Query 039620
Match_columns 486
No_of_seqs 137 out of 168
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 19:52:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039620.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039620hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hhc_A NODZ, nodulation fucosy 100.0 1.1E-41 3.9E-46 341.2 9.6 280 89-418 2-301 (330)
2 2de0_X Alpha-(1,6)-fucosyltran 99.6 9E-15 3.1E-19 156.9 20.7 204 249-477 265-481 (526)
3 3zy2_A Putative GDP-fucose pro 98.0 8.7E-06 3E-10 83.5 7.1 146 243-411 178-341 (362)
4 4ap5_A GDP-fucose protein O-fu 97.1 0.022 7.7E-07 58.5 18.9 68 332-410 304-372 (408)
5 1qpz_A PURA, protein (purine n 27.7 2.6E+02 0.0088 26.4 9.3 114 297-422 28-144 (340)
6 3kjx_A Transcriptional regulat 23.9 2.3E+02 0.0079 26.8 8.2 121 290-422 31-153 (344)
7 3dbi_A Sugar-binding transcrip 18.5 2E+02 0.0068 27.1 6.4 114 298-423 32-150 (338)
8 3jy6_A Transcriptional regulat 17.1 5.3E+02 0.018 23.1 8.8 88 327-423 4-92 (276)
9 2cpd_A Apobec-1 stimulating pr 16.7 1.8E+02 0.0061 22.6 4.8 58 330-389 13-71 (99)
10 1j26_A Immature colon carcinom 16.5 2.5E+02 0.0087 24.0 5.9 59 329-390 38-103 (112)
No 1
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=100.00 E-value=1.1e-41 Score=341.18 Aligned_cols=280 Identities=18% Similarity=0.154 Sum_probs=195.8
Q ss_pred CCccEEEEcccCCchhhHHHHHHHHHHHHHhCceeeeCCCCCccccccCCCCCCccccCCCCCccccccCCCCCCchhhh
Q 039620 89 SDCNYLVWISFSGLGNRILTLASAFLYALLTNRVLLVDPGVDMVDLFCEPFPEVSWFLPSDFPLKTQFDSFDQISPHCYG 168 (486)
Q Consensus 89 ~~CkYlVw~~~~GLGNRmlslaSaFLYALLT~RVLLVd~~~d~~~LFCEPFpgssWlLP~dFP~~~~~~~~~~~~~~syg 168 (486)
+.||||||....||||||+++||||+||++|+|+|+||+.+ ++||+ .|+++|+ |.+||... ++++
T Consensus 2 ~~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~---~~y~~-~~~~~~f-p~~F~~v~----------~~~~ 66 (330)
T 2hhc_A 2 TKERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG---SCYVE-QPFSNAF-PAFFEPVE----------DIAG 66 (330)
T ss_dssp CCCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT---CTTCS-STTSBSH-HHHBCCCS----------EETT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC---cccCC-CCccccC-cccccchh----------hhcc
Confidence 46999999999999999999999999999999999999987 57996 5678887 88887211 2233
Q ss_pred hhhhcC-CCCCCC--C-CCCcEEEEEeccCCCCCCceeeccccccc------cCCcCEEEEeecceeeeecccCcchHHH
Q 039620 169 RLLKNN-NTMNSN--G-SSRSFVYLHLVHDYDDHDKLFFCDEDQSF------LQKVPWLIMKTDNYYIPSLFLIPSFEQE 238 (486)
