Query 039627
Match_columns 185
No_of_seqs 121 out of 604
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 20:01:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w6k_A Lanosterol synthase; cy 100.0 4.1E-50 1.4E-54 376.2 11.9 180 1-185 199-379 (732)
2 2sqc_A Squalene-hopene cyclase 100.0 4.3E-40 1.5E-44 304.0 12.0 167 1-185 136-305 (631)
3 2sqc_A Squalene-hopene cyclase 90.2 0.32 1.1E-05 44.5 5.1 52 122-173 60-119 (631)
4 1w6k_A Lanosterol synthase; cy 86.9 0.74 2.5E-05 43.0 5.3 52 123-174 124-183 (732)
5 1qqf_A Protein (complement C3D 53.7 14 0.00048 29.5 4.3 56 118-173 86-169 (277)
6 1gxm_A Pectate lyase; mechanis 52.8 4.8 0.00016 34.2 1.3 19 120-138 168-186 (332)
7 2h6f_B Protein farnesyltransfe 51.2 7.6 0.00026 33.9 2.4 60 120-181 120-189 (437)
8 3s9v_A Abietadiene synthase, c 50.6 11 0.00037 35.6 3.5 54 123-176 76-137 (785)
9 2wy7_A Complement C3D fragment 50.2 17 0.00058 29.6 4.3 56 118-173 102-185 (310)
10 4acq_A Alpha-2-macroglobulin; 48.6 17 0.00059 36.4 4.8 55 119-173 1036-1107(1451)
11 3p5p_A Taxadiene synthase; cla 42.6 17 0.00057 34.1 3.4 53 123-175 55-115 (764)
12 3sdr_A Alpha-bisabolene syntha 39.2 20 0.00069 33.9 3.4 54 123-176 103-164 (817)
13 1gxm_A Pectate lyase; mechanis 39.0 18 0.0006 30.7 2.7 23 118-140 94-116 (332)
14 3pya_A ENT-copalyl diphosphate 36.2 21 0.00073 33.3 3.0 55 123-177 52-114 (727)
15 1hzf_A Complement factor C4A; 30.9 83 0.0028 26.2 5.7 61 119-181 89-159 (367)
16 1r76_A Pectate lyase; A-helica 28.9 41 0.0014 29.2 3.4 57 118-174 172-257 (408)
17 1hzf_A Complement factor C4A; 28.1 1.2E+02 0.004 25.2 6.1 60 120-183 213-273 (367)
18 2bb6_A TCII, TC II, transcobal 22.3 91 0.0031 27.0 4.4 55 117-173 202-261 (414)
19 1r76_A Pectate lyase; A-helica 21.5 58 0.002 28.2 3.0 21 120-140 244-265 (408)
20 3dss_B Geranylgeranyl transfer 20.6 57 0.0019 27.1 2.7 50 123-173 116-173 (331)
No 1
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=100.00 E-value=4.1e-50 Score=376.24 Aligned_cols=180 Identities=37% Similarity=0.803 Sum_probs=171.7
Q ss_pred CceeeeCCCCCCCCcchhccCCCCCCCCCCcchhhhhhhhhhhhhhcCcccccCCchhhhHHhhhccCCCCCCCcccccc
Q 039627 1 ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYRDIHWSKMRH 80 (185)
Q Consensus 1 llG~y~W~~v~~iPpEl~LLP~w~P~~~~~~~~~~R~v~vPl~il~~~r~~~~~~~~~~~lr~EL~~~~~~~i~w~~~r~ 80 (185)
+||+|+|+++|+|||||||||+||||||++||||||+||+||+||+++||+++.+|.+.+||+|||++||++|+|.++|+
