+.-.-.+++-| .--.|.-..+ -+|....- ......-++ ...|+|+|+|++.-|.++
T Consensus 236 HLRng~DWvraCehikd~~~~hlfASpQClGy~~~~gaLt~e~C~Psk~~I~rqik~~v~si~dakSVfVAsDs~hmi~E 315 (386)
T KOG3849|consen 236 HLRNGADWVRACEHIKDTTNRHLFASPQCLGYGHHLGALTKEICSPSKQQILRQIKEKVGSIGDAKSVFVASDSDHMIDE 315 (386)
T ss_pred EeecCchHHHHHHHhcccCCCccccChhhccccccccccchhhhCccHHHHHHHHHHHHhhhcccceEEEeccchhhhHH
Confidence 99986543111122211 0123332111 12211000 000000111 135899999999999999
Q ss_pred HHHHhccCccccccEEEEeCCCchhhhhccchhhhHHHHHHHHHhhccCceeecCCCchhHH
Q 039620 348 MRDMYWEYPTVTGEVIGIYQPSQERYQQTEKRTHNRKAWAEMYLLSLTDVLVTSSWSTFGYV 409 (486)
Q Consensus 348 lr~~Y~~~~t~~Ge~v~V~qPShe~~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS~~STFGYV 409 (486)
|.+..-. ++ |+||.--. ..+-.|.++|.-+|..|---.|||.-.
T Consensus 316 ln~aL~~-----~~-i~vh~l~p------------dd~y~dLaIlGqadhFiGNCvSsfsaf 359 (386)
T KOG3849|consen 316 LNEALKP-----YE-IEVHRLEP------------DDMYTDLAILGQADHFIGNCVSSFSAF 359 (386)
T ss_pred HHHhhcc-----cc-eeEEecCc------------ccchhhhhhhcccchhhhhhHHHHHHH
Confidence 8865432 22 56654222 245679999999999998777777543
No 7
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=38.19 E-value=2.7e+02 Score=27.93 Aligned_cols=124 Identities=11% Similarity=0.070 Sum_probs=70.4
Q ss_pred EeecCCCCchHHHHHHHHHHHhhhccCCccchhhhhhcccCCCceeEEEEecCChhHHHHHHHHhccCccccccEEEEeC
Q 039620 288 RVFDTGVGPFQYVLDQILACTLKENLLPKVDKEKAIIRQSWNQTSKAVILTSLSSGYFEKMRDMYWEYPTVTGEVIGIYQ 367 (486)
Q Consensus 288 R~f~~~~~~~~~~~~qI~~C~~~e~lLP~v~~~~~~~~~~~~~~~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~q 367 (486)
|+++..+.-.++.-+.|+..+.+-+--|+..... ...+..+.++|++.++...|+..+.+--.+.....|-.+-+.
T Consensus 20 rvLn~~~~Vs~~tr~rV~~~a~elgY~pn~~ar~---l~~~~~~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~- 95 (343)
T PRK10727 20 RVINNSPKASEASRLAVHSAMESLSYHPNANARA---LAQQSTETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIG- 95 (343)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHh---hhhCCCCeEEEEeCCCCcchHHHHHHHHHHHHHHcCCEEEEE-
Confidence 3444443345677788999999888878643221 123345678898888877777766654444333344333333
Q ss_pred CCchhhhhccchhhhHHHHHHHHHhhccCceeecCCC-chhHHHHhhcCCcceEee
Q 039620 368 PSQERYQQTEKRTHNRKAWAEMYLLSLTDVLVTSSWS-TFGYVAQSLGGLRPWILY 422 (486)
Q Consensus 368 PShe~~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS~~S-TFGYVAqgLgGl~Pwil~ 422 (486)
.+.+.. ..+....++.+-.-.|.+|..+.. +--.+.+-..|+.|.|+.