Q Consensus 169 ~~l~n~-~~~~~~--~-~~p~~vyl~L~~~~~~~D~~FfCd~~q~~------L~~vpWL~~~sd~YfvP~LFl~P~f~~e 238 (486)
+++..+ .++... . .+|+ +|.++.. +.++|++.|-. ..-+.|....++.|+++++++++.|+++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~p~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~w~~~~~ 139 (330)
T 2hhc_A 67 VPVICDDRVNQLSFPGPFFPR-WWNRPSI------DCINRPDEQIFRERDELTELFQAREDSEANTIVCDACLMWRCSEE 139 (330)
T ss_dssp EEEECSGGGGTCCCCSSEESG-GGGSCGG------GGSCCCHHHHHHHHHHHHHHHHSSSCCSCSEEEECSCCTTSSCHH
T ss_pred cceecccccccccCCCCcCch-hhhcccc------ccccChHHhhhhhhhhhhhhhhhhhccCCCeEEcccccccchhhh
Confidence 332211 111111 0 1222 2222211 35788766442 2223454444568999999999998886
Q ss_pred HhhcCCCCCchhhhhcccccCCCchhhhHHHHHHHHhhccCCceeEEEEEeecCCCCc--------hHHHHHHHHHHHhh
Q 039620 239 LSNLFPNKDSVFHFLGRYLFHPTNPVWGLITRYYDAYLARADERIGIQIRVFDTGVGP--------FQYVLDQILACTLK 310 (486)
Q Consensus 239 L~~lFP~k~~vFhhL~RYLfhPsn~VW~~Itrfy~ayLa~a~~rIGIQIR~f~~~~~~--------~~~~~~qI~~C~~~ 310 (486)
. ++.+| ||| +|++.||+.|++|+++++++ +..||||||.++..... ....++++.+|+.+
T Consensus 140 ~------~~~i~----~yl-~p~~~i~~~i~~~~~~~~~~-~~~VGVHIRrgD~~~~~~~~~~~~~~~~~l~~~~~~i~~ 207 (330)
T 2hhc_A 140 A------ERLIF----RNI-KLRSEIRARIDALYEEHFSG-HSIIGVHVRHGNGEDIMEHAPYWADSELALHQVCMAIRK 207 (330)
T ss_dssp H------HHHHH----HHS-CBCHHHHHHHHHHHHHHTTT-SEEEEEEECC------------CHHHHHHHHHHHHHHHH
T ss_pred h------HHHHH----hcC-CccHHHHHHHHHHHHHhccC-CceEEEEEecCCCCcccccCcchHHHhHHHHHHHHHHHH
Confidence 3 33344 998 99999999999999999875 78999999999854322 12238899999998
Q ss_pred hccCCccchhhhhhcccCCCceeEEEEecCChhHHHHHHHHhccCccccccEEEEe-CCCchhhhhccchhhhHHHHHHH
Q 039620 311 ENLLPKVDKEKAIIRQSWNQTSKAVILTSLSSGYFEKMRDMYWEYPTVTGEVIGIY-QPSQERYQQTEKRTHNRKAWAEM 389 (486)
Q Consensus 311 e~lLP~v~~~~~~~~~~~~~~~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~-qPShe~~Q~~~~~~h~~kAlaEm 389 (486)
.+.+++. +.++|||+|+.+++.+++|++|++..+.+++.+... ++.|.. ..+..+.++|++||
T Consensus 208 ~~~~~~~-------------~~~~vfvaSDd~~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~---~~~~~~~~~~~~Dm 271 (330)
T 2hhc_A 208 AKALSYP-------------KPVKVFLCTDSAQVLDQVSGLFPDVFAVPKRFQADRAGPLHSA---EMGIEGGASALIDM 271 (330)
T ss_dssp HHTSCCS-------------SCEEEEEEESCHHHHHHHHHHSTTEECCCC-----------CH---HHHHHHHHHHHHHH
T ss_pred HHhccCc-------------CceEEEEEeCCHHHHHHHHHHcCCcccccceeecccccccccC---chhhccchHHHHHH
Confidence 8777642 348999999999999999999998666555432111 222221 12345789999999
Q ss_pred HHhhccCcee-ecCCCchhHHHHhhcCCcc
Q 039620 390 YLLSLTDVLV-TSSWSTFGYVAQSLGGLRP 418 (486)
Q Consensus 390 yLLS~sD~LV-tS~~STFGYVAqgLgGl~P 418 (486)
||||.||.+| |+++||||++|+.|+.-.+
T Consensus 272 ~LLS~cd~~I~~~~~STFs~~aa~l~~~~~ 301 (330)
T 2hhc_A 272 YLLARCATVIRFPPTSAFTRYARLLVPRII 301 (330)
T ss_dssp HHHTTCSEEEEESTTCGGGHHHHHHCSEEE
T ss_pred HHHHcCCeeEECCCCCCHHHHHHHhCCccc
Confidence 9999999999 8889999999998875443
No 2
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=99.63 E-value=9e-15 Score=156.93 Aligned_cols=204 Identities=15% Similarity=0.110 Sum_probs=124.2
Q ss_pred hhhhhcccccCCCchhhhHHHHHHHHhhccCCceeEEEEEeecCCC-----CchHHHHHHH---HHHHhhhccCCccchh
Q 039620 249 VFHFLGRYLFHPTNPVWGLITRYYDAYLARADERIGIQIRVFDTGV-----GPFQYVLDQI---LACTLKENLLPKVDKE 320 (486)
Q Consensus 249 vFhhL~RYLfhPsn~VW~~Itrfy~ayLa~a~~rIGIQIR~f~~~~-----~~~~~~~~qI---~~C~~~e~lLP~v~~~ 320 (486)
.+.++.+|||+|++.+...|.+++... ...+..||||||..|..+ .+.++.++.+ +....++
T Consensus 265 ~~~q~~~yl~rP~~~i~~~I~~~~~~l-~~~~piVGVHIRrGDk~~~E~~~~~~~~Y~~~v~~~~~~l~~~--------- 334 (526)
T 2de0_X 265 WVSQFVKYLIRPQPWLEKEIEEATKKL-GFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARR--------- 334 (526)
T ss_dssp HHHHHHHHHTCBCHHHHHHHHHHHHHH-TCCSSEEEEEECCC-----CCCSCSHHHHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh-CCCCCEEEEEEeCCCCCccccccCCHHHHHHHHHHHHHHHHhh---------
Confidence 478999999999999999999999874 225678999999988721 2444555433 2222110
Q ss_pred hhhhcccCCCceeEEEEecCChhHHHHHHHHhccCccccccEEEEeCCCchhhhhccchhhhHHHHHHHHHhhccCceee
Q 039620 321 KAIIRQSWNQTSKAVILTSLSSGYFEKMRDMYWEYPTVTGEVIGIYQPSQERYQQTEKRTHNRKAWAEMYLLSLTDVLVT 400 (486)
Q Consensus 321 ~~~~~~~~~~~~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShe~~Q~~~~~~h~~kAlaEmyLLS~sD~LVt 400 (486)
...+.+.|||+|+.+..++.++++|.+..-. +... + .-+.....+.. ...-..+++||||||-||++|.
T Consensus 335 -------~~~~~~~ifLATDDp~v~~e~k~~~p~~~~~-~d~~-~-~~~a~~~~R~s-~~~l~~~l~DL~lLs~cd~~Vg 403 (526)
T 2de0_X 335 -------MQVDKKRVYLATDDPSLLKEAKTKYPNYEFI-SDNS-I-SWSAGLHNRYT-ENSLRGVILDIHFLSQADFLVC 403 (526)
T ss_dssp -------SCCSSCEEEEEESCHHHHHHHHHHCTTSEEE-CCCC-S-SCSSGGGGGTC-CTHHHHHHHHHHHHHHSSEEEE
T ss_pred -------cCCCCCeEEEEcCCHHHHHHHHHhCCCCEEe-cCcc-c-ccccCcccccc-HHHHHHHHHHHHHHhcCCeeec
Confidence 1234579999999999999999999765211 1110 1 11111112221 1123689999999999999999
Q ss_pred cCCCchhHHHHhhcCCcceEeeCCCCCCCCCCCcccCCCCCCCCCCCCCCccCcCC----CCCCCcccccccccCCccC-
Q 039620 401 SSWSTFGYVAQSLGGLRPWILYKPENHTAPDPPCHRAMSMEPCFHAPPFYDCKAKR----GIDTGVLVPHVRHCEDMSW- 475 (486)
Q Consensus 401 S~~STFGYVAqgLgGl~Pwil~~~~~~~~~~ppC~r~~S~EPCfh~pp~~~C~~~~----~~d~~~~~p~vr~CeD~~~- 475 (486)
|..|||+.+|..+.|-..-.- .....+..+...+.+++.+.| .+ -|+-.+.. .-..|.++--+..|+|-+|
T Consensus 404 t~sS~~srla~~l~~~~~~~~-~~~~~SLD~~~~~~Gq~~~~~--~a-ly~y~a~~~dELs~~~GD~i~v~~~~~~gW~~ 479 (526)
T 2de0_X 404 TFSSQVCRVAYEIMQTLHPDA-SANFHSLDDIYYFGGQNAHNQ--IA-IYAHQPRTADEIPMEPGDIIGVAGNHWDGYSK 479 (526)
T ss_dssp CTTSHHHHHHHHHHTTSSSCC-TTCEEESSCCSCCTTCCCCEE--EE-CSCBCCSSTTBCCBCTTCEEEEEEECSSSEEE
T ss_pred CCCCHHHHHHHHHhcCcCccc-cccccCCccccccccccccce--EE-eecCCCCCCCcCCcCCCCEEEEccccCCCeeE
Confidence 999999999999887654110 000001122333334433222 11 23333322 2355666656677877766
Q ss_pred Ce
Q 039620 476 GL 477 (486)
Q Consensus 476 Gl 477 (486)
|-
T Consensus 480 G~ 481 (526)
T 2de0_X 480 GV 481 (526)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 3
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=97.98 E-value=8.7e-06 Score=83.47 Aligned_cols=146 Identities=16% Similarity=0.224 Sum_probs=95.9
Q ss_pred CCCCCchhhhhcccccCCCchhhhHHHHHHHHhhccCCceeEEEEEee-cCC-------CCchHHHHHHHHHHH--hhhc
Q 039620 243 FPNKDSVFHFLGRYLFHPTNPVWGLITRYYDAYLARADERIGIQIRVF-DTG-------VGPFQYVLDQILACT--LKEN 312 (486)
Q Consensus 243 FP~k~~vFhhL~RYLfhPsn~VW~~Itrfy~ayLa~a~~rIGIQIR~f-~~~-------~~~~~~~~~qI~~C~--~~e~ 312 (486)
||-+. --.+|.|| +..++.+-...++|-+++|.+ .-|||++|.. |++ .....+++.. -+|. ..++
T Consensus 178 FPv~~-e~r~LqkY-m~WS~~i~~~a~~fI~~~L~r--pyVgIHLR~G~DW~~aC~hlk~~~~~~lfaS-PQC~Gy~~~~ 252 (362)
T 3zy2_A 178 FPSKG-KVWSIQKY-LRWSSRITEQAKKFISANLAK--PFVAVHLRNDADWVRVCEHIDTTTNRPLFAS-EQCLGEGHHL 252 (362)
T ss_dssp SSCCG-GGGGGGGG-CCBCHHHHHHHHHHHHHHCCS--SEEEEEECCCHHHHHHHHTCCTTTCCCCTTT-HHHHCGGGTT
T ss_pred CCcCh-hhHhHHHh-ccccHHHHHHHHHHHHHhcCC--CeEEEEEecCCcHHHHHhhhccccCcccccC-CcccCCcccC
Confidence 66664 46788888 899999999999999999975 8999999996 221 0000011110 2355 1122
Q ss_pred c-------CCccchhhhhh-cccCCCceeEEEEecCChhHHHHHHHHhccCccccccEEEEeCCCchhhhhccchhhhHH
Q 039620 313 L-------LPKVDKEKAII-RQSWNQTSKAVILTSLSSGYFEKMRDMYWEYPTVTGEVIGIYQPSQERYQQTEKRTHNRK 384 (486)
Q Consensus 313 l-------LP~v~~~~~~~-~~~~~~~~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShe~~Q~~~~~~h~~k 384 (486)
. +|.+....... ...++.+.++|+|+|+...+.++|++.+..... ++| -++|. .
T Consensus 253 ~~lt~emClPSle~I~rqIk~~vk~~~lksVFIATDa~~~~~ELk~~L~~~~v---~vv-~~~pe--------------~ 314 (362)
T 3zy2_A 253 GTLTKEICSPSKQQILEQIVEKVGSIGAKSVFVASDKDHMIDEINEALKPYEI---EAH-RQEPD--------------D 314 (362)
T ss_dssp CCCCHHHHSCCHHHHHHHHHHHHHHHTCSEEEEEESSCCCHHHHHHHHGGGTC---CEE-CCSSC--------------C
T ss_pred cccchhccCCCHHHHHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHHhhccCc---eEE-EeCCc--------------h
Confidence 1 45442211110 011122568999999999999999998853211 111 12222 7
Q ss_pred HHHHHHHhhccCceeecCCCchhHHHH
Q 039620 385 AWAEMYLLSLTDVLVTSSWSTFGYVAQ 411 (486)
Q Consensus 385 AlaEmyLLS~sD~LVtS~~STFGYVAq 411 (486)
|.+|||+|+.+|+.|-+..|||.+-.+
T Consensus 315 a~ID~~I~~~A~~FIGN~~SSFSa~I~ 341 (362)
T 3zy2_A 315 MYTSLAIMGRADLFVGNCVSTFSHIVK 341 (362)
T ss_dssp HHHHHHHHHHSSEEEECTTCHHHHHHH
T ss_pred hHHHHHHHHhCCEeecCccccccHHHH
Confidence 899999999999999999999998653
No 4
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=97.13 E-value=0.022 Score=58.49 Aligned_cols=68 Identities=15% Similarity=0.267 Sum_probs=50.2
Q ss_pred eeEEEEecCChhH-HHHHHHHhccCccccccEEEEeCCCchhhhhccchhhhHHHHHHHHHhhccCceeecCCCchhHHH
Q 039620 332 SKAVILTSLSSGY-FEKMRDMYWEYPTVTGEVIGIYQPSQERYQQTEKRTHNRKAWAEMYLLSLTDVLVTSSWSTFGYVA 410 (486)
Q Consensus 332 ~kaVlVtSL~~~y-~e~lr~~Y~~~~t~~Ge~v~V~qPShe~~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS~~STFGYVA 410 (486)
.+.|+|||+.... .+.|++.... +..+.|..++....++ +.-|++|+++++.+|+.|-|..|||-.--
T Consensus 304 ~~~VyiATD~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~d---~~~a~idq~Ic~~a~~FiGt~~StfS~~I 372 (408)
T 4ap5_A 304 LDKVFVATDAVRKEYEELKKLLPE--------MVRFEPTWEELELYKD---GGVAIIDQWICAHARFFIGTSVSTFSFRI 372 (408)
T ss_dssp CSCEEEEECCCHHHHHHHHHHCTT--------EECCCCCHHHHHHHHH---HHHHHHHHHHHHTEEEEEBCTTCHHHHHH
T ss_pred CCEEEEeCCCchhHHHHHHHhCCC--------cEEecCcchhhhccCc---chhhHHHHHHHHhCCeeEeCCcCchhHHH
Confidence 3689999996543 6778877642 2345666665554433 35699999999999999999999998654
No 5
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=27.71 E-value=2.6e+02 Score=26.38 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHhhhccCCccchhhhhhcccCCCceeEEEEecCChhHHHHHHHHhccCccccccEEEEeCCCchhhhhc
Q 039620 297 FQYVLDQILACTLKENLLPKVDKEKAIIRQSWNQTSKAVILTSLSSGYFEKMRDMYWEYPTVTGEVIGIYQPSQERYQQT 376 (486)
Q Consensus 297 ~~~~~~qI~~C~~~e~lLP~v~~~~~~~~~~~~~~~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShe~~Q~~ 376 (486)
.++.-+.|+..+.+-+--|+..... ...+..+.++|++......|+..+.+-..+.....|-.+.+... .+
T Consensus 28 s~~tr~rV~~~a~~lgY~pn~~ar~---l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~----- 98 (340)
T 1qpz_A 28 AEETRNAVWAAIKELHYSPSAVARS---LKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNA-WN----- 98 (340)
T ss_dssp CHHHHHHHHHHHHHHTCCCCHHHHH---HHHTCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC-TT-----
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHh---hccCCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEeC-CC-----
Confidence 4566678888888877777643221 12244567899998887778777665554444444544444332 21
Q ss_pred cchhhhHHHHHHHHHhhccCceeecCCCchhHHHHh---hcCCcceEee
Q 039620 377 EKRTHNRKAWAEMYLLSLTDVLVTSSWSTFGYVAQS---LGGLRPWILY 422 (486)
Q Consensus 377 ~~~~h~~kAlaEmyLLS~sD~LVtS~~STFGYVAqg---LgGl~Pwil~ 422 (486)
....+....+..+-.-.|.+|..+...-.-+..- ..|+ |.|+.
T Consensus 99 --~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~~~~i-PvV~~ 144 (340)
T 1qpz_A 99 --NLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHI-PMVVM 144 (340)
T ss_dssp --CHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHTTTTS-CEEEE
T ss_pred --CHHHHHHHHHHHHcCCCCEEEEeCCCCChHHHHHHHhhCCC-CEEEE
Confidence 1123455667666678999998765422212222 2454 87775
No 6
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=23.86 E-value=2.3e+02 Score=26.76 Aligned_cols=121 Identities=13% Similarity=-0.044 Sum_probs=71.5
Q ss_pred ecCCCCchHHHHHHHHHHHhhhccCCccchhhhhhcccCCCceeEEEEecCChhHHHHHHHHhccCccccccEEEEeCCC
Q 039620 290 FDTGVGPFQYVLDQILACTLKENLLPKVDKEKAIIRQSWNQTSKAVILTSLSSGYFEKMRDMYWEYPTVTGEVIGIYQPS 369 (486)
Q Consensus 290 f~~~~~~~~~~~~qI~~C~~~e~lLP~v~~~~~~~~~~~~~~~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPS 369 (486)
++..+.-.+..-+.|+..+.+-+--|+.... ....+..+.++|++.++...|+..+.+-..+.....|-.+.+....
T Consensus 31 Ln~~~~vs~~tr~rV~~~~~~lgY~pn~~a~---~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 107 (344)
T 3kjx_A 31 LRNRGDVSDATRARVLAAAKELGYVPNKIAG---ALASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTD 107 (344)
T ss_dssp HTTCSCCCHHHHHHHHHHHHHHTCCCCCCCS---CSTTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECT
T ss_pred HcCCCCCCHHHHHHHHHHHHHhCCCCCHHHH---HhhcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3333333456677888888888877764321 1123345678999998888787777666655555556545454322
Q ss_pred chhhhhccchhhhHHHHHHHHHhhccCceeecCCCch-hHHHHhh-cCCcceEee
Q 039620 370 QERYQQTEKRTHNRKAWAEMYLLSLTDVLVTSSWSTF-GYVAQSL-GGLRPWILY 422 (486)
Q Consensus 370 he~~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS~~STF-GYVAqgL-gGl~Pwil~ 422 (486)
. .. ..+....+..+-.-.|.+|..+...- -.+..-. .|+ |.|+.
T Consensus 108 ~-~~-------~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~i-PvV~i 153 (344)
T 3kjx_A 108 Y-LP-------EKEEKVLYEMLSWRPSGVIIAGLEHSEAARAMLDAAGI-PVVEI 153 (344)
T ss_dssp T-CH-------HHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHHCSS-CEEEE
T ss_pred C-CH-------HHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHhCCC-CEEEE
Confidence 2 11 22455667666678999998765422 2232222 344 88876
No 7
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=18.54 E-value=2e+02 Score=27.10 Aligned_cols=114 Identities=9% Similarity=0.105 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhhhccCCccchhhhhhcccCCCceeEEEEec--CChhHHHHHHHHhccCccccccEEEEeCCCchhhhh
Q 039620 298 QYVLDQILACTLKENLLPKVDKEKAIIRQSWNQTSKAVILTS--LSSGYFEKMRDMYWEYPTVTGEVIGIYQPSQERYQQ 375 (486)
Q Consensus 298 ~~~~~qI~~C~~~e~lLP~v~~~~~~~~~~~~~~~kaVlVtS--L~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShe~~Q~ 375 (486)
++.-+.|+..+.+-+--|+.... ....+..+.++|++.+ ....|+..+.+-..+.....|-.+.++. ++..
T Consensus 32 ~~tr~rV~~~a~~lgY~pn~~a~---~l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~--- 104 (338)
T 3dbi_A 32 QETKDRVFQAVEESGYRPNLLAR---NLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD-GKHS--- 104 (338)
T ss_dssp -------------------------------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEE-CTTS---
T ss_pred HHHHHHHHHHHHHHCCCcCHHHH---HhhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEe-CCCC---
Confidence 34445566666665555643211 1123445678999988 7777877776666555555565555544 2211
Q ss_pred ccchhhhHHHHHHHHHhhccCceeecCCCc-hhHHHHhh--cCCcceEeeC
Q 039620 376 TEKRTHNRKAWAEMYLLSLTDVLVTSSWST-FGYVAQSL--GGLRPWILYK 423 (486)
Q Consensus 376 ~~~~~h~~kAlaEmyLLS~sD~LVtS~~ST-FGYVAqgL--gGl~Pwil~~ 423 (486)
...+....+..+-.-.|.+|..+... ---+..-+ .| .|.|+..
T Consensus 105 ----~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~-iPvV~~~ 150 (338)
T 3dbi_A 105 ----AEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHS-QPIMVLN 150 (338)
T ss_dssp ----HHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHHHCS-SCEEEES
T ss_pred ----hHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHHcCC-CCEEEEc
Confidence 12345566777777899999877542 22222222 24 4888754
No 8
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=17.07 E-value=5.3e+02 Score=23.11 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=57.7
Q ss_pred cCCCceeEEEEecCChhHHHHHHHHhccCccccccEEEEeCCCchhhhhccchhhhHHHHHHHHHhhccCceeecCCCch
Q 039620 327 SWNQTSKAVILTSLSSGYFEKMRDMYWEYPTVTGEVIGIYQPSQERYQQTEKRTHNRKAWAEMYLLSLTDVLVTSSWSTF 406 (486)
Q Consensus 327 ~~~~~~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShe~~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS~~STF 406 (486)
+++.+.++|++.++...|+..+.+-..+.....|-.+.++.... . ...+....++.+-.-.|.+|..+.+.-
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~-------~~~~~~~~~~l~~~~vdgiIi~~~~~~ 75 (276)
T 3jy6_A 4 TQSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANA-D-------IEREKTLLRAIGSRGFDGLILQSFSNP 75 (276)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTT-C-------HHHHHHHHHHHHTTTCSEEEEESSCCH
T ss_pred CCCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC-C-------HHHHHHHHHHHHhCCCCEEEEecCCcH
Confidence 34566799999999888888888777666656665555543221 1 123567777777788999999988773
Q ss_pred hHHHHhh-cCCcceEeeC
Q 039620 407 GYVAQSL-GGLRPWILYK 423 (486)
Q Consensus 407 GYVAqgL-gGl~Pwil~~ 423 (486)
-.+..-. .|+ |.|+..
T Consensus 76 ~~~~~l~~~~i-PvV~i~ 92 (276)
T 3jy6_A 76 QTVQEILHQQM-PVVSVD 92 (276)
T ss_dssp HHHHHHHTTSS-CEEEES
T ss_pred HHHHHHHHCCC-CEEEEe
Confidence 3333332 344 887753
No 9
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=16.71 E-value=1.8e+02 Score=22.57 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=40.9
Q ss_pred CceeEEEEecCChhH-HHHHHHHhccCccccccEEEEeCCCchhhhhccchhhhHHHHHHH
Q 039620 330 QTSKAVILTSLSSGY-FEKMRDMYWEYPTVTGEVIGIYQPSQERYQQTEKRTHNRKAWAEM 389 (486)
Q Consensus 330 ~~~kaVlVtSL~~~y-~e~lr~~Y~~~~t~~Ge~v~V~qPShe~~Q~~~~~~h~~kAlaEm 389 (486)
...+.|+|..|.... -+.|++.|..... |+++.|..+.+-..=.|.+....++|+..|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~--g~v~~~~~~~g~afV~f~~~~~A~~A~~~l 71 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKP--GAVERVKKIRDYAFVHFSNREDAVEAMKAL 71 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTST--TCEEEEEECSSEEEEEESSHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCC--cceEEEEEeCCeEEEEeCCHHHHHHHHHHh
Confidence 345789999987643 4668888876533 778888777665555566777778888766
No 10
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=16.49 E-value=2.5e+02 Score=23.96 Aligned_cols=59 Identities=10% Similarity=-0.004 Sum_probs=37.8
Q ss_pred CCceeEEEEe-------cCChhHHHHHHHHhccCccccccEEEEeCCCchhhhhccchhhhHHHHHHHH
Q 039620 329 NQTSKAVILT-------SLSSGYFEKMRDMYWEYPTVTGEVIGIYQPSQERYQQTEKRTHNRKAWAEMY 390 (486)
Q Consensus 329 ~~~~kaVlVt-------SL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShe~~Q~~~~~~h~~kAlaEmy 390 (486)
|+...||-++ +|..++-++|+..+..+.|.+|.+|-.-| ++..|..++...++-|.++.
T Consensus 38 NKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q---~~RSQ~~Nr~~Al~rL~~~l 103 (112)
T 1j26_A 38 NKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSE---SSRYQFRNLAECLQKIRDMI 103 (112)
T ss_dssp SSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEEC---CCSSHHHHHHHHHHHHHHHH
T ss_pred cCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEEC---CccCHHHHHHHHHHHHHHHH
Confidence 3344566554 68889999999999999999997554333 33333334444555555553
Done!