T Consensus 199 ~~g~~~W~~~~~~PpE~~llP~~~p~~~~~~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~ 278 (732)
T 1w6k_A 199 VLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRN 278 (732)
T ss_dssp HTTSSCGGGSCCCCGGGGGSCTTSTTCGGGSCHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHTTSCSSCGGGCCSGGGTT
T ss_pred HcCCCCcccCCCCCHHHHHccCcCCCCHHHHHHHHHHHHHhHHHHhhcCCCCCCCcchhhHHHHhcCCCccccchhhhcc
Confidence 58999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred CCCCCCCcCCchhhHHHHHHHHHHhhhhhccCCCChHHHHHHHHHHHHHHHHHhcCCCeeeeccchhHHHHHHhhc-cCC
Q 039627 81 FCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLREKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCWV-EDP 159 (185)
Q Consensus 81 ~~~~~d~y~p~~~~~~~~~~~l~~~~~~~~~~~~~~~lR~~A~~~a~~~i~~~~e~t~~~~i~p~~~~~~ml~~lg-~~~ 159 (185)
.++++|+|+|++++++.++..| +.+|+++ ++++|++|+++|++||.+|||+|||.||+|+++++||++|+. .++
T Consensus 279 ~~~~~d~~~p~~~~~~~~~~~l-~~~e~~~----~~~lr~~a~~~~~~~i~~~~~~~~~~~i~pv~~~l~~l~~~~~~G~ 353 (732)
T 1w6k_A 279 NVAPDELYTPHSWLLRVVYALL-NLYEHHH----SAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGP 353 (732)
T ss_dssp CCCGGGCSSCCCHHHHHHHHHH-HHHHHTC----CHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHCT
T ss_pred ccccccccCCHHHHHHHHHHHH-HHhhhcC----cHHHHHHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHhcCC
Confidence 9999999999999999888888 6788765 678999999999999999999999999999999999999995 459
Q ss_pred CCHHHHHHHhhhhhceEecCCceeeC
Q 039627 160 NSDYFKKHLSRISEYLWVGEDGMKVQ 185 (185)
Q Consensus 160 d~p~~~~~~~~l~~~l~~~~dg~~~Q 185 (185)
|||.+++|++++++|+|+.+|||++|
T Consensus 354 ~~~~~~~~l~~l~~~l~~~~dG~~~q 379 (732)
T 1w6k_A 354 ASTAFQEHVSRIPDYLWMGLDGMKMQ 379 (732)
T ss_dssp TSHHHHHHHHTSGGGEEEETTEEEEC
T ss_pred CCHHHHHHHHHHHHhheeCCCCceeC
Confidence 99999999999999999999999987
No 2
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=100.00 E-value=4.3e-40 Score=304.01 Aligned_cols=167 Identities=16% Similarity=0.137 Sum_probs=141.3
Q ss_pred CceeeeCCCCCCCCcchhccCCCCCCCCCCcchhhhhhhhhhhhhhcCcccccCCchhhhHHhhhccCCCCCCCcccccc
Q 039627 1 ILGVYDWSGCNPMPPEFWKFPSFLPISPGKLLCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYRDIHWSKMRH 80 (185)
Q Consensus 1 llG~y~W~~v~~iPpEl~LLP~w~P~~~~~~~~~~R~v~vPl~il~~~r~~~~~~~~~~~lr~EL~~~~~~~i~w~~~r~ 80 (185)
+||+|+|+++|+||||+||||+|+||||++||||+|+|++||+||+++||++++|+. .+| +|||+++|++|+|..
