Citrus Sinensis ID: 039631

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
MTHHVAAVFTIIIFIINHLANSANGGGGDGAVIPPEKSQIGSWFTANVKPYTERKTTLDPALSTAQAGQRVIKVNQDGSGEFKTINDAINSIPQGNTKRVILSIGAGEYVEKIKIDRSKPFITFYGSPDAMPNVTFGGTAKEYGTVDSATLIVESDYFMAVNIIIANSSPRPDGKREGAQAVALRISGTKAAFYNCKIIGFQDTLCDDRGNHFFKDCHIQGTVDFIFGSGKSLYLSTELRAMGDTGLTVITAHARESESEDNGFAFVHCTIEGSGNGTYLGRAWKNSPRVVYAYTTMGNVVNRAGWSDNFRPERRQTVFYGEYKCSGPGASPAERVEYTKQLSDAEARPFLVLDYVQGNQWILPPPAKV
cHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccHHHHHHHcccccccEEEEEEEcEEEEEEEEEccccccEEEEEccccccEEEEccccccccccccEEEEEEcccEEEEccEEEccccccccccccccEEEEEEEccEEEEEccEEEcccccEEcccccEEEEccEEEEcccEEEcccEEEEEccEEEEEcccccEEEEEccccccccccEEEEEccEEEEcccccccccccccccEEEEEccccccccccccccccccccccccEEEEEEccccccccccccccccccccHHHHcccccccEEccccccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHccccccccccccccccccEEEEcccccccccHHHHHHHcccccccEEEEEEEccEEEEEEEEccccEEEEEEEcccccEEEEEcccccccccEEEEEEEEEcccEEEEEEEEEcccccccccccccccEEEccccccEEEEEEEEEcccccEEEcccEEEEEccEEEEcEEEEEEccEEEEEccEEEEccccccEEEEEccccccccccEEEEEccEEEcccccccccccHHHHccEEEEEccccccccccccccccccccccEEEEEEEccccccccccccccccEEEcHHHHHHccHHHHHccccccccccccc
MTHHVAAVFTIIIFIINHlansanggggdgavippeksqigswftanvkpyterkttldpalstaqAGQRVIKVnqdgsgefktindainsipqgntkRVILSIgageyvekikidrskpfitfygspdampnvtfggtakeygtvdsatlIVESDYFMAVNIIIanssprpdgkreGAQAVALRISGtkaafynckiigfqdtlcddrgnhffkdchiqgTVDFIFGSGKSLYLSTELRAMGDTGLTVITAHaresesedngfAFVHCTiegsgngtylgrawknspRVVYAYTTMGNvvnragwsdnfrperrqtvfygeykcsgpgaspaeRVEYTKQlsdaearpfLVLDYvqgnqwilpppakv
MTHHVAAVFTIIIFIINHLANSANGGGGDGAVIPPEKSQIGSWFTANVKPYTERKTTLdpalstaqagqRVIKVNQDGSGEFKTIndainsipqgntkRVILSIGAGEYVEKIKIDRSKPFITFYGSPDAMPNVTFGGTAKEYGTVDSATLIVESDYFMAVNIIIanssprpdgkrEGAQAVALRISGTKAAFYNCKIIGFQDTLCDDRGNHFFKDCHIQGTVDFIFGSGKSLYLSTELRAMGDTGLTVITAHARESESEDNGFAFVHCTIEGSGNGTYLGRAWKNSPRVVYAYTTMGNVVnragwsdnfrpERRQTVFYGEYKCSGPGASPAERVEYTKQLSDAEARPFLVLDYVqgnqwilpppakv
MTHHVAAVFTiiifiiNHLANSANggggdgAVIPPEKSQIGSWFTANVKPYTERKTTLDPALSTAQAGQRVIKVNQDGSGEFKTINDAINSIPQGNTKRVILSIGAGEYVEKIKIDRSKPFITFYGSPDAMPNVTFGGTAKEYGTVDSATLIVESDYFMAVNIIIANSSPRPDGKREGAQAVALRISGTKAAFYNCKIIGFQDTLCDDRGNHFFKDCHIQGTVDFIFGSGKSLYLSTELRAMGDTGLTVITAHARESESEDNGFAFVHCTIEGSGNGTYLGRAWKNSPRVVYAYTTMGNVVNRAGWSDNFRPERRQTVFYGEYKCSGPGASPAERVEYTKQLSDAEARPFLVLDYVQGNQWILPPPAKV
***HVAAVFTIIIFIINHLANSANGGGGDGAVI****SQIGSWFTANVKPYTE*****************VIKV******EFKTINDAINSIPQGNTKRVILSIGAGEYVEKIKIDRSKPFITFYGSPDAMPNVTFGGTAKEYGTVDSATLIVESDYFMAVNIIIA**************AVALRISGTKAAFYNCKIIGFQDTLCDDRGNHFFKDCHIQGTVDFIFGSGKSLYLSTELRAMGDTGLTVITAHA******DNGFAFVHCTIEGSGNGTYLGRAWKNSPRVVYAYTTMGNVVNRAGWSDNFRPERRQTVFYGEYKCS******************AEARPFLVLDYVQGNQWIL******
********FTIIIFIINHLAN********************************************QAGQRVIKVNQDGSGEFKTINDAINSIPQGNTKRVILSIGAGEYVEKIKIDRSKPFITFYGSPDAMPNVTFGGTAKEYGTVDSATLIVESDYFMAVNIIIANSSPRPDGKREGAQAVALRISGTKAAFYNCKIIGFQDTLCDDRGNHFFKDCHIQGTVDFIFGSGKSLYLSTELRAMGDTGLTVITAHARESESEDNGFAFVHCTIEGSGNGTYLGRAWKNSPRVVYAYTTMGNVVNRAGWSDNFRPERRQTVFYGEYKCSGPGASPAERVEYTKQLSDAEARPFLVLDYVQGNQWILPPP***
MTHHVAAVFTIIIFIINHLANSANGGGGDGAVIPPEKSQIGSWFTANVKPYTERKTTLDPALSTAQAGQRVIKVNQDGSGEFKTINDAINSIPQGNTKRVILSIGAGEYVEKIKIDRSKPFITFYGSPDAMPNVTFGGTAKEYGTVDSATLIVESDYFMAVNIIIANSS***********AVALRISGTKAAFYNCKIIGFQDTLCDDRGNHFFKDCHIQGTVDFIFGSGKSLYLSTELRAMGDTGLTVITAHARESESEDNGFAFVHCTIEGSGNGTYLGRAWKNSPRVVYAYTTMGNVVNRAGWSDNFRPERRQTVFYGEYKCSGPGASPAERVEYTKQLSDAEARPFLVLDYVQGNQWILPPPAKV
MTHHVAAVFTIIIFIINHLANSANGGGGD*********QIGSWFTANVKPYTERKTTLDPALSTAQAGQRVIKVNQDGSGEFKTINDAINSIPQGNTKRVILSIGAGEYVEKIKIDRSKPFITFYGSPDAMPNVTFGGTAKEYGTVDSATLIVESDYFMAVNIIIANSSPRPDGKREGAQAVALRISGTKAAFYNCKIIGFQDTLCDDRGNHFFKDCHIQGTVDFIFGSGKSLYLSTELRAMGDTGLTVITAHARESESEDNGFAFVHCTIEGSGNGTYLGRAWKNSPRVVYAYTTMGNVVNRAGWSDNFRPERRQTVFYGEYKCSGPGASPAERVEYTKQLSDAEARPFLVLDYVQGNQWILPP****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MTHHVAAVFTIIIFIINHLANSANGGGGDGAVIPPEKSQIGSWFTANVKPYTERKTTLDPALSTAQAGQRVIKVNQDGSGEFKTINDAINSIPQGNTKRVILSIGAGEYVEKIKIDRSKPFITFYGSPDAMPNVTFGGTAKEYGTVDSATLIVESDYFMAVNIIIANSSPRPDGKREGAQAVALRISGTKAAFYNCKIIGFQDTLCDDRGNHFFKDCHIQGTVDFIFGSGKSLYLSTELRAMGDTGLTVITAHARESESEDNGFAFVHCTIEGSGNGTYLGRAWKNSPRVVYAYTTMGNVVNRAGWSDNFRPERRQTVFYGEYKCSGPGASPAERVEYTKQLSDAEARPFLVLDYVQGNQWILPPPAKV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query369 2.2.26 [Sep-21-2011]
Q84WM7361 Pectinesterase PPME1 OS=A yes no 0.899 0.919 0.605 1e-122
Q9LY19361 Probable pectinesterase 4 yes no 0.899 0.919 0.6 1e-120
Q9FKF3338 Putative pectinesterase 6 no no 0.905 0.988 0.556 1e-116
Q9LY18361 Probable pectinesterase 4 no no 0.902 0.922 0.561 1e-113
Q9LY17361 Probable pectinesterase 5 no no 0.910 0.930 0.550 1e-111
B2VPR8364 Pectinesterase 2 OS=Olea N/A no 0.948 0.961 0.542 1e-109
D8VPP5364 Pectinesterase 1 OS=Olea N/A no 0.948 0.961 0.537 1e-108
Q8VYZ3383 Probable pectinesterase 5 no no 0.772 0.744 0.445 8e-66
Q8LPF3362 Probable pectinesterase 6 no no 0.810 0.825 0.394 4e-62
Q9FM79380 Pectinesterase QRT1 OS=Ar no no 0.788 0.765 0.415 7e-61
>sp|Q84WM7|PPME1_ARATH Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1 Back     alignment and function desciption
 Score =  438 bits (1126), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 203/335 (60%), Positives = 255/335 (76%), Gaps = 3/335 (0%)

