BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039627
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071
Length = 732
Score = 139 bits (350), Expect = 1e-33, Method: Composition-based stats.
Identities = 71/189 (37%), Positives = 109/189 (57%), Gaps = 12/189 (6%)
Query: 1 ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQ 60
+L VY W G N + PE W FP + P P L C+CR Y+PMSY Y R PL+
Sbjct: 199 VLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQS 258
Query: 61 LREEIYTQPYRDIHWSKMRHFCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLN---Q 117
LR+E+Y + + I W R+ A ++++ PH+ W L VV +LN + +
Sbjct: 259 LRQELYVEDFASIDWLAQRNNVAPDELYTPHS------W--LLRVVYALLNLYEHHHSAH 310
Query: 118 LREKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCW-VEDPNSDYFKKHLSRISEYLW 176
LR+++++ HI +D ++ ++IG + K +NML W V+ P S F++H+SRI +YLW
Sbjct: 311 LRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLW 370
Query: 177 VGEDGMKVQ 185
+G DGMK+Q
Sbjct: 371 MGLDGMKMQ 379
>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol
Length = 732
Score = 139 bits (350), Expect = 1e-33, Method: Composition-based stats.
Identities = 71/189 (37%), Positives = 109/189 (57%), Gaps = 12/189 (6%)
Query: 1 ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQ 60
+L VY W G N + PE W FP + P P L C+CR Y+PMSY Y R PL+
Sbjct: 199 VLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQS 258
Query: 61 LREEIYTQPYRDIHWSKMRHFCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLN---Q 117
LR+E+Y + + I W R+ A ++++ PH+ W L VV +LN + +
Sbjct: 259 LRQELYVEDFASIDWLAQRNNVAPDELYTPHS------W--LLRVVYALLNLYEHHHSAH 310
Query: 118 LREKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCW-VEDPNSDYFKKHLSRISEYLW 176
LR+++++ HI +D ++ ++IG + K +NML W V+ P S F++H+SRI +YLW
Sbjct: 311 LRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLW 370
Query: 177 VGEDGMKVQ 185
+G DGMK+Q
Sbjct: 371 MGLDGMKMQ 379
>pdb|1TWY|A Chain A, Crystal Structure Of An Abc-Type Phosphate Transport
Receptor From Vibrio Cholerae
pdb|1TWY|B Chain B, Crystal Structure Of An Abc-Type Phosphate Transport
Receptor From Vibrio Cholerae
pdb|1TWY|C Chain C, Crystal Structure Of An Abc-Type Phosphate Transport
Receptor From Vibrio Cholerae
pdb|1TWY|D Chain D, Crystal Structure Of An Abc-Type Phosphate Transport
Receptor From Vibrio Cholerae
pdb|1TWY|E Chain E, Crystal Structure Of An Abc-Type Phosphate Transport
Receptor From Vibrio Cholerae
pdb|1TWY|F Chain F, Crystal Structure Of An Abc-Type Phosphate Transport
Receptor From Vibrio Cholerae
pdb|1TWY|G Chain G, Crystal Structure Of An Abc-Type Phosphate Transport
Receptor From Vibrio Cholerae
pdb|1TWY|H Chain H, Crystal Structure Of An Abc-Type Phosphate Transport
Receptor From Vibrio Cholerae
Length = 290
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 130 IHYEDEASRYMTIGCVEKPLNMLSCWVEDPNSDYFKKHLSRIS 172
+++ +A +++IG V+K + + DP SD KH ++S
Sbjct: 194 VNHNTQAVGFISIGSVDKSVKAIQFEKADPTSDNIAKHTYQLS 236
>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
pdb|1S9I|B Chain B, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
Length = 354
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 79 RHFCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLREKSLE 124
R + A E + H SVQ+ +W ++VE + R+P+ K LE
Sbjct: 177 RSYMAPERLQGTHYSVQSDIWSMGLSLVELAVGRYPIPPPDAKELE 222
>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3EQB|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
Length = 333
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 79 RHFCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLREKSLEI 125
R + + E + H SVQ+ +W ++VE + R+P+ K LE+
Sbjct: 167 RSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELEL 213
>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3DY7|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3E8N|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) Complexed With A Potent Inhibitor
Rdea119 And Mgatp
pdb|3V01|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions.
pdb|3V04|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions
Length = 341
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 79 RHFCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLREKSLEI 125
R + + E + H SVQ+ +W ++VE + R+P+ K LE+
Sbjct: 167 RSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELEL 213
>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer
Length = 395
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 79 RHFCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLREKSLEI 125
R + + E + H SVQ+ +W ++VE + R+P+ K LE+
Sbjct: 229 RSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELEL 275
>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp
pdb|3PP1|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgatp
Length = 328
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 79 RHFCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLREKSLEI 125
R + + E + H SVQ+ +W ++VE + R+P+ K LE+
Sbjct: 167 RSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELEL 213
>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound
Length = 322
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 79 RHFCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLREKSLEI 125
R + + E + H SVQ+ +W ++VE + R+P+ K LE+
Sbjct: 167 RSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELEL 213
>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With
Compound 1, Atp-Gs And Mg2p
pdb|3EQD|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Atp-Gs
And Mg2p
pdb|3EQF|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With K252a
And Mg2p
pdb|3EQG|A Chain A, X-ray Structure Of The Human Mitogen-activated Protein
Kinase Kinase 1 (mek1) In A Ternary Complex With Pd, Adp
And Mg2p
pdb|3EQH|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With U0126,
Adp And Mg2p
pdb|3EQI|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Adp And
Mg2p
Length = 360
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 79 RHFCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLREKSLEI 125
R + + E + H SVQ+ +W ++VE + R+P+ K LE+
Sbjct: 194 RSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELEL 240
>pdb|2B39|A Chain A, Structure Of Mammalian C3 With An Intact Thioester At 3a
Resolution
pdb|2B39|B Chain B, Structure Of Mammalian C3 With An Intact Thioester At 3a
Resolution
Length = 1661
Score = 26.6 bits (57), Expect = 7.9, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 82 CAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLREKSLE 124
CA+E+ F HT + L D L EP ++ +L +K LE
Sbjct: 1511 CAEENCFMHHTEKEVTLEDRLDKACEPGVDYVYKTRLIQKKLE 1553
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.481
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,349,528
Number of Sequences: 62578
Number of extensions: 253378
Number of successful extensions: 440
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 421
Number of HSP's gapped (non-prelim): 16
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)