Query 039624
Match_columns 466
No_of_seqs 280 out of 693
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 11:31:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0958 DNA damage-responsive 100.0 6.5E-79 1.4E-83 646.2 18.1 294 14-359 9-308 (690)
2 KOG1246 DNA-binding protein ju 100.0 2.3E-52 4.9E-57 473.9 18.3 359 20-383 90-488 (904)
3 PF02373 JmjC: JmjC domain, hy 100.0 2.8E-34 6.1E-39 246.9 7.6 114 224-343 1-114 (114)
4 smart00545 JmjN Small domain f 99.8 5.2E-20 1.1E-24 133.4 4.1 42 19-60 1-42 (42)
5 PF02375 JmjN: jmjN domain; I 99.7 4.5E-17 9.8E-22 112.8 3.3 34 21-54 1-34 (34)
6 smart00558 JmjC A domain famil 99.4 1.7E-13 3.6E-18 105.3 4.5 56 196-254 2-57 (57)
7 KOG1246 DNA-binding protein ju 98.0 4.6E-06 1E-10 96.3 3.7 176 194-380 604-788 (904)
8 KOG2131 Uncharacterized conser 96.6 0.0036 7.9E-08 64.7 5.7 104 224-346 201-304 (427)
9 PF13621 Cupin_8: Cupin-like d 96.0 0.018 3.8E-07 55.4 6.9 114 222-346 132-248 (251)
10 KOG2130 Phosphatidylserine-spe 93.1 0.052 1.1E-06 55.5 2.0 135 205-349 164-302 (407)
11 KOG1356 Putative transcription 91.6 0.2 4.2E-06 57.0 4.4 97 255-353 740-842 (889)
12 PF08007 Cupin_4: Cupin superf 84.3 3.8 8.3E-05 42.1 8.0 106 219-352 112-218 (319)
13 COG2461 Uncharacterized conser 42.7 14 0.00031 39.2 1.8 44 20-65 200-243 (409)
14 COG1791 Uncharacterized conser 30.2 38 0.00082 32.3 2.3 41 306-351 114-161 (181)
15 PF13601 HTH_34: Winged helix 30.1 70 0.0015 26.2 3.6 37 238-274 38-75 (80)
No 1
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair]
Probab=100.00 E-value=6.5e-79 Score=646.18 Aligned_cols=294 Identities=36% Similarity=0.620 Sum_probs=243.1
Q ss_pred cCCCCCCceecCChhhcCChHHHHHHHHh-hhcccCeeeecCCCCCCCcchhhHHHHHH-HHHHhhhcCCCCCCCCCccc
Q 039624 14 LKTLPVAPEFHPTLAEFQDPIAYIFKIEK-EASQYGICKIVPPVPPPPKKTAITFLNRS-LAQRAAATGGATSSSGPTFT 91 (466)
Q Consensus 14 l~~~p~~pvf~PT~eEF~dp~~yi~~i~~-~a~~~GI~KIvPP~~w~p~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~F~ 91 (466)
+.....+||||||+|||+||.+||++|++ +|+++||+|||||++|+|+.. ++++++. +.++..+++. +. +..|+
T Consensus 9 i~ps~~I~tF~PtmeEF~dF~~yi~~IEs~G~h~aGlaKVipPkeWk~r~~-~~di~di~I~~PiqQ~v~--g~-~G~F~ 84 (690)
T KOG0958|consen 9 INPSDGIPTFYPTMEEFADFSAYIAYIESQGAHRAGLAKVIPPKEWKPRLM-YDDIDDIKIPAPIQQVVT--GQ-GGLFT 84 (690)
T ss_pred cCCCCCcceeCcCHHHHHhHHHHHHHHHhccchhcCeeeeeCCccCCcccc-cCchhheecChhHHHHhh--cc-CceEE
Confidence 44477899999999999999999999998 566799999999999999875 3344332 1111111110 11 11221
Q ss_pred ceeccccccCCCCCCCCCcccccCCcccHHHHHHHHHHHHHHHHHhcCCCCC-CCChHHHHHHhhhhcC-CCCcceeecC