T Consensus 96 ~~~~~~-------~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~p~vV~i 144 (343)
T PRK10727 96 NGYHNE-------QKERQAIEQLIRHRCAALVVHAKMIPDAELASLMKQIPGMVLI 144 (343)
T ss_pred eCCCCH-------HHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHhcCCCEEEE
Confidence 222111 123445566566678999887642 223344545566556664
No 8
>PRK09526 lacI lac repressor; Reviewed
Probab=35.30 E-value=2.8e+02 Score=27.67 Aligned_cols=124 Identities=10% Similarity=0.030 Sum_probs=67.2
Q ss_pred eecCCCCchHHHHHHHHHHHhhhccCCccchhhhhhcccCCCceeEEEEecCChhHHHHHHHHhccCccccccEEEEeCC
Q 039620 289 VFDTGVGPFQYVLDQILACTLKENLLPKVDKEKAIIRQSWNQTSKAVILTSLSSGYFEKMRDMYWEYPTVTGEVIGIYQP 368 (486)
Q Consensus 289 ~f~~~~~~~~~~~~qI~~C~~~e~lLP~v~~~~~~~~~~~~~~~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qP 368 (486)
+++..+.-.+..-++|+.++.+-+--|+..... ...+..+.++|++.++...|+..+.+-..+.....|=.+.++..
T Consensus 25 vLn~~~~vs~~tr~rV~~~a~elgY~pn~~a~~---l~~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~i~~~ 101 (342)
T PRK09526 25 VLNQASHVSAKTREKVEAAMAELNYVPNRVAQQ---LAGKQSLTIGLATTSLALHAPSQIAAAIKSRADQLGYSVVISMV 101 (342)
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHCCCcCHHHHH---hhcCCCceEEEEeCCCCcccHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 344433334667778999999888777643211 12334567899998887777666655444444444544555432
Q ss_pred CchhhhhccchhhhHHHHHHHHHhhccCceeec-CCCc--hhHHHHhhcCCcceEeeC
Q 039620 369 SQERYQQTEKRTHNRKAWAEMYLLSLTDVLVTS-SWST--FGYVAQSLGGLRPWILYK 423 (486)
Q Consensus 369 She~~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS-~~ST--FGYVAqgLgGl~Pwil~~ 423 (486)
..+.. ..+....+..+-.-.|.+|.. +... ...+.+-..| .|.|+..
T Consensus 102 ~~~~~-------~~~~~~l~~l~~~~vdGiii~~~~~~~~~~~~~~~~~~-iPvV~~d 151 (342)
T PRK09526 102 ERSGV-------EACQAAVNELLAQRVSGVIINVPLEDADAEKIVADCAD-VPCLFLD 151 (342)
T ss_pred CCChH-------HHHHHHHHHHHhcCCCEEEEecCCCcchHHHHHhhcCC-CCEEEEe
Confidence 22111 112344455555678988874 3211 2233322234 3877753
No 9
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=34.82 E-value=55 Score=32.57 Aligned_cols=47 Identities=26% Similarity=0.392 Sum_probs=38.0
Q ss_pred cEEEEcccCCchhhHHHHHHHHHHHHHhCceeeeCCC--CCccccccCC
Q 039620 92 NYLVWISFSGLGNRILTLASAFLYALLTNRVLLVDPG--VDMVDLFCEP 138 (486)
Q Consensus 92 kYlVw~~~~GLGNRmlslaSaFLYALLT~RVLLVd~~--~d~~~LFCEP 138 (486)
|+++..+-.|-|.-.++.+.|..+|-.-.|||||+-. ..++++|--+
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~sl~~~~~~~ 49 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAHSLSDSFNQE 49 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcccHHHHhCCc
Confidence 5788888899999999999999999999999999733 3455555443
No 10
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=32.22 E-value=1.9e+02 Score=28.86 Aligned_cols=116 Identities=9% Similarity=0.004 Sum_probs=68.6
Q ss_pred chHHHHHHHHHHHhhhccCCccchhhhhhcccCCCceeEEEEecCChhHHHHHHHHhccCccccccEEEEeCCCchhhhh
Q 039620 296 PFQYVLDQILACTLKENLLPKVDKEKAIIRQSWNQTSKAVILTSLSSGYFEKMRDMYWEYPTVTGEVIGIYQPSQERYQQ 375 (486)
Q Consensus 296 ~~~~~~~qI~~C~~~e~lLP~v~~~~~~~~~~~~~~~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShe~~Q~ 375 (486)
-.+..-++|++.+.+.+-.|+.... ....+..+.++|++.++...|+..+..-..+.....|-.+-++. +...
