BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039623
(292 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 343 bits (881), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 173/275 (62%), Positives = 207/275 (75%), Gaps = 3/275 (1%)
Query: 19 EASVKAGHPTFALVRESTAS-DPVKGKLIEIFKNLGVNVLYGDLQDHESLIKAIKQVDVV 77
+AS+ GHPTF LVRESTAS + K +L+E FK G N+++G + DH SL++A+K VDVV
Sbjct: 22 KASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVV 81
Query: 78 ISTVSRGQIPEQAKIIAAVKEAGNVKRFLPSEFGNDVDRSQNVVEPAKSAYADKIKIRRA 137
ISTV QI Q II A+KE G VKRF PSEFGNDVD + + VEPAKS + K K+RRA
Sbjct: 82 ISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVD-NVHAVEPAKSVFEVKAKVRRA 140
Query: 138 IEAEGIQYTYVSCNCFAGYFLPTLAQIGAPAPPREKVTIFGDGNAGAVYNKEDDIATYTI 197
IEAEGI YTYVS NCFAGYFL +LAQ G APPR+KV I GDGNA V+ KE+DI T+TI
Sbjct: 141 IEAEGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTI 200
Query: 198 NSIDGPRTLNKTLYIRPPGNVYSFNELVTLWENKIGKTLEKTYVAEEKLLKDIQDAPIPL 257
++D PRTLNKTLY+R P N S NELV LWE KI KTLEK YV EE++LK I D P P
Sbjct: 201 KAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPA 260
Query: 258 NVLLAITYATFVKGDQANFEINTASGVEASELYPE 292
N+ +AI+++ FVKGDQ NFEI A GVEAS+LYP+
Sbjct: 261 NISIAISHSIFVKGDQTNFEIGPA-GVEASQLYPD 294
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 300 bits (767), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 151/275 (54%), Positives = 202/275 (73%), Gaps = 4/275 (1%)
Query: 20 ASVKAGHPTFALVRES-TASDP-VKGKLIEIFKNLGVNVLYGDLQDHESLIKAIKQVDVV 77
AS+KAG+PT+ALVR++ TA++P K +LI+ +++LGV +L GD+ DHE+L+KAIKQVD+V
Sbjct: 21 ASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIV 80
Query: 78 ISTVSRGQIPEQAKIIAAVKEAGNVKRFLPSEFGNDVDRSQNVVEPAKSAYADKIKIRRA 137
I R I +Q KII A+KEAGNVK+F PSEFG DVDR + VEP + + +K IRR
Sbjct: 81 ICAAGRLLIEDQVKIIKAIKEAGNVKKFFPSEFGLDVDR-HDAVEPVRQVFEEKASIRRV 139
Query: 138 IEAEGIQYTYVSCNCFAGYFLPTLAQIGAPAPPREKVTIFGDGNAGAVYNKEDDIATYTI 197
IEAEG+ YTY+ C+ F GYFL LAQ+ A PPR+KV I GDGN Y E D+ T+TI
Sbjct: 140 IEAEGVPYTYLCCHAFTGYFLRNLAQLDATDPPRDKVVILGDGNVKGAYVTEADVGTFTI 199
Query: 198 NSIDGPRTLNKTLYIRPPGNVYSFNELVTLWENKIGKTLEKTYVAEEKLLKDIQDAPIPL 257
+ + P TLNK ++IR P N + NE++ LWE KIGKTLEKTYV+EE++LKDIQ++ P
Sbjct: 200 RAANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVSEEQVLKDIQESSFPH 259
Query: 258 NVLLAITYATFVKGDQANFEINTASGVEASELYPE 292
N LLA+ ++ +KGD A +EI+ A +EASE YP+
Sbjct: 260 NYLLALYHSQQIKGD-AVYEIDPAKDIEASEAYPD 293
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 265 bits (677), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 131/278 (47%), Positives = 181/278 (65%), Gaps = 6/278 (2%)
