Query 039627
Match_columns 185
No_of_seqs 121 out of 604
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 11:34:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03012 Camelliol C synthase 100.0 6.4E-58 1.4E-62 426.6 12.9 185 1-185 227-412 (759)
2 PLN02993 lupeol synthase 100.0 2.4E-56 5.2E-61 416.7 12.9 185 1-185 227-412 (763)
3 KOG0497 Oxidosqualene-lanoster 100.0 5.9E-52 1.3E-56 376.7 8.7 185 1-185 227-411 (760)
4 TIGR03463 osq_cycl 2,3-oxidosq 100.0 3E-51 6.6E-56 379.7 13.5 180 1-185 120-300 (634)
5 cd02892 SQCY_1 Squalene cyclas 100.0 2.2E-44 4.8E-49 334.3 13.4 177 1-184 123-300 (634)
6 TIGR01507 hopene_cyclase squal 100.0 2.2E-40 4.8E-45 307.1 12.4 166 1-185 139-310 (635)
7 TIGR01787 squalene_cyclas squa 100.0 1.5E-37 3.3E-42 287.8 12.2 166 1-185 123-290 (621)
8 COG1657 SqhC Squalene cyclase 99.4 6.7E-14 1.5E-18 126.6 3.9 150 1-182 39-190 (517)
9 COG1657 SqhC Squalene cyclase 94.3 0.022 4.8E-07 52.4 1.8 132 2-140 342-478 (517)
10 cd02897 A2M_2 Proteins similar 92.8 0.33 7.3E-06 41.0 6.3 58 118-175 99-173 (292)
11 KOG0497 Oxidosqualene-lanoster 92.1 0.11 2.5E-06 49.2 2.8 72 2-73 243-314 (760)
12 PF13243 Prenyltrans_1: Prenyl 91.6 0.19 4E-06 35.8 2.9 53 121-173 46-104 (109)
13 cd02892 SQCY_1 Squalene cyclas 91.5 0.34 7.5E-06 45.7 5.3 51 124-174 49-107 (634)
14 PLN03012 Camelliol C synthase 90.7 0.6 1.3E-05 45.2 6.1 55 120-174 589-651 (759)
15 TIGR01507 hopene_cyclase squal 90.2 0.61 1.3E-05 44.3 5.7 55 120-174 470-531 (635)
16 PLN02993 lupeol synthase 89.2 0.94 2E-05 43.9 6.2 55 120-174 589-651 (763)
17 TIGR03463 osq_cycl 2,3-oxidosq 88.9 1 2.2E-05 42.8 6.1 60 120-181 476-542 (634)
18 TIGR01787 squalene_cyclas squa 87.6 1.1 2.4E-05 42.4 5.5 51 124-174 49-107 (621)
19 PF13243 Prenyltrans_1: Prenyl 81.9 0.43 9.3E-06 33.9 -0.0 56 123-181 1-63 (109)
20 cd02889 SQCY Squalene cyclase 71.9 12 0.00026 31.9 6.1 25 117-141 113-137 (348)
21 cd02889 SQCY Squalene cyclase 62.7 4.6 0.0001 34.5 1.7 50 123-172 1-56 (348)
22 PF13249 Prenyltrans_2: Prenyl 59.7 6.1 0.00013 27.8 1.6 54 126-181 47-109 (113)
23 PF08102 Antimicrobial_7: Scor 56.5 32 0.00068 21.0 4.0 31 107-137 12-42 (43)
24 PF00432 Prenyltrans: Prenyltr 47.3 27 0.00058 20.8 2.9 19 123-141 3-21 (44)
25 PLN02592 ent-copalyl diphospha 40.7 33 0.00071 33.8 3.7 53 123-175 117-177 (800)
26 KOG1062 Vesicle coat complex A 39.4 63 0.0014 31.8 5.3 67 99-173 291-357 (866)
27 cd02891 A2M_like Proteins simi 37.2 1.1E+02 0.0023 25.1 5.9 57 118-174 46-113 (282)
28 cd02896 complement_C3_C4_C5 Pr 34.5 76 0.0016 26.9 4.7 24 118-141 100-123 (297)
29 cd00688 ISOPREN_C2_like This g 31.8 1.5E+02 0.0033 23.4 5.9 57 118-174 101-172 (300)
30 cd00688 ISOPREN_C2_like This g 31.7 82 0.0018 25.0 4.3 54 120-173 205-269 (300)
31 PLN02279 ent-kaur-16-ene synth 27.0 35 0.00075 33.5 1.5 53 123-177 75-139 (784)
32 KOG1026 Nerve growth factor re 23.4 48 0.001 32.5 1.6 135 25-175 599-763 (774)
33 cd08031 LARP_4_5_like La RNA-b 22.9 1.4E+02 0.0029 20.4 3.4 51 130-184 23-73 (75)
34 PF07678 A2M_comp: A-macroglob 21.7 3.5E+02 0.0075 22.1 6.4 58 117-179 109-166 (246)
35 KOG2126 Glycosylphosphatidylin 21.4 1.7E+02 0.0036 29.2 4.8 55 121-183 189-264 (895)
36 cd08035 LARP_4 La RNA-binding 20.2 1.8E+02 0.0039 20.0 3.6 50 131-184 24-73 (75)
No 1
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=6.4e-58 Score=426.63 Aligned_cols=185 Identities=71% Similarity=1.379 Sum_probs=178.1
Q ss_pred CceeeeCCCCCCCCcchhccCCCCCCCCCCcchhhhhhhhhhhhhhcCcccccCCchhhhHHhhhccCCCCCCCcccccc
Q 039627 1 ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYRDIHWSKMRH 80 (185)
Q Consensus 1 llG~y~W~~v~~iPpEl~LLP~w~P~~~~~~~~~~R~v~vPl~il~~~r~~~~~~~~~~~lr~EL~~~~~~~i~w~~~r~ 80 (185)
+||+|+|+|+|+|||||||||+|+||||+|||||||+||+||+|||++||++|+++++.+||+|||++||++|||.++|+
T Consensus 227 ~lG~y~W~g~np~PpElwLLP~~~P~hp~~~~~~~R~vy~Pmsyly~~R~~~~~~~~i~~lr~ELy~~py~~i~w~~~r~ 306 (759)
T PLN03012 227 ILGVFDWSGSNPMPPEFWILPSFFPIHPAKMWCYCRLVYLPMSYLYGKRFVGPISPLILQLREEIYLQPYAEINWMKARH 306 (759)
T ss_pred HcCccccCCCCCCChhHHHccCcCCccHHHHHHHHHHHHHHHHHHhcCCccccCCchhhhhHHHhCCCCccccChhhhcc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCCchhhHHHHHHHHHHhhhhhccCCC-ChHHHHHHHHHHHHHHHHHhcCCCeeeeccchhHHHHHHhhccCC
Q 039627 81 FCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWP-LNQLREKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCWVEDP 159 (185)
Q Consensus 81 ~~~~~d~y~p~~~~~~~~~~~l~~~~~~~~~~~~-~~~lR~~A~~~a~~~i~~~~e~t~~~~i~p~~~~~~ml~~lg~~~ 159 (185)
+||++|+|+||+++++++|..||.++|+++..++ +++||++|+++|++||+.|+|+|.|.||+||++++|||+|++++|
T Consensus 307 ~~a~~D~y~p~~~~~~~~~~~l~~~~~~~l~~~~~~~~LR~~Al~~a~~~I~~ed~~t~y~~i~pv~~~l~ml~~~~~~p 386 (759)
T PLN03012 307 LCAKEDAYCPHPLIQDLIWDCLYIFAEPFLACWPFNKLLREKALGLAMKHIHYEDENSRYITIGCVEKALCMLACWVEDP 386 (759)
T ss_pred ccccccccCCchHHHhhhHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhcCCCCCEeeHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999998874443 346999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhhhhhceEecCCceeeC
Q 039627 160 NSDYFKKHLSRISEYLWVGEDGMKVQ 185 (185)
Q Consensus 160 d~p~~~~~~~~l~~~l~~~~dg~~~Q 185 (185)