T Consensus 33 vs~~tr~~V~~~a~elgY~p~~~a~---~l~~~~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~~~~~~~-~~~~--- 105 (342)
T PRK10014 33 ISTATGERVNQAIEELGFVRNRQAS---ALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLQ-GGKD--- 105 (342)
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHH---hhccCCCCEEEEEeCCCccchHHHHHHHHHHHHHHcCCEEEEEe-CCCC---
Confidence 3466777899999988888864321 12234456789999888888888887766555555565454442 2211
Q ss_pred ccchhhhHHHHHHHHHhhccCceeecCCC-c-hhHHHHhhcCCcceEee
Q 039620 376 TEKRTHNRKAWAEMYLLSLTDVLVTSSWS-T-FGYVAQSLGGLRPWILY 422 (486)
Q Consensus 376 ~~~~~h~~kAlaEmyLLS~sD~LVtS~~S-T-FGYVAqgLgGl~Pwil~ 422 (486)
...+....+..+-.-.|.+|..+-. . --.+..-...=.|.|+.
T Consensus 106 ----~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~~ 150 (342)
T PRK10014 106 ----GEQLAQRFSTLLNQGVDGVVIAGAAGSSDDLREMAEEKGIPVVFA 150 (342)
T ss_pred ----HHHHHHHHHHHHhCCCCEEEEeCCCCCcHHHHHHHhhcCCCEEEE
Confidence 1223445555555568988877532 1 22333222222388875
No 11
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=30.33 E-value=4.1e+02 Score=26.66 Aligned_cols=116 Identities=10% Similarity=0.076 Sum_probs=66.6
Q ss_pred chHHHHHHHHHHHhhhccCCccchhhhhhcccCCCceeEEEEecCChhHHHHHHHHhccCccccccEEEEeCCCchhhhh
Q 039620 296 PFQYVLDQILACTLKENLLPKVDKEKAIIRQSWNQTSKAVILTSLSSGYFEKMRDMYWEYPTVTGEVIGIYQPSQERYQQ 375 (486)
Q Consensus 296 ~~~~~~~qI~~C~~~e~lLP~v~~~~~~~~~~~~~~~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShe~~Q~ 375 (486)
-.++.-+.|+..+.+-+--|+..... ...+..+.++|++..+...|+..+.+-..+.....|-.+-+. .+.+..
T Consensus 28 Vs~~tr~kV~~~a~elgY~pn~~a~~---l~~~~~~~Igvi~~~~~~~f~~~l~~gi~~~~~~~gy~~~~~-~~~~~~-- 101 (346)
T PRK10401 28 VSADTREAVMKAVSELGYRPNANAQA---LATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIG-NSYHEA-- 101 (346)
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHH---hhcCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEEE-cCCCCh--
Confidence 34667778999998888777643211 123344678998888777788777655444444445334343 222111
Q ss_pred ccchhhhHHHHHHHHHhhccCceeecCCC-chhHHHHhhcCCcceEee
Q 039620 376 TEKRTHNRKAWAEMYLLSLTDVLVTSSWS-TFGYVAQSLGGLRPWILY 422 (486)
Q Consensus 376 ~~~~~h~~kAlaEmyLLS~sD~LVtS~~S-TFGYVAqgLgGl~Pwil~ 422 (486)
..++...++.+-...|.+|..+.. .--.+..-+..+.|.|+.
T Consensus 102 -----~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~~~~~~p~vV~i 144 (346)
T PRK10401 102 -----EKERHAIEVLIRQRCNALIVHSKALSDDELAQFMDQIPGMVLI 144 (346)
T ss_pred -----HHHHHHHHHHHhcCCCEEEEeCCCCChHHHHHHHhcCCCEEEE
Confidence 123445555555679988887643 223344445555456654
No 12
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=29.14 E-value=5.8e+02 Score=26.32 Aligned_cols=126 Identities=10% Similarity=0.110 Sum_probs=80.0
Q ss_pred EeecCCCCchHHHHHHHHHHHhhhccCCccchhhhhhcccCCCceeEEEEecCChhHHHHHHHHhccCccccccEEEEeC
Q 039620 288 RVFDTGVGPFQYVLDQILACTLKENLLPKVDKEKAIIRQSWNQTSKAVILTSLSSGYFEKMRDMYWEYPTVTGEVIGIYQ 367 (486)
Q Consensus 288 R~f~~~~~~~~~~~~qI~~C~~~e~lLP~v~~~~~~~~~~~~~~~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~q 367 (486)
|+++..+.-.++.-+.|++-+.+-+--|+..... ..++..+.++|++.+....|+-.+-.--.+.....|-.+-+..