Query: 33  IPPEKSQIGSWFTANVKPYTERKTTLDPALSTAQAGQRVIKVNQDGSGEFKTINDAINSI 92
           IP  K Q+  WF ANV P  +RK  LDPAL  A+A  R+I VN  G GEFKT+ DAI S+
Sbjct: 29  IPEGKPQVAQWFNANVGPLAQRKG-LDPALVAAEAAPRIINVNPKG-GEFKTLTDAIKSV 86

Query: 93  PQGNTKRVILSIGAGEYVEKIKIDRSKPFITFYGSPDAMPNVTFGGTAKEYGTVDSATLI 152
           P GNTKRVI+ +  GEY EK+ IDR+KPFIT  G P+AMP +T+ GTA +YGTVDSA+LI
Sbjct: 87  PAGNTKRVIIKMAPGEYKEKVTIDRNKPFITLMGQPNAMPVITYDGTAAKYGTVDSASLI 146

Query: 153 VESDYFMAVNIIIANSSPRPDGKREGAQAVALRISGTKAAFYNCKIIGFQDTLCDDRGNH 212
           + SDYFMAVNI++ N++P PDGK +GAQA+++RISG  AAFYNCK  GFQDT+CDD GNH
Sbjct: 147 ILSDYFMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNH 206

Query: 213 FFKDCHIQGTVDFIFGSGKSLYLSTELRAMGDTGLTVITAHARESESEDNGFAFVHCTIE 272
           FFKDC+++GT DFIFGSG S+YL T+L  +GD G+ VI AHA +S  E +G++FVHC + 
Sbjct: 207 FFKDCYVEGTFDFIFGSGTSMYLGTQLHVVGD-GIRVIAAHAGKSAEEKSGYSFVHCKVT 265

Query: 273 GSGNGTYLGRAWKNSPRVVYAYTTMGNVVNRAGWSDNFRPERRQTVFYGEYKCSGPGASP 332
           G+G G YLGRAW + P+VVYAYT M +VVN  GW +N  P   +TVFYGEYKCSGPG+  
Sbjct: 266 GTGGGIYLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYKCSGPGSHK 325