Q 039624 92 TRQQQIGFCPRKPRPVQKPVWQSGEYYTFQEFETKAKNFEKSYLKKCGNKKA-ALSALEIESLYWKASV-DKPFSVEYAN 169 (466)
Q Consensus 92 tR~Q~l~~~~~~~~~~~~~~~~sg~~ytl~~F~~~a~~f~~~~~~~~~~~~~-~~~~~~vE~~fW~~~~-~~~v~V~Yga 169 (466)
||++ |..+.||++||+++|.. .. +. +++ +...+|+|++|||++. ..| .|||
T Consensus 85 --~~Ni---------------~~~kam~v~q~r~lAns--~~----y~-tpr~~~d~~dle~kYWKnltf~~P---iYGa 137 (690)
T KOG0958|consen 85 --QYNI---------------QDKKAMTVRQFRDLANS--DK----YC-TPRGSQDFEDLEQKYWKNLTFDSP---IYGA 137 (690)
T ss_pred --Eeeh---------------hhccccChhhhhhhhhh--cc----cC-CCcccccHHHHHHHHHhcccCCCC---cccc
Confidence 1111 23568999999999975 21 22 234 7889999999999986 344 7999
Q ss_pred CCCCCccCCCcccccccCCCcccCCCCccCCCCCCCCCCchh--hhcCCCCCCccceeeeecccCcccceeCCCCceeeE
Q 039624 170 DMPGSAFVPVRKIREAVGEGVTVGETPWNMRGVSRAKGSLLR--FMKEEIPGVTSPMVYIAMLFSWFAWHAEDHDLHSLN 247 (466)
Q Consensus 170 Dl~GS~F~~~~~~~~~~~~~~~~~~~~WNL~nlp~~~~SlL~--~l~~~i~Gv~~P~lYiGm~~S~f~WH~ED~~l~SIN 247 (466)
|+.||+|+.. ...||+++|+ .+|+ ..+..|.||||||||+|||+++|+||+||++|||||
T Consensus 138 D~~gSi~~~~--------------~~~WNi~~L~----tild~~~~~~~i~gvNt~yLyfGmwKttFaWHtEdmDLySIN 199 (690)
T KOG0958|consen 138 DINGSIYDED--------------LDEWNIARLD----TILDLEECGIIIEGVNTPYLYFGMWKTTFAWHTEDMDLYSIN 199 (690)
T ss_pred cCCCccCccc--------------cccccccccc----chhchhhcceeecccCccceeeeeeecccccccCCccceeee
Confidence 9999999864 6899999994 6665 667789999999999999999999999999999999
Q ss_pred eeeeCCceeEEecChhhHHHHHHHHHHcCCCCCCCchhhhhhhcCCccccChhhHhcCCCCcceeeccCCcEEEEcCCcc
Q 039624 248 YLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINPLVTFATLGEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAY 327 (466)
Q Consensus 248 Y~H~GapK~WY~VP~~~~~kfE~l~~~~~~~~~~~~~~~~~~L~h~~~~isP~~L~~~GIpv~r~vQ~pGEfVvtfP~aY 327 (466)
|+|||+||+||+||+++.++||+++.+. +.++. ..|.+|||||++++||.+|+++|||+++++|++||||||||++|
T Consensus 200 yLHFGaPK~WYaIP~eh~~rfekla~~~-fp~~~--~~C~aFLRHK~~LiSP~~LkqnGIpfn~ivqeagEFmITFPygy 276 (690)
T KOG0958|consen 200 YLHFGAPKQWYAIPPEHGDRFEKLASEL-FPDSS--QGCPAFLRHKMTLISPSVLKQNGIPFNRIVQEAGEFMITFPYGY 276 (690)
T ss_pred eeecCCCcceeecCHHHHHHHHHHHHhh-CCccc--cCCHHHHhhcccccCHHHHHHcCCCcceeeecCCcEEEecCccc
Confidence 9999999999999999999999999986 33332 35889999999999999999999999999999999999999999
Q ss_pred eeeeccccceehhhcccCchhHHHHHHHHHHH
Q 039624 328 HMGFSHGFNCGEAANIATPEWLNIAKDAAIRR 359 (466)
Q Consensus 328 H~gfn~Gfn~aEavNFA~~~Wl~~g~~a~~~~ 359 (466)
|+|||+||||+|++|||+++|++||+.|..|.