T Consensus 19 rvln~~~~Vs~eTr~kV~~a~~elgY~pN~~Ar~---L~~~~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~gy~~~l~~ 95 (333)
T COG1609 19 RVLNGSPYVSEETREKVLAAIKELGYRPNAVARS---LRTGRTKTIGLVVPDITNPFFAEILKGIEEAAREAGYSLLLAN 95 (333)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHHCCCCCHHHHH---HHhCCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEC
Confidence 4455544445677788888888888888754322 2234566789999888877776666555555555665555543
Q ss_pred CCchhhhhccchhhhHHHHHHHHHhhccCceeecC-CCchhHHHHhhcCCcceEeeCC
Q 039620 368 PSQERYQQTEKRTHNRKAWAEMYLLSLTDVLVTSS-WSTFGYVAQSLGGLRPWILYKP 424 (486)
Q Consensus 368 PShe~~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS~-~STFGYVAqgLgGl~Pwil~~~ 424 (486)
-.. . ...++...++.+-...|-+|.++ .++--.+..-...=.|.|+...
T Consensus 96 ~~~-~-------~~~e~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~~P~V~i~~ 145 (333)
T COG1609 96 TDD-D-------PEKEREYLETLLQKRVDGLILLGERPNDSLLELLAAAGIPVVVIDR 145 (333)
T ss_pred CCC-C-------HHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHhcCCCEEEEeC
Confidence 222 1 12467888999999999999999 4444344333333468887543
No 13
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=27.57 E-value=70 Score=33.02 Aligned_cols=48 Identities=27% Similarity=0.394 Sum_probs=39.4
Q ss_pred cEEEEcccCCchhhHHHHHHHHHHHHHhCceeee--CCCCCccccccCCC
Q 039620 92 NYLVWISFSGLGNRILTLASAFLYALLTNRVLLV--DPGVDMVDLFCEPF 139 (486)
Q Consensus 92 kYlVw~~~~GLGNRmlslaSaFLYALLT~RVLLV--d~~~d~~~LFCEPF 139 (486)
|+|++.+-.|-|.--+|.+.|.-+|---.||||| |+...++++|.-..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~l~~~~ 51 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDVLGQKL 51 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHHHTS--
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHHhCCcC
Confidence 6888999999999999999999999877899999 56667888886654
No 14
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=26.55 E-value=30 Score=33.76 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=39.4
Q ss_pred HHHHHHhhccCceeecCCCchhHHHHhh-----------cCCcceEeeCCCCCCCCCCCcccCCC
Q 039620 386 WAEMYLLSLTDVLVTSSWSTFGYVAQSL-----------GGLRPWILYKPENHTAPDPPCHRAMS 439 (486)
Q Consensus 386 laEmyLLS~sD~LVtS~~STFGYVAqgL-----------gGl~Pwil~~~~~~~~~~ppC~r~~S 439 (486)
-+..||.|.||.++.++-+.||-++-.. -||++-++...+.....+|-....+|
T Consensus 90 sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s 154 (222)
T cd07018 90 QGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMS 154 (222)
T ss_pred chhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCC
Confidence 3678999999999999999998875332 28999988766665555555444443
No 15
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=25.66 E-value=2.9e+02 Score=27.38 Aligned_cols=103 Identities=14% Similarity=0.095 Sum_probs=61.6
Q ss_pred eecCCCCchHHHHHHHHHHHhhhccCCccchhhhhhcccCCCceeEEEEecCChhHHHHHHHHhccCccccccEEEEeCC
Q 039620 289 VFDTGVGPFQYVLDQILACTLKENLLPKVDKEKAIIRQSWNQTSKAVILTSLSSGYFEKMRDMYWEYPTVTGEVIGIYQP 368 (486)
Q Consensus 289 ~f~~~~~~~~~~~~qI~~C~~~e~lLP~v~~~~~~~~~~~~~~~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qP 368 (486)
+++..+.-.++.-+.|++++.+-+--|+..... ...+..+.++|++.++...|+..+.+-..+.....|-.+.++..