T Consensus 136 ~~G~~~w~~~~~~p~e~~llp~~~p~~~~~~~~~~R~~~~P~~~l~~~r~~~~~~~~-~~l-~el~~~~~~~~~~~~--- 210 (631)
T 2sqc_A 136 LVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPER-ARV-PELYETDVPPRRRGA--- 210 (631)
T ss_dssp HTTSSCGGGSCCCCGGGGGSCTTSTTCGGGSCHHHHHHHHHHHHHHHHCCCCCCCGG-GCC-GGGGCCSSCCCCCCC---
T ss_pred HcCCCCcccCCCCCHHHHHcccccccCHhHhHHHHHHHHHhHHHHhhCCCccCCCCC-CCH-HHhcCCCccccCccc---
Confidence 589999999999999999999999999999999999999999999999999997776 588 999999999999863
Q ss_pred CCCCCCCcCCchhhHHHHHHHHHHhhhhhccCCCChHHHHHHHHHHHHHHHHHhcCCCeee-ecc-chhHHHHHHhhccC
Q 039627 81 FCAKEDIFFPHTSVQNLLWDTLYNVVEPVLNRWPLNQLREKSLEIAMNHIHYEDEASRYMT-IGC-VEKPLNMLSCWVED 158 (185)
Q Consensus 81 ~~~~~d~y~p~~~~~~~~~~~l~~~~~~~~~~~~~~~lR~~A~~~a~~~i~~~~e~t~~~~-i~p-~~~~~~ml~~lg~~ 158 (185)
+.|.+.++..+...+ +.+++. ++++||++|+++|++||++|+|+||++| |.| +.+++.++.++|++
T Consensus 211 -------~~~~~~~~~~~~~~l-~~~~~~----~~~~lr~~a~~~~~~~i~~~~~~~g~~~~i~p~~~~~~~~l~~~g~~ 278 (631)
T 2sqc_A 211 -------KGGGGWIFDALDRAL-HGYQKL----SVHPFRRAAEIRALDWLLERQAGDGSWGGIQPPWFYALIALKILDMT 278 (631)
T ss_dssp -------TTCCCHHHHHHHHHH-HHHHHS----SCCTTHHHHHHHHHHHHHHHCCTTSSSTTSHHHHHHHHHHHHHTTCT
T ss_pred -------cccHHHHHHHHHHHH-HHhhcC----CcHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHcCCC
Confidence 445666666555555 445543 4667999999999999999999999876 533 33444444555887
Q ss_pred CCCHHHHHHHhhhhhceEecCC-ceeeC
Q 039627 159 PNSDYFKKHLSRISEYLWVGED-GMKVQ 185 (185)
Q Consensus 159 ~d~p~~~~~~~~l~~~l~~~~d-g~~~Q 185 (185)
|||.+++|++++++|+|+++| ||++|
T Consensus 279 -~~~~~~~~~~~~~~~~~~~~dGg~~~~ 305 (631)
T 2sqc_A 279 -QHPAFIKGWEGLELYGVELDYGGWMFQ 305 (631)
T ss_dssp -TSHHHHHHHHGGGGGEEECTTSCEEEC
T ss_pred -CCHHHHHHHHHHHhceEEcCCCceeeC
Confidence 999999999999999999998 89887
No 3
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=90.18 E-value=0.32 Score=44.51 Aligned_cols=52 Identities=12% Similarity=0.131 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhcCCCeeee---cc--chhHHHHHHhh---ccCCCCHHHHHHHhhhhh
Q 039627 122 SLEIAMNHIHYEDEASRYMTI---GC--VEKPLNMLSCW---VEDPNSDYFKKHLSRISE 173 (185)
Q Consensus 122 A~~~a~~~i~~~~e~t~~~~i---~p--~~~~~~ml~~l---g~~~d~p~~~~~~~~l~~ 173 (185)
-.++..++|..+|..||.+++ ++ |+.|+.++++| |.++|+|.++||++.|.+
T Consensus 60 ~~~~~~~yl~~~Q~~dGgW~~~~~~~~~~~~t~~~y~aLrllg~~~~~~~~~~ar~~i~~ 119 (631)
T 2sqc_A 60 RMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQS 119 (631)
T ss_dssp HHHHHHHHHHHHSCTTSCCCSSTTCCCCHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCccCCCCCCcchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 356677999999988887774 34 66777777766 899999999999998876
No 4
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=86.93 E-value=0.74 Score=42.99 Aligned_cols=52 Identities=6% Similarity=-0.099 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhcCCCeeee-----ccchhHHHHHHhh---ccCCCCHHHHHHHhhhhhc
Q 039627 123 LEIAMNHIHYEDEASRYMTI-----GCVEKPLNMLSCW---VEDPNSDYFKKHLSRISEY 174 (185)
Q Consensus 123 ~~~a~~~i~~~~e~t~~~~i-----~p~~~~~~ml~~l---g~~~d~p~~~~~~~~l~~~ 174 (185)
.++..+||..+|..+|.+|+ +=|+.|+..++|| |.++|+|.++||++-|.+.