T Consensus 277 HaGFN~GfN~aES~nFat~Rwi~YgK~a~~C~ 308 (690)
T KOG0958|consen 277 HAGFNHGFNCAESTNFATPRWIDYGKQALLCS 308 (690)
T ss_pred ccccccchhhhhhhcccchhhhhhcccccccc
Confidence 99999999999999999999999999998773
No 2
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=100.00 E-value=2.3e-52 Score=473.86 Aligned_cols=359 Identities=35% Similarity=0.573 Sum_probs=274.0
Q ss_pred CceecCChhhcCChHHHHHHHHhhhcccCeeeecCCCCCCCcchhhH--H-HHHHHHHH---hhh---cCCC-CCCCC--
Q 039624 20 APEFHPTLAEFQDPIAYIFKIEKEASQYGICKIVPPVPPPPKKTAIT--F-LNRSLAQR---AAA---TGGA-TSSSG-- 87 (466)
Q Consensus 20 ~pvf~PT~eEF~dp~~yi~~i~~~a~~~GI~KIvPP~~w~p~~~~~~--~-l~~~~~~~---~~~---~~~~-~~~~~-- 87 (466)
++.+.+....|.+...|+.++...++.+|+|.++||..|.+....-. + ....+... ... ...+ ++...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 169 (904)
T KOG1246|consen 90 KPLLLSIPKNFKDKLLYISKLKLRAEFYGICEKLPPPTSKPKEPLKGKQNWFSSGFDQREVEFIDYPQCNTCSKGKEEKL 169 (904)
T ss_pred cccccccCccccchhhccccccccccccccccccCCcccCCCCcCCcccccccCCCCCcccccccchhhhccccCCCccc
Confidence 46688888999999999999999999999999999988776442100 0 00000000 000 0000 00000
Q ss_pred ----Cccc-----------ceeccccc-cCCC-----CCCCCCcccccCC-cccHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 039624 88 ----PTFT-----------TRQQQIGF-CPRK-----PRPVQKPVWQSGE-YYTFQEFETKAKNFEKSYLKKCGNKKAAL 145 (466)
Q Consensus 88 ----~~F~-----------tR~Q~l~~-~~~~-----~~~~~~~~~~sg~-~ytl~~F~~~a~~f~~~~~~~~~~~~~~~ 145 (466)
.... +|.-.... +... ........|..|. .||++.|.++|+.|+..||.+.. ....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~yt~~~f~~~~~~~~~~~~~~~~--~~~~ 247 (904)
T KOG1246|consen 170 LLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYKFGFEQGSREYTLPKFEEYADNFKKDYFPKSK--NSPD 247 (904)
T ss_pred eecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccccCcCCCCCccccchhhhHhhhhhcccccccc--CCCC
Confidence 0000 00000000 0000 0001223344444 89999999999999999987643 2223
Q ss_pred ChHHHHHHhhhhcCC--CCcceeecCCCC----CCccCCCcccccccCCCcccCCCCccCCCCCCCCCCchhhhcCCCCC
Q 039624 146 SALEIESLYWKASVD--KPFSVEYANDMP----GSAFVPVRKIREAVGEGVTVGETPWNMRGVSRAKGSLLRFMKEEIPG 219 (466)
Q Consensus 146 ~~~~vE~~fW~~~~~--~~v~V~YgaDl~----GS~F~~~~~~~~~~~~~~~~~~~~WNL~nlp~~~~SlL~~l~~~i~G 219 (466)
+.+++|++||+++.. ..++|.||+|+. ||+|+.....+........|..++|||+++|++++|+|++.+.+|+|
T Consensus 248 ~~~~vE~e~w~~v~~~~~~~~~~~g~d~~~~~~~s~~~~~~~~~~~~~~~~~y~~s~wnL~~i~~~~~svl~~~~~di~g 327 (904)
T KOG1246|consen 248 STEDVEKEFWRLVASNLESVEVLYGADLSTKEFGSGFPKSASGPLLGSEAEKYSNSGWNLNNIPRLEGSVLSHIDTDISG 327 (904)
T ss_pred chHHHHHHHHHhhcccccceeeeeccchhhccccccccccCCCCCCCcchhhhccCcccccccccCCccccccccCCcCc
Confidence 367899999999753 457889999995 77777653322111233569999999999999999999999999999
Q ss_pred CccceeeeecccCcccceeCCCCceeeEeeeeCCceeEEecChhhHHHHHHHHHHcCCCCCCCchhhhhhhcCCccccCh
Q 039624 220 VTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINPLVTFATLGEKTTMISP 299 (466)
Q Consensus 220 v~~P~lYiGm~~S~f~WH~ED~~l~SINY~H~GapK~WY~VP~~~~~kfE~l~~~~~~~~~~~~~~~~~~L~h~~~~isP 299 (466)
+++||+|+||+||+||||+|||.+||+||+|+|+||+||+||++++++||++++...++-. ..+.+.+++..++++|
T Consensus 328 ~~~p~l~~gm~fs~~~wh~ed~~~~slny~h~g~pk~wy~v~~~~ae~~e~~~~~~~p~~~---~~~pd~~~~~~~~~~p 404 (904)
T KOG1246|consen 328 VTVPWLYIGMCFSTFCWHVEDHSLYSLNYLHLGEPKTWYSVPGSAAEKFEKAMNKLSPGLF---IEQPDLLHALVTLMSP 404 (904)
T ss_pred cccccccccccccccccccCCccccccchhhcCCceEEEecCcchHHHHHHHHHhhCCccc---ccCcccccccccccCc
Confidence 9999999999999999999999999999999999999999999999999999998644321 1234677788999999
Q ss_pred hhHhcCCCCcceeeccCCcEEEEcCCcceeeeccccceehhhcccCchhHHHHHHHHHHHHhcCCCCccchHHHHHHHHH
Q 039624 300 EVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANIATPEWLNIAKDAAIRRASINYPPMVSHFQLLYDLAI 379 (466)
Q Consensus 300 ~~L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEavNFA~~~Wl~~g~~a~~~~~~~~~~~~~~~~~Ll~~ia~ 379 (466)
..|.++|||+++++|+|||||||||++||+|||+||||+|+|||||.+||++|+.++..|....+.++|||+.|+..+|.
