Query 039624
Match_columns 466
No_of_seqs 280 out of 693
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 19:56:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039624.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039624hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vrba1 b.82.2.11 (A:8-326) Pu 97.2 0.00055 4E-08 64.3 9.6 119 222-355 123-244 (319)
2 d1h2ka_ b.82.2.6 (A:) Hypoxia- 96.8 0.0018 1.3E-07 62.3 9.3 110 220-343 168-281 (335)
3 d1zrra1 b.82.1.6 (A:1-179) Aci 26.7 16 0.0012 31.3 2.7 23 308-330 120-142 (179)
4 d1o4ta_ b.82.1.9 (A:) Hypothet 23.8 18 0.0013 27.8 2.3 23 314-336 82-104 (115)
5 d1vj2a_ b.82.1.10 (A:) Hypothe 18.0 29 0.0021 26.3 2.4 34 311-344 75-108 (114)
6 d1v70a_ b.82.1.9 (A:) Hypothet 17.2 30 0.0022 25.4 2.2 29 313-341 70-98 (105)
7 d1lr5a_ b.82.1.2 (A:) Auxin bi 15.9 35 0.0026 27.8 2.5 26 311-336 89-114 (160)
8 d1s4ca1 b.82.2.7 (A:1-143) Hyp 14.2 58 0.0043 26.2 3.4 23 309-331 111-133 (143)
9 d1x82a_ b.82.1.7 (A:) Glucose- 14.1 37 0.0027 28.7 2.2 35 311-345 120-154 (190)
10 d2b8ma1 b.82.1.18 (A:1-108) Hy 12.5 54 0.0039 24.7 2.6 30 314-343 69-98 (108)
No 1
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}
Probab=97.19 E-value=0.00055 Score=64.32 Aligned_cols=119 Identities=16% Similarity=0.090 Sum_probs=80.1
Q ss_pred cceeeeecccCcccceeCCCCceeeEeeeeCCceeEEecChhhHHHHHHHHHHcCCCC---CCCchhhhhhhcCCccccC
Q 039624 222 SPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGE---EINPLVTFATLGEKTTMIS 298 (466)
Q Consensus 222 ~P~lYiGm~~S~f~WH~ED~~l~SINY~H~GapK~WY~VP~~~~~kfE~l~~~~~~~~---~~~~~~~~~~L~h~~~~is 298 (466)
...+++|...+.+.+|...++ .++.+-.| .|.|+..|+.+...+ +.. ........+... ...
T Consensus 123 ~~~~~~~~~g~~~~~H~D~~d--~f~~Qv~G-~K~W~L~~p~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~--- 187 (319)
T d1vrba1 123 KAIVYAAKNGGGFKAHFDAYT--NLIFQIQG-EKTWKLAKNENVSNP--------MQHYDLSEAPYYPDDLQS-YWK--- 187 (319)
T ss_dssp EEEEEEECSSCCCCSEECSSE--EEEEEEES-CEEEEEECCSSCSSC--------SSCEECC----CCHHHHH-HCC---
T ss_pred eeEEEecCCCCCCccccCCCc--eeEEeecc-eEEEEEeCCcccccc--------ccCcccccCccccccccc-cch---
Confidence 346888888999999998764 34445566 899999998763311 100 000000000000 000
Q ss_pred hhhHhcCCCCcceeeccCCcEEEEcCCcceeeeccccceehhhcccCchhHHHHHHH
Q 039624 299 PEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANIATPEWLNIAKDA 355 (466)
Q Consensus 299 P~~L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEavNFA~~~Wl~~g~~a 355 (466)
.......+.+.+.++++|||.++.=+|-+|.+.|.|-+++-++||..++|.++-..+
T Consensus 188 ~~~~~~~~~~~~~~~L~pGDvLYiP~gw~H~v~s~~~sis~sv~f~~~~~~d~~~~~ 244 (319)
T d1vrba1 188 GDPPKEDLPDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFGQPAWLDLMLAA 244 (319)
T ss_dssp SCCCCTTCCSSEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCCBHHHHHHHH
T ss_pred hhchhhhcCccEEEEECCCCEEEeCCCceEEeEecCCeEEEEEEecCCCHHHHHHHH
Confidence 001123456788999999999999999999999999999999999999999975444
No 2
>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.78 E-value=0.0018 Score=62.26 Aligned_cols=110 Identities=15% Similarity=0.060 Sum_probs=73.2
Q ss_pred CccceeeeecccCcccceeCCCCceeeEeeeeCCceeEEecChhhHHHHHHHHHHcCCCCCCCchhhhhhhcCCccccCh
Q 039624 220 VTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINPLVTFATLGEKTTMISP 299 (466)
Q Consensus 220 v~~P~lYiGm~~S~f~WH~ED~~l~SINY~H~GapK~WY~VP~~~~~kfE~l~~~~~~~~~~~~~~~~~~L~h~~~~isP 299 (466)
....+|++|..+|.+.+|.+.. ..++.+-.| .|.|+.+|+++...+.. +... ... ... ...-+..|
T Consensus 168 ~~~~~lwiG~~gs~t~~H~D~~--~~~~~q~~G-~K~~~l~~p~~~~~~~~------~~~~-~~~---~~~-s~~d~~~~ 233 (335)
T d1h2ka_ 168 LTSNLLLIGMEGNVTPAHYDEQ--QNFFAQIKG-YKRCILFPPDQFECLYP------YPVH-HPC---DRQ-SQVDFDNP 233 (335)
T ss_dssp EEECEEEEECTTCEEEEECCSE--EEEEEEEES-CEEEEEECGGGHHHHCB------CCTT-STT---TTB-BCCCTTSC
T ss_pred CcceEEEEcCCCCCCccccccc--cceEEEecc-ceEEEEecccccccccc------cccc-CCC---Ccc-eeccccCc
Confidence 4456799999999999998764 466666666 89999999998764321 0000 000 000 00001111
Q ss_pred hh---HhcCCCCcceeeccCCcEEEEcCCcceeeecc-ccceehhhcc
Q 039624 300 EV---FVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSH-GFNCGEAANI 343 (466)
Q Consensus 300 ~~---L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~-Gfn~aEavNF 343 (466)
+. -.-.+.+.+.++++|||.++.=++-+|.+.|. +-+++.||||
T Consensus 234 d~~~~p~~~~~~~~~~~l~pGd~L~iP~~w~H~V~~~~~~~~sisvn~ 281 (335)
T d1h2ka_ 234 DYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNF 281 (335)
T ss_dssp CTTTCGGGGGCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEE
T ss_pred chhhccchhcCCceEEEECCCCEEeeCCCCeEEEEEcCCCCeEEEEEe
Confidence 11 11234678899999999999999999999997 4478888998
No 3
>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}
Probab=26.71 E-value=16 Score=31.33 Aligned_cols=23 Identities=4% Similarity=0.053 Sum_probs=20.7
Q ss_pred CcceeeccCCcEEEEcCCcceee
Q 039624 308 PCCRLVQNAGEFVVTFPRAYHMG 330 (466)
Q Consensus 308 pv~r~vQ~pGEfVvtfP~aYH~g 330 (466)
.++++.-++|++|++-||++|+-
T Consensus 120 ~~~~v~~~~GDli~vPag~~H~F 142 (179)
T d1zrra1 120 EVFQVLCEKNDLISVPAHTPHWF 142 (179)
T ss_dssp CEEEEECCCSCEEEECTTCCBCC
T ss_pred eEEEEEEcCCCEEEeCCCCeEcc
Confidence 57788899999999999999984
No 4
>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}
Probab=23.77 E-value=18 Score=27.77 Aligned_cols=23 Identities=22% Similarity=0.105 Sum_probs=20.4
Q ss_pred ccCCcEEEEcCCcceeeeccccc
Q 039624 314 QNAGEFVVTFPRAYHMGFSHGFN 336 (466)
Q Consensus 314 Q~pGEfVvtfP~aYH~gfn~Gfn 336 (466)
=+|||++++-|++.|+..|.|-.
T Consensus 82 l~~Gd~~~ip~g~~H~~~N~g~~ 104 (115)
T d1o4ta_ 82 IKAGDVCFTDSGESHSIENTGNT 104 (115)
T ss_dssp EETTEEEEECTTCEEEEECCSSS
T ss_pred eeccEEEEECCCCeEEEEECCCC
Confidence 36999999999999999999854
No 5
>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}
Probab=17.98 E-value=29 Score=26.34 Aligned_cols=34 Identities=12% Similarity=-0.037 Sum_probs=27.0
Q ss_pred eeeccCCcEEEEcCCcceeeeccccceehhhccc
Q 039624 311 RLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANIA 344 (466)
Q Consensus 311 r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEavNFA 344 (466)
...-.+|++++.-|+..|...|.|-...+-+-+.
T Consensus 75 ~~~l~~Gd~~~ip~~~~H~~~n~~~~~~~~l~ii 108 (114)
T d1vj2a_ 75 EETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCLI 108 (114)
T ss_dssp EEEEETTEEEEECTTCCEEEECCSSSCEEEEEEE
T ss_pred eeEEecCeEEEEcCCCeEEEEeCCCCCEEEEEEE
Confidence 4667899999999999999999986655544443
No 6
>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}
Probab=17.19 E-value=30 Score=25.41 Aligned_cols=29 Identities=10% Similarity=-0.151 Sum_probs=23.4
Q ss_pred eccCCcEEEEcCCcceeeeccccceehhh
Q 039624 313 VQNAGEFVVTFPRAYHMGFSHGFNCGEAA 341 (466)
Q Consensus 313 vQ~pGEfVvtfP~aYH~gfn~Gfn~aEav 341 (466)
.=++|+.++.-|++.|...|.|-.-+..+
T Consensus 70 ~l~~Gd~~~~p~~~~H~~~n~g~~~~~~l 98 (105)
T d1v70a_ 70 LLAPGMAAFAPAGAPHGVRNESASPALLL 98 (105)
T ss_dssp EECTTCEEEECTTSCEEEECCSSSCEEEE
T ss_pred EecceEEEEeCCCCEEEeEECCCCCEEEE
Confidence 34689999999999999999986555443
No 7
>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}
Probab=15.89 E-value=35 Score=27.78 Aligned_cols=26 Identities=4% Similarity=-0.166 Sum_probs=23.0
Q ss_pred eeeccCCcEEEEcCCcceeeeccccc
Q 039624 311 RLVQNAGEFVVTFPRAYHMGFSHGFN 336 (466)
Q Consensus 311 r~vQ~pGEfVvtfP~aYH~gfn~Gfn 336 (466)
++.=.||++|++-|++.|..+|.|-+
T Consensus 89 ~~~l~~Gd~~~iP~~~~H~~~N~g~~ 114 (160)
T d1lr5a_ 89 EIPFFQNTTFSIPVNDPHQVWNSDEH 114 (160)
T ss_dssp EEEECTTEEEEECTTCCEEEECCCSS
T ss_pred EEEecCCCEEEeCCCCcEEEEECCCC
Confidence 56678999999999999999999854
No 8
>d1s4ca1 b.82.2.7 (A:1-143) Hypothetical protein HI0227 {Haemophilus influenzae [TaxId: 727]}
Probab=14.20 E-value=58 Score=26.22 Aligned_cols=23 Identities=17% Similarity=0.194 Sum_probs=19.4
Q ss_pred cceeeccCCcEEEEcCCcceeee
Q 039624 309 CCRLVQNAGEFVVTFPRAYHMGF 331 (466)
Q Consensus 309 v~r~vQ~pGEfVvtfP~aYH~gf 331 (466)
...+.-.||+|+|.||+=-|..-
T Consensus 111 ~~~i~l~~G~f~iFfP~D~H~P~ 133 (143)
T d1s4ca1 111 KFTVTMKPKMFAVFYPYEPHKPC 133 (143)
T ss_dssp CEEEEECTTEEEEECTTCCEEEE
T ss_pred ceEEEeCCCeEEEECCCCccccc
Confidence 34578899999999999999853
No 9
>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=14.09 E-value=37 Score=28.71 Aligned_cols=35 Identities=17% Similarity=-0.020 Sum_probs=28.1
Q ss_pred eeeccCCcEEEEcCCcceeeeccccceehhhcccC
Q 039624 311 RLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANIAT 345 (466)
Q Consensus 311 r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEavNFA~ 345 (466)
.+.=.||++|++-|+..|...|.|-.-...+++.+
T Consensus 120 ~~~v~~Gd~v~iP~g~~H~~~N~Gde~L~~l~v~~ 154 (190)
T d1x82a_ 120 WISMEPGTVVYVPPYWAHRTVNIGDEPFIFLAIYP 154 (190)
T ss_dssp EEEECTTCEEEECTTCEEEEEECSSSCEEEEEEEE
T ss_pred EEEecCCcEEEEecceeEEeEECCCCCEEEEEEEC
Confidence 45567999999999999999999976666555544
No 10
>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=12.46 E-value=54 Score=24.68 Aligned_cols=30 Identities=10% Similarity=-0.132 Sum_probs=23.9
Q ss_pred ccCCcEEEEcCCcceeeeccccceehhhcc
Q 039624 314 QNAGEFVVTFPRAYHMGFSHGFNCGEAANI 343 (466)
Q Consensus 314 Q~pGEfVvtfP~aYH~gfn~Gfn~aEavNF 343 (466)
=+||++++.-+++.|+..|.|-.-.+-+-+
T Consensus 69 v~~Gd~i~ip~~~~H~~~n~~~e~l~~l~v 98 (108)
T d2b8ma1 69 YKEGNIVYVPFNVKMLIQNINSDILEFFVV 98 (108)
T ss_dssp EETTCEEEECTTCEEEEECCSSSEEEEEEE
T ss_pred eecceEeeccCCceEEEEcCCCCcEEEEEE
Confidence 368999999999999999998765544433
Done!