|||.||+|++||+||+|+++|||+||
T Consensus 387 ~~~~~k~hl~ri~d~lw~~~dGm~~q 412 (759)
T PLN03012 387 NGDHFKKHLLRISDYLWIAEDGMKMQ 412 (759)
T ss_pred CCHHHHHHHHHhhhcEEEeCCceEEc
Confidence 99999999999999999999999998
No 2
>PLN02993 lupeol synthase
Probab=100.00 E-value=2.4e-56 Score=416.69 Aligned_cols=185 Identities=69% Similarity=1.351 Sum_probs=176.4
Q ss_pred CceeeeCCCCCCCCcchhccCCCCCCCCCCcchhhhhhhhhhhhhhcCcccccCCchhhhHHhhhccCCCCCCCcccccc
Q 039627 1 ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYRDIHWSKMRH 80 (185)
Q Consensus 1 llG~y~W~~v~~iPpEl~LLP~w~P~~~~~~~~~~R~v~vPl~il~~~r~~~~~~~~~~~lr~EL~~~~~~~i~w~~~r~ 80 (185)
+||+|||+|+|+|||||||||+|+||||+|||||||+||+||+||+++||++|+++++.+||+|||++||++|||.++|+
T Consensus 227 llG~y~W~g~~p~PpElwLLP~~~P~hp~~~~~~~R~v~vPmsyl~~~r~~~~~~~~i~~lr~ELy~~py~~i~~~~~r~ 306 (763)
T PLN02993 227 ILGIYDWSGTNPMPPEIWLLPSFLPIHLGKTLCYTRMVYMPMSYLYGKRFVGPITPLIMLLREELHLQPYEEINWNKARR 306 (763)
T ss_pred HcCCcccCCCCCCChhHHHccCcCCccHHHhHHhhhhhHHhHHHHhcCCcccCCCchhhhhhHHhccCCchhcChHhhcC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCCchhhHHHHHHHHHHhhhhhccCCCC-hHHHHHHHHHHHHHHHHHhcCCCeeeeccchhHHHHHHhhccCC
Q 039627 81 FCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPL-NQLREKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCWVEDP 159 (185)
Q Consensus 81 ~~~~~d~y~p~~~~~~~~~~~l~~~~~~~~~~~~~-~~lR~~A~~~a~~~i~~~~e~t~~~~i~p~~~~~~ml~~lg~~~ 159 (185)
.|+++|+|+||+++++.++..+.+.+++++.+++. ++||++|+++|+++|..++|+|+|+||+||++++||++||+++|
T Consensus 307 ~~~~~d~y~p~~~~~~~~~~~l~~~~~~~l~~~p~~~~lR~~Al~~a~~~i~~ed~~t~y~~i~~vn~~l~ml~~~~~~p 386 (763)
T PLN02993 307 LCAKEDMYYPHPLVQDLIWDTLHNFVEPFLTRWPLNKLVREKALQVAMKHIHYEDENSHYITIGCVEKVLCMLACWIENP 386 (763)
T ss_pred CccccCCCCCchHHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHhCCCC
Confidence 99999999999998888888888888888755532 46999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhhhhhceEecCCceeeC
Q 039627 160 NSDYFKKHLSRISEYLWVGEDGMKVQ 185 (185)
Q Consensus 160 d~p~~~~~~~~l~~~l~~~~dg~~~Q 185 (185)
|||.|++|+++|+||+|+++|||+||
T Consensus 387 ~~~~~~~~l~ri~d~lw~~edgm~~q 412 (763)
T PLN02993 387 NGDHFKKHLARIPDYMWVAEDGMKMQ 412 (763)
T ss_pred CCHHHHHHHHHhhhcEEEeCCceEEc
Confidence 99999999999999999999999998
No 3
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=5.9e-52 Score=376.67 Aligned_cols=185 Identities=67% Similarity=1.310 Sum_probs=180.8
Q ss_pred CceeeeCCCCCCCCcchhccCCCCCCCCCCcchhhhhhhhhhhhhhcCcccccCCchhhhHHhhhccCCCCCCCcccccc
Q 039627 1 ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYRDIHWSKMRH 80 (185)
Q Consensus 1 llG~y~W~~v~~iPpEl~LLP~w~P~~~~~~~~~~R~v~vPl~il~~~r~~~~~~~~~~~lr~EL~~~~~~~i~w~~~r~ 80 (185)
++|+|+|+|+||+|||+|+||.|+|+|++++|||+|.||+||+|+|++|++++.+|++..||+|||++||++|||.++||
T Consensus 227 vLgvydWsG~np~pPElwllP~~~P~h~g~~w~~~R~vy~pmsYlygkrfv~~~tpli~~LreELy~~py~~Inw~~~Rn 306 (760)
T KOG0497|consen 227 VLGVYDWSGVNPLPPELWLLPSFLPIHPGTLWCHCRDVYMPMSYLYGKRFVAPPTPLILQLREELYPEPYDKINWSKARN 306 (760)
T ss_pred hcccccCcCCCCCCchhhccccccCCCCCceEEEecceecccccceeeeeeccCChHHHHHhhhhcCCChhhhhHHHHhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCCchhhHHHHHHHHHHhhhhhccCCCChHHHHHHHHHHHHHHHHHhcCCCeeeeccchhHHHHHHhhccCCC
Q 039627 81 FCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLREKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCWVEDPN 160 (185)
Q Consensus 81 ~~~~~d~y~p~~~~~~~~~~~l~~~~~~~~~~~~~~~lR~~A~~~a~~~i~~~~e~t~~~~i~p~~~~~~ml~~lg~~~d 160 (185)
.||++|+|+||+.+++.+|+.|..+.+.++++|+.+-+|++|++.++++|..+||+|+|++|+|++++++|++||.++|+
T Consensus 307 ~~akeDlyyphs~i~D~l~~~l~~~~e~ll~rWp~~~~R~~a~~~~me~ihyede~t~yi~ig~v~k~~~ml~cwvedp~ 386 (760)
T KOG0497|consen 307 LCAKEDLYYPHSLLQDLLWALLHKFSEPLLNRWPLKLIREKALRTAMELIHYEDENTRYITIGPVNKAFNMLACWVEDPN 386 (760)
T ss_pred ccccccccCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhcccCceecccchhhhcceeeeeeccc
Confidence 99999999999999999999998888888888977778999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhhhhhceEecCCceeeC
Q 039627 161 SDYFKKHLSRISEYLWVGEDGMKVQ 185 (185)
Q Consensus 161 ~p~~~~~~~~l~~~l~~~~dg~~~Q 185 (185)
+..|++|+.|++||+|+++|||+||
T Consensus 387 s~~Fkkhl~Ri~d~lw~gedGmkmq 411 (760)
T KOG0497|consen 387 SDAFKKHLARIPDFLWIAEDGMKMQ 411 (760)
T ss_pred hHHHHHHhccccCeEEEcCCCceEe
Confidence 9999999999999999999999998
No 4
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=100.00 E-value=3e-51 Score=379.66 Aligned_cols=180 Identities=34% Similarity=0.677 Sum_probs=169.4
Q ss_pred CceeeeCCCCCCCCcchhccCCCCCCCCCCcchhhhhhhhhhhhhhcCcccccCCchhhhHHhhhccCCCCCCCcccccc
Q 039627 1 ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYRDIHWSKMRH 80 (185)
Q Consensus 1 llG~y~W~~v~~iPpEl~LLP~w~P~~~~~~~~~~R~v~vPl~il~~~r~~~~~~~~~~~lr~EL~~~~~~~i~w~~~r~ 80 (185)
+||+|||+++|+|||||||||+||||||||||||+|+|++||+||+++||++++++++.+||+|||++||++|||.+.|+
T Consensus 120 ~~g~~~W~~~~~~P~El~lLP~~~P~~~~~~~~~~R~v~~p~~~l~~~r~~~~~~~~~~~l~~EL~~~~~~~~~~~~~~~ 199 (634)
T TIGR03463 120 LLGLYGRGGLQPVPPELWLLPESLPFHPSRFYCHTRMVYLPMSWLYGRRARAPLTPLRAALRQELYDGGYGQVDFVAARE 199 (634)
