Query 039633
Match_columns 31
No_of_seqs 103 out of 155
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 20:04:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039633.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039633hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u9d_A Hypothetical protein VC 53.3 2.8 9.7E-05 22.9 0.0 11 17-27 112-122 (122)
2 1gff_3 Bacteriophage G4 capsid 37.6 14 0.00048 15.9 1.0 12 17-28 15-26 (26)
3 2o9u_X Monellin chain B and mo 34.3 4.4 0.00015 21.7 -1.1 22 7-30 32-64 (97)
4 2gpy_A O-methyltransferase; st 33.1 9.1 0.00031 20.5 0.0 14 17-30 218-231 (233)
5 3fwu_A Macrophage migration in 30.9 8.6 0.00029 20.4 -0.3 20 2-25 112-131 (133)
6 1bii_B Beta-2 microglobulin, M 30.3 29 0.001 17.7 1.7 15 10-26 51-65 (119)
7 2d74_B Translation initiation 27.6 7.5 0.00026 21.9 -1.0 24 5-28 62-90 (148)
8 3o8s_A Nudix hydrolase, ADP-ri 27.3 13 0.00045 20.1 0.0 25 1-29 2-26 (206)
9 3l9a_X Uncharacterized protein 25.4 31 0.0011 18.2 1.3 14 18-31 17-30 (88)
10 1rh5_C Secbeta; protein transl 23.7 19 0.00065 17.2 0.2 13 1-13 10-22 (53)
11 1m06_J J protein, small core p 23.5 14 0.00049 15.8 -0.2 11 18-28 15-25 (26)
12 3ehc_A Snoal-like polyketide c 23.4 39 0.0013 16.3 1.3 15 12-26 68-82 (128)
13 3f9s_A Putative polyketide cyc 21.4 49 0.0017 16.2 1.5 13 15-27 83-95 (146)
14 4a04_A T-box transcription fac 21.3 30 0.001 20.0 0.7 11 7-17 9-19 (203)
No 1
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=53.32 E-value=2.8 Score=22.92 Aligned_cols=11 Identities=36% Similarity=0.779 Sum_probs=9.3
Q ss_pred EEEeeEcCeec
Q 039633 17 IDHWLLNGMHF 27 (31)
Q Consensus 17 ~~~W~~nG~HY 27 (31)
.++|-.||+||
T Consensus 112 ~~~y~~gG~~~ 122 (122)
T 1u9d_A 112 RTAYYLDGQHF 122 (122)
T ss_dssp GGGCEETTEEC
T ss_pred HHHeeeCCEEC
Confidence 36899999998
No 2
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=37.63 E-value=14 Score=15.87 Aligned_cols=12 Identities=17% Similarity=0.697 Sum_probs=9.3
Q ss_pred EEEeeEcCeecc
Q 039633 17 IDHWLLNGMHFA 28 (31)
Q Consensus 17 ~~~W~~nG~HY~ 28 (31)
.+-|.|.|+.|.
T Consensus 15 arlwyvggtq~~ 26 (26)
T 1gff_3 15 ARLWYVGGTQYX 26 (26)
T ss_pred eEEEEecceecC
Confidence 356999999873
No 3
>2o9u_X Monellin chain B and monellin chain A; alternative conformations, 3-10 polyproline II helix, plant protein; 1.15A {Dioscoreophyllum cumminsii} SCOP: d.17.1.1 PDB: 3pxm_A 1m9g_A 3pyj_A 1fa3_A 1iv7_A 3q2p_A 1iv9_A 1mnl_A 1mol_A 1fuw_A 4mon_B 3mon_B 1krl_B 4mon_A 1krl_A 3mon_A 2q33_B* 2q33_A*
Probab=34.26 E-value=4.4 Score=21.66 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=16.8
Q ss_pred hhhhcCceee-----------EEEeeEcCeecccc
Q 039633 7 PLYFQDDVSV-----------IDHWLLNGMHFANK 30 (31)
Q Consensus 7 ll~Fq~~l~v-----------~~~W~~nG~HY~rT 30 (31)
.|.|.+-++. +.| |+|+.|..|