T Consensus 405 ~~l~~~gvpv~~~~q~~ge~vitfP~~Y~~g~~~gf~~~e~vn~ap~dwl~~gr~~~~~~~~~~~~~lfs~~~l~~~~~~ 484 (904)
T KOG1246|consen 405 NFLTDEGVPVYRTVQNPGEFVITFPRAYHAGFNCGFNFAEAVNFAPSDWLPVGRGAAEAYSLLLRLSLFSHDELALLNAE 484 (904)
T ss_pred chhhcCCCCceecccCCCCEeecCCCeeeecccccccHHHhcccCCcchhHHHHHHHHHHHhhccCCccCHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999998888999999999999887
Q ss_pred Hhhc
Q 039624 380 AMHS 383 (466)
Q Consensus 380 ~~~~ 383 (466)
....
T Consensus 485 ~~~~ 488 (904)
T KOG1246|consen 485 NPVK 488 (904)
T ss_pred cchh
Confidence 6443
No 3
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=100.00 E-value=2.8e-34 Score=246.89 Aligned_cols=114 Identities=44% Similarity=0.688 Sum_probs=97.9
Q ss_pred eeeeecccCcccceeCCCCceeeEeeeeCCceeEEecChhhHHHHHHHHHHcCCCCCCCchhhhhhhcCCccccChhhHh
Q 039624 224 MVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINPLVTFATLGEKTTMISPEVFV 303 (466)
Q Consensus 224 ~lYiGm~~S~f~WH~ED~~l~SINY~H~GapK~WY~VP~~~~~kfE~l~~~~~~~~~~~~~~~~~~L~h~~~~isP~~L~ 303 (466)
|||+||.+|+++||+||+.++||||+|+|++|+||+||++++++|+++++... ...+.+++.|+..++.|+.|+
T Consensus 1 ~~~ig~~~s~t~~H~e~~~~~sv~~~~~g~~k~W~~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~p~~l~ 74 (114)
T PF02373_consen 1 WLYIGMKGSYTPWHIEDNGLSSVNYHHFGGSKVWYIVPPEDADKFEKFLRSKE------SQNCPQFLDHKNIFVSPEQLK 74 (114)
T ss_dssp EEEEE-TTEEEEEEE-GGG-EEEEEEEEESEEEEEEE-GGGHHHHHHHHHHHH------HHHSTTGGCTGGEEEGHHHHH
T ss_pred CEEEeCCCcCCCcEecCCCCceeeeeccCcceEeEEechhhhhhHHHHHhhcc------cccccccccccccccceeeee
Confidence 79999999999999999999999999999999999999999999999998751 123446688999999999999
Q ss_pred cCCCCcceeeccCCcEEEEcCCcceeeeccccceehhhcc
Q 039624 304 GAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANI 343 (466)
Q Consensus 304 ~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEavNF 343 (466)
++|||+++++|+|||+|||+||+||+++|.|+|++|||||
T Consensus 75 ~~gi~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 75 KAGIPVYRFVQKPGEFVFIPPGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp HTTS--EEEEEETT-EEEE-TT-EEEEEESSSEEEEEEEE
T ss_pred ccCcccccceECCCCEEEECCCceEEEEeCCceEEEEecC
Confidence 9999999999999999999999999999999999999998
No 4
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=99.79 E-value=5.2e-20 Score=133.44 Aligned_cols=42 Identities=55% Similarity=1.012 Sum_probs=40.8
Q ss_pred CCceecCChhhcCChHHHHHHHHhhhcccCeeeecCCCCCCC
Q 039624 19 VAPEFHPTLAEFQDPIAYIFKIEKEASQYGICKIVPPVPPPP 60 (466)
Q Consensus 19 ~~pvf~PT~eEF~dp~~yi~~i~~~a~~~GI~KIvPP~~w~p 60 (466)
+||||+||+|||+||++||++|++.|++|||||||||.+|+|
T Consensus 1 eiPvf~Pt~eEF~Dp~~yi~~i~~~~~~yGi~KIvPP~~w~p 42 (42)
T smart00545 1 EIPVFYPTMEEFKDPLAYISKIRPQAEKYGICKVVPPKSWKP 42 (42)
T ss_pred CCCeEcCCHHHHHCHHHHHHHHHHHHhhCCEEEEECCCCCCc
Confidence 689999999999999999999999999999999999999986
No 5
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.66 E-value=4.5e-17 Score=112.84 Aligned_cols=34 Identities=65% Similarity=1.189 Sum_probs=27.7
Q ss_pred ceecCChhhcCChHHHHHHHHhhhcccCeeeecC
Q 039624 21 PEFHPTLAEFQDPIAYIFKIEKEASQYGICKIVP 54 (466)
Q Consensus 21 pvf~PT~eEF~dp~~yi~~i~~~a~~~GI~KIvP 54 (466)
||||||+|||+||++||++|++.|++||||||||
T Consensus 1 Pvf~Pt~eEF~dp~~yi~~i~~~g~~~Gi~KIvP 34 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIKYISSIEPEGEKYGICKIVP 34 (34)
T ss_dssp EEE---HHHHS-HHHHHHHHHHTTGGGSEEEE--
T ss_pred CcccCCHHHHhCHHHHHHHHHHHHHHCCEEEecC
Confidence 8999999999999999999999999999999998
No 6
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=99.41 E-value=1.7e-13 Score=105.26 Aligned_cols=56 Identities=39% Similarity=0.570 Sum_probs=53.6
Q ss_pred CccCCCCCCCCCCchhhhcCCCCCCccceeeeecccCcccceeCCCCceeeEeeeeCCc
Q 039624 196 PWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGAS 254 (466)
Q Consensus 196 ~WNL~nlp~~~~SlL~~l~~~i~Gv~~P~lYiGm~~S~f~WH~ED~~l~SINY~H~Gap 254 (466)
.||++++|. ++++|+++..+++|++++|+|+||++|+|+||+|++++ +||+|.|+.