T Consensus 124 ~~~~~~yl~~~Q~~DGgWgl~~~~~s~~~~T~~~Y~aLrl~G~~~~~~~~~~ar~~i~~~ 183 (732)
T 1w6k_A 124 REEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDDPDLVRARNILHKK 183 (732)
T ss_dssp HHHHHHHHHHHSCTTSCBCSBTTSCCBHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCccCCcCCCccHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHc
Confidence 45667899999988887773 3455556566666 8899999999999977653
No 5
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=53.71 E-value=14 Score=29.45 Aligned_cols=56 Identities=11% Similarity=0.054 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHH-HhcCCCeee-eccc-----------------hhHHHHHHhh---cc------CCCCHHHHHHHh
Q 039627 118 LREKSLEIAMNHIHY-EDEASRYMT-IGCV-----------------EKPLNMLSCW---VE------DPNSDYFKKHLS 169 (185)
Q Consensus 118 lR~~A~~~a~~~i~~-~~e~t~~~~-i~p~-----------------~~~~~ml~~l---g~------~~d~p~~~~~~~ 169 (185)
+-+.+++++.+|+.. +|+.+|.+. .+++ .-+...+.++ |. +..++.++++++
T Consensus 86 v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~ 165 (277)
T 1qqf_A 86 IDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGE 165 (277)
T ss_dssp CCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCCCCccCCccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHH
Confidence 445789999999995 998887543 2332 1133444444 22 345788888887
Q ss_pred hhhh
Q 039627 170 RISE 173 (185)
Q Consensus 170 ~l~~ 173 (185)
-+.+
T Consensus 166 ~L~~ 169 (277)
T 1qqf_A 166 YLEA 169 (277)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 6
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=52.81 E-value=4.8 Score=34.16 Aligned_cols=19 Identities=5% Similarity=-0.022 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 039627 120 EKSLEIAMNHIHYEDEASR 138 (185)
Q Consensus 120 ~~A~~~a~~~i~~~~e~t~ 138 (185)
+.|++++.++|+.+||.+|
T Consensus 168 ~~av~Rgid~Llk~Qe~dg 186 (332)
T 1gxm_A 168 KTAVTKGTDYILKAQWKQN 186 (332)
T ss_dssp HHHHHHHHHHHHHHSCEET
T ss_pred HHHHHHHHHHHHHhhCccC
Confidence 4699999999999998865
No 7
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=51.17 E-value=7.6 Score=33.95 Aligned_cols=60 Identities=10% Similarity=-0.016 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhcCCCeee-----eccch---hHHHHHHhhccC--CCCHHHHHHHhhhhhceEecCCc
Q 039627 120 EKSLEIAMNHIHYEDEASRYMT-----IGCVE---KPLNMLSCWVED--PNSDYFKKHLSRISEYLWVGEDG 181 (185)
Q Consensus 120 ~~A~~~a~~~i~~~~e~t~~~~-----i~p~~---~~~~ml~~lg~~--~d~p~~~~~~~~l~~~l~~~~dg 181 (185)
...++++.+||+..|+.+|.++ .+.+. .++.+|..+|.. .+.+.++++++=|.+.- .+||
T Consensus 120 ~~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q--~~DG 189 (437)
T 2h6f_B 120 QIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLK--QPDG 189 (437)
T ss_dssp HHHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTB--CTTS
T ss_pred HHHHHHHHHHHHHhCCCCCCcCCccCCCcchhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhC--CCCC
Confidence 3466889999999998876554 11223 334555555643 35566888887666542 4455
No 8
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=50.56 E-value=11 Score=35.56 Aligned_cols=54 Identities=7% Similarity=-0.042 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCCCeeeecc-------chhHHHHHHhhc-cCCCCHHHHHHHhhhhhceE
Q 039627 123 LEIAMNHIHYEDEASRYMTIGC-------VEKPLNMLSCWV-EDPNSDYFKKHLSRISEYLW 176 (185)
Q Consensus 123 ~~~a~~~i~~~~e~t~~~~i~p-------~~~~~~ml~~lg-~~~d~p~~~~~~~~l~~~l~ 176 (185)
.-.|.+||++.|..+|.+|.+. +.+|+-++.||- ....+..+.++++-|++-++
T Consensus 76 Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~~~~~i~~Gl~fl~~nl~ 137 (785)
T 3s9v_A 76 FPETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRTGETQVQKGIEFFRTQAG 137 (785)
T ss_dssp SHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHH
Confidence 3578999999999999998431 345555555552 23344789999988876543
No 9
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=50.16 E-value=17 Score=29.57 Aligned_cols=56 Identities=9% Similarity=0.005 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHH-HhcCCCeee-eccc-----------------hhHHHHHHhh---cc------CCCCHHHHHHHh
Q 039627 118 LREKSLEIAMNHIHY-EDEASRYMT-IGCV-----------------EKPLNMLSCW---VE------DPNSDYFKKHLS 169 (185)
Q Consensus 118 lR~~A~~~a~~~i~~-~~e~t~~~~-i~p~-----------------~~~~~ml~~l---g~------~~d~p~~~~~~~ 169 (185)
+-+.+++++.+|+.. +|+.+|.+. .+.+ .-+...+.++ |. +..++.++++++
T Consensus 102 v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~ 181 (310)
T 2wy7_A 102 IDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGD 181 (310)
T ss_dssp CCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHH
Confidence 345789999999995 998887543 2222 1133444444 22 345788888887
Q ss_pred hhhh
Q 039627 170 RISE 173 (185)
Q Consensus 170 ~l~~ 173 (185)
-+.+
T Consensus 182 ~L~~ 185 (310)
T 2wy7_A 182 FLEA 185 (310)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 10
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=48.58 E-value=17 Score=36.44 Aligned_cols=55 Identities=9% Similarity=0.058 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCeee-ecc-------------chhHHHHHHhh---ccCCCCHHHHHHHhhhhh
Q 039627 119 REKSLEIAMNHIHYEDEASRYMT-IGC-------------VEKPLNMLSCW---VEDPNSDYFKKHLSRISE 173 (185)
Q Consensus 119 R~~A~~~a~~~i~~~~e~t~~~~-i~p-------------~~~~~~ml~~l---g~~~d~p~~~~~~~~l~~ 173 (185)
-+.++++|.+|+..+|+.+|.+. .++ +.-+.+.+++| |....++.+++|++-+++
T Consensus 1036 ~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~ 1107 (1451)
T 4acq_A 1036 DEAHITQALIWLSQRQKDNGCFRSSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLES 1107 (1451)
T ss_dssp CTHHHHHHHHHHHHTEETTTEECCCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcccCCcccccCcccchhhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 35689999999999999888663 222 22245555665 555789999999987664
No 11
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=42.56 E-value=17 Score=34.15 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCCCeeeecc-------chhHHHHHHhhc-cCCCCHHHHHHHhhhhhce
Q 039627 123 LEIAMNHIHYEDEASRYMTIGC-------VEKPLNMLSCWV-EDPNSDYFKKHLSRISEYL 175 (185)
Q Consensus 123 ~~~a~~~i~~~~e~t~~~~i~p-------~~~~~~ml~~lg-~~~d~p~~~~~~~~l~~~l 175 (185)
.-.|.+||++.|..+|.+|.+. +.+|+-++.||- ....+..+.++++-|++-+
T Consensus 55 Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~~~~i~~Gl~fl~~nl 115 (764)
T 3p5p_A 55 FPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKTGHSQVQQGAEFIAENL 115 (764)
T ss_dssp CHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 3578999999999999998422 334555555542 2234478999999887654
No 12
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=39.25 E-value=20 Score=33.88 Aligned_cols=54 Identities=9% Similarity=-0.004 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhcCCCeeeecc-------chhHHHHHHhhc-cCCCCHHHHHHHhhhhhceE
Q 039627 123 LEIAMNHIHYEDEASRYMTIGC-------VEKPLNMLSCWV-EDPNSDYFKKHLSRISEYLW 176 (185)
Q Consensus 123 ~~~a~~~i~~~~e~t~~~~i~p-------~~~~~~ml~~lg-~~~d~p~~~~~~~~l~~~l~ 176 (185)
.-.|.+||++.|..+|.+|.+. +.+|+-++.||- ....+..+.++++-|++-++
T Consensus 103 Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~~~~i~~Gl~fl~~nl~ 164 (817)
T 3sdr_A 103 FPQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNVGDLQVEQGIEFIKSNLE 164 (817)
T ss_dssp SHHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 3578999999999999998422 334455555542 23344789999988886553
No 13
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=39.02 E-value=18 Score=30.65 Aligned_cols=23 Identities=9% Similarity=0.055 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCee
Q 039627 118 LREKSLEIAMNHIHYEDEASRYM 140 (185)
Q Consensus 118 lR~~A~~~a~~~i~~~~e~t~~~ 140 (185)
--+.|++++.+||+.=|-.+|.+
T Consensus 94 ~y~~Ai~Rgl~wlL~mQ~~nGGW 116 (332)
T 1gxm_A 94 KYRDAVRKAANFLVNSQYSTGAL 116 (332)
T ss_dssp HHHHHHHHHHHHHHHHCCTTSCC
T ss_pred HHHHHHHHHHHHHHhccCCCCCc
Confidence 56789999999999999666544
No 14
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=36.18 E-value=21 Score=33.27 Aligned_cols=55 Identities=9% Similarity=-0.046 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCCCeeeecc-------chhHHHHHHhhc-cCCCCHHHHHHHhhhhhceEe
Q 039627 123 LEIAMNHIHYEDEASRYMTIGC-------VEKPLNMLSCWV-EDPNSDYFKKHLSRISEYLWV 177 (185)
Q Consensus 123 ~~~a~~~i~~~~e~t~~~~i~p-------~~~~~~ml~~lg-~~~d~p~~~~~~~~l~~~l~~ 177 (185)
.-.|.+||++.|-.+|.+|.+. +.+|+-++.||- -...+..+.++++-|++-++.
T Consensus 52 Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~~i~rGl~fl~~nl~~ 114 (727)
T 3pya_A 52 FPSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNLFPHQCNKGITFFRENIGK 114 (727)
T ss_dssp CHHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 4678999999999999888432 234444444442 123345899999888865543
No 15
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=30.87 E-value=83 Score=26.17 Aligned_cols=61 Identities=11% Similarity=0.019 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeeeccc---hh-----HHHHHHhhc--cCCCCHHHHHHHhhhhhceEecCCc
Q 039627 119 REKSLEIAMNHIHYEDEASRYMTIGCV---EK-----PLNMLSCWV--EDPNSDYFKKHLSRISEYLWVGEDG 181 (185)
Q Consensus 119 R~~A~~~a~~~i~~~~e~t~~~~i~p~---~~-----~~~ml~~lg--~~~d~p~~~~~~~~l~~~l~~~~dg 181 (185)
.+.++++++++++..|..+|.++.-.. +. ++.++...+ +..+++.++++++-|.+.. .+||
T Consensus 89 ~~~~i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q--~~dG 159 (367)
T 1hzf_A 89 AVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQ--QADG 159 (367)
T ss_dssp HHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGB--CTTS
T ss_pred HHHHHHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhh--ccCC
Confidence 456789999999999988886652111 11 122222223 4567889999999887653 4454
No 16
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=28.89 E-value=41 Score=29.21 Aligned_cols=57 Identities=7% Similarity=-0.097 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeee-ecc---------------chhHHHHHHhhccC-------------CCCHHHHHHH
Q 039627 118 LREKSLEIAMNHIHYEDEASRYMT-IGC---------------VEKPLNMLSCWVED-------------PNSDYFKKHL 168 (185)
Q Consensus 118 lR~~A~~~a~~~i~~~~e~t~~~~-i~p---------------~~~~~~ml~~lg~~-------------~d~p~~~~~~ 168 (185)
--+.|++++.+||+.=|-.+|.++ +-| +..++.||..++++ ..+++++|++
T Consensus 172 ~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~~~~~~~av~Rgi 251 (408)
T 1r76_A 172 PYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTRALEATNAAI 251 (408)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhhhhhHHHHHHHHH
Confidence 567899999999999996655442 222 23456666666663 3467788888
Q ss_pred hhhhhc