T Consensus 32 ~L~f~~Vv~~~~~~~~~~~~~~~Q--VaG~nY~Lt 64 (97)
T 2o9u_X 32 RLTFNKVIRPCMKKTIYENEGFRE--IKGYEYQLY 64 (97)
T ss_dssp SCCEEEEEEEEEEEEEECSSSSCS--EEEEEEEEE
T ss_pred CcEEEEEEEcccccccccchhhee--eccEEEEEE
Confidence 3567777777 777 999999866
No 4
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=33.09 E-value=9.1 Score=20.46 Aligned_cols=14 Identities=7% Similarity=-0.313 Sum_probs=0.0
Q ss_pred EEEeeEcCeecccc
Q 039633 17 IDHWLLNGMHFANK 30 (31)
Q Consensus 17 ~~~W~~nG~HY~rT 30 (31)
++.|.-||+||++|
T Consensus 218 ~~~~~~~~~~~~~~ 231 (233)
T 2gpy_A 218 GDTDDEKAEGHHHH 231 (233)
T ss_dssp --------------
T ss_pred CCchhhhhcccccc
Confidence 45688899999987
No 5
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=30.87 E-value=8.6 Score=20.38 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=15.1
Q ss_pred CCCChhhhhcCceeeEEEeeEcCe
Q 039633 2 PSANLPLYFQDDVSVIDHWLLNGM 25 (31)
Q Consensus 2 PS~dlll~Fq~~l~v~~~W~~nG~ 25 (31)
|.++....|.|- ..|-|||+
T Consensus 112 ~~~riyI~f~d~----~~wG~nG~ 131 (133)
T 3fwu_A 112 VADRIFVLYFSP----LHCGWNGT 131 (133)
T ss_dssp CGGGEEEEEECC----SCCEETTE
T ss_pred ChhhEEEEEEEH----HHEeeCcE
Confidence 556666677766 89999997
No 6
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide), major histocompatibility complex class I DD, transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP: b.1.1.2
Probab=30.32 E-value=29 Score=17.71 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=10.2
Q ss_pred hcCceeeEEEeeEcCee
Q 039633 10 FQDDVSVIDHWLLNGMH 26 (31)
Q Consensus 10 Fq~~l~v~~~W~~nG~H 26 (31)
|..++.| .|.-||+=
T Consensus 51 yP~~I~v--~W~knG~~ 65 (119)
T 1bii_B 51 HPPHIEI--QMLKNGKK 65 (119)
T ss_dssp BSSCCEE--EEEETTEE
T ss_pred cCCCeEE--EEEECCEE
Confidence 4555555 89999863
No 7
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=27.56 E-value=7.5 Score=21.91 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=15.8
Q ss_pred ChhhhhcCceee-----EEEeeEcCeecc
Q 039633 5 NLPLYFQDDVSV-----IDHWLLNGMHFA 28 (31)
Q Consensus 5 dlll~Fq~~l~v-----~~~W~~nG~HY~ 28 (31)
.+..||+..|.. .+++.+||.|=+
T Consensus 62 hv~ky~~~ELGt~g~id~~rlii~G~~~~ 90 (148)
T 2d74_B 62 HLLKFLLREIATAGTLEGRRVVLQGRFTP 90 (148)
T ss_dssp HHHHHHHHHSCCCEEEETTEEEESSCCCH
T ss_pred HHHHHHHHHhCCceeecCCEEEEEeeeCH
Confidence 355666644433 578999999843
No 8
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}
Probab=27.27 E-value=13 Score=20.12 Aligned_cols=25 Identities=8% Similarity=0.170 Sum_probs=0.0
Q ss_pred CCCCChhhhhcCceeeEEEeeEcCeeccc
Q 039633 1 MPSANLPLYFQDDVSVIDHWLLNGMHFAN 29 (31)
Q Consensus 1 MPS~dlll~Fq~~l~v~~~W~~nG~HY~r 29 (31)
|++...+..-++--+|-+ .|.+|++
T Consensus 2 ~~~~~~~~~~~~l~~~a~----~gl~~~~ 26 (206)
T 3o8s_A 2 MSQDKWLEWAVRLQALAQ----TGLAYGK 26 (206)
T ss_dssp -----------------------------
T ss_pred CchHHHHHHHHHHHHHHH----hhhccCC
Confidence 666666655555555555 6777764