T Consensus 2 ~~~l~~lP~-~~~ll~~~~~~~~~~~~~~~~~G~~~s~t~~H~d~~~~--~n~~~~~~~ 57 (57)
T smart00558 2 LNNLAKLPF-KLNLLSDLPEDILGPDVPYLYMGMAGSVTPWHIDDYDL--VNYLHQGAG 57 (57)
T ss_pred cchhhhCCC-cchHHHHCCcccCCCCcceEEEeCCCCccceeEcCCCe--EEEEEecCC
Confidence 699999999 89999999999999999999999999999999999999 999999963
No 7
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=97.96 E-value=4.6e-06 Score=96.32 Aligned_cols=176 Identities=21% Similarity=0.266 Sum_probs=139.8
Q ss_pred CCCccCCCCCCCC-----C-CchhhhcCCCCCCccceeeeecccCcccceeCCCCceeeEeeeeCCceeEEecChhhHHH
Q 039624 194 ETPWNMRGVSRAK-----G-SLLRFMKEEIPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANA 267 (466)
Q Consensus 194 ~~~WNL~nlp~~~-----~-SlL~~l~~~i~Gv~~P~lYiGm~~S~f~WH~ED~~l~SINY~H~GapK~WY~VP~~~~~k 267 (466)
..+|.....-.++ + +++.++.+.+-||++..+|.....+.+.-|.|+..+.|+|.++..+.+.|++|+.++...
T Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~~~~n~~~~~~k~~~~rt~~~~~n~~~~s~~~n~~p~~~~~~~v~~~~~~~ 683 (904)
T KOG1246|consen 604 KLPWFGRVDGALPSLGFRGANLLEHAGEKILGMNTVQCYMKVPGSRTTAHQENSALASININLGPGDCVWFAVPLEYWGV 683 (904)
T ss_pred cchhhhhhhhhhcccccCCcchHHHHHHHhhcccccceeeccccccchhHHHHHHHhhhhccCCcccceeeecccchhHH
Confidence 5677765543322 4 888999999999999999999999999999999999999999987789999999999999
Q ss_pred HHHHHHHcCCCCCCCchhhhhhhcCCcccc-ChhhHhcCCCCcceeeccCCcEEEEcCCcceeeeccccceehhhcccCc
Q 039624 268 FEEVVRVHGYGEEINPLVTFATLGEKTTMI-SPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANIATP 346 (466)
Q Consensus 268 fE~l~~~~~~~~~~~~~~~~~~L~h~~~~i-sP~~L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEavNFA~~ 346 (466)
.++.+.++.-. . + -...+- +-..|...+|++++.+|++|+++.++.+.||+...+|+..+.++|.+..
T Consensus 684 ~~~~~~~~~~~----~------~-~~~~w~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~v~~~ 752 (904)
T KOG1246|consen 684 VEDACEKHNLK----Y------S-DSSVWPSSEEELLNLVIPVQKFIQKAGDLVYVGNGTVHWVQVLGFCINVSWNVSES 752 (904)
T ss_pred HHHHHhhcccc----c------c-chhccchhhHHHHhccchHHHHHhccccccccCCceEEEeeecCccccceeccccc
Confidence 99888765211 0 0 112233 5567889999999999999999999999999999999999999999998
Q ss_pred hhHHHHHH--HHHHHHhcCCCCccchHHHHHHHHHH
Q 039624 347 EWLNIAKD--AAIRRASINYPPMVSHFQLLYDLAIA 380 (466)
Q Consensus 347 ~Wl~~g~~--a~~~~~~~~~~~~~~~~~Ll~~ia~~ 380 (466)
.--++... ...+.........+++.-+-|++|+.