T ss_pred HcCcCCcccCCCCCHHHHHccccCCcCHHHHHHHhHHHHHhHHHHhcCCcccCCCcchhhhhHHhccCCccccccccccC
Confidence 58999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred CCCCCCCcCCchhhHHHHHHHHHHhhhhhccCCCChHHHHHHHHHHHHHHHHHhcCCCeeeeccchhHHHHHHhhccCCC
Q 039627 81 FCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLREKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCWVEDPN 160 (185)
Q Consensus 81 ~~~~~d~y~p~~~~~~~~~~~l~~~~~~~~~~~~~~~lR~~A~~~a~~~i~~~~e~t~~~~i~p~~~~~~ml~~lg~~~d 160 (185)
.++++|+|+|+++++..++..| ..+++. ++++||++|+++|++||++|+|+||+.||.||+++++|++++|+++|
T Consensus 200 ~~~~~d~~~p~~~~~~~~~~~l-~~~~~~----~~~~lr~~A~~~~~~~i~~~~~~~~~~~i~p~~~~~~~l~~~g~~~~ 274 (634)
T TIGR03463 200 RVAPTDVFTPRTFWLRAANQVM-YGYERL----AGKQLRARALDFCLEQIRAEDEATHYICISPVNGVLNMLAWFAVNPD 274 (634)
T ss_pred ccccccccCCcHHHHHHHHHHH-HHhhcc----CCHHHHHHHHHHHHHHHHHHhcCCCeEehHHHHHHHHHHHHhCCCCC
Confidence 9999999999998777777766 345543 36779999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhhhhhceEecCC-ceeeC
Q 039627 161 SDYFKKHLSRISEYLWVGED-GMKVQ 185 (185)
Q Consensus 161 ~p~~~~~~~~l~~~l~~~~d-g~~~Q 185 (185)
||.+++|+++|++|+|+++| ||+||
T Consensus 275 ~p~~~k~l~~l~~~~~~~~~~g~~~q 300 (634)
T TIGR03463 275 GPEVAAHLEGLEDYRYEDDDRGLRYN 300 (634)
T ss_pred CHHHHHHHHHHHhhEEEcCCCCEEEe
Confidence 99999999999999999999 89987
No 5
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=100.00 E-value=2.2e-44 Score=334.30 Aligned_cols=177 Identities=47% Similarity=0.903 Sum_probs=160.0
Q ss_pred CceeeeCCCCCCCCcchhccCCCCCCCCCCcchhhhhhhhhhhhhhcCcccccCCchhhhHHhhhccCCCCCCCcccccc
Q 039627 1 ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYRDIHWSKMRH 80 (185)
Q Consensus 1 llG~y~W~~v~~iPpEl~LLP~w~P~~~~~~~~~~R~v~vPl~il~~~r~~~~~~~~~~~lr~EL~~~~~~~i~w~~~r~ 80 (185)
+||+|||+++|+|||||||||+|+|||||+||||+|+|++||+||+++||++|.+++...+|+|||++|+++|+|..+|+
T Consensus 123 ~~G~~~W~~~~~~P~El~llP~~~p~~~~~~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~ 202 (634)
T cd02892 123 LLGVYPWEGVPPLPPELWLLPSWLPFHPYKFWCWARTVYVPMSYLYGKRPVAPITPLVLSLRDELYVEPYEKINWYKHRN 202 (634)
T ss_pred HcCccccccCCCCCHhHHhcCCcCCccHHHHHHHHHHHHHhHHHHhcCCcccCCCCccccchHHhCCCCccccccccccc
Confidence 58999999999999999999999999999999999999999999999999999888888889999999999999998888
Q ss_pred CCCCCCCcCCchhhHHHHHHHHHHhhhhhccCCCChHHHHHHHHHHHHHHHHHhcCCCeeeeccchhHHHHHHhhccC-C
Q 039627 81 FCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLREKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCWVED-P 159 (185)
Q Consensus 81 ~~~~~d~y~p~~~~~~~~~~~l~~~~~~~~~~~~~~~lR~~A~~~a~~~i~~~~e~t~~~~i~p~~~~~~ml~~lg~~-~ 159 (185)
++.|.+.|+++++..++..+ ..++++ ++++||++|+++|++||++|||+||++|..|++.+++|++++..+ +
T Consensus 203 --~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~lr~~a~~~~~~~i~~~q~~~g~~~~~~~~~~l~~lal~~~g~~ 275 (634)
T cd02892 203 --DLYDYRPPWQRLFDALDRLL-HWYEPL----PPKPLRRKALRKAYEWILYRDENTGYLGIIPPPKANNMLALWVLGYP 275 (634)
T ss_pred --ccccCCCChHHHHHHHHHHH-HHHHhc----CcHHHHHHHHHHHHHHHHHHhcCCCceeeeehHHHHHHHHHHHcCCC
Confidence 88899998888777676665 345543 367799999999999999999999999999999999998888444 8
Q ss_pred CCHHHHHHHhhhhhceEecCCceee
Q 039627 160 NSDYFKKHLSRISEYLWVGEDGMKV 184 (185)
Q Consensus 160 d~p~~~~~~~~l~~~l~~~~dg~~~ 184 (185)
|||.+++|++++++|+|..+||+.+
T Consensus 276 ~~~~~~~~l~~l~~~~~~~~~g~~~ 300 (634)
T cd02892 276 DSPAFKRHLERIDDFLWLGPEGMKM 300 (634)
T ss_pred CCHHHHHHHHHHHhcEEEecCCcEE
Confidence 9999999999999999999888754
No 6
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=100.00 E-value=2.2e-40 Score=307.14 Aligned_cols=166 Identities=20% Similarity=0.272 Sum_probs=140.1
Q ss_pred CceeeeCCCCCCCCcchhccCCCCCCCCCCcchhhhhhhhhhhhhhcCcccccCCchhhhHH-hhhccCCCCCCCccccc
Q 039627 1 ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQLR-EEIYTQPYRDIHWSKMR 79 (185)
Q Consensus 1 llG~y~W~~v~~iPpEl~LLP~w~P~~~~~~~~~~R~v~vPl~il~~~r~~~~~~~~~~~lr-~EL~~~~~~~i~w~~~r 79 (185)
+||+|||+++|+|||||||||+|||||||+||||+|+|+|||+||+++||+++++ .++| +|||.+++++ .|
T Consensus 139 l~G~~~W~~~~~~P~El~llP~~~p~~~~~~~~~~R~~~~P~~~l~~~r~~~~~~---~~~~~~eL~~~~~~~-----~~ 210 (635)
T TIGR01507 139 LVGEYPWRGVPMVPPEIMLLPKRFPFNIYEFSSWARATVVPLSIVCSRKPVFPLP---ERARVPELYETDVPK-----PR 210 (635)
T ss_pred HcCCcCcccCCCCCHHHHhCCCcCCccHHHHHHHHHHHHHHHHHHhcCCCccCCC---cccChHhhcCCChHH-----hc
Confidence 5899999999999999999999999999999999999999999999999999876 3454 9999998853 45
Q ss_pred cCCCCCCCcCCchh-hHHHHHHHHHHhhhhhccCCCChHHHHHHHHHHHHHHHHHhcCCC-eeeeccchhHHHHHHhh--
Q 039627 80 HFCAKEDIFFPHTS-VQNLLWDTLYNVVEPVLNRWPLNQLREKSLEIAMNHIHYEDEASR-YMTIGCVEKPLNMLSCW-- 155 (185)
Q Consensus 80 ~~~~~~d~y~p~~~-~~~~~~~~l~~~~~~~~~~~~~~~lR~~A~~~a~~~i~~~~e~t~-~~~i~p~~~~~~ml~~l-- 155 (185)
+.+++.| +++ ++..+++.+ ..++++ .+++||++|+++|++||++|||+|| +.+|.| +++|||++|
T Consensus 211 ~~~~~~~----~~~~~~~~~~~~l-~~~~~l----~~~~lr~~A~~~a~~~i~~~~e~~g~~~~i~p--~~~~~l~~l~~ 279 (635)
T TIGR01507 211 RRGAKGG----TGWGIFDALDRAL-HGYEKL----SVHPFRRAAEIRALDWLLERQAGDGSWGGIQP--AMFNALIALKI 279 (635)
T ss_pred ccCCccC----CcHHHHHHHHHHH-HHHHhc----CCcHHHHHHHHHHHHHHHHHHcCCCceeecch--HHHHHHHHHHH
Confidence 5555555 244 555555555 345543 3567999999999999999999998 776766 788888888