No 9
>3l9a_X Uncharacterized protein; phage-associated, hypothetical protein, CHAP domain, structural genomics, PSI-2, protein structure initiative; HET: MSE GOL; 1.30A {Streptococcus mutans}
Probab=25.38 E-value=31 Score=18.18 Aligned_cols=14 Identities=21% Similarity=0.641 Sum_probs=11.4
Q ss_pred EEeeEcCeeccccC
Q 039633 18 DHWLLNGMHFANKV 31 (31)
Q Consensus 18 ~~W~~nG~HY~rTa 31 (31)
.....-|.||++.|
T Consensus 17 seytfagvhyakga 30 (88)
T 3l9a_X 17 SEYTFAGVHYAKGA 30 (88)
T ss_dssp SCEEETTEEECTTC
T ss_pred ceeEEEeeeeccce
Confidence 46788999999864
No 10
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=23.67 E-value=19 Score=17.25 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=1.5
Q ss_pred CCCCChhhhhcCc
Q 039633 1 MPSANLPLYFQDD 13 (31)
Q Consensus 1 MPS~dlll~Fq~~ 13 (31)
|.|+.|+.||-|+
T Consensus 10 ~ssaGLvryy~ee 22 (53)
T 1rh5_C 10 ATSAGLIRYMDET 22 (53)
T ss_dssp -----------CC
T ss_pred cccccchhhhhcc
Confidence 4578899999886
No 11
>1m06_J J protein, small core protein; bacteriophage, virion; HET: 3DR; 3.50A {Enterobacteria phage ALPHA3}
Probab=23.48 E-value=14 Score=15.84 Aligned_cols=11 Identities=27% Similarity=0.818 Sum_probs=8.0
Q ss_pred EEeeEcCeecc
Q 039633 18 DHWLLNGMHFA 28 (31)
Q Consensus 18 ~~W~~nG~HY~ 28 (31)
+-|.|.|+.|.
T Consensus 15 rlwyvggtq~~ 25 (26)
T 1m06_J 15 RLWYVGGSQFX 25 (26)
T ss_dssp CCCCSSSCCC-
T ss_pred EEEEEcceEec
Confidence 35999998874
No 12
>3ehc_A Snoal-like polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.12A {Agrobacterium tumefaciens str}
Probab=23.40 E-value=39 Score=16.30 Aligned_cols=15 Identities=7% Similarity=0.164 Sum_probs=11.1
Q ss_pred CceeeEEEeeEcCee
Q 039633 12 DDVSVIDHWLLNGMH 26 (31)
Q Consensus 12 ~~l~v~~~W~~nG~H 26 (31)
+.=.+.-+|.+.|+|
T Consensus 68 ~gd~v~~~~~~~gt~ 82 (128)
T 3ehc_A 68 DATRLAARLFFDCTP 82 (128)
T ss_dssp CSSEEEEEEEEEECC
T ss_pred ECCEEEEEEEEEEEE
Confidence 344566789999988
No 13
>3f9s_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.76A {Acidithiobacillus ferrooxidans atcc 23}
Probab=21.44 E-value=49 Score=16.22 Aligned_cols=13 Identities=31% Similarity=0.639 Sum_probs=10.1
Q ss_pred eeEEEeeEcCeec
Q 039633 15 SVIDHWLLNGMHF 27 (31)
Q Consensus 15 ~v~~~W~~nG~HY 27 (31)
.+.-+|++.|+|-
T Consensus 83 ~v~~~~~~~gt~~ 95 (146)
T 3f9s_A 83 AVVMTWLWTATHK 95 (146)
T ss_dssp EEEEEEEEEEECC
T ss_pred EEEEEEEEEEEec
Confidence 4667899998884
No 14
>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens}
Probab=21.30 E-value=30 Score=19.98 Aligned_cols=11 Identities=64% Similarity=0.845 Sum_probs=3.5
Q ss_pred hhhhcCceeeE
Q 039633 7 PLYFQDDVSVI 17 (31)
Q Consensus 7 ll~Fq~~l~v~ 17 (31)
-+|||+.++|.
T Consensus 9 ~~~~~~~i~V~ 19 (203)
T 4a04_A 9 NLYFQGGVSVQ 19 (203)
T ss_dssp ------CCEEE
T ss_pred ceeccCCcEEE
Confidence 47899987764
Done!