Query: 20 ASVKAGHPTFALVRESTASDPVKGKLIEIFKNLGVNVLYGDLQDHESLIKAIKQVDVVIS 79
AS+ GHPT+ L R S+ K +++ FK LG ++ L DH+ L+ A+KQVDVVIS
Sbjct: 23 ASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS 82
Query: 80 TVSRG----QIPEQAKIIAAVKEAGNVKRFLPSEFGNDVDRSQNVVEPAKSAYADKIKIR 135
++ G I EQ K++ A+KEAGN+KRFLPSEFG D D ++ ++P + DK K+R
Sbjct: 83 ALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIMEHALQPGSITFIDKRKVR 142
Query: 136 RAIEAEGIQYTYVSCNCFAGYFLPTLAQI-GAPAPPREKVTIFGDGNAGAVYNKEDDIAT 194
RAIEA I YTYVS N FAGYF +LAQ+ G PPR+KV I+GDGN ++ EDD+ T
Sbjct: 143 RAIEAASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGT 202
Query: 195 YTINSIDGPRTLNKTLYIRPPGNVYSFNELVTLWENKIGKTLEKTYVAEEKLLKDIQDAP 254
YTI SID P+TLNKT+YIRPP N+ S E++ +WE + L+K Y++ + L D++D
Sbjct: 203 YTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYISSQDFLADMKDKS 262
Query: 255 IPLNVLLAITYATFVKGDQANFEINTASGVEASELYPE 292
++ Y F +GD NFEI + +EA++LYPE
Sbjct: 263 YEEKIVRCHLYQIFFRGDLYNFEIG-PNAIEATKLYPE 299
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 218 bits (554), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 117/275 (42%), Positives = 170/275 (61%), Gaps = 5/275 (1%)
Query: 20 ASVKAGHPTFALVRESTA-SDPVKGKLIEIFKNLGVNVLYGDLQDHESLIKAIKQVDVVI 78
AS+ HPTF R T S P +L E F+++GV ++ G++++HE ++ +KQVD+VI
Sbjct: 23 ASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVI 82
Query: 79 STVSRGQIPEQAKIIAAVKEAGNVKRFLPSEFGNDVDRSQNVVEPAKSAYADKIKIRRAI 138
S + I Q II A+K AGN+KRFLPS+FG + DR + + P +S K IRRAI
Sbjct: 83 SALPFPMISSQIHIINAIKAAGNIKRFLPSDFGCEEDRIKPL-PPFESVLEKKRIIRRAI 141
Query: 139 EAEGIQYTYVSCNCFAGYFLPTLAQIGAPAPPR-EKVTIFGDGNAGAVYNKEDDIATYTI 197
EA + YTYVS NCF YF+ L +P P R + + I+G G V N E+DIA YTI
Sbjct: 142 EAAALPYTYVSANCFGAYFVNYLLH-PSPHPNRNDDIVIYGTGETKFVLNYEEDIAKYTI 200
Query: 198 NSIDGPRTLNKTLYIRPPGNVYSFNELVTLWENKIGKTLEKTYVAEEKLLKDIQDAPIPL 257
PR N+ + RPP N+ S NEL++LWE K G + +K ++ +E+L++ Q+ P P
Sbjct: 201 KVACDPRCCNRIVIYRPPKNIISQNELISLWEAKSGLSFKKVHMPDEQLVRLSQELPQPQ 260
Query: 258 NVLLAITYATFVKGDQANFEINTASGVEASELYPE 292
N+ ++I ++ FVKGD ++E+ +EAS LYPE
Sbjct: 261 NIPVSILHSIFVKGDLMSYEMR-KDDIEASNLYPE 294
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/275 (38%), Positives = 163/275 (59%), Gaps = 4/275 (1%)
Query: 20 ASVKAGHPTFALVRESTASDPVKGKLIEIFKNLGVNVLYGDLQDHESLIKAIKQ--VDVV 77
AS+ A PT+ L R S P K K+ + ++ G ++YG + + E++ K +K+ +D+V
Sbjct: 29 ASLDAHRPTYILARPGPRS-PSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIV 87
Query: 78 ISTVSRGQIPEQAKIIAAVKEAGNVKRFLPSEFGNDVDRSQNVVEPAKSAYADKIKIRRA 137
+STV I +Q ++ A+K G +KRFLPSEFG+DV+R+ + VEP + Y +K ++R+
Sbjct: 88 VSTVGGESILDQIALVKAMKAVGTIKRFLPSEFGHDVNRA-DPVEPGLNMYREKRRVRQL 146
Query: 138 IEAEGIQYTYVSCNCFAGYFLPTLAQIGAPAPPREKVTIFGDGNAGAVYNKEDDIATYTI 197
+E GI +TY+ CN A + PP + I+GDGN A + DI +T+
Sbjct: 147 VEESGIPFTYICCNSIASWPYYNNIHPSEVLPPTDFFQIYGDGNVKAYFVAGTDIGKFTM 206
Query: 198 NSIDGPRTLNKTLYIRPPGNVYSFNELVTLWENKIGKTLEKTYVAEEKLLKDIQDAPIPL 257
++D RTLNK+++ RP N + NEL ++WE KIG+TL + V E+ LL + IP
Sbjct: 207 KTVDDVRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLAAAGENIIPQ 266
Query: 258 NVLLAITYATFVKGDQANFEINTASGVEASELYPE 292
+V+ A T+ F+KG Q NF I+ VE + LYPE
Sbjct: 267 SVVAAFTHDIFIKGCQVNFSIDGPEDVEVTTLYPE 301
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 197 bits (502), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 113/274 (41%), Positives = 171/274 (62%), Gaps = 9/274 (3%)
Query: 19 EASVKAGHPTFALVRESTASDPVKGKLIEIFKNLGVNVLYGDLQDHESLIKAIKQVDVVI 78
+ S+K GHPT+ R +++ K L++ F++LG ++ G+L +HE L++ +K+VDVVI
Sbjct: 25 KGSLKLGHPTYVFTRPNSS----KTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVI 80
Query: 79 STVSRGQIPEQAKIIAAVKEAGNVKRFLPSEFGNDVDRSQNVVEPAKSAYADKIKIRRAI 138
S ++ QI +Q KI+ A+K AGN+KRFLPS+FG + DR N + P ++ K IRRAI
Sbjct: 81 SALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRI-NALPPFEALIERKRMIRRAI 139
Query: 139 EAEGIQYTYVSCNCFAGYFLPTLAQIGAPAPPREKVTIFGDGNAGAVYNKEDDIATYTIN 198
E I YTYVS NCFA YF+ L + P P++++T++G G A N E DI YTI
Sbjct: 140 EEANIPYTYVSANCFASYFINYLLR---PYDPKDEITVYGTGEAKFAMNYEQDIGLYTIK 196
Query: 199 SIDGPRTLNKTLYIRPPGNVYSFNELVTLWENKIGKTLEKTYVAEEKLLKDIQDAPIPLN 258
PR LN+ + RP N+ + EL++ WE KIGK +K +V EE+++ ++ P P N
Sbjct: 197 VATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVPEEEIVALTKELPEPEN 256
Query: 259 VLLAITYATFVKGDQANFEINTASGVEASELYPE 292
+ +AI + F+ G +++ + VEAS LYPE
Sbjct: 257 IPIAILHCLFIDGATMSYDFK-ENDVEASTLYPE 289
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 197 bits (501), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 113/274 (41%), Positives = 171/274 (62%), Gaps = 9/274 (3%)
Query: 19 EASVKAGHPTFALVRESTASDPVKGKLIEIFKNLGVNVLYGDLQDHESLIKAIKQVDVVI 78
+ S+K GHPT+ R +++ K L++ F++LG ++ G+L +HE L++ +K+VDVVI
Sbjct: 29 KGSLKLGHPTYVFTRPNSS----KTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVI 84
Query: 79 STVSRGQIPEQAKIIAAVKEAGNVKRFLPSEFGNDVDRSQNVVEPAKSAYADKIKIRRAI 138
S ++ QI +Q KI+ A+K AGN+KRFLPS+FG + DR N + P ++ K IRRAI
Sbjct: 85 SALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRI-NALPPFEALIERKRMIRRAI 143
Query: 139 EAEGIQYTYVSCNCFAGYFLPTLAQIGAPAPPREKVTIFGDGNAGAVYNKEDDIATYTIN 198
E I YTYVS NCFA YF+ L + P P++++T++G G A N E DI YTI
Sbjct: 144 EEANIPYTYVSANCFASYFINYLLR---PYDPKDEITVYGTGEAKFAMNYEQDIGLYTIK 200
Query: 199 SIDGPRTLNKTLYIRPPGNVYSFNELVTLWENKIGKTLEKTYVAEEKLLKDIQDAPIPLN 258
PR LN+ + RP N+ + EL++ WE KIGK +K +V EE+++ ++ P P N
Sbjct: 201 VATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVPEEEIVALTKELPEPEN 260
Query: 259 VLLAITYATFVKGDQANFEINTASGVEASELYPE 292
+ +AI + F+ G +++ + VEAS LYPE
Sbjct: 261 IPIAILHCLFIDGATMSYDFK-ENDVEASTLYPE 293
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/274 (40%), Positives = 171/274 (62%), Gaps = 9/274 (3%)
Query: 19 EASVKAGHPTFALVRESTASDPVKGKLIEIFKNLGVNVLYGDLQDHESLIKAIKQVDVVI 78
+ S+K GHPT+ R +++ K L++ F++LG ++ G+L +HE L++ +K+VDVVI
Sbjct: 29 KGSLKLGHPTYVFTRPNSS----KTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVI 84
Query: 79 STVSRGQIPEQAKIIAAVKEAGNVKRFLPSEFGNDVDRSQNVVEPAKSAYADKIKIRRAI 138
S ++ QI +Q KI+ A+K AGN+KRFLPS+FG + DR N + P ++ + IRRAI
Sbjct: 85 SALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRI-NALPPFEALIERQRMIRRAI 143
Query: 139 EAEGIQYTYVSCNCFAGYFLPTLAQIGAPAPPREKVTIFGDGNAGAVYNKEDDIATYTIN 198
E I YTYVS NCFA YF+ L + P P++++T++G G A N E DI YTI
Sbjct: 144 EEANIPYTYVSANCFASYFINYLLR---PYDPKDEITVYGTGEAKFAMNYEQDIGLYTIK 200
Query: 199 SIDGPRTLNKTLYIRPPGNVYSFNELVTLWENKIGKTLEKTYVAEEKLLKDIQDAPIPLN 258
PR LN+ + RP N+ + EL++ WE KIGK +K +V EE+++ ++ P P N
Sbjct: 201 VATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVPEEEIVALTKELPEPEN 260
Query: 259 VLLAITYATFVKGDQANFEINTASGVEASELYPE 292
+ +AI + F+ G +++ + VEAS LYPE
Sbjct: 261 IPIAILHCLFIDGATMSYDFK-ENDVEASTLYPE 293
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 195 bits (495), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 112/274 (40%), Positives = 170/274 (62%), Gaps = 9/274 (3%)
Query: 19 EASVKAGHPTFALVRESTASDPVKGKLIEIFKNLGVNVLYGDLQDHESLIKAIKQVDVVI 78
+ S+K GHPT+ R +++ K L++ F++LG ++ G+L +HE L++ +K+VDVVI
Sbjct: 29 KGSLKLGHPTYVFTRPNSS----KTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVI 84
Query: 79 STVSRGQIPEQAKIIAAVKEAGNVKRFLPSEFGNDVDRSQNVVEPAKSAYADKIKIRRAI 138
S ++ Q +Q KI+ A+K AGN+KRFLPS+FG + DR N + P ++ K IRRAI
Sbjct: 85 SALAVPQYLDQFKILEAIKVAGNIKRFLPSDFGVEEDRI-NALPPFEALIERKRMIRRAI 143
Query: 139 EAEGIQYTYVSCNCFAGYFLPTLAQIGAPAPPREKVTIFGDGNAGAVYNKEDDIATYTIN 198
E I YTYVS NCFA YF+ L + P P++++T++G G A N E DI YTI
Sbjct: 144 EEANIPYTYVSANCFASYFINYLLR---PYDPKDEITVYGTGEAKFAMNYEQDIGLYTIK 200
Query: 199 SIDGPRTLNKTLYIRPPGNVYSFNELVTLWENKIGKTLEKTYVAEEKLLKDIQDAPIPLN 258
PR LN+ + RP N+ + EL++ WE KIGK +K +V EE+++ ++ P P N
Sbjct: 201 VATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVPEEEIVALTKELPEPEN 260
Query: 259 VLLAITYATFVKGDQANFEINTASGVEASELYPE 292
+ +AI + F+ G +++ + VEAS LYPE
Sbjct: 261 IPIAILHCLFIDGATMSYDFK-ENDVEASTLYPE 293
>pdb|3E48|A Chain A, Crystal Structure Of A Nucleoside-Diphosphate-Sugar
Epimerase (Sav0421) From Staphylococcus Aureus,
Northeast Structural Genomics Consortium Target Zr319
pdb|3E48|B Chain B, Crystal Structure Of A Nucleoside-Diphosphate-Sugar
Epimerase (Sav0421) From Staphylococcus Aureus,
Northeast Structural Genomics Consortium Target Zr319
Length = 289
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 80/224 (35%), Gaps = 22/224 (9%)
Query: 54 VNVLYGDLQDHESLIKAIKQVDVV-----ISTVSRGQIPEQAKIIAAVKEAGNVKRFLPS 108
V+V D + ES ++A K D V I S +IPE ++ A K++G
Sbjct: 46 VSVRQLDYFNQESXVEAFKGXDTVVFIPSIIHPSFKRIPEVENLVYAAKQSGVAHIIF-- 103
Query: 109 EFGNDVDRSQNVVEPAKS-AYADKIKIRRAIEAEGIQYTYVSCNCFAGYFLPTLAQIGAP 167
G D+ N + YA R + GI YTYV + P L P
Sbjct: 104 -IGYYADQHNNPFHXSPYFGYAS-----RLLSTSGIDYTYVRXAXYXDPLKPYL-----P 152
Query: 168 APPREKVTIFGDGNAGAVYNKEDDIATYTINSIDGPRTLNKTLYIRPPGNVYSFNELVTL 227
I+ G+ Y +DIA I I P T K + G Y EL +
Sbjct: 153 ELXNXHKLIYPAGDGRINYITRNDIARGVIAIIKNPDTWGKRYLLS--GYSYDXKELAAI 210
Query: 228 WENKIGKTLEKTYVAEEKLLKDIQDAPIPLNVLLAITYATFVKG 271
G ++ V+ E + D P LLA Y +G
Sbjct: 211 LSEASGTEIKYEPVSLET-FAEXYDEPKGFGALLASXYHAGARG 253
>pdb|3QVO|A Chain A, Structure Of A Rossmann-Fold Nad(P)-Binding Family Protein
From Shigella Flexneri
Length = 236
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 25/106 (23%)
Query: 56 VLYGDLQDHESLIKAIKQVDVVISTVSRGQIPEQAKIIAAVKEAGNVKRFL--------- 106
++ GD+ +H +L +A + D+V + ++ + QA + A +A +VKR +
Sbjct: 71 IIXGDVLNHAALKQAXQGQDIVYANLTGEDLDIQANSVIAAXKACDVKRLIFVLSLGIYD 130
Query: 107 --PSEFGNDVDRSQNVV-EPAKSAYADKIKIRR---AIEAEGIQYT 146
P +F V+ + V+ EP K RR AIEA G++YT
Sbjct: 131 EVPGKF---VEWNNAVIGEPLKP-------FRRAADAIEASGLEYT 166
>pdb|2VRC|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|B Chain B, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|C Chain C, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
Length = 287
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 87/227 (38%), Gaps = 20/227 (8%)
Query: 53 GVNVLYGDLQDHESLIKAIKQVD--VVISTVSRGQ---IPEQAKIIAAVKEAGNVKRFLP 107
GV V +GD ESL KA V + IS I + A ++ A ++AG VK
Sbjct: 46 GVEVRHGDYNQPESLQKAFAGVSKLLFISGPHYDNTLLIVQHANVVKAARDAG-VKHIAY 104
Query: 108 SEFGNDVDRSQNVVEPAKSAYADKIKIRRAIEAEGIQYTYVSCNCFAGYFLPTLAQIGAP 167
+ + ++ + P + + AI I YT++ + +F+ + A
Sbjct: 105 TGYA----FAEESIIPLAHVH---LATEYAIRTTNIPYTFLRNALYTDFFVNE--GLRAS 155
Query: 168 APPREKVTIFGDGNAGAVYNKEDDIATYTINSIDGPRTLNKTLYIRPPGNVYSFNELVTL 227
VT G G +V E +A T+ + +G L P ++F+EL +