T Consensus 21 vLn~~~~vs~~tr~rV~~~a~~lgY~pn~~a~~---l~~~~~~~Igvv~~~~~~~f~~~l~~~i~~~~~~~g~~~~i~~~ 97 (329)
T TIGR01481 21 VVNGNPNVKPATRKKVLEVIKRLDYRPNAVARG---LASKRTTTVGVIIPDISNIYYAELARGIEDIATMYKYNIILSNS 97 (329)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHH---HhhCCCCEEEEEeCCCCchhHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 344433344677788999999988888753221 12234567899998887788877765544444444544444422
Q ss_pred CchhhhhccchhhhHHHHHHHHHhhccCceeecC
Q 039620 369 SQERYQQTEKRTHNRKAWAEMYLLSLTDVLVTSS 402 (486)
Q Consensus 369 She~~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS~ 402 (486)
.+. ...++...++.+-.-.|-+|..+
T Consensus 98 -~~~-------~~~~~~~~~~l~~~~vdGiIi~~ 123 (329)
T TIGR01481 98 -DED-------PEKEVQVLNTLLSKQVDGIIFMG 123 (329)
T ss_pred -CCC-------HHHHHHHHHHHHhCCCCEEEEeC
Confidence 111 12245556665556789888754
No 16
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=23.38 E-value=54 Score=31.62 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=35.4
Q ss_pred HHHHHhhccCceeecCCCchhHHH---Hhh--------cCCcceEeeCCCCCCCCCCC
Q 039620 387 AEMYLLSLTDVLVTSSWSTFGYVA---QSL--------GGLRPWILYKPENHTAPDPP 433 (486)
Q Consensus 387 aEmyLLS~sD~LVtS~~STFGYVA---qgL--------gGl~Pwil~~~~~~~~~~pp 433 (486)
+-.||.+.||.++.++-+.||-++ +++ -|+++.++...+.....+|-
T Consensus 75 ~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~ 132 (207)
T TIGR00706 75 GGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPT 132 (207)
T ss_pred HHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCC
Confidence 678999999999999999887644 333 48999999666555455553
No 17
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=23.20 E-value=6.4e+02 Score=24.91 Aligned_cols=115 Identities=13% Similarity=0.172 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHhhhccCCccchhhhhhcccCCCceeEEEEecCChhHHHHHHHHhccCccccccEEEEeCCCchhhhhc
Q 039620 297 FQYVLDQILACTLKENLLPKVDKEKAIIRQSWNQTSKAVILTSLSSGYFEKMRDMYWEYPTVTGEVIGIYQPSQERYQQT 376 (486)
Q Consensus 297 ~~~~~~qI~~C~~~e~lLP~v~~~~~~~~~~~~~~~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShe~~Q~~ 376 (486)
.++.-+.|++.+.+-+--|+..... ...+..+.++|++.++...|+..+.+-..+.....|=.+.++.- .+.
T Consensus 30 s~~tr~rV~~~a~~lgY~pn~~a~~---l~~~~~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy~~~i~~~-~~~---- 101 (327)
T TIGR02417 30 SQETVERVMAVVREQGYQPNIHAAS---LRAGRSRTIGLVIPDLENYSYARIAKELEQQCREAGYQLLIACS-DDN---- 101 (327)
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHH---hhcCCCceEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEEEeC-CCC----
Confidence 3566778888888888778643221 12234467899998887778877776655544445544545432 211
Q ss_pred cchhhhHHHHHHHHHhhccCceeecCCCc--hhHHHHhh-cCCcceEeeC
Q 039620 377 EKRTHNRKAWAEMYLLSLTDVLVTSSWST--FGYVAQSL-GGLRPWILYK 423 (486)
Q Consensus 377 ~~~~h~~kAlaEmyLLS~sD~LVtS~~ST--FGYVAqgL-gGl~Pwil~~ 423 (486)
...+++..++.+-.-.|.+|..+.+. .-.+.+-. .| .|.|+..