Query: 333 AERVEYTKQLSDAEARPFLVLDYVQGNQWILPPPA 367
           A+RV +T+ + D EA  FL L Y+QG++W+LPPPA
Sbjct: 326 AKRVPFTQDIDDKEANRFLSLGYIQGSKWLLPPPA 360
Acts in the modification of cell walls via demethylesterification of cell wall pectin. Involved in the pollen tube growth and determination of pollen tube morphology.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q9LY19|PME48_ARATH Probable pectinesterase 48 OS=Arabidopsis thaliana GN=PME48 PE=2 SV=2 Back     alignment and function description
>sp|Q9FKF3|PME63_ARATH Putative pectinesterase 63 OS=Arabidopsis thaliana GN=PME63 PE=3 SV=2 Back     alignment and function description
>sp|Q9LY18|PME49_ARATH Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1 Back     alignment and function description
>sp|Q9LY17|PME50_ARATH Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1 Back     alignment and function description
>sp|B2VPR8|AL11B_OLEEU Pectinesterase 2 OS=Olea europaea PE=1 SV=1 Back     alignment and function description
>sp|D8VPP5|AL11A_OLEEU Pectinesterase 1 OS=Olea europaea PE=1 SV=1 Back     alignment and function description
>sp|Q8VYZ3|PME53_ARATH Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1 Back     alignment and function description
>sp|Q8LPF3|PME68_ARATH Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1 Back     alignment and function description
>sp|Q9FM79|PME62_ARATH Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query369
356499962369 PREDICTED: pectinesterase PPME1-like [Gl 0.915 0.915 0.653 1e-135
359490099368 PREDICTED: pectinesterase PPME1-like [Vi 0.981 0.983 0.610 1e-133
356498095369 PREDICTED: pectinesterase PPME1-like [Gl 0.915 0.915 0.647 1e-133
225454938369 PREDICTED: pectinesterase PPME1 [Vitis v 0.915 0.915 0.642 1e-132
356495260369 PREDICTED: pectinesterase PPME1-like [Gl 0.970 0.970 0.617 1e-132
356498067369 PREDICTED: pectinesterase PPME1-like [Gl 0.970 0.970 0.617 1e-132
224119926364 predicted protein [Populus trichocarpa] 0.915 0.928 0.634 1e-129
225454944393 PREDICTED: pectinesterase PPME1-like [Vi 0.991 0.931 0.589 1e-127
297744956397 unnamed protein product [Vitis vinifera] 0.991 0.921 0.589 1e-127
224091737368 predicted protein [Populus trichocarpa] 0.991 0.994 0.585 1e-126
>gi|356499962|ref|XP_003518804.1| PREDICTED: pectinesterase PPME1-like [Glycine max] Back     alignment and taxonomy information
 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 221/338 (65%), Positives = 273/338 (80%)

Query: 29  DGAVIPPEKSQIGSWFTANVKPYTERKTTLDPALSTAQAGQRVIKVNQDGSGEFKTINDA 88
           D   IP  K+Q+G+WF+ NV P  +RK+T+DPAL  A+ G +V+KV QDGSGEFKTI DA
Sbjct: 28  DTVPIPAHKAQLGTWFSTNVGPLDQRKSTMDPALVAAEEGAKVVKVMQDGSGEFKTITDA 87

Query: 89  INSIPQGNTKRVILSIGAGEYVEKIKIDRSKPFITFYGSPDAMPNVTFGGTAKEYGTVDS 148
           INSIP GNTKRVI+ IGAG Y EKIKI+++KPFIT YG P+ MPN+TFGGTA +YGTVDS
Sbjct: 88  INSIPSGNTKRVIVYIGAGNYNEKIKIEKTKPFITLYGVPEKMPNLTFGGTALKYGTVDS 147

Query: 149 ATLIVESDYFMAVNIIIANSSPRPDGKREGAQAVALRISGTKAAFYNCKIIGFQDTLCDD 208
           ATLIVESDYF+A NIII+NS+PRPDGK +G QAVALRISG KAAFYNCK  GFQDT+CDD
Sbjct: 148 ATLIVESDYFVAANIIISNSAPRPDGKIQGGQAVALRISGDKAAFYNCKFFGFQDTICDD 207

Query: 209 RGNHFFKDCHIQGTVDFIFGSGKSLYLSTELRAMGDTGLTVITAHARESESEDNGFAFVH 268
           R  HFFKDC IQGT+D+IFGSGKSLYLSTELR +GDTG+TVI A AR+S +EDN ++FVH
Sbjct: 208 RNRHFFKDCLIQGTMDYIFGSGKSLYLSTELRTLGDTGITVIVAQARKSPTEDNAYSFVH 267

Query: 269 CTIEGSGNGTYLGRAWKNSPRVVYAYTTMGNVVNRAGWSDNFRPERRQTVFYGEYKCSGP 328
           C + G+GNGT+LGRAW   PRVV+AY+TM  VV + GWS+N  PE  + V +GEY+ +GP
Sbjct: 268 CDVTGTGNGTFLGRAWMPHPRVVFAYSTMSAVVKKEGWSNNNHPEHDKNVRFGEYQNTGP 327

Query: 329 GASPAERVEYTKQLSDAEARPFLVLDYVQGNQWILPPP 366
           GA P  R   T QL++ + +P++ L  ++G++W+LPPP
Sbjct: 328 GADPKGRAAITTQLNEMQVKPYITLGMIEGSKWLLPPP 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359490099|ref|XP_003634032.1| PREDICTED: pectinesterase PPME1-like [Vitis vinifera] gi|297744955|emb|CBI38547.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356498095|ref|XP_003517889.1| PREDICTED: pectinesterase PPME1-like [Glycine max] Back     alignment and taxonomy information
>gi|225454938|ref|XP_002277202.1| PREDICTED: pectinesterase PPME1 [Vitis vinifera] gi|297744954|emb|CBI38546.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356495260|ref|XP_003516497.1| PREDICTED: pectinesterase PPME1-like [Glycine max] Back     alignment and taxonomy information
>gi|356498067|ref|XP_003517875.1| PREDICTED: pectinesterase PPME1-like [Glycine max] Back     alignment and taxonomy information
>gi|224119926|ref|XP_002318197.1| predicted protein [Populus trichocarpa] gi|224119934|ref|XP_002318199.1| predicted protein [Populus trichocarpa] gi|222858870|gb|EEE96417.1| predicted protein [Populus trichocarpa] gi|222858872|gb|EEE96419.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225454944|ref|XP_002277388.1| PREDICTED: pectinesterase PPME1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744956|emb|CBI38548.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224091737|ref|XP_002309337.1| predicted protein [Populus trichocarpa] gi|222855313|gb|EEE92860.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query369
TAIR|locus:2196805361 PPME1 [Arabidopsis thaliana (t 0.899 0.919 0.605 1.5e-113
TAIR|locus:2183334361 AT5G07410 [Arabidopsis thalian 0.899 0.919 0.6 5.9e-112
TAIR|locus:2151586338 AT5G61680 [Arabidopsis thalian 0.794 0.866 0.636 1.7e-105
TAIR|locus:2183349361 AT5G07420 [Arabidopsis thalian 0.902 0.922 0.561 4.1e-104
TAIR|locus:2183364361 AT5G07430 [Arabidopsis thalian 0.899 0.919 0.553 1.6e-102
TAIR|locus:2183214383 AT5G19730 [Arabidopsis thalian 0.772 0.744 0.445 3e-62
TAIR|locus:2162102380 QRT1 "QUARTET 1" [Arabidopsis 0.848 0.823 0.403 5.5e-61
TAIR|locus:2040535407 AT2G36710 [Arabidopsis thalian 0.788 0.714 0.414 1.7e-59
TAIR|locus:2169023362 PME5 "pectin methylesterase 5" 0.810 0.825 0.394 3.5e-59
TAIR|locus:2207245393 AT1G05310 [Arabidopsis thalian 0.777 0.730 0.406 4.6e-57
TAIR|locus:2196805 PPME1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1120 (399.3 bits), Expect = 1.5e-113, P = 1.5e-113
 Identities = 203/335 (60%), Positives = 255/335 (76%)