Q ss_pred -ccCCCCHHHHHHHhhhhhceEecCCceeeC
Q 039627 156 -VEDPNSDYFKKHLSRISEYLWVGEDGMKVQ 185 (185)
Q Consensus 156 -g~~~d~p~~~~~~~~l~~~l~~~~dg~~~Q 185 (185)
|+++|||.+++|++++++|+|.++||+++|
T Consensus 280 ~g~~~~~~~~~~~l~~l~~~~~~~~~g~~~~ 310 (635)
T TIGR01507 280 LGMTQHDAFIKLGWEGIDLYGVELDDSWMFQ 310 (635)
T ss_pred cCCCCCCHHHHHHHHHHHHheEecCCceEec
Confidence 677999999999999999999999998886
No 7
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=100.00 E-value=1.5e-37 Score=287.83 Aligned_cols=166 Identities=43% Similarity=0.839 Sum_probs=143.9
Q ss_pred CceeeeCCCCCCCCcchhccCCCCCCCCCCcchhhhhhhhhhhhhhcCcccccCCchhhhHHhhhccCCCCCCCcccccc
Q 039627 1 ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYRDIHWSKMRH 80 (185)
Q Consensus 1 llG~y~W~~v~~iPpEl~LLP~w~P~~~~~~~~~~R~v~vPl~il~~~r~~~~~~~~~~~lr~EL~~~~~~~i~w~~~r~ 80 (185)
+||+|||+++|+|||||||||+|+|||++++|||+|+|++||+|++++|++.|.++ |+|||++| +++ .+.|+
T Consensus 123 ~~G~~~W~~~~~~P~El~llP~~~p~~~~~~w~~~~~v~l~~~~~~~~~~~~~~~~-----~~el~~~~-~~~--~~~~~ 194 (621)
T TIGR01787 123 LLGVYPWEGVPPLPPEIMLLPKWLPIHPSKSWCRCRMVYLPMSYCYGERLSAPIDP-----REELYVED-DSI--RAQRN 194 (621)
T ss_pred HcCccccccCCCCCHhHHhcCcccCcCcchhhhhhhhHHHHHHHHcCccccCCCCc-----chhhcCCC-cch--hhccC
Confidence 68999999999999999999999999999999999999999999999999998766 69999998 766 35778
Q ss_pred CCCCCCCcCCchhhHHHHHHHHHHhhhhhccCCCChH-HHHHHHHHHHHHHHHHhcCCCeeeeccchhHHHHHHhhccC-
Q 039627 81 FCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQ-LREKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCWVED- 158 (185)
Q Consensus 81 ~~~~~d~y~p~~~~~~~~~~~l~~~~~~~~~~~~~~~-lR~~A~~~a~~~i~~~~e~t~~~~i~p~~~~~~ml~~lg~~- 158 (185)
.++++|+|+|++++.+.++..+ +.+ .++ +|+.|+++|++||++++|.+|++ ++++++++|++++..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~a~~~a~~~~~~~~~~~g~~--~~i~~~~~~~al~~~g~ 263 (621)
T TIGR01787 195 NVAKEDLYTPHSWLLRALYGLL-----NLF----YHPFLRKALRKRALQWLYEHIAADGSI--GPISKAMAMLALWFLDG 263 (621)
T ss_pred CCCcccccccHHHHHHHHHHHH-----hhc----ccccccHHHHHHHHHHHHHHhccCCCc--hhHhHHHHHHHHHHcCC
Confidence 8899999999887665443322 222 122 49999999999999999999955 8999999999888544
Q ss_pred CCCHHHHHHHhhhhhceEecCCceeeC
Q 039627 159 PNSDYFKKHLSRISEYLWVGEDGMKVQ 185 (185)
Q Consensus 159 ~d~p~~~~~~~~l~~~l~~~~dg~~~Q 185 (185)
+|||.+++|+++|++|+|+++|||+||
T Consensus 264 ~d~p~~~~~l~~l~~~~~~~~dg~~~q 290 (621)
T TIGR01787 264 PNSPAFQKHLQRIDDYLWLQLDGMKMQ 290 (621)
T ss_pred CCCHHHHHHHHHHhhcEEEeCCccEEe
Confidence 599999999999999999999999987
No 8
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=99.43 E-value=6.7e-14 Score=126.63 Aligned_cols=150 Identities=21% Similarity=0.288 Sum_probs=108.0
Q ss_pred CceeeeCCCCCCCCcchhccCCCCCCCCCCcchhhhhhhhhhhhhhcCcccccCCchhhhHHhhhccCCCCCCCcccccc
Q 039627 1 ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYRDIHWSKMRH 80 (185)
Q Consensus 1 llG~y~W~~v~~iPpEl~LLP~w~P~~~~~~~~~~R~v~vPl~il~~~r~~~~~~~~~~~lr~EL~~~~~~~i~w~~~r~ 80 (185)
++|+|.|. +++.|++.|+||.-+|+|++++|||+|.+++| + ..+ .. +++|+.+
T Consensus 39 ~~~~y~w~-~~~~p~~~~~lp~~~p~~~~~~~~~~r~~~~p---~--------~~~---~~-~~~~~~~----------- 91 (517)
T COG1657 39 VLGAYIWR-APSAPPWVMLLPNTLPVHFYQMSSWARSSTVP---L--------IAP---AS-DPLLTEG----------- 91 (517)
T ss_pred Hhcceeec-cCCCCchHhhCCCcccchHHHHHHHhhhcccc---c--------ccc---cc-ccccccc-----------
Confidence 47999999 99999999999999999999999999999999 1 111 11 3444222
Q ss_pred CCCCCCCcCCchhhHHHHHHHHHHhhhhhccCCCChHHHHHHHHHHHHHHHHHhcCCCeeeeccchhHHHHHHhhc-cCC
Q 039627 81 FCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLREKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCWV-EDP 159 (185)
Q Consensus 81 ~~~~~d~y~p~~~~~~~~~~~l~~~~~~~~~~~~~~~lR~~A~~~a~~~i~~~~e~t~~~~i~p~~~~~~ml~~lg-~~~ 159 (185)
+...++++|++....-++..+....+... +.+..+++.+ +.++.|++++|+.+|.+. ++++.++++.+.+. .+.
T Consensus 92 -~~~~~l~yp~~~~~~r~~~~~~~~~~~~~-~~~~~~~~~~--~~a~l~~~e~Qn~dg~w~-g~v~aa~~~~~~l~~lg~ 166 (517)
T COG1657 92 -VKNVLLLYPTSGDVERLLLLLDHYFKRGF-PAPVTSLRVR--KEAELWKLERQNDDGSWR-GIVNAASNVVLSLVVLGL 166 (517)
T ss_pred -ccceeEEcCCcchHHHHHHHHHHHHhhcc-Cccchhhhhh--hhhheeeeeecccccccc-cchhhhhHHHHHHHHhhh
Confidence 44567888886643322222222233232 3346677777 889999999998888664 99999999988884 344
Q ss_pred CC-HHHHHHHhhhhhceEecCCce
Q 039627 160 NS-DYFKKHLSRISEYLWVGEDGM 182 (185)
Q Consensus 160 d~-p~~~~~~~~l~~~l~~~~dg~ 182 (185)
++ ..++++..+..++.+++..|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~ 190 (517)
T COG1657 167 DSNEPFQRRELRAEDSELVKAVGR 190 (517)
T ss_pred ccchHhhhhhhhhhhhhhhccccc
Confidence 44 788888888887777766654
No 9
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=94.34 E-value=0.022 Score=52.43 Aligned_cols=132 Identities=13% Similarity=0.052 Sum_probs=98.7
Q ss_pred ceeeeCC--CCCCCCcchhccCCCCCCCCCCcchhhhhhhhhhhhhhcCcccccCC---chhhhHHhhhccCCCCCCCcc
Q 039627 2 LGVYDWS--GCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPIT---PLILQLREEIYTQPYRDIHWS 76 (185)
Q Consensus 2 lG~y~W~--~v~~iPpEl~LLP~w~P~~~~~~~~~~R~v~vPl~il~~~r~~~~~~---~~~~~lr~EL~~~~~~~i~w~ 76 (185)
++.|.+. +.|.-++.-|||+.+-|.+.+..+.+-+.+|.+|..+.+.+...+.. ..+..+++.|........+|.
T Consensus 342 ~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g~w~v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~ 421 (517)
T COG1657 342 LNAYLEAYDGQPIERALEWLLSDQEPDGSWYGRWGVCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWG 421 (517)
T ss_pred hhhccccccCCcccHHHhhhhhhccccCceeeEEEEEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCcc
Confidence 4567763 67888899999999999999999999999999999999999887544 346677799987777788899
Q ss_pred ccccCCCCCCCcCCchhhHHHHHHHHHHhhhhhccCCCChHHHHHHHHHHHHHHHHHhcCCCee
Q 039627 77 KMRHFCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLREKSLEIAMNHIHYEDEASRYM 140 (185)
Q Consensus 77 ~~r~~~~~~d~y~p~~~~~~~~~~~l~~~~~~~~~~~~~~~lR~~A~~~a~~~i~~~~e~t~~~ 140 (185)
.....++..+.+.+.+.+.....+++-..+.-.. .++.+++.-.++....+|.+|..
T Consensus 422 e~~~~~~~~~~~~t~~sl~~~~~wal~~~~~a~~-------~~~~~i~~~~~~~~~~~~~~g~~ 478 (517)
T COG1657 422 EAKEAISDPVYTGTESSLLVQTNWALIALLTALE-------PNQEAIKPGINLLVSDQEPDGSW 478 (517)
T ss_pred cccccccccccccccchhhcchhHHHHHHHHhcc-------cchhhhcccccccccCcCCCCcc
Confidence 8888888888888876655433333322222111 16677888888888887766543
No 10
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=92.75 E-value=0.33 Score=41.01 Aligned_cols=58 Identities=17% Similarity=0.196 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeee-ec-------------cchhHHHHHHhh---ccCCCCHHHHHHHhhhhhce
Q 039627 118 LREKSLEIAMNHIHYEDEASRYMT-IG-------------CVEKPLNMLSCW---VEDPNSDYFKKHLSRISEYL 175 (185)
Q Consensus 118 lR~~A~~~a~~~i~~~~e~t~~~~-i~-------------p~~~~~~ml~~l---g~~~d~p~~~~~~~~l~~~l 175 (185)
+.+.+++++.+|++.+|+.+|.++ .+ .+.-+.+++.++ |+..+++.++++++-|.+..
T Consensus 99 v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~ 173 (292)
T cd02897 99 IDENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAAL 173 (292)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhc
Confidence 668899999999999998888664 11 122344455555 56567899999999887654
No 11
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=92.10 E-value=0.11 Score=49.19 Aligned_cols=72 Identities=4% Similarity=-0.289 Sum_probs=62.3
Q ss_pred ceeeeCCCCCCCCcchhccCCCCCCCCCCcchhhhhhhhhhhhhhcCcccccCCchhhhHHhhhccCCCCCC
Q 039627 2 LGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYRDI 73 (185)
Q Consensus 2 lG~y~W~~v~~iPpEl~LLP~w~P~~~~~~~~~~R~v~vPl~il~~~r~~~~~~~~~~~lr~EL~~~~~~~i 73 (185)
|.++||...+..++++++++.|++++.|.+++.-+.++.||.+.+..+...+.-..+.-.+.+.++..++.+
T Consensus 243 lwllP~~~P~h~g~~w~~~R~vy~pmsYlygkrfv~~~tpli~~LreELy~~py~~Inw~~~Rn~~akeDly 314 (760)
T KOG0497|consen 243 LWLLPSFLPIHPGTLWCHCRDVYMPMSYLYGKRFVAPPTPLILQLREELYPEPYDKINWSKARNLCAKEDLY 314 (760)
T ss_pred hhccccccCCCCCceEEEecceecccccceeeeeeccCChHHHHHhhhhcCCChhhhhHHHHhhcccccccc
Confidence 457999999999999999999999999999999999999999999999887655556667788887766544
No 12
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=91.61 E-value=0.19 Score=35.84 Aligned_cols=53 Identities=11% Similarity=0.098 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhcCCCeeeeccch------hHHHHHHhhccCCCCHHHHHHHhhhhh
Q 039627 121 KSLEIAMNHIHYEDEASRYMTIGCVE------KPLNMLSCWVEDPNSDYFKKHLSRISE 173 (185)
Q Consensus 121 ~A~~~a~~~i~~~~e~t~~~~i~p~~------~~~~ml~~lg~~~d~p~~~~~~~~l~~ 173 (185)
.|++++.+|++.+|+.+|.++..+-. .++.+++..+..++++.++|+++=|.+
T Consensus 46 ~ai~ka~~~l~~~Q~~dG~w~~~~~~~~~~t~~~~~~l~~~~~~~~~~~~~r~~~wi~~ 104 (109)
T PF13243_consen 46 EAIKKAIDWLLSHQNPDGGWGYSGGEYVSMTAAAIAALALAGVYPDDEAVERGLEWILS 104 (109)
T ss_dssp BSSHHHHHHHHH---TTS--S-TS--HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 45799999999999999866533322 122223333566799999999985543
No 13
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=91.52 E-value=0.34 Score=45.75 Aligned_cols=51 Identities=6% Similarity=-0.081 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCCeeeecc-----chhHHHHHHhh---ccCCCCHHHHHHHhhhhhc
Q 039627 124 EIAMNHIHYEDEASRYMTIGC-----VEKPLNMLSCW---VEDPNSDYFKKHLSRISEY 174 (185)
Q Consensus 124 ~~a~~~i~~~~e~t~~~~i~p-----~~~~~~ml~~l---g~~~d~p~~~~~~~~l~~~ 174 (185)
++..+|+..+|..+|.+++-+ |+.|+...++| |+++|+|.++||.+-|.+-
T Consensus 49 ~~~~~~l~~~q~~dGgw~~~~~~~~~~~~T~~~Y~aLrl~G~~~~~~~m~~Ar~~i~~~ 107 (634)
T cd02892 49 KEIARYLRNHQNPDGGWGLHHEGPSTMFGTVLNYVALRLLGVSPDDPHMVKARNWILSH 107 (634)
T ss_pred HHHHHHHHHhccCCCCccCCCCCCcchHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 346799999998888887443 77777776666 8999999999999877654
No 14
>PLN03012 Camelliol C synthase
Probab=90.74 E-value=0.6 Score=45.20 Aligned_cols=55 Identities=9% Similarity=-0.056 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHhcCCCeee----eccchhHHHHHHhh---ccC-CCCHHHHHHHhhhhhc
Q 039627 120 EKSLEIAMNHIHYEDEASRYMT----IGCVEKPLNMLSCW---VED-PNSDYFKKHLSRISEY 174 (185)
Q Consensus 120 ~~A~~~a~~~i~~~~e~t~~~~----i~p~~~~~~ml~~l---g~~-~d~p~~~~~~~~l~~~ 174 (185)
+.++++|.+||+..|+.+|.++ +-+...|...|.+| |.. ++++.++||++=|.+-
T Consensus 589 ~~~i~rAv~~L~~~Q~~DGsW~G~Wgv~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~ 651 (759)
T PLN03012 589 NAFIKKAAEYIENIQMLDGSWYGNWGICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAA 651 (759)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccccccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHh
Confidence 6799999999999999987443 55555665555555 665 6779999999966544
No 15
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=90.18 E-value=0.61 Score=44.25 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhcCCCee----eeccchhHHHHHHhh---ccCCCCHHHHHHHhhhhhc
Q 039627 120 EKSLEIAMNHIHYEDEASRYM----TIGCVEKPLNMLSCW---VEDPNSDYFKKHLSRISEY 174 (185)
Q Consensus 120 ~~A~~~a~~~i~~~~e~t~~~----~i~p~~~~~~ml~~l---g~~~d~p~~~~~~~~l~~~ 174 (185)
+.++++|.+||+..|+++|.+ ++.++..|..++.+| |.+.+++.++++++=|.+-
T Consensus 470 ~~~i~rav~~L~~~Q~~dG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~ 531 (635)
T TIGR01507 470 WPVIERAVEYLKREQEPDGSWFGRWGVNYLYGTGAVLSALKAVGIDTREPYIQKALAWLESH 531 (635)
T ss_pred hHHHHHHHHHHHHccCCCCCCccCCCCccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHh
Confidence 689999999999999999854 344444555544444 6667899999999977654
No 16
>PLN02993 lupeol synthase
Probab=89.25 E-value=0.94 Score=43.93 Aligned_cols=55 Identities=15% Similarity=0.050 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhcCCCee-e---eccchhHHHHHHhh---ccC-CCCHHHHHHHhhhhhc
Q 039627 120 EKSLEIAMNHIHYEDEASRYM-T---IGCVEKPLNMLSCW---VED-PNSDYFKKHLSRISEY 174 (185)
Q Consensus 120 ~~A~~~a~~~i~~~~e~t~~~-~---i~p~~~~~~ml~~l---g~~-~d~p~~~~~~~~l~~~ 174 (185)
+.++++|.+||+..|+.+|.+ | +.++..|...|.+| |.. .+++.++||++=|.+-
T Consensus 589 ~~~i~rAv~yL~~~Q~~DGSW~G~Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~ 651 (763)
T PLN02993 589 IKSIEKAVQFIESKQTPDGSWYGNWGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTI 651 (763)
T ss_pred HHHHHHHHHHHHHhcCCCCCcccccccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh
Confidence 679999999999999998855 3 55544555555555 666 4569999999966553
No 17
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=88.93 E-value=1 Score=42.78 Aligned_cols=60 Identities=7% Similarity=0.154 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHhcCCCee----eeccchhHHHHHHhh---ccCCCCHHHHHHHhhhhhceEecCCc
Q 039627 120 EKSLEIAMNHIHYEDEASRYM----TIGCVEKPLNMLSCW---VEDPNSDYFKKHLSRISEYLWVGEDG 181 (185)
Q Consensus 120 ~~A~~~a~~~i~~~~e~t~~~----~i~p~~~~~~ml~~l---g~~~d~p~~~~~~~~l~~~l~~~~dg 181 (185)
+.|+++|.+|++..|+.+|.+ |....-.|..++.+| |.+.+++.++++++-|.+- ..+||
T Consensus 476 ~~ai~rav~~L~~~Q~~dGsW~g~Wg~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~--Q~~DG 542 (634)
T TIGR03463 476 TRAISRGVRFLRSRQREDGSFPGSWGVCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSY--QRADG 542 (634)
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCCCCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHc--cCCCC
Confidence 578999999999999888753 323332344444444 7777889999999987764 24454
No 18
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=87.65 E-value=1.1 Score=42.35 Aligned_cols=51 Identities=8% Similarity=-0.020 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCCeeee-----ccchhHHHHHHhh---ccCCCCHHHHHHHhhhhhc
Q 039627 124 EIAMNHIHYEDEASRYMTI-----GCVEKPLNMLSCW---VEDPNSDYFKKHLSRISEY 174 (185)
Q Consensus 124 ~~a~~~i~~~~e~t~~~~i-----~p~~~~~~ml~~l---g~~~d~p~~~~~~~~l~~~ 174 (185)
++..+|+..+|..+|.+++ +=|+.|+...++| |.++|+|.++||++-|.+.
T Consensus 49 ~~~~~~l~~~Q~~DGgW~~~~~~~~~~~~Tv~aY~aLrl~G~~~~~~~m~~Ar~~i~~~ 107 (621)
T TIGR01787 49 EKIVRYLRHHQNEDGGWGLHIGGKSTVFGTVLAYVALKILGMSPDDPAMVRARNFILKQ 107 (621)
T ss_pred HHHHHHHHHhcCCCCCeeCCcCCCcchHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHc
Confidence 3467999999988888874 3566677766666 8999999999999877654
No 19
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=81.90 E-value=0.43 Score=33.90 Aligned_cols=56 Identities=11% Similarity=0.038 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhcCCCeeeeccc----hhHHHH---HHhhccCCCCHHHHHHHhhhhhceEecCCc
Q 039627 123 LEIAMNHIHYEDEASRYMTIGCV----EKPLNM---LSCWVEDPNSDYFKKHLSRISEYLWVGEDG 181 (185)
Q Consensus 123 ~~~a~~~i~~~~e~t~~~~i~p~----~~~~~m---l~~lg~~~d~p~~~~~~~~l~~~l~~~~dg 181 (185)
++++.+||+.+|..+|.++ ... ..+... +..++....++.++++++=|.+-. .+||
T Consensus 1 i~~~~~~l~~~Q~~dG~W~-~~~~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q--~~dG 63 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWG-YNWGSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQ--NPDG 63 (109)
T ss_dssp -----------------------------------------TS-SSBSSHHHHHHHHH-----TTS
T ss_pred Ccccccccccccccccccc-ccccccccccccccccccccCCCCcHHHHHHHHHHHHHhc--CCCC
Confidence 5788999999999999776 222 222222 233354578888999999777643 4555
No 20
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=71.86 E-value=12 Score=31.93 Aligned_cols=25 Identities=8% Similarity=0.074 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeee
Q 039627 117 QLREKSLEIAMNHIHYEDEASRYMT 141 (185)
Q Consensus 117 ~lR~~A~~~a~~~i~~~~e~t~~~~ 141 (185)
..-..+++++.+|++..|+.+|.+.
T Consensus 113 ~~~~~~i~~a~~~L~~~Q~~dG~f~ 137 (348)
T cd02889 113 KVSRERLYDAVDWLLSMQNSNGGFA 137 (348)
T ss_pred hhhHHHHHHHHHHHHHhccCCCCEe
Confidence 3567899999999999998887664
No 21
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=62.74 E-value=4.6 Score=34.49 Aligned_cols=50 Identities=12% Similarity=-0.049 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCCeeee--ccchhHHHHHHhh---cc-CCCCHHHHHHHhhhh
Q 039627 123 LEIAMNHIHYEDEASRYMTI--GCVEKPLNMLSCW---VE-DPNSDYFKKHLSRIS 172 (185)
Q Consensus 123 ~~~a~~~i~~~~e~t~~~~i--~p~~~~~~ml~~l---g~-~~d~p~~~~~~~~l~ 172 (185)
++++.+|+..+|..+|.++. +.+.-|-.++.++ |. ++..+.++|+++=|.
T Consensus 1 ~~~~~~~L~~~Q~~dG~W~~~~~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~ 56 (348)
T cd02889 1 IRRALDFLLSLQAPDGHWPGEYSQVWDTALALQALLEAGLAPEFDPALKKALEWLL 56 (348)
T ss_pred CchHHHHHHHhccCCCCccccCCchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Confidence 36789999999999998875 4455455555555 43 256677788776433
No 22
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=59.72 E-value=6.1 Score=27.78 Aligned_cols=54 Identities=11% Similarity=0.084 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCCeeeecc------chhHHHHHHhh---ccCCCCHHHHHHHhhhhhceEecCCc
Q 039627 126 AMNHIHYEDEASRYMTIGC------VEKPLNMLSCW---VEDPNSDYFKKHLSRISEYLWVGEDG 181 (185)
Q Consensus 126 a~~~i~~~~e~t~~~~i~p------~~~~~~ml~~l---g~~~d~p~~~~~~~~l~~~l~~~~dg 181 (185)
+.+|+...+..+|.++..+ +..+..++.++ +.+.+.+.++++++-|.+.- .+||
T Consensus 47 ~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~~l~~l~~~~~~~~~~~~~~a~~~l~~~Q--~~dG 109 (113)
T PF13249_consen 47 AVEWLLSQQNPDGGWGSNPDGGPPDVYTTYVALAALELLGRPDDEEAVRKAVDWLLSCQ--NPDG 109 (113)
T ss_dssp HHHHHHHHB-TTSGBBSSTTTT-BSHHHHHHHHHHHHHHT-GGCHTTHCCHHHHHHHTB---TTS
T ss_pred HHHHHHHhCCCCCCccCCCCCCCccHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhc--CCCC
Confidence 5999999998777665333 33455666665 33344578888888777754 3454
No 23
>PF08102 Antimicrobial_7: Scorpion antimicrobial peptide ; InterPro: IPR012526 This family consists of antimicrobial peptides secreted by scorpions. Novel antimicrobial peptides have been isolated from scorpions, namely the opistoporin [] and the pandinin []. These peptides form essentially helical structures and demonstrate high antimicrobial activity against Gram-negative and Gram-positive bacteria respectively.; GO: 0005576 extracellular region
Probab=56.49 E-value=32 Score=20.96 Aligned_cols=31 Identities=29% Similarity=0.346 Sum_probs=22.4
Q ss_pred hhhccCCCChHHHHHHHHHHHHHHHHHhcCC
Q 039627 107 EPVLNRWPLNQLREKSLEIAMNHIHYEDEAS 137 (185)
Q Consensus 107 ~~~~~~~~~~~lR~~A~~~a~~~i~~~~e~t 137 (185)
.+..++-....|+++|+..|-+|.-+.++.|
T Consensus 12 kk~wnS~~~~~Lk~kalnAaknfVaeKiGat 42 (43)
T PF08102_consen 12 KKAWNSDPVQQLKNKALNAAKNFVAEKIGAT 42 (43)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444333467799999999999998876544
No 24
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=47.34 E-value=27 Score=20.80 Aligned_cols=19 Identities=5% Similarity=-0.017 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhcCCCeee
Q 039627 123 LEIAMNHIHYEDEASRYMT 141 (185)
Q Consensus 123 ~~~a~~~i~~~~e~t~~~~ 141 (185)
++++.+||+.+|..+|.++
T Consensus 3 ~~~~~~~l~~~Q~~dGGf~ 21 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPDGGFG 21 (44)
T ss_dssp HHHHHHHHHHTBBTTSSBB
T ss_pred HHHHHHHHHHHCCCCCCCC
Confidence 5788999999998888665
No 25
>PLN02592 ent-copalyl diphosphate synthase
Probab=40.70 E-value=33 Score=33.77 Aligned_cols=53 Identities=9% Similarity=0.043 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhcCCCeeeeccc-------hhHHHHHHhhc-cCCCCHHHHHHHhhhhhce
Q 039627 123 LEIAMNHIHYEDEASRYMTIGCV-------EKPLNMLSCWV-EDPNSDYFKKHLSRISEYL 175 (185)
Q Consensus 123 ~~~a~~~i~~~~e~t~~~~i~p~-------~~~~~ml~~lg-~~~d~p~~~~~~~~l~~~l 175 (185)
.-.|.+||++.|..||.+|.++. .+|+-++.||- .......+.++++.|++-+
T Consensus 117 FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~~i~rGl~fi~~nl 177 (800)
T PLN02592 117 FPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLHPEKCEKGMSFFRENI 177 (800)
T ss_pred CHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 44789999999999999985432 34454444542 2233455788888888655
No 26
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.36 E-value=63 Score=31.80 Aligned_cols=67 Identities=27% Similarity=0.352 Sum_probs=45.3
Q ss_pred HHHHHHhhhhhccCCCChHHHHHHHHHHHHHHHHHhcCCCeeeeccchhHHHHHHhhccCCCCHHHHHHHhhhhh
Q 039627 99 WDTLYNVVEPVLNRWPLNQLREKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCWVEDPNSDYFKKHLSRISE 173 (185)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~lR~~A~~~a~~~i~~~~e~t~~~~i~p~~~~~~ml~~lg~~~d~p~~~~~~~~l~~ 173 (185)
+.+|+..+..++.-.+-..||..|++-.-+|+..++.|..|.+ +|||-... .-|+-+++||...|-+
T Consensus 291 nAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYva-------Ln~L~r~V-~~d~~avqrHr~tIle 357 (866)
T KOG1062|consen 291 NAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVA-------LNMLLRVV-QQDPTAVQRHRSTILE 357 (866)
T ss_pred hHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeee-------hhhHHhhh-cCCcHHHHHHHHHHHH
Confidence 3455554544432123456999999999999999999999995 66655432 2366667777765544
No 27
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=37.15 E-value=1.1e+02 Score=25.09 Aligned_cols=57 Identities=4% Similarity=-0.038 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeeeeccch------hHHHHHHhhc-----cCCCCHHHHHHHhhhhhc
Q 039627 118 LREKSLEIAMNHIHYEDEASRYMTIGCVE------KPLNMLSCWV-----EDPNSDYFKKHLSRISEY 174 (185)
Q Consensus 118 lR~~A~~~a~~~i~~~~e~t~~~~i~p~~------~~~~ml~~lg-----~~~d~p~~~~~~~~l~~~ 174 (185)
-.+..++.+++++...+..+|.++..+-. -|.+++.++. .+.+++.+.++++-+...
T Consensus 46 ~~~~~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~ 113 (282)
T cd02891 46 KALEYIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQ 113 (282)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 46677888999999999888766533222 1233444442 145778899999877665
No 28
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=34.45 E-value=76 Score=26.87 Aligned_cols=24 Identities=4% Similarity=0.075 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeee
Q 039627 118 LREKSLEIAMNHIHYEDEASRYMT 141 (185)
Q Consensus 118 lR~~A~~~a~~~i~~~~e~t~~~~ 141 (185)
+-+.+++++.+|++.+|..+|.+.
T Consensus 100 v~~~~l~~a~~wL~~~Q~~dG~f~ 123 (297)
T cd02896 100 VDQNVICGSVNWLISNQKPDGSFQ 123 (297)
T ss_pred CCHHHHHHHHHHHHhcCCCCCeeC
Confidence 446789999999999998777665
No 29
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=31.85 E-value=1.5e+02 Score=23.42 Aligned_cols=57 Identities=14% Similarity=0.032 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeee-ecc-----------chhHHHHHHhh---ccCCCCHHHHHHHhhhhhc
Q 039627 118 LREKSLEIAMNHIHYEDEASRYMT-IGC-----------VEKPLNMLSCW---VEDPNSDYFKKHLSRISEY 174 (185)
Q Consensus 118 lR~~A~~~a~~~i~~~~e~t~~~~-i~p-----------~~~~~~ml~~l---g~~~d~p~~~~~~~~l~~~ 174 (185)
.-..+++++.+|+...+..+|.+. ..+ +..+..++.++ |...+++.+.++++-|.+-
T Consensus 101 ~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~~~~~~~~~~~l~~~ 172 (300)
T cd00688 101 VDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPDPLIEKALDYLLSC 172 (300)
T ss_pred cCHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHH
Confidence 445678999999999997766443 222 22344455555 3333467777777765544
No 30
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=31.68 E-value=82 Score=25.04 Aligned_cols=54 Identities=7% Similarity=-0.090 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhcCCCeeeecc--------chhH---HHHHHhhccCCCCHHHHHHHhhhhh
Q 039627 120 EKSLEIAMNHIHYEDEASRYMTIGC--------VEKP---LNMLSCWVEDPNSDYFKKHLSRISE 173 (185)
Q Consensus 120 ~~A~~~a~~~i~~~~e~t~~~~i~p--------~~~~---~~ml~~lg~~~d~p~~~~~~~~l~~ 173 (185)
+.+++++.+|+..++..+|.++..+ ...+ +..+.+++...+.+..+++++-|.+
T Consensus 205 ~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~L~~ 269 (300)
T cd00688 205 SPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLS 269 (300)
T ss_pred hHHHHHHHHHHHHhcCCCCCcCccccCCCCcCchHHHHHHHHHHHHHhhhcCcccHHHHHHHHHh
Confidence 4678889999999998877554221 1122 3333333433466677777776554
No 31
>PLN02279 ent-kaur-16-ene synthase
Probab=27.03 E-value=35 Score=33.51 Aligned_cols=53 Identities=8% Similarity=-0.048 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhcCCCeeeecc---------chhHHHHHHhh---ccCCCCHHHHHHHhhhhhceEe
Q 039627 123 LEIAMNHIHYEDEASRYMTIGC---------VEKPLNMLSCW---VEDPNSDYFKKHLSRISEYLWV 177 (185)
Q Consensus 123 ~~~a~~~i~~~~e~t~~~~i~p---------~~~~~~ml~~l---g~~~d~p~~~~~~~~l~~~l~~ 177 (185)
.-.|.+||++.|-.+|.+|... +.+|+-.+.|| ..++++ +.++++.|++-.+.
T Consensus 75 Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~~~~--~~~gl~fi~~n~~~ 139 (784)
T PLN02279 75 FPECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVGEEQ--INKGLQFIELNSAS 139 (784)
T ss_pred ChHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcCccc--chhhHHHHHHHHHh
Confidence 3578999999999999998442 13444444444 333333 57777777754443
No 32
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.38 E-value=48 Score=32.48 Aligned_cols=135 Identities=22% Similarity=0.348 Sum_probs=78.4
Q ss_pred CCCCCCcchhhhhhhhhhhhhhcCccccc----CCch----------hhhHHhhhccCCCCCC--------Cccc-----
Q 039627 25 PISPGKLLCYCRLTYMPMSYLYGKRFVGP----ITPL----------ILQLREEIYTQPYRDI--------HWSK----- 77 (185)
Q Consensus 25 P~~~~~~~~~~R~v~vPl~il~~~r~~~~----~~~~----------~~~lr~EL~~~~~~~i--------~w~~----- 77 (185)
|++..++-+-|.+|-.-|-||++++|+.. .+-+ ..+|=++.|..+|-+. .|=.
