BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039625
         (238 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
           Streptomyces Venezueale In Complex With D-glucose.
 pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
           Streptomyces Venezueale In Complex With D-glucose
          Length = 829

 Score = 45.1 bits (105), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 7/64 (10%)

Query: 32  VTKQDLEDMYQPPFKSCVKESHVSSVICSYNRVIGIPTCADPDLLKGVIKSQWGL----- 86
           V +Q L ++  P F++  K +  +S +C+YN + G P+C + +LL  V+++QWG      
Sbjct: 214 VDEQTLREIEFPAFEASSK-AGAASFMCAYNGLNGKPSCGNDELLNNVLRTQWGFQGWVM 272

Query: 87  -DWL 89
            DWL
Sbjct: 273 SDWL 276



 Score = 33.9 bits (76), Expect = 0.089,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 24/32 (75%)

Query: 192 EGLDKENLTLHGYQEKLVMEVANATKGTMILV 223
           EG+D+ NL+L G Q+KL+  VA+A   T++++
Sbjct: 579 EGVDRPNLSLPGTQDKLISAVADANPNTIVVL 610


>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
           Trichoderma Reesei
 pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
           Trichoderma Reesei
          Length = 714

 Score = 39.7 bits (91), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 7/60 (11%)

Query: 35  QDLEDMYQPPFKSCVKESHVSSVICSYNRVIGIPTCADPDLLKGVIKSQWGL------DW 88
           + L ++Y  PF   V +++V+SV+CSYN+V     C D   L+ V+K Q G       DW
Sbjct: 180 RTLHELYTWPFADAV-QANVASVMCSYNKVNTTWACEDQYTLQTVLKDQLGFPGYVMTDW 238


>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
           Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
           Resolution.
 pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
           Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
           Resolution
          Length = 713

 Score = 39.7 bits (91), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 7/60 (11%)

Query: 35  QDLEDMYQPPFKSCVKESHVSSVICSYNRVIGIPTCADPDLLKGVIKSQWGL------DW 88
           + L ++Y  PF   V +++V+SV+CSYN+V     C D   L+ V+K Q G       DW
Sbjct: 179 RTLHELYTWPFADAV-QANVASVMCSYNKVNTTWACEDQYTLQTVLKDQLGFPGYVMTDW 237


>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
           Marxianus In Complex With Glucose
 pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
           Marxianus In Complex With Glucose
 pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
           Marxianus In Complex With Glucose
 pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
           Marxianus In Complex With Glucose
          Length = 845

 Score = 39.3 bits (90), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 166 IEQAAKAAGTADVVVMVVGLDQSIEAEGLDKENLTLHGYQEKLVMEVANATKGTMIL 222
           I  AA+ A   D  V+++GL+   E EG D+EN+ L     +LV  V  A   T+I+
Sbjct: 564 IRNAAELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPNTVIV 620



 Score = 35.4 bits (80), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 31/56 (55%)

Query: 32  VTKQDLEDMYQPPFKSCVKESHVSSVICSYNRVIGIPTCADPDLLKGVIKSQWGLD 87
           V+++ L ++Y  PF+  VK ++   ++ +YN+V G        LL  +++ +W  D
Sbjct: 164 VSERALREIYLEPFRLAVKHANPVCIMTAYNKVNGEHCSQSKKLLIDILRDEWKWD 219


>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
           Kluyveromyces Marxianus
 pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
           Kluyveromyces Marxianus
 pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
           Kluyveromyces Marxianus
 pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
           Kluyveromyces Marxianus
          Length = 845

 Score = 38.5 bits (88), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 166 IEQAAKAAGTADVVVMVVGLDQSIEAEGLDKENLTLHGYQEKLVMEVANATKGTMIL 222
           I  AA+ A   D  V+++GL+   E EG D+EN  L     +LV  V  A   T+I+
Sbjct: 564 IRNAAELAAKHDKAVLIIGLNGEWETEGYDRENXDLPKRTNELVRAVLKANPNTVIV 620



