BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039624
(466 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
pdb|2W2I|B Chain B, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
pdb|2W2I|C Chain C, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
Length = 358
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 124/255 (48%), Gaps = 38/255 (14%)
Query: 114 SGEYYTFQEFETKAKNFEKSYLKKCGNKKAALSA-----LEIESLYWKASVDKPFSVEYA 168
SG+ F ++ K K ++ N K + ++E YWK+ P Y
Sbjct: 99 SGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPHQNFADLEQRYWKSHPGNP--PIYG 156
Query: 169 NDMPGSAFVPVRKIREAVGEGVTVGETPWNMRGVSRAKGSLLRFMKEE----IPGVTSPM 224
D+ GS F K WN+ + G++L +++E I GV +P
Sbjct: 157 ADISGSLFEESTK--------------QWNLGHL----GTILDLLEQECGVVIEGVNTPY 198
Query: 225 VYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINPL 284
+Y M + FAWH ED DL+S+NYLH G KTWY VP E E + R E+ P
Sbjct: 199 LYFGMWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLAR------ELFPD 252
Query: 285 VTF---ATLGEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAA 341
++ A L K +ISP V G+P + Q AGEF+VTFP YH GF+HGFNC EA
Sbjct: 253 ISRGCEAFLRHKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAI 312
Query: 342 NIATPEWLNIAKDAA 356
N ATP W++ K A+
Sbjct: 313 NFATPRWIDYGKMAS 327
>pdb|3DXU|A Chain A, The Crystal Structure Of Core Jmjd2d Complexed With Fe And
N- Oxalylglycine
Length = 337
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 107/344 (31%), Positives = 146/344 (42%), Gaps = 66/344 (19%)
Query: 23 FHPTLAEFQDPIAYIFKIEKE-ASQYGICKIXXXXXXXXKKTAITFLNRSLAQRXXXXXX 81
FHPT EF D YI +E + A + G+ KI ++T +A
Sbjct: 14 FHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARETYDNISEILIAT------- 66
Query: 82 XXXXXXXXXXXRQQQIGFCPRKPRPVQKPVWQSGEYYTFQEFETKAKNFEKSYLKKCGNK 141
P+Q+ SG F ++ K K + N
Sbjct: 67 ------------------------PLQQVA--SGRAGVFTQYHKKKKAMTVGEYRHLANS 100
Query: 142 KAALSA-----LEIESLYWKASV-DKPFSVEYANDMPGSAFVPVRKIREAVGEGVTVGET 195
K + ++E YWK + + P Y D+ GS F K
Sbjct: 101 KKYQTPPHQNFEDLERKYWKNRIYNSPI---YGADISGSLFDENTK-------------- 143
Query: 196 PWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASK 255
WN+ + + L + I GV +P +Y M + FAWH ED DL+S+NYLH+G K
Sbjct: 144 QWNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPK 203
Query: 256 TWYGVPMEAANAFEEVVRVHGYGEEINPLVTF---ATLGEKTTMISPEVFVGAGVPCCRL 312
TWY VP E E + R E+ P + A L K +ISP V G+P R+
Sbjct: 204 TWYVVPPEHGQRLERLAR------ELFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRI 257
Query: 313 VQNAGEFVVTFPRAYHMGFSHGFNCGEAANIATPEWLNIAKDAA 356
Q AGEF+VTFP YH GF+HGFNC EA N ATP W++ K A+
Sbjct: 258 TQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMAS 301
>pdb|3DXT|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2d
Length = 354
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/344 (31%), Positives = 146/344 (42%), Gaps = 66/344 (19%)
Query: 23 FHPTLAEFQDPIAYIFKIEKE-ASQYGICKIXXXXXXXXKKTAITFLNRSLAQRXXXXXX 81
FHPT EF D YI +E + A + G+ KI ++T +A
Sbjct: 21 FHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARETYDNISEILIAT------- 73
Query: 82 XXXXXXXXXXXRQQQIGFCPRKPRPVQKPVWQSGEYYTFQEFETKAKNFEKSYLKKCGNK 141
P+Q+ SG F ++ K K + N
Sbjct: 74 ------------------------PLQQVA--SGRAGVFTQYHKKKKAMTVGEYRHLANS 107
Query: 142 KAALSA-----LEIESLYWKASV-DKPFSVEYANDMPGSAFVPVRKIREAVGEGVTVGET 195