Query:    33 IPPEKSQIGSWFTANVKPYTERKTTLDPALSTAQAGQRVIKVNQDGSGEFKTINDAINSI 92
             IP  K Q+  WF ANV P  +RK  LDPAL  A+A  R+I VN  G GEFKT+ DAI S+
Sbjct:    29 IPEGKPQVAQWFNANVGPLAQRKG-LDPALVAAEAAPRIINVNPKG-GEFKTLTDAIKSV 86

Query:    93 PQGNTKRVILSIGAGEYVEKIKIDRSKPFITFYGSPDAMPNVTFGGTAKEYGTVDSATLI 152
             P GNTKRVI+ +  GEY EK+ IDR+KPFIT  G P+AMP +T+ GTA +YGTVDSA+LI
Sbjct:    87 PAGNTKRVIIKMAPGEYKEKVTIDRNKPFITLMGQPNAMPVITYDGTAAKYGTVDSASLI 146

Query:   153 VESDYFMAVNIIIANSSPRPDGKREGAQAVALRISGTKAAFYNCKIIGFQDTLCDDRGNH 212
             + SDYFMAVNI++ N++P PDGK +GAQA+++RISG  AAFYNCK  GFQDT+CDD GNH
Sbjct:   147 ILSDYFMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNH 206

Query:   213 FFKDCHIQGTVDFIFGSGKSLYLSTELRAMGDTGLTVITAHARESESEDNGFAFVHCTIE 272
             FFKDC+++GT DFIFGSG S+YL T+L  +GD G+ VI AHA +S  E +G++FVHC + 
Sbjct:   207 FFKDCYVEGTFDFIFGSGTSMYLGTQLHVVGD-GIRVIAAHAGKSAEEKSGYSFVHCKVT 265

Query:   273 GSGNGTYLGRAWKNSPRVVYAYTTMGNVVNRAGWSDNFRPERRQTVFYGEYKCSGPGASP 332
             G+G G YLGRAW + P+VVYAYT M +VVN  GW +N  P   +TVFYGEYKCSGPG+  
Sbjct:   266 GTGGGIYLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYKCSGPGSHK 325

Query:   333 AERVEYTKQLSDAEARPFLVLDYVQGNQWILPPPA 367
             A+RV +T+ + D EA  FL L Y+QG++W+LPPPA
Sbjct:   326 AKRVPFTQDIDDKEANRFLSLGYIQGSKWLLPPPA 360
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS;IDA
GO:0030599 "pectinesterase activity" evidence=IEA;ISS;IMP
GO:0042545 "cell wall modification" evidence=IEA
GO:0005783 "endoplasmic reticulum" evidence=NAS
GO:0005794 "Golgi apparatus" evidence=NAS
GO:0009860 "pollen tube growth" evidence=IDA;IMP
GO:0090406 "pollen tube" evidence=IDA
TAIR|locus:2183334 AT5G07410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151586 AT5G61680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183349 AT5G07420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183364 AT5G07430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183214 AT5G19730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162102 QRT1 "QUARTET 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040535 AT2G36710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169023 PME5 "pectin methylesterase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207245 AT1G05310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B2VPR8AL11B_OLEEU3, ., 1, ., 1, ., 1, 10.54290.94850.9615N/Ano
D8VPP5AL11A_OLEEU3, ., 1, ., 1, ., 1, 10.53730.94850.9615N/Ano
Q84WM7PPME1_ARATH3, ., 1, ., 1, ., 1, 10.60590.89970.9196yesno
Q9LY19PME48_ARATH3, ., 1, ., 1, ., 1, 10.60.89970.9196yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.946
3rd Layer3.1.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_XII000414
annotation not avaliable (364 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query369
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 0.0
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 1e-105
PLN02671359 PLN02671, PLN02671, pectinesterase 9e-90
PLN02304379 PLN02304, PLN02304, probable pectinesterase 2e-89
PLN02432293 PLN02432, PLN02432, putative pectinesterase 3e-88
PLN02634359 PLN02634, PLN02634, probable pectinesterase 5e-85
PLN02773317 PLN02773, PLN02773, pectinesterase 3e-76
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 1e-72
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 2e-70
PLN02497331 PLN02497, PLN02497, probable pectinesterase 1e-63
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 3e-59
PLN02314586 PLN02314, PLN02314, pectinesterase 2e-49
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 2e-48
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 2e-48
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 3e-47
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-46
PLN02176340 PLN02176, PLN02176, putative pectinesterase 2e-46
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 3e-46
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-44
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 4e-44
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 3e-43
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 4e-43
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 6e-43
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 7e-43
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-41
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 2e-41
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 4e-41
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-39
PLN02197588 PLN02197, PLN02197, pectinesterase 6e-36
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 1e-33
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 3e-32
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 1e-31
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 3e-29
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 6e-22
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information 
 Score =  639 bits (1651), Expect = 0.0
 Identities = 243/367 (66%), Positives = 292/367 (79%), Gaps = 2/367 (0%)

Query: 1   MTHHVAAVFTIIIFIINHLANSANGGGGDGAVIPPEKSQIGSWFTANVKPYTERKTTLDP 60
           M   +A +   I  ++  ++ +      D   IP +KSQ+  WF ANVKPY +RK TLDP
Sbjct: 1   MMTSIAIIACAIAALVVLVSPTV--SSDDTTPIPADKSQLNQWFQANVKPYAQRKGTLDP 58

Query: 61  ALSTAQAGQRVIKVNQDGSGEFKTINDAINSIPQGNTKRVILSIGAGEYVEKIKIDRSKP 120
           AL  A+A  R+IKV +DGSG+FKTI DAI SIP GNT+RVI+ IG GEY EKI IDRSKP
Sbjct: 59  ALEAAEAAPRIIKVRKDGSGDFKTITDAIKSIPAGNTQRVIIDIGPGEYNEKITIDRSKP 118

