Query 039620
Match_columns 486
No_of_seqs 137 out of 168
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 19:52:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039620.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039620hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tjya_ c.93.1.1 (A:) AI-2 rec 31.7 29 0.0021 29.7 5.5 72 329-407 2-73 (316)
2 d1ihua1 c.37.1.10 (A:1-296) Ar 25.0 40 0.0029 29.0 5.2 47 91-137 8-56 (296)
3 d2nzug1 c.93.1.1 (G:58-332) Gl 20.6 80 0.0058 26.4 6.2 86 329-422 2-88 (275)
4 d1prtb2 d.169.1.2 (B:4-89) Per 20.0 5.8 0.00043 30.2 -1.4 19 398-416 44-67 (86)
5 d1prtc2 d.169.1.2 (C:4-89) Per 17.6 5.8 0.00043 30.2 -1.9 19 398-416 44-67 (86)
6 d2fvya1 c.93.1.1 (A:2-306) Gal 16.8 95 0.0069 26.0 5.8 70 332-409 3-73 (305)
7 d2bz2a1 d.58.7.1 (A:35-113) Ne 16.8 1.1E+02 0.008 21.5 5.4 62 331-395 4-65 (79)
8 d2cpda1 d.58.7.1 (A:223-308) A 16.2 85 0.0062 22.4 4.6 58 331-390 7-65 (86)
9 d1jmsa1 a.60.6.1 (A:148-242) T 14.5 1.9E+02 0.014 21.6 6.5 73 39-114 8-82 (95)
10 d1wwha1 d.58.7.1 (A:169-249) N 13.6 1E+02 0.0076 22.3 4.5 50 333-386 5-56 (81)
No 1
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=31.70 E-value=29 Score=29.66 Aligned_cols=72 Identities=15% Similarity=0.129 Sum_probs=51.8
Q ss_pred CCceeEEEEecCChhHHHHHHHHhccCccccccEEEEeCCCchhhhhccchhhhHHHHHHHHHhhccCceeecCCCchh
Q 039620 329 NQTSKAVILTSLSSGYFEKMRDMYWEYPTVTGEVIGIYQPSQERYQQTEKRTHNRKAWAEMYLLSLTDVLVTSSWSTFG 407 (486)
Q Consensus 329 ~~~~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShe~~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS~~STFG 407 (486)
+.+.++|++.++.-.|+..+.+--.+....-|=-+.+..|+.... ..|.+..|..+-.-.|.+|+++.++=+
T Consensus 2 ~~~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~v~~~~~~~~d~-------~~q~~~i~~~i~~~~dgIIi~~~~~~~ 73 (316)
T d1tjya_ 2 SAERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSV-------SGQVQLVNNFVNQGYDAIIVSAVSPDG 73 (316)
T ss_dssp CCCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSCCH-------HHHHHHHHHHHHTTCSEEEECCSSSST
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCH-------HHHHHHHHHHHhcCCCeeeecccccch
Confidence 356789999999999999988777666666663344555664322 236778888888899999998876533
No 2
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
Probab=24.96 E-value=40 Score=29.01 Aligned_cols=47 Identities=28% Similarity=0.420 Sum_probs=38.4
Q ss_pred ccEEEEcccCCchhhHHHHHHHHHHHHHhCceeeeCCC--CCccccccC
Q 039620 91 CNYLVWISFSGLGNRILTLASAFLYALLTNRVLLVDPG--VDMVDLFCE 137 (486)
Q Consensus 91 CkYlVw~~~~GLGNRmlslaSaFLYALLT~RVLLVd~~--~d~~~LFCE 137 (486)
-||+++.+-.|-|==-+|.+-|..+|-.=.||||||-. ..++++|--
T Consensus 8 p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~~~l~~~lg~ 56 (296)
T d1ihua1 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQ 56 (296)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHTTS
T ss_pred CeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCCCCHHHHhCC
Confidence 68999988899999999999898888888999999843 445566643
No 3
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=20.64 E-value=80 Score=26.39 Aligned_cols=86 Identities=14% Similarity=0.066 Sum_probs=54.5
Q ss_pred CCceeEEEEecCChhHHHHHHHHhccCccccccEEEEeCCCchhhhhccchhhhHHHHHHHHHhhccCceeecCCCchhH
Q 039620 329 NQTSKAVILTSLSSGYFEKMRDMYWEYPTVTGEVIGIYQPSQERYQQTEKRTHNRKAWAEMYLLSLTDVLVTSSWSTFGY 408 (486)
Q Consensus 329 ~~~~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShe~~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS~~STFGY 408 (486)
+.+.++|+|.++...||..+-+-..+.....|=-+.++. +.+ ....+++..|+.+-.-.|.+|..+...-..
T Consensus 2 kt~tIgvvvp~l~~~f~~~~~~gi~~~~~~~g~~~~~~~-~~~-------~~~~e~~~i~~~~~~~vdgii~~~~~~~~~ 73 (275)
T d2nzug1 2 KTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSN-SDQ-------NQDKELHLLNNMLGKQVDGIIFMSGNVTEE 73 (275)
T ss_dssp CCSEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE-CTT-------CHHHHHHHHHHHHTTCCSEEEECCSCCCHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHHHHHcCCEEEEEE-CCC-------CHHHHHHHHHHHHhcCCceeeccccchhhH
Confidence 457799999999888887776666555555554343432 221 122367778888888999999888655444
Q ss_pred HHH-hhcCCcceEee
Q 039620 409 VAQ-SLGGLRPWILY 422 (486)
Q Consensus 409 VAq-gLgGl~Pwil~ 422 (486)
... -...-.|.++.
T Consensus 74 ~~~~l~~~~~pvv~~ 88 (275)
T d2nzug1 74 HVEELKKSPVPVVLA 88 (275)
T ss_dssp HHHHHHHCSSCEEEE
T ss_pred HHHHHhhcccccccc
Confidence 433 23334576664
No 4
>d1prtb2 d.169.1.2 (B:4-89) Pertussis toxin, S2/S3 subunits, N-terminal domain {Bordetella pertussis [TaxId: 520]}
Probab=20.00 E-value=5.8 Score=30.17 Aligned_cols=19 Identities=42% Similarity=0.908 Sum_probs=16.9
Q ss_pred eeecCCCchh-----HHHHhhcCC
Q 039620 398 LVTSSWSTFG-----YVAQSLGGL 416 (486)
Q Consensus 398 LVtS~~STFG-----YVAqgLgGl 416 (486)
.||-+||-|| |++|.+||+
T Consensus 44 ~it~gwsi~~lydgtylg~~yggi 67 (86)
T d1prtb2 44 HVTRGWSIFALYDGTYLGGEYGGV 67 (86)
T ss_dssp TTCCSSCEEECSSEEEECGGGCSE
T ss_pred hcCCCceEEEEeccceeccccCce
Confidence 4799999998 789999997
No 5
>d1prtc2 d.169.1.2 (C:4-89) Pertussis toxin, S2/S3 subunits, N-terminal domain {Bordetella pertussis [TaxId: 520]}
Probab=17.65 E-value=5.8 Score=30.17 Aligned_cols=19 Identities=42% Similarity=1.090 Sum_probs=16.6
Q ss_pred eeecCCCchh-----HHHHhhcCC
Q 039620 398 LVTSSWSTFG-----YVAQSLGGL 416 (486)
Q Consensus 398 LVtS~~STFG-----YVAqgLgGl 416 (486)
.||-+||-|| |++|.+||+
T Consensus 44 ~it~gwsi~~lydgtylg~~yggi 67 (86)
T d1prtc2 44 QITPGWSIYGLYDGTYLGQAYGGI 67 (86)
T ss_dssp HHCCTTCEEECSSSEEECTTTTSE
T ss_pred hcCCCceEEEEeccceeccccCce
Confidence 4799999998 789999996
No 6
>d2fvya1 c.93.1.1 (A:2-306) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]}
Probab=16.84 E-value=95 Score=26.04 Aligned_cols=70 Identities=9% Similarity=0.040 Sum_probs=48.2
Q ss_pred eeEEEEecCChhHHHHHHHHhccCcccc-ccEEEEeCCCchhhhhccchhhhHHHHHHHHHhhccCceeecCCCchhHH
Q 039620 332 SKAVILTSLSSGYFEKMRDMYWEYPTVT-GEVIGIYQPSQERYQQTEKRTHNRKAWAEMYLLSLTDVLVTSSWSTFGYV 409 (486)
Q Consensus 332 ~kaVlVtSL~~~y~e~lr~~Y~~~~t~~-Ge~v~V~qPShe~~Q~~~~~~h~~kAlaEmyLLS~sD~LVtS~~STFGYV 409 (486)
.++|+|..+...|+..+++---+..... |-.+.+.. +.. ....+.+.+|..+-+-.|.+|..+.++=...
T Consensus 3 kIgv~~~~~~~~f~~~i~~gi~~~a~~~~~~~l~~~~-~~~-------~~~~q~~~i~~li~~~vDgiii~~~~~~~~~ 73 (305)
T d2fvya1 3 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND-SQN-------DQSKQNDQIDVLLAKGVKALAINLVDPAAAG 73 (305)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEE-CTT-------CHHHHHHHHHHHHHTTCSEEEECCSSGGGHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEc-CCC-------CHHHHHHHHHHHHHcCCCEEEeecccccccH
Confidence 4799999999999998877765544333 33344433 221 2223677788888889999999998875544
No 7
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.84 E-value=1.1e+02 Score=21.50 Aligned_cols=62 Identities=11% Similarity=0.123 Sum_probs=39.5
Q ss_pred ceeEEEEecCChhHHHHHHHHhccCccccccEEEEeCCCchhhhhccchhhhHHHHHHHHHhhcc
Q 039620 331 TSKAVILTSLSSGYFEKMRDMYWEYPTVTGEVIGIYQPSQERYQQTEKRTHNRKAWAEMYLLSLT 395 (486)
Q Consensus 331 ~~kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShe~~Q~~~~~~h~~kAlaEmyLLS~s 395 (486)
+.+.|+|..+. -=-+.|++.|.+...+.. +.+..+.+-..=.+.+.....+|+.+|-=..+.
T Consensus 4 ~~~ti~V~~~~-~te~~L~~~F~~~G~I~~--v~~~~~~~~afV~f~~~~~A~~Ai~~lng~~~~ 65 (79)
T d2bz2a1 4 KGNTLYVYGED-MTPTLLRGAFSPFGNIID--LSMDPPRNCAFVTYEKMESADQAVAELNGTQVE 65 (79)
T ss_dssp CCCEEEEECSS-CCHHHHHHHHSTTCCCSC--EEEETTTTEEEEECSSHHHHHHHHHHHTTCBCS
T ss_pred CCCEEEEECCC-CCHHHHHHHHhccCccce--eeeccCCCEEEEEEcccHHHHHHHHHhCCCEEC
Confidence 44689999986 456899999987754432 333444444444566677778888887433333
No 8
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.19 E-value=85 Score=22.37 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=43.3
Q ss_pred ceeEEEEecCChh-HHHHHHHHhccCccccccEEEEeCCCchhhhhccchhhhHHHHHHHH
Q 039620 331 TSKAVILTSLSSG-YFEKMRDMYWEYPTVTGEVIGIYQPSQERYQQTEKRTHNRKAWAEMY 390 (486)
Q Consensus 331 ~~kaVlVtSL~~~-y~e~lr~~Y~~~~t~~Ge~v~V~qPShe~~Q~~~~~~h~~kAlaEmy 390 (486)
+.+.|+|..|..+ --+.|+++|..... ++++.+..+.+-..=.+.+..+.++|+..|-
T Consensus 7 ~~k~l~V~nLp~~~te~~l~~~F~~~g~--i~~~~~~~~rg~afV~f~~~~~A~~Ai~~l~ 65 (86)
T d2cpda1 7 SVKILYVRNLMLSTSEEMIEKEFNNIKP--GAVERVKKIRDYAFVHFSNREDAVEAMKALN 65 (86)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTST--TCEEEEEECSSEEEEEESSHHHHHHHHHHHS
T ss_pred CCCEEEEcCCCCCCCHHHHHHhhcccce--eeeEEEccccEEEEEEeCCHHHHHHHHHHcC
Confidence 3478999999884 45678888876643 4567787877777777788888888887763
No 9
>d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.54 E-value=1.9e+02 Score=21.61 Aligned_cols=73 Identities=12% Similarity=0.089 Sum_probs=45.8
Q ss_pred hhccCCCCCCChHHHHHHHhHHHHhcccC--CCchhHHHHHHHhhcCCCCCCCCccEEEEcccCCchhhHHHHHHHHH
Q 039620 39 FYRKELSRKPSSYLISRLRSYEALHQRCG--PYTESYNKTLQKLKSGNQPESSDCNYLVWISFSGLGNRILTLASAFL 114 (486)
Q Consensus 39 ~yrk~s~~~pspyL~s~LR~Ye~lHrrCg--p~t~~y~~a~~~l~s~~~~~~~~CkYlVw~~~~GLGNRmlslaSaFL 114 (486)
.-|+...--|+..+++.|+.-+.+..-=| ....+|++|...|++-...-.+.=. .....|+|-.|...+--||
T Consensus 8 c~r~~~~~~~N~~i~~~L~~la~~~e~~g~~fr~~AY~rAa~~i~~l~~~i~~~~~---l~~i~GIGk~i~~kI~Eil 82 (95)
T d1jmsa1 8 CQRRTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKD---TEGIPCLGDKVKSIIEGII 82 (95)
T ss_dssp GGSCBCSCCTTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTCSSCCCSGGG---GTTCSSCCHHHHHHHHHHH
T ss_pred ccCCCCCCCccHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCcccCCHHH---HHhccchhHHHHHHHHHHH
Confidence 34666566789999988888777654223 2235699999999875422111101 2356899998876655443
No 10
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.64 E-value=1e+02 Score=22.31 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=37.6
Q ss_pred eEEEEecCChhHHHHHHHHhccCccccccEEEEeCCCchh--hhhccchhhhHHHH
Q 039620 333 KAVILTSLSSGYFEKMRDMYWEYPTVTGEVIGIYQPSQER--YQQTEKRTHNRKAW 386 (486)
Q Consensus 333 kaVlVtSL~~~y~e~lr~~Y~~~~t~~Ge~v~V~qPShe~--~Q~~~~~~h~~kAl 386 (486)
..|+|..+.++-.+.+.+.|.+. |+++.|..+...+ +=.+.+....++||
T Consensus 5 ~wV~V~G~p~~~~~~il~~F~~~----G~I~~~~~~~~~~~~fV~f~~~~~A~~Al 56 (81)
T d1wwha1 5 TWVTVFGFPQASASYILLQFAQY----GNILKHVMSNTGNWMHIRYQSKLQARKAL 56 (81)
T ss_dssp GEEEEECCCGGGHHHHHHHHHTT----SCEEEEEECSSSSEEEEEESSHHHHHHHH
T ss_pred cEEEEECCChHHHHHHHHHHHhh----hhhheEEecCCCCEEEEEEcccHHHHHHH
Confidence 57999999998888888888654 7788887665443 44567777778887
Done!