Sbjct: 156 TESGAIVTNAGSGIVNSVTRNELALAAATVLTEEGHENKTYNLVSNQP---WTFDELAQI 212
Query: 228 WENKIGKTLEKTYVA--EEKLLKDIQDAPIPLNVLLAITYATFVKGD 272
GK + V+ EEK P P + A Y KG+
Sbjct: 213 LSEVSGKKVVHQPVSFEEEKNFXVNAGVPEPFAEITAAIYDAISKGE 259
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of Triphenylmethane
Dyes By Citrobacter Sp. Triphenylmethane Reductase
Length = 287
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 87/227 (38%), Gaps = 20/227 (8%)
Query: 53 GVNVLYGDLQDHESLIKAIKQVD--VVISTVSRGQ---IPEQAKIIAAVKEAGNVKRFLP 107
GV V +GD ESL KA V + IS I + A ++ A ++AG VK
Sbjct: 46 GVEVRHGDYNQPESLQKAFAGVSKLLFISGPHYDNTLLIVQHANVVKAARDAG-VKHIAY 104
Query: 108 SEFGNDVDRSQNVVEPAKSAYADKIKIRRAIEAEGIQYTYVSCNCFAGYFLPTLAQIGAP 167
+ + ++ + P + + AI I YT++ + +F+ + A
Sbjct: 105 TGYA----FAEESIIPLAHVH---LATEYAIRTTNIPYTFLRNALYTDFFVN--EGLRAS 155
Query: 168 APPREKVTIFGDGNAGAVYNKEDDIATYTINSIDGPRTLNKTLYIRPPGNVYSFNELVTL 227
VT G G +V E +A T+ + +G L P ++F+EL +
Sbjct: 156 TESGAIVTNAGSGIVNSVTRNELALAAATVLTEEGHENKTYNLVSNQP---WTFDELAQI 212
Query: 228 WENKIGKTLEKTYVA--EEKLLKDIQDAPIPLNVLLAITYATFVKGD 272
GK + V+ EEK P P + A Y KG+
Sbjct: 213 LSEVSGKKVVHQPVSFEEEKNFLVNAGVPEPFTEITAAIYDAISKGE 259
>pdb|2VRB|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(H)
Length = 287
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 87/227 (38%), Gaps = 20/227 (8%)
Query: 53 GVNVLYGDLQDHESLIKAIKQVD--VVISTVSRGQ---IPEQAKIIAAVKEAGNVKRFLP 107
GV V +GD ESL KA V + IS I + A ++ A ++AG VK
Sbjct: 46 GVEVRHGDYNQPESLQKAFAGVSKLLFISGPHYDNTLLIVQHANVVKAARDAG-VKHIAY 104
Query: 108 SEFGNDVDRSQNVVEPAKSAYADKIKIRRAIEAEGIQYTYVSCNCFAGYFLPTLAQIGAP 167
+ + ++ + P + + AI I YT++ + +F+ + A
Sbjct: 105 TGYA----FAEESIIPLAHVH---LATEYAIRTTNIPYTFLRNALYTDFFVNE--GLRAS 155
Query: 168 APPREKVTIFGDGNAGAVYNKEDDIATYTINSIDGPRTLNKTLYIRPPGNVYSFNELVTL 227
VT G G +V E +A T+ + +G L P ++F+EL +
Sbjct: 156 TESGAIVTNAGSGIVNSVTRNELALAAATVLTEEGHENKTYNLVSNQP---WTFDELAQI 212
Query: 228 WENKIGKTLEKTYVA--EEKLLKDIQDAPIPLNVLLAITYATFVKGD 272
GK + V+ EEK P P + A Y KG+
Sbjct: 213 LSEVSGKKVVHQPVSFEEEKNFLVNAGVPEPFAEITAAIYDAISKGE 259
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,096,439
Number of Sequences: 62578
Number of extensions: 347024
Number of successful extensions: 820
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 21
length of query: 292
length of database: 14,973,337
effective HSP length: 98
effective length of query: 194
effective length of database: 8,840,693
effective search space: 1715094442
effective search space used: 1715094442
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)