Query: 121 FITFYGSPDAMPNVTFGGTAKEYGTVDSATLIVESDYFMAVNIIIANSSPRPDGKREGAQ 180
           F+T YGSP AMP +TF GTA +YGTV SATLIVESDYFMA NIII NS+PRPDGKR+GAQ
Sbjct: 119 FVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIVESDYFMAANIIIKNSAPRPDGKRKGAQ 178

Query: 181 AVALRISGTKAAFYNCKIIGFQDTLCDDRGNHFFKDCHIQGTVDFIFGSGKSLYLSTELR 240
           AVA+RISG KAAFYNC+ IGFQDTLCDD+G HFFKDC+I+GTVDFIFGSGKSLYL+TEL 
Sbjct: 179 AVAMRISGDKAAFYNCRFIGFQDTLCDDKGRHFFKDCYIEGTVDFIFGSGKSLYLNTELH 238

Query: 241 AMGDTGLTVITAHARESESEDNGFAFVHCTIEGSGNGTYLGRAWKNSPRVVYAYTTMGNV 300
            +GD GL VITA AR SE+ED+GF+FVHC + G+G G YLGRAW + PRVV+AYT M +V
Sbjct: 239 VVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTGTGAYLGRAWMSRPRVVFAYTEMSSV 298

Query: 301 VNRAGWSDNFRPERRQTVFYGEYKCSGPGASPAERVEYTKQLSDAEARPFLVLDYVQGNQ 360
           VN  GWS+N  PER +TVFYGEYKC+GPGA+P+ RV++TKQL D EA+PFL L Y++G++
Sbjct: 299 VNPEGWSNNKHPERDKTVFYGEYKCTGPGANPSGRVKFTKQLDDKEAKPFLSLGYIEGSK 358

Query: 361 WILPPPA 367
           W+LPPP 
Sbjct: 359 WLLPPPN 365

Length = 366
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 369
PLN02665366 pectinesterase family protein 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02634359 probable pectinesterase 100.0
PLN02497331 probable pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02671359 pectinesterase 100.0
PLN02304379 probable pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PLN02480343 Probable pectinesterase 100.0
PLN02773317 pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.34
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.5
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.43
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.36
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.06
PLN02480343 Probable pectinesterase 96.89
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 96.86
PLN02682369 pectinesterase family protein 96.82
PLN02773317 pectinesterase 96.66
KOG1777 625 consensus Putative Zn-finger protein [General func 96.57
PRK10531422 acyl-CoA thioesterase; Provisional 96.52
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.34
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.32
PLN02432293 putative pectinesterase 96.23
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 96.2
PLN02671359 pectinesterase 96.17
PLN02497331 probable pectinesterase 96.15
PLN02665366 pectinesterase family protein 96.11
PLN02634359 probable pectinesterase 95.99
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 95.98
PLN02176340 putative pectinesterase 95.88
PLN02793443 Probable polygalacturonase 95.87
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 95.8
PLN02304379 probable pectinesterase 95.77
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 95.69
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 95.64
PLN02416541 probable pectinesterase/pectinesterase inhibitor 95.45
PLN02916502 pectinesterase family protein 95.42
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 95.37
PLN03003456 Probable polygalacturonase At3g15720 95.35
PLN02170529 probable pectinesterase/pectinesterase inhibitor 95.33
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 95.29
PLN02197588 pectinesterase 95.25
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 95.14
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 95.13
PLN02506537 putative pectinesterase/pectinesterase inhibitor 95.1
PLN02201520 probable pectinesterase/pectinesterase inhibitor 95.09
PLN02218431 polygalacturonase ADPG 94.75
PLN02484587 probable pectinesterase/pectinesterase inhibitor 94.71
PLN02314586 pectinesterase 94.67
PLN02468565 putative pectinesterase/pectinesterase inhibitor 94.52
PLN02488509 probable pectinesterase/pectinesterase inhibitor 94.52
PLN03010409 polygalacturonase 94.32
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 94.31
PLN02155394 polygalacturonase 93.74
PLN02301548 pectinesterase/pectinesterase inhibitor 93.69
smart00656190 Amb_all Amb_all domain. 93.41
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 93.09
PLN02313587 Pectinesterase/pectinesterase inhibitor 92.99
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 91.27
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 91.13
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 90.84
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 90.32
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 86.21
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 85.92
PLN02188404 polygalacturonase/glycoside hydrolase family prote 81.7
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 81.26
>PLN02665 pectinesterase family protein Back     alignment and domain information 
Probab=100.00  E-value=1.2e-106  Score=799.66  Aligned_cols=342  Identities=70%  Similarity=1.222  Sum_probs=323.2

Q ss_pred             CCCCCCCCCCCCcccccccccCccccccccccCCchhhhccCCCceEEEcCCCCCCCccHHHHHHhCCCCCCceEEEEEe
Q 039631           26 GGGDGAVIPPEKSQIGSWFTANVKPYTERKTTLDPALSTAQAGQRVIKVNQDGSGEFKTINDAINSIPQGNTKRVILSIG  105 (369)
Q Consensus        26 ~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~dG~g~f~TIq~AI~aap~~~~~r~vI~I~  105 (369)
                      .+++..++|..+.+++.|+.....++..++..+++.+.++++.+.+|+|++||+|+|+|||+||+++|+++++|++|+|+
T Consensus        24 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~dG~Gdf~TIq~AIdaiP~~~~~r~vI~Ik  103 (366)
T PLN02665         24 SSDDTTPIPADKSQLNQWFQANVKPYAQRKGTLDPALEAAEAAPRIIKVRKDGSGDFKTITDAIKSIPAGNTQRVIIDIG  103 (366)
T ss_pred             ccccccccccchhHHHHHHHHHhhhhhccccccCcchhccccCceEEEEcCCCCCCccCHHHHHhhCcccCCceEEEEEe
Confidence            34467778888889999999888777778888998888777778999999999999999999999999999999999999


Q ss_pred             cceEeeeEEeecCCCceEEecCCCCCceEEecCcccccCcccceEEEEEcCcEEEEceEEecCCCCCCCCCCCCceEEEE
Q 039631          106 AGEYVEKIKIDRSKPFITFYGSPDAMPNVTFGGTAKEYGTVDSATLIVESDYFMAVNIIIANSSPRPDGKREGAQAVALR  185 (369)
Q Consensus       106 ~G~Y~E~V~I~~~k~~Itl~G~g~~~t~I~~~~~a~~~gt~~sat~~v~a~~f~a~~itf~Nta~~~~g~~~~~QAvAl~  185 (369)
                      ||+|+|+|.|+++||+|||+|++.++|+|+|++++..+||+.||||.|++++|+++||+|+|+++.+++...++||||||
T Consensus       104 ~GvY~EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~  183 (366)
T PLN02665        104 PGEYNEKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMR  183 (366)
T ss_pred             CcEEEEEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEE
Confidence            99999999999999999999999999999999998889999999999999999999999999998666555568999999