T Consensus 599 ~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNCLVge~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIl 678 (774)
T KOG1026|consen 599 PLSTSQFLHIATQIAAGMEYLSSHHFVHRDLATRNCLVGENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESIL 678 (774)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCcccccchhhhhceeccceEEEecccccchhhhhhhhhcccCCceeeeecCCHHHhh
Confidence 57788888999999999999999999852 1111 2445567777766322 1321
Q ss_pred cccCCCCCCCcCCchhhHH-HHHHHHHHhhhhhccCCCChHHHHHHHHHHHHHHHHHhcCCC-eeeeccchhHHHHHHhh
Q 039627 78 MRHFCAKEDIFFPHTSVQN-LLWDTLYNVVEPVLNRWPLNQLREKSLEIAMNHIHYEDEASR-YMTIGCVEKPLNMLSCW 155 (185)
Q Consensus 78 ~r~~~~~~d~y~p~~~~~~-~~~~~l~~~~~~~~~~~~~~~lR~~A~~~a~~~i~~~~e~t~-~~~i~p~~~~~~ml~~l 155 (185)
.+...-++|.+ .+- .+|.++ .+- ..+-=..+-+.+.+.|.++..-.- --| |.-.+ -.|+-||
T Consensus 679 y~kFTteSDVW-----s~GVvLWEIF-syG--------~QPy~glSn~EVIe~i~~g~lL~~Pe~C-P~~vY-~LM~~CW 742 (774)
T KOG1026|consen 679 YGKFTTESDVW-----SFGVVLWEIF-SYG--------KQPYYGLSNQEVIECIRAGQLLSCPENC-PTEVY-SLMLECW 742 (774)
T ss_pred cCcccchhhhh-----hhhhhhhhhh-ccc--------cCcccccchHHHHHHHHcCCcccCCCCC-CHHHH-HHHHHHh
Confidence 11122222211 111 223333 211 111223568889999988763221 111 33333 4688899
Q ss_pred ccC-CCCHHHHHHHhhhhhce
Q 039627 156 VED-PNSDYFKKHLSRISEYL 175 (185)
Q Consensus 156 g~~-~d~p~~~~~~~~l~~~l 175 (185)
.+. .+-|.|+.--.+|++..
T Consensus 743 ~~~P~~RPsF~eI~~~L~~~~ 763 (774)
T KOG1026|consen 743 NENPKRRPSFKEIHSRLQAWA 763 (774)
T ss_pred hcCcccCCCHHHHHHHHHHHH
Confidence 865 58888988888888764
No 33
>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=22.87 E-value=1.4e+02 Score=20.43 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=32.0
Q ss_pred HHHHhcCCCeeeeccchhHHHHHHhhccCCCCHHHHHHHhhhhhceEecCCceee
Q 039627 130 IHYEDEASRYMTIGCVEKPLNMLSCWVEDPNSDYFKKHLSRISEYLWVGEDGMKV 184 (185)
Q Consensus 130 i~~~~e~t~~~~i~p~~~~~~ml~~lg~~~d~p~~~~~~~~l~~~l~~~~dg~~~ 184 (185)
+..+.+.+|+.-|.-+. +++-+..+. .|-..+..|++.-. .+-+++||.++
T Consensus 23 L~~~m~~dG~Vpl~~i~-~F~rmk~lt--~d~~~i~~Al~~S~-~lev~ed~~~V 73 (75)
T cd08031 23 LLSQMDSDQYVPIWTIA-NFNKIKKLT--TDIDLIVEALRESP-NVQVDEKGEKV 73 (75)
T ss_pred HHHHhCCCCCEEHHHHh-CchhHHHHc--CCHHHHHHHHHhCC-eEEEcCCCCcc
Confidence 33344567887544443 366666665 36678888888765 55578888653
No 34
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=21.65 E-value=3.5e+02 Score=22.13 Aligned_cols=58 Identities=12% Similarity=0.049 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeeeccchhHHHHHHhhccCCCCHHHHHHHhhhhhceEecC
Q 039627 117 QLREKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCWVEDPNSDYFKKHLSRISEYLWVGE 179 (185)
Q Consensus 117 ~lR~~A~~~a~~~i~~~~e~t~~~~i~p~~~~~~ml~~lg~~~d~p~~~~~~~~l~~~l~~~~ 179 (185)
+.-+.++++|.+++..+..+.. .+-.-++..++.--.+ +++.-.++++.|....-.++
T Consensus 109 ~~~~~~i~kA~~~L~~~~~~~~----~~Y~lAl~aYAL~la~-~~~~~~~~~~~L~~~a~~~~ 166 (246)
T PF07678_consen 109 PEYENAINKALNYLERHLDNIQ----DPYTLALVAYALALAG-DSPQASKLLNKLNSMATTEG 166 (246)
T ss_dssp HCHHHHHHHHHHHHHHHHGCTS----SHHHHHHHHHHHHHTT-TCHHHHHHHHHHHCHCEETT
T ss_pred hhhHHHHHHHHHHHHHhccccC----CHHHHHHHHHHHHhhc-ccchHHHHHHHHHHhhhhcc
Confidence 3557899999999988854432 1111222222211233 88999999999988765443
No 35
>KOG2126 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=21.39 E-value=1.7e+02 Score=29.25 Aligned_cols=55 Identities=11% Similarity=0.184 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhcCCCeeeeccchhHHHHHHhh-----c--cCCCCHHHHHHHhhhhh--------------ceEecC
Q 039627 121 KSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCW-----V--EDPNSDYFKKHLSRISE--------------YLWVGE 179 (185)
Q Consensus 121 ~A~~~a~~~i~~~~e~t~~~~i~p~~~~~~ml~~l-----g--~~~d~p~~~~~~~~l~~--------------~l~~~~ 179 (185)
.--+++.|++..+.+++++- +..-+.+ | ++||||.+++-+...++ ++++++
T Consensus 189 tVDn~v~~~if~~l~s~dwd--------VlIAHfLGVDH~GHk~GPdH~~M~~KL~qmD~vI~~ii~~mdedTlLvVmGD 260 (895)
T KOG2126|consen 189 TVDNGVIEKIFKSLNSKDWD--------VLIAHFLGVDHCGHKHGPDHPEMADKLVQMDRVINEIIKKMDEDTLLVVMGD 260 (895)
T ss_pred ccchHHHHHhhhhhccCchH--------HHHHHHhCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHhccCeeEEEecC
Confidence 34567788888888776643 2222333 4 46999997765544332 556677
Q ss_pred Ccee
Q 039627 180 DGMK 183 (185)
Q Consensus 180 dg~~ 183 (185)
.||.
T Consensus 261 HGMt 264 (895)
T KOG2126|consen 261 HGMT 264 (895)
T ss_pred CCCC
Confidence 7875
No 36
>cd08035 LARP_4 La RNA-binding domain of La-related protein 4. This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=20.24 E-value=1.8e+02 Score=19.96 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=32.9
Q ss_pred HHHhcCCCeeeeccchhHHHHHHhhccCCCCHHHHHHHhhhhhceEecCCceee
Q 039627 131 HYEDEASRYMTIGCVEKPLNMLSCWVEDPNSDYFKKHLSRISEYLWVGEDGMKV 184 (185)
Q Consensus 131 ~~~~e~t~~~~i~p~~~~~~ml~~lg~~~d~p~~~~~~~~l~~~l~~~~dg~~~ 184 (185)
..+..++||.-|.-+. +++-+-.+. .|-..+..|++.-. .+-+++||.++
T Consensus 24 ~~~md~~G~Vpi~~ia-sF~rik~lt--~d~~~I~~AL~~S~-~levsedg~kV 73 (75)
T cd08035 24 ISQMDSDQFVPIWTVA-NMEGIKKLT--TDMDLILDVLRSSP-MVQVDETGEKV 73 (75)
T ss_pred HHhhCcCCCEehHHHh-ccHHHHHhc--CCHHHHHHHHHcCC-eEEEcCCCCcc
Confidence 3344567888654443 477777765 36777888888765 45678888653
Done!