K + ++E YWK + + P Y D+ GS F K
Sbjct: 108 KKYQTPPHQNFEDLERKYWKNRIYNSPI---YGADISGSLFDENTK-------------- 150
Query: 196 PWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASK 255
WN+ + + L + I GV +P +Y M + FAWH ED DL+S+NYLH+G K
Sbjct: 151 QWNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPK 210
Query: 256 TWYGVPMEAANAFEEVVRVHGYGEEINPLVTF---ATLGEKTTMISPEVFVGAGVPCCRL 312
TWY VP E E + R E+ P + A L K +ISP V G+P R+
Sbjct: 211 TWYVVPPEHGQRLERLAR------ELFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRI 264
Query: 313 VQNAGEFVVTFPRAYHMGFSHGFNCGEAANIATPEWLNIAKDAA 356
Q AGEF+VTFP YH GF+HGFNC EA N ATP W++ K A+
Sbjct: 265 TQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMAS 308
>pdb|4HON|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An
H3k9me3 Peptide And 2-oxoglutarate
pdb|4HON|B Chain B, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An
H3k9me3 Peptide And 2-oxoglutarate
Length = 330
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/343 (31%), Positives = 145/343 (42%), Gaps = 64/343 (18%)
Query: 23 FHPTLAEFQDPIAYIFKIEKE-ASQYGICKIXXXXXXXXKKTAITFLNRSLAQRXXXXXX 81
FHPT EF D YI +E + A + G+ KI ++T +A
Sbjct: 10 FHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARETYDNISEILIAT------- 62
Query: 82 XXXXXXXXXXXRQQQIGFCPRKPRPVQKPVWQSGEYYTFQEFETKAKNFEKSYLKKCGNK 141
P+Q+ SG F ++ K K + N
Sbjct: 63 ------------------------PLQQVA--SGRAGVFTQYHKKKKAMTVGEYRHLANS 96
Query: 142 KAALSA-----LEIESLYWKASVDKPFSVEYANDMPGSAFVPVRKIREAVGEGVTVGETP 196
K + ++E YWK + S Y D+ GS F K
Sbjct: 97 KKYQTPPHQNFEDLERKYWKNRIYN--SPIYGADISGSLFDENTK--------------Q 140
Query: 197 WNMRGVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKT 256
WN+ + + L + I GV +P +Y M + FAWH ED DL+S+NYLH+G KT
Sbjct: 141 WNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKT 200
Query: 257 WYGVPMEAANAFEEVVRVHGYGEEINPLVTF---ATLGEKTTMISPEVFVGAGVPCCRLV 313
WY VP E E + R E+ P + A L K +ISP V G+P R+
Sbjct: 201 WYVVPPEHGQRLERLAR------ELFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRIT 254
Query: 314 QNAGEFVVTFPRAYHMGFSHGFNCGEAANIATPEWLNIAKDAA 356
Q AGEF+VTFP YH GF+HGFNC EA N ATP W++ K A+
Sbjct: 255 QEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMAS 297
>pdb|4HOO|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme
pdb|4HOO|B Chain B, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme
Length = 330
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/343 (31%), Positives = 145/343 (42%), Gaps = 64/343 (18%)
Query: 23 FHPTLAEFQDPIAYIFKIEKE-ASQYGICKIXXXXXXXXKKTAITFLNRSLAQRXXXXXX 81
FHPT EF D YI +E + A + G+ KI ++T +A
Sbjct: 10 FHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARETYDNISEILIAT------- 62
Query: 82 XXXXXXXXXXXRQQQIGFCPRKPRPVQKPVWQSGEYYTFQEFETKAKNFEKSYLKKCGNK 141
P+Q+ SG F ++ KA + N
Sbjct: 63 ------------------------PLQQVA--SGRAGVFTQYHKKAAAMTVGEYRHLANS 96
Query: 142 KAALSA-----LEIESLYWKASVDKPFSVEYANDMPGSAFVPVRKIREAVGEGVTVGETP 196
K + ++E YWK + S Y D+ GS F K
Sbjct: 97 KKYQTPPHQNFEDLERKYWKNRIYN--SPIYGADISGSLFDENTK--------------Q 140
Query: 197 WNMRGVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKT 256
WN+ + + L + I GV +P +Y M + FAWH ED DL+S+NYLH+G KT
Sbjct: 141 WNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKT 200
Query: 257 WYGVPMEAANAFEEVVRVHGYGEEINPLVTF---ATLGEKTTMISPEVFVGAGVPCCRLV 313
WY VP E E + R E+ P + A L K +ISP V G+P R+
Sbjct: 201 WYVVPPEHGQRLERLAR------ELFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRIT 254
Query: 314 QNAGEFVVTFPRAYHMGFSHGFNCGEAANIATPEWLNIAKDAA 356
Q AGEF+VTFP YH GF+HGFNC EA N ATP W++ K A+
Sbjct: 255 QEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMAS 297
>pdb|2XML|A Chain A, Crystal Structure Of Human Jmjd2c Catalytic Domain
pdb|2XML|B Chain B, Crystal Structure Of Human Jmjd2c Catalytic Domain
Length = 348
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 130/264 (49%), Gaps = 36/264 (13%)
Query: 104 PRPVQKPVWQSGEYYTFQEFETKAKNFEKSYLKKCGNKKAA-----LSALEIESLYWK-A 157
P P+Q+ V +G+ F ++ + K ++ N L ++E YWK
Sbjct: 71 PAPIQQMV--TGQSGLFTQYNIQKKAMTVKEFRQLANSGKYCTPRYLDYEDLERKYWKNL 128
Query: 158 SVDKPFSVEYANDMPGSAFVPVRKIREAVGEGVTVGETPWNMRGVSRAKGSLLRFMKEE- 216
+ P Y D+ GS + EGV WN+ ++ ++L ++EE
Sbjct: 129 TFVAPI---YGADINGSIY----------DEGVD----EWNIARLN----TVLDVVEEEC 167
Query: 217 ---IPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVR 273
I GV +P +Y M + FAWH ED DL+S+NYLH G K+WY +P E E + +
Sbjct: 168 GISIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLAQ 227
Query: 274 VHGYGEEINPLVTFATLGEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSH 333
G+ + A L K T+ISP V G+P ++ Q AGEF++TFP YH GF+H
Sbjct: 228 --GFFPSSSQGCD-AFLRHKMTLISPSVLKKYGIPFDKITQEAGEFMITFPYGYHAGFNH 284
Query: 334 GFNCGEAANIATPEWLNIAKDAAI 357
GFNC E+ N AT W++ K A +
Sbjct: 285 GFNCAESTNFATVRWIDYGKVAKL 308
>pdb|2OQ6|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys9
pdb|2OQ6|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys9
pdb|2OQ7|A Chain A, The Crystal Structure Of Jmjd2a Complexed With Ni And
N-Oxalylglycine
pdb|2OQ7|B Chain B, The Crystal Structure Of Jmjd2a Complexed With Ni And
N-Oxalylglycine
pdb|2OS2|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys36
pdb|2OS2|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys36
pdb|2OT7|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Monomethylated At Lys9
pdb|2OT7|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Monomethylated At Lys9
pdb|2OX0|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Dimethylated At Lys9
pdb|2OX0|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Dimethylated At Lys9
pdb|2VD7|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
Pyridine-2,4-Dicarboxylic Acid
pdb|2VD7|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
Pyridine-2,4-Dicarboxylic Acid
pdb|3NJY|A Chain A, Crystal Structure Of Jmjd2a Complexed With 5-Carboxy-8-
Hydroxyquinoline
pdb|3NJY|B Chain B, Crystal Structure Of Jmjd2a Complexed With 5-Carboxy-8-
Hydroxyquinoline
pdb|2YBP|A Chain A, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBP|B Chain B, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBS|A Chain A, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBS|B Chain B, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|3PDQ|A Chain A, Crystal Structure Of Jmjd2a Complexed With Bipyridyl
Inhibitor
pdb|3PDQ|B Chain B, Crystal Structure Of Jmjd2a Complexed With Bipyridyl
Inhibitor
pdb|2YBK|A Chain A, Jmjd2a Complexed With R-2-Hydroxyglutarate
pdb|2YBK|B Chain B, Jmjd2a Complexed With R-2-Hydroxyglutarate
pdb|3U4S|A Chain A, Histone Lysine Demethylase Jmjd2a In Complex With T11c
Peptide Substrate Crosslinked To N-Oxalyl-D-Cysteine
pdb|3U4S|B Chain B, Histone Lysine Demethylase Jmjd2a In Complex With T11c
Peptide Substrate Crosslinked To N-Oxalyl-D-Cysteine
pdb|3RVH|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|3RVH|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4GD4|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4GD4|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4AI9|A Chain A, Jmjd2a Complexed With Daminozide
pdb|4AI9|B Chain B, Jmjd2a Complexed With Daminozide
Length = 381
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 123/262 (46%), Gaps = 32/262 (12%)
Query: 104 PRPVQKPVWQSGEYYTFQEFETKAKNFEKSYLKKCGNKKAALSAL-----EIESLYWKAS 158
P P+Q+ V +G+ F ++ + K +K N + E+E YWK
Sbjct: 90 PAPIQQLV--TGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNL 147
Query: 159 VDKPFSVEYANDMPGSAFVPVRKIREAVGEGVTVGETPWNMRGVSRAKGSLLRFMKEE-- 216
P Y D+ G+ + + V E WN + R + L KE
Sbjct: 148 TFNP--PIYGADVNGTLY------EKHVDE--------WN---IGRLRTILDLVEKESGI 188
Query: 217 -IPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVH 275
I GV +P +Y M + FAWH ED DL+S+NYLH G K+WY VP E E + +
Sbjct: 189 TIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGF 248
Query: 276 GYGEEINPLVTFATLGEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGF 335
G + A L K T+ISP + G+P ++ Q AGEF++TFP YH GF+HGF
Sbjct: 249 FPG---SAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGF 305
Query: 336 NCGEAANIATPEWLNIAKDAAI 357
NC E+ N AT W+ K A +
Sbjct: 306 NCAESTNFATRRWIEYGKQAVL 327
>pdb|2P5B|A Chain A, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2P5B|B Chain B, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2Q8C|A Chain A, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|2Q8C|B Chain B, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|2Q8D|A Chain A, Crystal Structure Of Jmj2d2a In Ternary Complex With
Histone H3-K36me2 And Succinate
pdb|2Q8D|B Chain B, Crystal Structure Of Jmj2d2a In Ternary Complex With
Histone H3-K36me2 And Succinate
pdb|2Q8E|A Chain A, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
Specific Histone Demethylase
pdb|2Q8E|B Chain B, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
Specific Histone Demethylase
Length = 352
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 123/262 (46%), Gaps = 32/262 (12%)
Query: 104 PRPVQKPVWQSGEYYTFQEFETKAKNFEKSYLKKCGNKKAALSAL-----EIESLYWKAS 158
P P+Q+ V +G+ F ++ + K +K N + E+E YWK
Sbjct: 70 PAPIQQLV--TGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNL 127
Query: 159 VDKPFSVEYANDMPGSAFVPVRKIREAVGEGVTVGETPWNMRGVSRAKGSLLRFMKEE-- 216
P Y D+ G+ + + V E WN + R + L KE
Sbjct: 128 TFNP--PIYGADVNGTLY------EKHVDE--------WN---IGRLRTILDLVEKESGI 168
Query: 217 -IPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVH 275
I GV +P +Y M + FAWH ED DL+S+NYLH G K+WY VP E E + +
Sbjct: 169 TIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGF 228
Query: 276 GYGEEINPLVTFATLGEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGF 335
G + A L K T+ISP + G+P ++ Q AGEF++TFP YH GF+HGF
Sbjct: 229 FPGSAQS---CEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGF 285
Query: 336 NCGEAANIATPEWLNIAKDAAI 357
NC E+ N AT W+ K A +
Sbjct: 286 NCAESTNFATRRWIEYGKQAVL 307
>pdb|2PXJ|A Chain A, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
pdb|2PXJ|B Chain B, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
Length = 347
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 123/262 (46%), Gaps = 32/262 (12%)
Query: 104 PRPVQKPVWQSGEYYTFQEFETKAKNFEKSYLKKCGNKKAALSAL-----EIESLYWKAS 158
P P+Q+ V +G+ F ++ + K +K N + E+E YWK
Sbjct: 67 PAPIQQLV--TGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNL 124
Query: 159 VDKPFSVEYANDMPGSAFVPVRKIREAVGEGVTVGETPWNMRGVSRAKGSLLRFMKEE-- 216
P Y D+ G+ + + V E WN + R + L KE
Sbjct: 125 TFNP--PIYGADVNGTLY------EKHVDE--------WN---IGRLRTILDLVEKESGI 165
Query: 217 -IPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVH 275
I GV +P +Y M + FAWH ED DL+S+NYLH G K+WY VP E E + +
Sbjct: 166 TIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGF 225
Query: 276 GYGEEINPLVTFATLGEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGF 335
G + A L K T+ISP + G+P ++ Q AGEF++TFP YH GF+HGF
Sbjct: 226 FPGSAQS---CEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGF 282
Query: 336 NCGEAANIATPEWLNIAKDAAI 357
NC E+ N AT W+ K A +
Sbjct: 283 NCAESTNFATRRWIEYGKQAVL 304
>pdb|2WWJ|A Chain A, Structure Of Jmjd2a Complexed With Inhibitor 10a
pdb|2WWJ|B Chain B, Structure Of Jmjd2a Complexed With Inhibitor 10a
Length = 348
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 123/262 (46%), Gaps = 32/262 (12%)
Query: 104 PRPVQKPVWQSGEYYTFQEFETKAKNFEKSYLKKCGNKKAALSAL-----EIESLYWKAS 158
P P+Q+ V +G+ F ++ + K +K N + E+E YWK
Sbjct: 62 PAPIQQLV--TGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNL 119
Query: 159 VDKPFSVEYANDMPGSAFVPVRKIREAVGEGVTVGETPWNMRGVSRAKGSLLRFMKEE-- 216
P Y D+ G+ + + V E WN + R + L KE
Sbjct: 120 TFNP--PIYGADVNGTLY------EKHVDE--------WN---IGRLRTILDLVEKESGI 160
Query: 217 -IPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVH 275
I GV +P +Y M + FAWH ED DL+S+NYLH G K+WY VP E E + +
Sbjct: 161 TIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGF 220
Query: 276 GYGEEINPLVTFATLGEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGF 335
G + A L K T+ISP + G+P ++ Q AGEF++TFP YH GF+HGF
Sbjct: 221 FPGSAQS---CEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGF 277
Query: 336 NCGEAANIATPEWLNIAKDAAI 357
NC E+ N AT W+ K A +
Sbjct: 278 NCAESTNFATRRWIEYGKQAVL 299
>pdb|2GP3|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a
pdb|2GP3|B Chain B, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a
pdb|2GP5|A Chain A, Crystal Structure Of Catalytic Core Domain Of Jmjd2a
Complexed With Alpha-Ketoglutarate
pdb|2GP5|B Chain B, Crystal Structure Of Catalytic Core Domain Of Jmjd2a
Complexed With Alpha-Ketoglutarate
Length = 349
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 123/262 (46%), Gaps = 32/262 (12%)
Query: 104 PRPVQKPVWQSGEYYTFQEFETKAKNFEKSYLKKCGNKKAALSAL-----EIESLYWKAS 158
P P+Q+ V +G+ F ++ + K +K N + E+E YWK
Sbjct: 67 PAPIQQLV--TGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNL 124
Query: 159 VDKPFSVEYANDMPGSAFVPVRKIREAVGEGVTVGETPWNMRGVSRAKGSLLRFMKEE-- 216
P Y D+ G+ + + V E WN + R + L KE
Sbjct: 125 TFNP--PIYGADVNGTLY------EKHVDE--------WN---IGRLRTILDLVEKESGI 165
Query: 217 -IPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVH 275
I GV +P +Y M + FAWH ED DL+S+NYLH G K+WY VP E E + +
Sbjct: 166 TIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGF 225
Query: 276 GYGEEINPLVTFATLGEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGF 335
G + A L K T+ISP + G+P ++ Q AGEF++TFP YH GF+HGF
Sbjct: 226 FPGSAQS---CEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGF 282
Query: 336 NCGEAANIATPEWLNIAKDAAI 357
NC E+ N AT W+ K A +
Sbjct: 283 NCAESTNFATRRWIEYGKQAVL 304
>pdb|3OPT|A Chain A, Crystal Structure Of The Rph1 Catalytic Core With
A-Ketoglutarate
pdb|3OPW|A Chain A, Crystal Structure Of The Rph1 Catalytic Core
Length = 373
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 106/208 (50%), Gaps = 25/208 (12%)
Query: 150 IESLYWKA-SVDKPFSVEYANDMPGSAFVPVRKIREAVGEGVTVGETPWNMRGVSRAKGS 208
+E YWK + P Y D PGS F EG+ V WN+ + +
Sbjct: 168 LEEYYWKTLNFTTPM---YGADTPGSIF----------PEGLNV----WNVAKLP----N 206
Query: 209 LLRFMKEEIPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAF 268
+L M+ ++PGV +Y + + F+WH ED DL+S+NY+H GA K WY +P E F
Sbjct: 207 ILDHMETKVPGVNDSYLYAGLWKASFSWHLEDQDLYSINYIHFGAPKQWYSIPQEDRFKF 266
Query: 269 EEVVRVHGYGEEINPLVTFATLGEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYH 328
+ ++ + EE F L K + SP++ G+ C +V + GEF++T+P YH
Sbjct: 267 YKFMQ-EQFPEEAKNCPEF--LRHKMFLASPKLLQENGIRCNEIVHHEGEFMITYPYGYH 323
Query: 329 MGFSHGFNCGEAANIATPEWLNIAKDAA 356
GF++G+N E+ N A EWL I K A
Sbjct: 324 AGFNYGYNLAESVNFALEEWLPIGKKAG 351
>pdb|3OO3|A Chain A, Crystal Structure Of The Orf6 (Cyp165d3) Monooxygenase
Involved In Teicoplanin Biosynthesis
Length = 384
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 266 NAFEEVVRVHGYGEEINPLVTFATLGEKTTMISPEVFVGAGVPCCRLVQN---AGEFVVT 322
+A EEV+R E P V A + M ++ G + C L N F +T
Sbjct: 261 SATEEVLRHASIVEAPAPRVALADV----RMAGRDIHAGDVLTCSMLATNRAPGDRFDIT 316
Query: 323 FPRAYHMGFSHGFN 336
+A HM F HG +
Sbjct: 317 REKATHMAFGHGIH 330
>pdb|3O1A|A Chain A, Structure Of Oxye (Cyp165d3), A Cytochrome P450 Involved
In Teicoplanin Biosynthesis
Length = 417
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 266 NAFEEVVRVHGYGEEINPLVTFATLGEKTTMISPEVFVGAGVPCCRLVQN---AGEFVVT 322
+A EEV+R E P V A + M ++ G + C L N F +T
Sbjct: 294 SATEEVLRHASIVEAPAPRVALADV----RMAGRDIHAGDVLTCSMLATNRAPGDRFDIT 349
Query: 323 FPRAYHMGFSHGFN 336
+A HM F HG +
Sbjct: 350 REKATHMAFGHGIH 363
>pdb|1O94|D Chain D, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|F Chain F, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|D Chain D, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|F Chain F, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O96|B Chain B, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|D Chain D, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|F Chain F, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|Z Chain Z, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O97|D Chain D, Structure Of Electron Transferring Flavoprotein From
Methylophilus Methylotrophus, Recognition Loop Removed
By Limited Proteolysis
Length = 320
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 44/121 (36%), Gaps = 21/121 (17%)
Query: 206 KGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHAED-----HDLHSLNYLHMGASKTWYGV 260
KGS + F P V+ A + + A H H + SL Y ASKT YG
Sbjct: 64 KGSSIDF---------DPDVFEASVSALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGF 114
Query: 261 PMEA----ANAFEEVVRVHGYGEEINPLVTFATLGEKTTMISPEVFV---GAGVPCCRLV 313
+ E V GY +++N V F I P VF GAG P V
Sbjct: 115 ATDVYIVEYQGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVFKPLEGAGSPVVSNV 174
Query: 314 Q 314
Sbjct: 175 D 175
>pdb|3CLU|D Chain D, Crystal Structure Of The R236k Mutant From Methylophilus
Methylotrophus Etf
Length = 321
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 44/121 (36%), Gaps = 21/121 (17%)
Query: 206 KGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHAED-----HDLHSLNYLHMGASKTWYGV 260
KGS + F P V+ A + + A H H + SL Y ASKT YG
Sbjct: 65 KGSSIDF---------DPDVFEASVSALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGF 115
Query: 261 PMEA----ANAFEEVVRVHGYGEEINPLVTFATLGEKTTMISPEVFV---GAGVPCCRLV 313
+ E V GY +++N V F I P VF GAG P V
Sbjct: 116 ATDVYIVEYQGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVFKPLEGAGSPVVSNV 175
Query: 314 Q 314
Sbjct: 176 D 176
>pdb|3CLT|D Chain D, Crystal Structure Of The R236e Mutant Of Methylophilus
Methylotrophus Etf
Length = 321
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 44/121 (36%), Gaps = 21/121 (17%)
Query: 206 KGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHAED-----HDLHSLNYLHMGASKTWYGV 260
KGS + F P V+ A + + A H H + SL Y ASKT YG
Sbjct: 65 KGSSIDF---------DPDVFEASVSALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGF 115
Query: 261 PMEA----ANAFEEVVRVHGYGEEINPLVTFATLGEKTTMISPEVFV---GAGVPCCRLV 313
+ E V GY +++N V F I P VF GAG P V
Sbjct: 116 ATDVYIVEYQGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVFKPLEGAGSPVVSNV 175
Query: 314 Q 314
Sbjct: 176 D 176
>pdb|3CLR|D Chain D, Crystal Structure Of The R236a Etf Mutant From M.
Methylotrophus
Length = 321
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 44/121 (36%), Gaps = 21/121 (17%)
Query: 206 KGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHAED-----HDLHSLNYLHMGASKTWYGV 260
KGS + F P V+ A + + A H H + SL Y ASKT YG
Sbjct: 65 KGSSIDF---------DPDVFEASVSALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGF 115
Query: 261 PMEA----ANAFEEVVRVHGYGEEINPLVTFATLGEKTTMISPEVFV---GAGVPCCRLV 313
+ E V GY +++N V F I P VF GAG P V
Sbjct: 116 ATDVYIVEYQGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVFKPLEGAGSPVVSNV 175
Query: 314 Q 314
Sbjct: 176 D 176
>pdb|3CLS|D Chain D, Crystal Structure Of The R236c Mutant Of Etf From
Methylophilus Methylotrophus
Length = 321
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 44/121 (36%), Gaps = 21/121 (17%)
Query: 206 KGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHAED-----HDLHSLNYLHMGASKTWYGV 260
KGS + F P V+ A + + A H H + SL Y ASKT YG
Sbjct: 65 KGSSIDF---------DPDVFEASVSALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGF 115
Query: 261 PMEA----ANAFEEVVRVHGYGEEINPLVTFATLGEKTTMISPEVFV---GAGVPCCRLV 313
+ E V GY +++N V F I P VF GAG P V
Sbjct: 116 ATDVYIVEYQGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVFKPLEGAGSPVVSNV 175
Query: 314 Q 314
Sbjct: 176 D 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,223,559
Number of Sequences: 62578
Number of extensions: 532542
Number of successful extensions: 1189
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1147
Number of HSP's gapped (non-prelim): 30
length of query: 466
length of database: 14,973,337
effective HSP length: 102
effective length of query: 364
effective length of database: 8,590,381
effective search space: 3126898684
effective search space used: 3126898684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)