Q ss_pred             EeccceEEEeeEEEeccceeEeCCCcEEEEccEEeccceeEeccceeeEEEEEEEEecCCCcEEEEecCCCCCCCCeeEE
Q 039631          186 ISGTKAAFYNCKIIGFQDTLCDDRGNHFFKDCHIQGTVDFIFGSGKSLYLSTELRAMGDTGLTVITAHARESESEDNGFA  265 (369)
Q Consensus       186 v~gd~~~f~nC~f~G~QDTL~~~~gr~~f~~C~I~G~VDFIfG~g~a~f~~c~i~~~~~~~~~~ItA~~r~~~~~~~G~v  265 (369)
                      +.|||++||||+|+|||||||++.|||||++|+|+|+||||||+|+++||+|+|+++.+++.++||||+|+++.+++|||
T Consensus       184 v~gDka~f~~C~f~G~QDTL~~~~gr~yf~~CyIeG~VDFIFG~g~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~Gfv  263 (366)
T PLN02665        184 ISGDKAAFYNCRFIGFQDTLCDDKGRHFFKDCYIEGTVDFIFGSGKSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFS  263 (366)
T ss_pred             EcCCcEEEEcceeccccceeEeCCCCEEEEeeEEeeccceeccccceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEE
Confidence            99999999999999999999999999999999999999999999999999999999987556999999999888999999


Q ss_pred             EECcEEeecCCeEEEeecccCCCeEEEecccCCCccCCCCcCCCCCCCCcceeEEEEEcccCCCCCCCCceeecccCCHH
Q 039631          266 FVHCTIEGSGNGTYLGRAWKNSPRVVYAYTTMGNVVNRAGWSDNFRPERRQTVFYGEYKCSGPGASPAERVEYTKQLSDA  345 (369)
Q Consensus       266 f~~c~it~~~~~~yLGRpW~~~srvv~~~t~~~~~I~p~GW~~w~~~~~~~t~~f~EY~n~GpGa~~~~Rv~w~~~lt~~  345 (369)
                      |+||+|+|++..+||||||++|+||||++|+|+++|.|+||.+|+.++++++++|+||+|+|||+++++||+|+++|+++
T Consensus       264 F~~C~itg~~~~~yLGRpW~~ysrvVf~~t~m~~~I~p~GW~~w~~~~~~~t~~f~Ey~~~GpGa~~s~Rv~w~~~Lt~~  343 (366)
T PLN02665        264 FVHCKVTGTGTGAYLGRAWMSRPRVVFAYTEMSSVVNPEGWSNNKHPERDKTVFYGEYKCTGPGANPSGRVKFTKQLDDK  343 (366)
T ss_pred             EEeeEEecCCCceeecCCCCCcceEEEEccccCCeEccCccCCCCCCCCCCceEEEEEcccCCCCCccCCccccccCCHH
Confidence            99999999876799999999999999999999999999999999988888999999999999999999999999999999


Q ss_pred             HHcCCcccccccCCCCCCCCCC
Q 039631          346 EARPFLVLDYVQGNQWILPPPA  367 (369)
Q Consensus       346 ea~~ft~~~fi~g~~Wl~~~p~  367 (369)
                      ||++|+..+||+|++||++||.
T Consensus       344 ea~~f~~~~fi~g~~Wl~~~~~  365 (366)
T PLN02665        344 EAKPFLSLGYIEGSKWLLPPPN  365 (366)
T ss_pred             HHHhhhHhhccCCCCcCCCCCC
Confidence            9999999999999999999986

>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query369
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 3e-34
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 1e-33
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 1e-17
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 1e-17
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 1e-16
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 6e-15
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure 
Iteration: 1

 Score =  142 bits (358), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 154/306 (50%), Gaps = 25/306 (8%)
Query: 74  VNQDGSGEFKTINDAINSIPQGNTKRVILSIGAGEYVEKIKIDRSKPFITFYGSPDAMPN 133
           V QDG+G+++T+ +A+ + P  +  R ++ +  G Y E +++  +K  +   G  D M  
Sbjct: 7   VAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVG--DGMYA 64
Query: 134 VTFGGTAKEYG---TVDSATLIVESDYFMAVNIIIANSS-PRPDGKREGAQAVALRISGT 189
            T  G+        T  SATL      F+  +I I N++ P  D      QAVALR+   
Sbjct: 65  TTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKD------QAVALRVGAD 118
Query: 190 KAAFYNCKIIGFQDTLCDDRGNHFFKDCHIQGTVDFIFGSGKSLYLSTEL--RAMGDTGL 247
            +    C+I  +QDTL       F++D ++ GTVDFIFG+   ++   +L  R  G    
Sbjct: 119 MSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQ 178
Query: 248 TVITAHARESESEDNGFAFVHCTIEGSGN--------GTYLGRAWKNSPRVVYAYTTMGN 299
            ++TA  R   ++  G +   C I  S +         TYLGR WK   R V   + +G 
Sbjct: 179 NMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGG 238
Query: 300 VVNRAGWSDNFRPERRQTVFYGEYKCSGPGASPAERVEY--TKQLSD-AEARPFLVLDYV 356
           ++N AGW++       +T++YGE+  +GPGA  ++RV++     ++D A+A PF V   +
Sbjct: 239 LINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLI 298
Query: 357 QGNQWI 362
           QG  W+
Sbjct: 299 QGGSWL 304
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query369
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-119
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-117
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 3e-96
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-95
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 2e-81
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  347 bits (891), Expect = e-119
 Identities = 92/312 (29%), Positives = 149/312 (47%), Gaps = 19/312 (6%)

Query: 65  AQAGQRVIKVNQDGSGEFKTINDAINSIPQGNTKRVILSIGAGEYVEKIKIDRSKPFITF 124
           +      + V  DGSG++KT+++A+ + P+ +  R ++ I AG Y E + + + K  I F
Sbjct: 2   SSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMF 61

Query: 125 YGSPDAMPNVTFGGTAKE-YGTVDSATLIVESDYFMAVNIIIANSSPRPDGKREGAQAVA 183
            G       +T     ++   T +SAT+      F+A +I   N++          QAVA
Sbjct: 62  LGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKH-----QAVA 116