Q 039627 169 SRISEY 174 (185)
Q Consensus 169 ~~l~~~ 174 (185)
+=|.+-
T Consensus 252 ~~Ll~~ 257 (408)
T 1r76_A 252 HCIVET 257 (408)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 755543
No 17
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=28.08 E-value=1.2e+02 Score=25.22 Aligned_cols=60 Identities=10% Similarity=0.068 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHh-cCCCeeeeccchhHHHHHHhhccCCCCHHHHHHHhhhhhceEecCCcee
Q 039627 120 EKSLEIAMNHIHYED-EASRYMTIGCVEKPLNMLSCWVEDPNSDYFKKHLSRISEYLWVGEDGMK 183 (185)
Q Consensus 120 ~~A~~~a~~~i~~~~-e~t~~~~i~p~~~~~~ml~~lg~~~d~p~~~~~~~~l~~~l~~~~dg~~ 183 (185)
..++++|.+|+..+. .+. . .+-..++.+++.--.+..+...++.++.|+++...+++|++
T Consensus 213 ~~~i~ra~~yL~~~~~~~~--~--~~y~~Al~ayAL~l~~~~~~~~~~~~~~L~~~a~~~~~~~~ 273 (367)
T 1hzf_A 213 EASISKASSFLGEKASAGL--L--GAHAAAITAYALTLTKAPADLRGVAHNNLMAMAQETGDNLY 273 (367)
T ss_dssp HHHHHHHHHHHHHHHHHTC--C--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCEECSSCEE
T ss_pred HHHHHHHHHHHHHhhhccc--C--CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhcCCCCc
Confidence 458999999998883 321 1 44445555444433444445556777888888766555543
No 18
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=22.31 E-value=91 Score=27.03 Aligned_cols=55 Identities=11% Similarity=0.026 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeeeeccchhHHHHHHhh---ccCCCC--HHHHHHHhhhhh
Q 039627 117 QLREKSLEIAMNHIHYEDEASRYMTIGCVEKPLNMLSCW---VEDPNS--DYFKKHLSRISE 173 (185)
Q Consensus 117 ~lR~~A~~~a~~~i~~~~e~t~~~~i~p~~~~~~ml~~l---g~~~d~--p~~~~~~~~l~~ 173 (185)
..=++|++.+.++|+.++..+|++| . +..|-.++.+| |..++. -...++++.+..
T Consensus 202 ~~i~~al~~l~~~l~~~Q~~dG~FG-N-~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~ 261 (414)
T 2bb6_A 202 NRINLALKRVQEKILKAQTPEGYFG-N-VYSTPLALQLLMGSLRPSVELGTACLKAKAALQA 261 (414)
T ss_dssp HHHHHHHHHHHHHHHHTBCTTSCBS-S-TTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCcc-c-hhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH
Confidence 3455677777799999999999885 3 44455666666 332222 255666666654
No 19
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=21.48 E-value=58 Score=28.25 Aligned_cols=21 Identities=10% Similarity=-0.043 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhcC-CCee
Q 039627 120 EKSLEIAMNHIHYEDEA-SRYM 140 (185)
Q Consensus 120 ~~A~~~a~~~i~~~~e~-t~~~ 140 (185)
..|+++++++|+.+||. +|.+
T Consensus 244 ~~av~Rgi~~Ll~~Qe~~dGsw 265 (408)
T 1r76_A 244 LEATNAAIHCIVETQVVQDGKR 265 (408)
T ss_dssp HHHHHHHHHHHHHHSCEETTEE
T ss_pred HHHHHHHHHHHHHhhcccCCcc
Confidence 35799999999999998 7754
No 20
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=20.62 E-value=57 Score=27.09 Aligned_cols=50 Identities=4% Similarity=-0.015 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCCeeeecc-----chhH---HHHHHhhccCCCCHHHHHHHhhhhh
Q 039627 123 LEIAMNHIHYEDEASRYMTIGC-----VEKP---LNMLSCWVEDPNSDYFKKHLSRISE 173 (185)
Q Consensus 123 ~~~a~~~i~~~~e~t~~~~i~p-----~~~~---~~ml~~lg~~~d~p~~~~~~~~l~~ 173 (185)
.+++.+||...|+.+|.++-.+ +-.+ +.++..+|+ .+++.++++++=|.+
T Consensus 116 ~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~-~~~~~~~k~v~~L~s 173 (331)
T 3dss_B 116 VDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGK-LDAINVEKAIEFVLS 173 (331)
T ss_dssp HHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTC-GGGSCHHHHHHHHHT
T ss_pred HHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 6789999999998888664121 2223 333334454 455667777775544
Done!