T Consensus 102 ---~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~-iPvV~~~ 147 (327)
T TIGR02417 102 ---PDQEKVVIENLLARQVDALIVASCMPPEDAYYQKLQNEG-LPVVALD 147 (327)
T ss_pred ---HHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHHHhcC-CCEEEEc
Confidence 12244556665666789988876542 23443322 23 4888754
No 18
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=23.16 E-value=1.5e+02 Score=29.25 Aligned_cols=56 Identities=25% Similarity=0.272 Sum_probs=39.8
Q ss_pred HHHHHHHhhcCC--CCCCCCccEEEEcc-cCCchhhHHHHHHHHHHHHHhCceeeeCCC
Q 039620 73 YNKTLQKLKSGN--QPESSDCNYLVWIS-FSGLGNRILTLASAFLYALLTNRVLLVDPG 128 (486)
Q Consensus 73 y~~a~~~l~s~~--~~~~~~CkYlVw~~-~~GLGNRmlslaSaFLYALLT~RVLLVd~~ 128 (486)
|.++++.|++.- .....++|-|+.++ ..|-|-=.+++--|..+|-.-.||||||..
T Consensus 83 ~~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 83 QVEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred HHHHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 555556665532 12234566655554 689999999998889999989999999964
No 19
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=21.33 E-value=67 Score=30.81 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=34.3
Q ss_pred HHHHHHhhccCceeecCCCchhHHHHhh-----------cCCcceEeeCCCCCCCCCC
Q 039620 386 WAEMYLLSLTDVLVTSSWSTFGYVAQSL-----------GGLRPWILYKPENHTAPDP 432 (486)
Q Consensus 386 laEmyLLS~sD~LVtS~~STFGYVAqgL-----------gGl~Pwil~~~~~~~~~~p 432 (486)
=+-.+|.+.||.++.++-|+||-++-.. -|+++.++...+..+..+|
T Consensus 79 s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~ 136 (208)
T cd07023 79 SGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSP 136 (208)
T ss_pred hHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCC
Confidence 3567999999999999999987653221 3788988866655555555
No 20
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=21.22 E-value=4.2e+02 Score=26.18 Aligned_cols=115 Identities=16% Similarity=0.166 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHhhhccCCccchhhhhhcccCCCceeEEEEecCChhHHHHHHHHhccCccccccEEEEeCCCchhhhhc
Q 039620 297 FQYVLDQILACTLKENLLPKVDKEKAIIRQSWNQTSKAVILTSLSSGYFEKMRDMYWEYPTVTGEVIGIYQPSQERYQQT 376 (486)
Q Consensus 297 ~~~~~~qI~~C~~~e~lLP~v~~~~~~~~~~~~~~~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShe~~Q~~ 376 (486)
.++.-+.|++.+.+-+-.|+..... ...+..+.++|++..+...|+..+.+-..+.....|=.+.+... .++.
T Consensus 31 s~~tr~rV~~~a~elgY~pn~~a~~---l~~~~~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~~~~~~~~-~~~~--- 103 (328)
T PRK11303 31 SDKTVEKVMAVVREHNYHPNAVAAG---LRAGRTRSIGLIIPDLENTSYARIAKYLERQARQRGYQLLIACS-DDQP--- 103 (328)
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHH---hhcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC-CCCH---
Confidence 4667778999999888888643221 12334567888888777778877766554444444544444432 2211
Q ss_pred cchhhhHHHHHHHHHhhccCceeecCCCch--hHHHHhh-cCCcceEeeC
Q 039620 377 EKRTHNRKAWAEMYLLSLTDVLVTSSWSTF--GYVAQSL-GGLRPWILYK 423 (486)
Q Consensus 377 ~~~~h~~kAlaEmyLLS~sD~LVtS~~STF--GYVAqgL-gGl~Pwil~~ 423 (486)
..++...++.+-.-.|.+|..+...- -++.+-. .| .|.|+..
T Consensus 104 ----~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~-iPvV~v~ 148 (328)
T PRK11303 104 ----DNEMRCAEHLLQRQVDALIVSTSLPPEHPFYQRLQNDG-LPIIALD 148 (328)
T ss_pred ----HHHHHHHHHHHHcCCCEEEEcCCCCCChHHHHHHHhcC-CCEEEEC
Confidence 22455666666667899888654321 2232221 34 4887753
Done!