Query: 184 LRISGTKAAFYNCKIIGFQDTLCDDRGNHFFKDCHIQGTVDFIFGSGKSLYLSTEL--RA 241
           LR+    +AFY C I+ +QD+L       FF +C I GTVDFIFG+   +    ++  R 
Sbjct: 117 LRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARR 176

Query: 242 MGDTGLTVITAHARESESEDNGFAFVHCTIEGSGNG--------TYLGRAWKNSPRVVYA 293
            G     ++TA  R   +++ G       I  + +         TYLGR WK   R V  
Sbjct: 177 PGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVM 236

Query: 294 YTTMGNVVNRAGWSDNFRPERRQTVFYGEYKCSGPGASPAERV---EYTKQLSDAEARPF 350
            +++ NV+N AGW          T++YGEY+ +G GA+ + RV    +    S  EA+ F
Sbjct: 237 QSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGF 296

Query: 351 LVLDYVQGNQWI 362
               ++ G  W+
Sbjct: 297 TPGSFIAGGSWL 308
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query369
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.65
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.4
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.67
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.01
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.48
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.18
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.17
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.04
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 96.93
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 96.91
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.85
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 96.85
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 96.79
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 96.68
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 96.63
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 96.51
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 96.48
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 96.42
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 96.4
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.39
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 96.38
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.38
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.35
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.18
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.16
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 95.97
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 95.9
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 95.89
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 95.86
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 95.78
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 94.46
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 94.42
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 93.41
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 90.96
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 88.67
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 88.34
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 87.97
1vcl_A432 Hemolytic lectin CEL-III; hemolysis, hemagglutinat 86.7
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 81.49
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=2e-91  Score=683.55  Aligned_cols=294  Identities=30%  Similarity=0.518  Sum_probs=276.2

Q ss_pred             CceEEEcCCCCCCCccHHHHHHhCCCCCCceEEEEEecceEeeeEEeecCCCceEEecCCCCCceEEecCccc-ccCccc
Q 039631           69 QRVIKVNQDGSGEFKTINDAINSIPQGNTKRVILSIGAGEYVEKIKIDRSKPFITFYGSPDAMPNVTFGGTAK-EYGTVD  147 (369)
Q Consensus        69 ~~~i~V~~dG~g~f~TIq~AI~aap~~~~~r~vI~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~t~I~~~~~a~-~~gt~~  147 (369)
                      +.+|+|++||+|+|+|||+||+++|+++++|++|+|+||+|+|+|.|+++||+|+|+|++.++|+|++++... ..+|+.
T Consensus         2 ~~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~   81 (317)
T 1xg2_A            2 IANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFR   81 (317)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSGG
T ss_pred             CceEEECCCCCCCcccHHHHHhhcccCCCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCcccc
Confidence            3579999999999999999999999999999999999999999999999999999999999999999987643 468899


Q ss_pred             ceEEEEEcCcEEEEceEEecCCCCCCCCCCCCceEEEEEeccceEEEeeEEEeccceeEeCCCcEEEEccEEeccceeEe
Q 039631          148 SATLIVESDYFMAVNIIIANSSPRPDGKREGAQAVALRISGTKAAFYNCKIIGFQDTLCDDRGNHFFKDCHIQGTVDFIF  227 (369)
Q Consensus       148 sat~~v~a~~f~a~~itf~Nta~~~~g~~~~~QAvAl~v~gd~~~f~nC~f~G~QDTL~~~~gr~~f~~C~I~G~VDFIf  227 (369)
                      ++||.|.+++|+++||+|+|+++.     .++||+||++.+|+++||||+|+|+|||||++.+||||++|+|+|+|||||
T Consensus        82 satv~v~a~~f~~~~lt~~Nt~g~-----~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIf  156 (317)
T 1xg2_A           82 SATLAAVGQGFILQDICIQNTAGP-----AKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIF  156 (317)
T ss_dssp             GCSEEECSTTCEEESCEEEECCCG-----GGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEE
T ss_pred             eeEEEEECCCEEEEEeEEecccCC-----ccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEc
Confidence            999999999999999999999874     358999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeEEEEEEEEecC--CCcEEEEecCCCCCCCCeeEEEECcEEeecCC--------eEEEeecccCCCeEEEecccC
Q 039631          228 GSGKSLYLSTELRAMGD--TGLTVITAHARESESEDNGFAFVHCTIEGSGN--------GTYLGRAWKNSPRVVYAYTTM  297 (369)
Q Consensus       228 G~g~a~f~~c~i~~~~~--~~~~~ItA~~r~~~~~~~G~vf~~c~it~~~~--------~~yLGRpW~~~srvv~~~t~~  297 (369)
                      |+++++||+|+|+++++  ++.++||||+|+++.+++||||+||+|+++++        ++||||||++|+|+|||+|+|
T Consensus       157 G~~~avf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~  236 (317)
T 1xg2_A          157 GNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYL  236 (317)
T ss_dssp             ECCEEEEESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEEESCEE
T ss_pred             CCceEEEeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEEEeccc
Confidence            99999999999999874  56799999999999999999999999998763        689999999999999999999


Q ss_pred             CCccCCCCcCCCCCCCCcceeEEEEEcccCCCCCCCCceeecc--cC-CHHHHcCCcccccccCCCCCCCCCC
Q 039631          298 GNVVNRAGWSDNFRPERRQTVFYGEYKCSGPGASPAERVEYTK--QL-SDAEARPFLVLDYVQGNQWILPPPA  367 (369)
Q Consensus       298 ~~~I~p~GW~~w~~~~~~~t~~f~EY~n~GpGa~~~~Rv~w~~--~l-t~~ea~~ft~~~fi~g~~Wl~~~p~  367 (369)
                      +++|+|+||.+|+++.+.++++|+||+|+|||+++++||+|++  +| +++||++|+..+||+|++|+|+...
T Consensus       237 ~~~I~p~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~  309 (317)
T 1xg2_A          237 GGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGV  309 (317)
T ss_dssp             CTTBCTTCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGGGCC
T ss_pred             CCcccccccccCCCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCCCCc
Confidence            9999999999999888889999999999999999999999996  56 5799999999999999999997543
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1vcl_A Hemolytic lectin CEL-III; hemolysis, hemagglutination, pore-forming, calcium, toxin; HET: BTB; 1.70A {Cucumaria echinata} SCOP: b.42.2.1 b.42.2.1 d.281.1.1 PDB: 2z48_A* 2z49_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 369
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-101
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 7e-69
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  299 bits (768), Expect = e-101
 Identities = 92/305 (30%), Positives = 148/305 (48%), Gaps = 19/305 (6%)