 Score = 33.5 bits (75), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%)

Query: 32  VTKQDLEDMYQPPFKSCVKESHVSSVICSYNRVIGIPTCADPDLLKGVIKSQWGLD 87
           V+++ L ++Y  PF+  VK ++   +  +YN+V G        LL  +++ +W  D
Sbjct: 164 VSERALREIYLEPFRLAVKHANPVCIXTAYNKVNGEHCSQSKKLLIDILRDEWKWD 219


>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
           Neapolitana In Complex With Alpha-D-Glucose
          Length = 721

 Score = 36.2 bits (82), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 34/56 (60%)

Query: 32  VTKQDLEDMYQPPFKSCVKESHVSSVICSYNRVIGIPTCADPDLLKGVIKSQWGLD 87
           V+++ L ++Y   F+  VK+S   SV+ +YN++ G     +  LLK V++ +WG +
Sbjct: 181 VSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLKKVLREEWGFE 236



 Score = 28.5 bits (62), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 117 DDHKSLALDAAKQGIDSLDNKGALPLSSNNTKNLAVIGS 155
           + H  +A +A  +G+  L N+ ALPLS N+   +A+ G+
Sbjct: 322 EKHAKVAYEAGAEGVVLLRNEEALPLSENS--KIALFGT 358


>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
           Neapolitana In Complex With Glycerol
 pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
           Neapolitana In Complex With Glucose
          Length = 721

 Score = 36.2 bits (82), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 34/56 (60%)

Query: 32  VTKQDLEDMYQPPFKSCVKESHVSSVICSYNRVIGIPTCADPDLLKGVIKSQWGLD 87
           V+++ L ++Y   F+  VK+S   SV+ +YN++ G     +  LLK V++ +WG +
Sbjct: 181 VSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLKKVLREEWGFE 236



 Score = 28.5 bits (62), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 117 DDHKSLALDAAKQGIDSLDNKGALPLSSNNTKNLAVIGS 155
           + H  +A +A  +G+  L N+ ALPLS N+   +A+ G+
Sbjct: 322 EKHAKVAYEAGAEGVVLLRNEEALPLSENS--KIALFGT 358


>pdb|1D6J|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate (Aps)
           Kinase From Penicillium Chrysogenum
 pdb|1D6J|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate (Aps)
           Kinase From Penicillium Chrysogenum
 pdb|1M7G|A Chain A, Crystal Structure Of Aps Kinase From Penicillium
           Chrysogenum: Ternary Structure With Adp And Aps
 pdb|1M7G|B Chain B, Crystal Structure Of Aps Kinase From Penicillium
           Chrysogenum: Ternary Structure With Adp And Aps
 pdb|1M7G|C Chain C, Crystal Structure Of Aps Kinase From Penicillium
           Chrysogenum: Ternary Structure With Adp And Aps
 pdb|1M7G|D Chain D, Crystal Structure Of Aps Kinase From Penicillium
           Chrysogenum: Ternary Structure With Adp And Aps
 pdb|1M7H|A Chain A, Crystal Structure Of Aps Kinase From Penicillium
           Chrysogenum: Structure With Aps Soaked Out Of One Dimer
 pdb|1M7H|B Chain B, Crystal Structure Of Aps Kinase From Penicillium
           Chrysogenum: Structure With Aps Soaked Out Of One Dimer
 pdb|1M7H|C Chain C, Crystal Structure Of Aps Kinase From Penicillium
           Chrysogenum: Structure With Aps Soaked Out Of One Dimer
 pdb|1M7H|D Chain D, Crystal Structure Of Aps Kinase From Penicillium
           Chrysogenum: Structure With Aps Soaked Out Of One Dimer
          Length = 211

 Score = 30.4 bits (67), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 20/39 (51%)

Query: 103 SQPLGNLGPSDVHTDDHKSLALDAAKQGIDSLDNKGALP 141
           S P       +VH  +++    DA KQ ID LD KG LP
Sbjct: 169 SAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDTKGYLP 207


>pdb|3CR7|A Chain A, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
           From Penicillium Chrysogenum: Ternary Structure With Adp
           And Paps
 pdb|3CR7|B Chain B, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
           From Penicillium Chrysogenum: Ternary Structure With Adp
           And Paps
 pdb|3CR7|C Chain C, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
           From Penicillium Chrysogenum: Ternary Structure With Adp
           And Paps
 pdb|3CR7|D Chain D, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
           From Penicillium Chrysogenum: Ternary Structure With Adp
           And Paps
          Length = 197

 Score = 30.4 bits (67), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 20/39 (51%)

Query: 103 SQPLGNLGPSDVHTDDHKSLALDAAKQGIDSLDNKGALP 141
           S P       +VH  +++    DA KQ ID LD KG LP
Sbjct: 147 SAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDTKGYLP 185


>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
           Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
           Sp. Bb1
          Length = 822

 Score = 29.3 bits (64), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 32  VTKQDLEDMYQPPFKSCVKESHVSSVICSYNRVIGIPTCADPDLLKGVIKSQWGLD 87
           + ++ L D++   + S + +  V SV+ S+N   G     D  LL  V+K+Q G D
Sbjct: 234 IDEKGLRDIHSAGYFSAINQG-VQSVMASFNSWNGKRVHGDKHLLTDVLKNQLGFD 288


>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
           (Exop) From Pseudoalteromonas Sp. Bb1
 pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
           Pseudoalteromonas Sp. Bb1
 pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
           Pseudoalteromonas Sp. Bb1
 pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
           Pseudoalteromonas Sp. Bb1
 pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
           Pseudoalteromonas Sp. Bb1
          Length = 822

 Score = 29.3 bits (64), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 32  VTKQDLEDMYQPPFKSCVKESHVSSVICSYNRVIGIPTCADPDLLKGVIKSQWGLD 87
           + ++ L D++   + S + +  V SV+ S+N   G     D  LL  V+K+Q G D
Sbjct: 234 IDEKGLRDIHSAGYFSAINQG-VQSVMASFNSWNGKRVHGDKHLLTDVLKNQLGFD 288


>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
           Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
 pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
           Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
 pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
           Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
          Length = 602

 Score = 28.5 bits (62), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 32  VTKQDLEDMYQPPFKSCVKESHVSSVICSYNRVIGIPTCADPDLLKGVIK 81
           + ++ L +++ P +K+ + +  VS+V+ SY+   G+   A+ DL+ G +K
Sbjct: 225 INREGLMNIHMPAYKNAMDKG-VSTVMISYSSWNGVKMHANQDLVTGYLK 273


>pdb|3NIX|A Chain A, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
           CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
           Consortium Target Chr43.
 pdb|3NIX|B Chain B, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
           CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
           Consortium Target Chr43.
 pdb|3NIX|C Chain C, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
           CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
           Consortium Target Chr43.
 pdb|3NIX|D Chain D, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
           CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
           Consortium Target Chr43.
 pdb|3NIX|E Chain E, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
           CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
           Consortium Target Chr43.
 pdb|3NIX|F Chain F, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
           CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
           Consortium Target Chr43.
 pdb|3NIX|G Chain G, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
           CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
           Consortium Target Chr43.
 pdb|3NIX|H Chain H, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
           CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
           Consortium Target Chr43
          Length = 421

 Score = 28.5 bits (62), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 5/106 (4%)

Query: 120 KSLALDAAKQGIDSLDNKGALPLSSNNTKNLAVIGSNANATNRRLLIEQAAKAAGTADVV 179
           K+LA +AA+QG+D     G   +    T ++  I  + N   R +       A+G   V+
Sbjct: 110 KTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTI-EDINGNKREIEARFIIDASGYGRVI 168

Query: 180 VMVVGLDQSIEAEGLDKENLTLHGYQEKLVMEVANATKGTMILVVM 225
               GLD+     G +    TL  + + +   VA   +G  I  V+
Sbjct: 169 PRXFGLDKP---SGFESRR-TLFTHIKDVKRPVAAEXEGNRITAVV 210


>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
 pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
           Isoenzyme Exo1 In Complex With
           4i,4iii,4v-S-Trithiocellohexaose
 pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
           Isoenzyme Exo1 In Complex With
           2-Deoxy-2-Fluoro-Alpha-D-Glucoside
 pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
           Isoenzyme Exo1 In Complex With Cyclohexitol
 pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
           Isoenzyme Exo1
 pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
           Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
           3i-Thiolaminaritrioside
          Length = 605

 Score = 28.5 bits (62), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 32  VTKQDLEDMYQPPFKSCVKESHVSSVICSYNRVIGIPTCADPDLLKGVIK 81
           + ++ L +++ P +K+ + +  VS+V+ SY+   G+   A+ DL+ G +K
Sbjct: 225 INREGLMNIHMPAYKNAMDKG-VSTVMISYSSWNGVKMHANQDLVTGYLK 273


>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
           Dehydrogenase
 pdb|2CMJ|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
           Dehydrogenase
 pdb|2CMV|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
           Dehydrogenase Complexed With Cadmium And Citrate
 pdb|2CMV|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
           Dehydrogenase Complexed With Cadmium And Citrate
          Length = 410

 Score = 27.3 bits (59), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 17/88 (19%)

Query: 28  TIRKVTKQDLEDMYQPPFKSCVKESHVSSVICSYNRVIGIPTCADPDLLKGVIKSQWGLD 87
           TI K      +D++Q  +    K    +  IC  +R+I        D++   +KS+ G  
Sbjct: 211 TILKKYDGRFKDIFQEIYDKKYKSQFEAQNICYEHRLI-------DDMVAQAMKSEGGFI 263

Query: 88  W-LKNMRLGFFDGDPKS----QPLGNLG 110
           W  KN     +DGD +S    Q  G+LG
Sbjct: 264 WACKN-----YDGDVQSDSVAQGYGSLG 286


>pdb|4DOX|A Chain A, Crystal Structure Of Papaya Mosaic Virus Capsid Protein
 pdb|4DOX|B Chain B, Crystal Structure Of Papaya Mosaic Virus Capsid Protein
          Length = 226

 Score = 26.9 bits (58), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 31/62 (50%)

Query: 109 LGPSDVHTDDHKSLALDAAKQGIDSLDNKGALPLSSNNTKNLAVIGSNANATNRRLLIEQ 168
           + P++     +K  A  AA    D ++N  A+   S  T++       ANATN+++ + Q
Sbjct: 122 MAPANWEASGYKPSAKFAAFDFFDGVENPAAMQPPSGLTRSPTQEERIANATNKQVHLFQ 181

Query: 169 AA 170
           AA
Sbjct: 182 AA 183


>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
           From The Lyme Disease Spirochete Borrelia Burgdorferi
 pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
           From The Lyme Disease Spirochete Borrelia Burgdorferi
 pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
           Alf3 Containing Pyrophosphate-Dependent
           Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
 pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
           Alf3 Containing Pyrophosphate-Dependent
           Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
          Length = 555

 Score = 26.9 bits (58), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 19/83 (22%)

Query: 110 GPSDVHTDDHKSLALDAAKQGIDSLDNKGALPLSSNNTKNLAVIGSNANATNRRLLIEQA 169
           G + + T++H + AL  AK+               NN   + +IG + + TN  +L E  
Sbjct: 145 GRTKIETEEHYNKALFVAKE---------------NNLNAIIIIGGDDSNTNAAILAEYF 189

Query: 170 AKAAGTADVVVMVVGLDQSIEAE 192
            K        + V+G+ ++I+A+
Sbjct: 190 KKNGEN----IQVIGVPKTIDAD 208


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,510,627
Number of Sequences: 62578
Number of extensions: 255835
Number of successful extensions: 641
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 621
Number of HSP's gapped (non-prelim): 32
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)