T Consensus 753 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (904)
T KOG1246|consen 753 TFAQLALALFRHDHNIESKHPSSVPMSFKVWEMAEK 788 (904)
T ss_pred chhhhhcchhhhhhhhhccCcccchhhhhhhhHhhc
Confidence 76554332 22223334556677777778888875
No 8
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=96.55 E-value=0.0036 Score=64.73 Aligned_cols=104 Identities=19% Similarity=0.122 Sum_probs=77.5
Q ss_pred eeeeecccCcccceeCCCCceeeEeeeeCCceeEEecChhhHHHHHHHHHHcCCCCCCCchhhhhhhcCCccccChhhHh
Q 039624 224 MVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINPLVTFATLGEKTTMISPEVFV 303 (466)
Q Consensus 224 ~lYiGm~~S~f~WH~ED~~l~SINY~H~GapK~WY~VP~~~~~kfE~l~~~~~~~~~~~~~~~~~~L~h~~~~isP~~L~ 303 (466)
-.|.|-.+|++..|.+=-.-+|-.-+.+| -|.|..+||.+..++....-+.. .-+.-..|.
T Consensus 201 Fvy~Gp~gSwtp~HaDVf~s~swS~nicG-~KrWl~~pP~qe~~l~dr~gnlp------------------~~~~~~~ld 261 (427)
T KOG2131|consen 201 FVYAGPAGSWTPFHADVFHSPSWSVNICG-RKRWLLYPPEQEQTLADRYGNLP------------------LPSWITKLD 261 (427)
T ss_pred EEEeccCCCCCccchhhhcCCcceeeeec-ceeEEEeChHHhhhhhhhccCcC------------------Ccccccccc
Confidence 47889999999999776655555556677 79999999999665544332211 112223456
Q ss_pred cCCCCcceeeccCCcEEEEcCCcceeeeccccceehhhcccCc
Q 039624 304 GAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANIATP 346 (466)
Q Consensus 304 ~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEavNFA~~ 346 (466)
....+...+.|+|||.|++--|=||.+.|.|-.++..=|..-.
T Consensus 262 ~~~~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~N~ 304 (427)
T KOG2131|consen 262 LFRGPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWCNA 304 (427)
T ss_pred ccccchhhhhccCCceeeccCccccccccccceeeeccccccc
Confidence 6777789999999999999999999999999988877665443
No 9
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=95.99 E-value=0.018 Score=55.38 Aligned_cols=114 Identities=16% Similarity=0.121 Sum_probs=65.7
Q ss_pred cceeeeecccCcccceeCCCCceeeEeeeeCCceeEEecChhhHHHHHHHHHHcCCCCCCCchhhhhhhcCCccccChhh
Q 039624 222 SPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINPLVTFATLGEKTTMISPEV 301 (466)
Q Consensus 222 ~P~lYiGm~~S~f~WH~ED~~l~SINY~H~GapK~WY~VP~~~~~kfE~l~~~~~~~~~~~~~~~~~~L~h~~~~isP~~ 301 (466)
..+|++|..+|.+.+|.+. ..+++-+-.| .|.|+-+||++...+... ............+. .....-..|..
T Consensus 132 ~~~l~ig~~gs~t~lH~D~--~~n~~~~i~G-~K~~~L~pP~~~~~l~~~----~~~~~~~~~~~~d~-~~~d~~~~p~~ 203 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP--SHNLLAQIRG-RKRWILFPPDDSPNLYPR----PDSHGGTVFSWVDP-DNPDLERFPKF 203 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S--SEEEEEEEES-EEEEEEE-GGGGGGCTBE----TTTST-TCBBSS-T-TS--TTT-CGG
T ss_pred ccEEEEeCCCceeeeeECc--hhhhhhccCC-CEEEEEECCccccccccc----eecccccceeeeec-cChhhhhhhhh
Confidence 5679999999999999987 4566667778 599999999986533110 00000000000000 00000112221
Q ss_pred HhcCCCCcceeeccCCcEEEEcCCcceeeecc---ccceehhhcccCc
Q 039624 302 FVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSH---GFNCGEAANIATP 346 (466)
Q Consensus 302 L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~---Gfn~aEavNFA~~ 346 (466)
. ..+.+.++++|||.+++=+|-||.+.|. ++|++..++|-+.
T Consensus 204 -~--~~~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~ 248 (251)
T PF13621_consen 204 -R--KAPPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTP 248 (251)
T ss_dssp -G--G--EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS
T ss_pred -c--cCceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEeccc
Confidence 1 2388999999999999999999999999 4677766666543
No 10
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=93.05 E-value=0.052 Score=55.52 Aligned_cols=135 Identities=19% Similarity=0.211 Sum_probs=89.2
Q ss_pred CCCCchhhhcCC-CCCCccceeeeecccCcccceeCCCCceeeEeeeeCCceeEEecChhhHHHHHHHHHHcCCCCCCCc
Q 039624 205 AKGSLLRFMKEE-IPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINP 283 (466)
Q Consensus 205 ~~~SlL~~l~~~-i~Gv~~P~lYiGm~~S~f~WH~ED~~l~SINY~H~GapK~WY~VP~~~~~kfE~l~~~~~~~~~~~~ 283 (466)
....|..+++++ =| --=|+-+|-..|-+.||++...+..-|-+..| -|.|.-+|+..-..+-++....+ + ..+
T Consensus 164 F~dDlF~y~g~e~RP--pyRWfvmGParSGtsiHIDPlgTSAWNtll~G-hKrW~LfPp~~p~~lvkv~~~e~--g-~~~ 237 (407)
T KOG2130|consen 164 FRDDLFQYLGEERRP--PYRWFVMGPARSGTSIHIDPLGTSAWNTLLQG-HKRWVLFPPGTPPELVKVTVDEG--G-KQP 237 (407)
T ss_pred hhHHHHHhcCcccCC--CceeEEecCCCCCceeEECCcchHHHHHHhhc-cceeEEcCCCCCCCceeeccccc--C-CCC
Confidence 346777777643 11 12388899999999999999999999999999 79999999886543333332211 0 111
Q ss_pred hhh---hhhhcCCccccChhhHhcCCCCcceeeccCCcEEEEcCCcceeeeccccceehhhcccCchhH
Q 039624 284 LVT---FATLGEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANIATPEWL 349 (466)
Q Consensus 284 ~~~---~~~L~h~~~~isP~~L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEavNFA~~~Wl 349 (466)
.+. +..+--.+. .|. +-.. -.-..++|.|||-|++--|=+|.+.|.-..+|..-|||...=+
T Consensus 238 de~itwf~~~y~rt~--~Ps-wp~E-~kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf 302 (407)
T KOG2130|consen 238 DEIITWFSTIYPRTQ--LPS-WPDE-YKPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENF 302 (407)
T ss_pred cceechhhhcccccc--CCC-Cccc-cCCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCC
Confidence 111 110000000 010 0011 1233689999999999999999999999999999999986543
No 11
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=91.58 E-value=0.2 Score=57.03 Aligned_cols=97 Identities=15% Similarity=0.091 Sum_probs=72.5
Q ss_pred eeEEecChhhHHHHHHHHHHcCCC--CCCCchhhhhhhcCCccccChh---hHh-cCCCCcceeeccCCcEEEEcCCcce
Q 039624 255 KTWYGVPMEAANAFEEVVRVHGYG--EEINPLVTFATLGEKTTMISPE---VFV-GAGVPCCRLVQNAGEFVVTFPRAYH 328 (466)
Q Consensus 255 K~WY~VP~~~~~kfE~l~~~~~~~--~~~~~~~~~~~L~h~~~~isP~---~L~-~~GIpv~r~vQ~pGEfVvtfP~aYH 328 (466)
-.|=.....++.|++++++++... .+..+ ..+-++...+.+.-. .|+ +.||.-..++|..||.|++-.||-|
T Consensus 740 ALWhIF~~~Dv~KireyL~k~~~E~~~~~~~--v~hPIhDQS~YLd~~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPH 817 (889)
T KOG1356|consen 740 ALWHIFRAQDVPKIREYLRKVCKEQGHEVPK--VHHPIHDQSWYLDRYLRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPH 817 (889)
T ss_pred chhhhhhhcchHHHHHHHHHhhHHhcCCCCc--ccCCCcccceeccHHHHHHHHHHhCCCccchhhcccceEEecCCCcH
Confidence 479899999999999999876311 11100 011123344555443 233 5799999999999999999999999
Q ss_pred eeeccccceehhhcccCchhHHHHH
Q 039624 329 MGFSHGFNCGEAANIATPEWLNIAK 353 (466)
Q Consensus 329 ~gfn~Gfn~aEavNFA~~~Wl~~g~ 353 (466)
.+.|.--++..|..|..|.-+....
T Consensus 818 QVrNLkSCikVa~DFVSPE~v~ec~ 842 (889)
T KOG1356|consen 818 QVRNLKSCIKVAEDFVSPEHVSECF 842 (889)
T ss_pred HhhhhhhHHHHHHhhCChhhHHHHH
Confidence 9999999999999999999887543
No 12
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=84.25 E-value=3.8 Score=42.11 Aligned_cols=106 Identities=18% Similarity=0.260 Sum_probs=67.4
Q ss_pred CCccceeeeeccc-CcccceeCCCCceeeEeeeeCCceeEEecChhhHHHHHHHHHHcCCCCCCCchhhhhhhcCCcccc
Q 039624 219 GVTSPMVYIAMLF-SWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINPLVTFATLGEKTTMI 297 (466)
Q Consensus 219 Gv~~P~lYiGm~~-S~f~WH~ED~~l~SINY~H~GapK~WY~VP~~~~~kfE~l~~~~~~~~~~~~~~~~~~L~h~~~~i 297 (466)
.-....+|++-.. ..|++|..+++..- +..-+.|.|..-++.. ...+ ...+.
T Consensus 112 ~~~~~n~Y~tp~g~~g~~~H~D~~dvfv---lQ~~G~K~W~l~~~~~---------------~~~~-----~~~~~---- 164 (319)
T PF08007_consen 112 CPVGANAYLTPPGSQGFGPHYDDHDVFV---LQLEGRKRWRLYPPPD---------------EPAP-----LYSDQ---- 164 (319)
T ss_dssp S-EEEEEEEETSSBEESECEE-SSEEEE---EEEES-EEEEEE-SCC---------------CTTT-----SSCE-----
T ss_pred cccceEEEecCCCCCCccCEECCcccEE---EECCceeEEEECCCCc---------------cccc-----ccCCC----
Confidence 3455678898888 58999999987666 3455589998877110 0000 00000
Q ss_pred ChhhHhcCCCCcceeeccCCcEEEEcCCcceeeeccccceehhhcccCchhHHHH
Q 039624 298 SPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANIATPEWLNIA 352 (466)
Q Consensus 298 sP~~L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEavNFA~~~Wl~~g 352 (466)
+-...+..-|+..++=+||+.+..-+|.+|.+.+.|.++.-+++|-.+.|.++-
T Consensus 165 -~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~~dl~ 218 (319)
T PF08007_consen 165 -PFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTWADLL 218 (319)
T ss_dssp --TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBHHHHH
T ss_pred -CccccccCceeEEEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCCchhhHH
Confidence 001112235778899999999999999999999999999999999999998864
No 13
>COG2461 Uncharacterized conserved protein [Function unknown]
Probab=42.73 E-value=14 Score=39.20 Aligned_cols=44 Identities=30% Similarity=0.434 Sum_probs=35.0
Q ss_pred CceecCChhhcCChHHHHHHHHhhhcccCeeeecCCCCCCCcchhh
Q 039624 20 APEFHPTLAEFQDPIAYIFKIEKEASQYGICKIVPPVPPPPKKTAI 65 (466)
Q Consensus 20 ~pvf~PT~eEF~dp~~yi~~i~~~a~~~GI~KIvPP~~w~p~~~~~ 65 (466)
.-+|+||..+.-++-.| ..|+.+-..+|-|||.|| .|.|++..+
T Consensus 200 e~Ilypt~~d~~te~ew-~~i~~~~~eigy~~i~p~-~w~p~~~~i 243 (409)
T COG2461 200 ENILYPTLLDLLTEGEW-EAIKEQSKEIGYAKIKPP-KWKPKKESI 243 (409)
T ss_pred hhhHHhHHHHhcCHHHH-HHHHhcCcccceEEecCc-cccCccccc
Confidence 45688988887776655 457778888999999999 999988654
No 14
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=30.18 E-value=38 Score=32.26 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=32.9
Q ss_pred CCCcceeeccCCcEEEEcCCcceeeeccccceehhhcc-------cCchhHHH
Q 039624 306 GVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANI-------ATPEWLNI 351 (466)
Q Consensus 306 GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEavNF-------A~~~Wl~~ 351 (466)
.=+++.+.-.+|++|.+-||.||| |.+.|+-|| +++.|.+.
T Consensus 114 d~~~~~i~c~~gDLI~vP~gi~Hw-----Ftlt~~~~f~AvRlF~~~~gWVa~ 161 (181)
T COG1791 114 DGKVYQIRCEKGDLISVPPGIYHW-----FTLTESPNFKAVRLFTEPEGWVAI 161 (181)
T ss_pred CCcEEEEEEccCCEEecCCCceEE-----EEccCCCcEEEEEEeeCCCCceee
Confidence 347888888999999999999998 677777777 45677653
No 15
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=30.09 E-value=70 Score=26.16 Aligned_cols=37 Identities=24% Similarity=0.437 Sum_probs=28.0
Q ss_pred eCCCCceeeEeeeeCC-ceeEEecChhhHHHHHHHHHH
Q 039624 238 AEDHDLHSLNYLHMGA-SKTWYGVPMEAANAFEEVVRV 274 (466)
Q Consensus 238 ~ED~~l~SINY~H~Ga-pK~WY~VP~~~~~kfE~l~~~ 274 (466)
.|+.++-++..-..|. |++||.+-+.-.+.|++.+..
T Consensus 38 Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr~~~~~~~~~ 75 (80)
T PF13601_consen 38 LEEAGYVEVEKEFEGRRPRTWYSLTDKGREAFERYVAA 75 (80)
T ss_dssp HHHTTSEEEEEE-SSS--EEEEEE-HHHHHHHHHHHHH
T ss_pred HHHCCCEEEEEeccCCCCeEEEEECHHHHHHHHHHHHH
Confidence 4777787777777665 999999999999999998764
Done!