Query: 72  IKVNQDGSGEFKTINDAINSIPQGNTKRVILSIGAGEYVEKIKIDRSKPFITFYGSPDAM 131
           + V  DGSG++KT+++A+ + P+ +  R ++ I AG Y E + + + K  I F G     
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTS 68

Query: 132 PNVTFGGTAKE-YGTVDSATLIVESDYFMAVNIIIANSSPRPDGKREGAQAVALRISGTK 190
             +T     ++   T +SAT+      F+A +I   N++          QAVALR+    
Sbjct: 69  TIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAA-----KHQAVALRVGSDL 123

Query: 191 AAFYNCKIIGFQDTLCDDRGNHFFKDCHIQGTVDFIFGSGKSLYLSTEL--RAMGDTGLT 248
           +AFY C I+ +QD+L       FF +C I GTVDFIFG+   +    ++  R  G     
Sbjct: 124 SAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKN 183

Query: 249 VITAHARESESEDNGFAFVHCTIEGSGN--------GTYLGRAWKNSPRVVYAYTTMGNV 300
           ++TA  R   +++ G       I  + +         TYLGR WK   R V   +++ NV
Sbjct: 184 MVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNV 243

Query: 301 VNRAGWSDNFRPERRQTVFYGEYKCSGPGASPAERVE---YTKQLSDAEARPFLVLDYVQ 357
           +N AGW          T++YGEY+ +G GA+ + RV    +    S  EA+ F    ++ 
Sbjct: 244 INPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIA 303

Query: 358 GNQWI 362
           G  W+
Sbjct: 304 GGSWL 308
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query369
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.02
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.73
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 97.96
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 96.46
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 96.29
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.01
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 95.92
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.42
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 95.17
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.16
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.14
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 95.11
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 94.91
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 94.69
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 91.08
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 90.49
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 88.55
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 82.47
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 82.05
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=5e-96  Score=712.62  Aligned_cols=294  Identities=31%  Similarity=0.549  Sum_probs=277.7

Q ss_pred             CCceEEEcCCCCCCCccHHHHHHhCCCCCCceEEEEEecceEeeeEEeecCCCceEEecCCCCCceEEecCccc-ccCcc
Q 039631           68 GQRVIKVNQDGSGEFKTINDAINSIPQGNTKRVILSIGAGEYVEKIKIDRSKPFITFYGSPDAMPNVTFGGTAK-EYGTV  146 (369)
Q Consensus        68 ~~~~i~V~~dG~g~f~TIq~AI~aap~~~~~r~vI~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~t~I~~~~~a~-~~gt~  146 (369)
                      ..++|+|++||+|||+|||+||+++|+++++|++|+|+||+|+|+|.|+++||+|+|+|++++.|+|+++.++. ..+|+
T Consensus         5 ~~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~t~   84 (319)
T d1gq8a_           5 VGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTF   84 (319)
T ss_dssp             SCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTG
T ss_pred             CCCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCCccc
Confidence            45679999999999999999999999999999999999999999999999999999999999999999987765 35789


Q ss_pred             cceEEEEEcCcEEEEceEEecCCCCCCCCCCCCceEEEEEeccceEEEeeEEEeccceeEeCCCcEEEEccEEeccceeE
Q 039631          147 DSATLIVESDYFMAVNIIIANSSPRPDGKREGAQAVALRISGTKAAFYNCKIIGFQDTLCDDRGNHFFKDCHIQGTVDFI  226 (369)
Q Consensus       147 ~sat~~v~a~~f~a~~itf~Nta~~~~g~~~~~QAvAl~v~gd~~~f~nC~f~G~QDTL~~~~gr~~f~~C~I~G~VDFI  226 (369)
                      .++||.|.+++|+++||+|+|+++.     .++|||||++.+||++||+|+|+|||||||++.|||||++|+|+|+||||
T Consensus        85 ~sat~~v~~~~f~a~nitf~Nt~g~-----~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFI  159 (319)
T d1gq8a_          85 NSATVAAVGAGFLARDITFQNTAGA-----AKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFI  159 (319)
T ss_dssp             GGCSEEECSTTCEEEEEEEEECCCG-----GGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCE
T ss_pred             cccceeeecCCeEEEeeEEEeCCCC-----CCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEE
Confidence            9999999999999999999999974     35899999999999999999999999999999999999999999999999


Q ss_pred             eccceeeEEEEEEEEecC--CCcEEEEecCCCCCCCCeeEEEECcEEeecCC--------eEEEeecccCCCeEEEeccc
Q 039631          227 FGSGKSLYLSTELRAMGD--TGLTVITAHARESESEDNGFAFVHCTIEGSGN--------GTYLGRAWKNSPRVVYAYTT  296 (369)
Q Consensus       227 fG~g~a~f~~c~i~~~~~--~~~~~ItA~~r~~~~~~~G~vf~~c~it~~~~--------~~yLGRpW~~~srvv~~~t~  296 (369)
                      ||+++++||+|+|+++.+  ++.++||||+|+++.+++||||++|+|+++++        ++||||||++++||||++|+
T Consensus       160 fG~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~  239 (319)
T d1gq8a_         160 FGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSS  239 (319)
T ss_dssp             EESCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCE
T ss_pred             ecCceeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEecc
Confidence            999999999999999874  55789999999999999999999999998863        57999999999999999999


Q ss_pred             CCCccCCCCcCCCCCCCCcceeEEEEEcccCCCCCCCCceeec---ccCCHHHHcCCcccccccCCCCCCCCC
Q 039631          297 MGNVVNRAGWSDNFRPERRQTVFYGEYKCSGPGASPAERVEYT---KQLSDAEARPFLVLDYVQGNQWILPPP  366 (369)
Q Consensus       297 ~~~~I~p~GW~~w~~~~~~~t~~f~EY~n~GpGa~~~~Rv~w~---~~lt~~ea~~ft~~~fi~g~~Wl~~~p  366 (369)
                      |+++|.|+||.+|+.+...++++|+||+|+|||+++++||+|+   ++|+++||++|+..+||+|+.|||...
T Consensus       240 l~~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~  312 (319)
T d1gq8a_         240 ITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATT  312 (319)
T ss_dssp             ECTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGT
T ss_pred             cccccccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCC
Confidence            9999999999999998889999999999999999999999997   479999999999999999999998753
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure