Query 039633
Match_columns 31
No_of_seqs 103 out of 155
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 20:05:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039633.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039633hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kpia_ c.66.1.18 (A:) CmaA2 { 95.9 0.00027 2E-08 40.9 -1.6 31 1-31 209-240 (291)
2 d2fk8a1 c.66.1.18 (A:22-301) M 95.0 0.0002 1.5E-08 40.9 -4.1 31 1-31 193-224 (280)
3 d1kpga_ c.66.1.18 (A:) CmaA1 { 94.8 0.0019 1.4E-07 37.1 -0.4 30 1-31 203-234 (285)
4 d1igtb4 b.1.1.2 (B:363-474) Im 47.9 5.1 0.00037 18.6 1.7 15 9-25 31-45 (102)
5 d1c5cl2 b.1.1.2 (L:108-214) Im 41.1 7.4 0.00054 18.1 1.7 15 9-25 32-46 (107)
6 d1hdma1 b.1.1.2 (A:94-196) Cla 37.0 9.8 0.00071 18.1 1.8 15 9-25 30-44 (103)
7 d1hxma2 b.1.1.2 (A:121-206) T- 33.9 8.9 0.00065 17.7 1.3 15 9-25 25-39 (86)
8 d2dj7a2 g.39.1.3 (A:8-43) Acti 31.4 3.9 0.00028 17.8 -0.3 13 10-22 21-33 (36)
9 d1r69a_ a.35.1.2 (A:) 434 C1 r 29.9 0.76 5.5E-05 20.1 -3.0 24 2-25 40-63 (63)
10 d1fp5a2 b.1.1.2 (A:439-543) Im 29.2 15 0.0011 17.0 1.7 14 10-25 32-45 (105)
11 d1i1ca1 b.1.1.2 (A:239-341) Im 28.1 14 0.00099 17.0 1.4 16 10-25 29-44 (103)
12 d2g3ra1 b.34.9.1 (A:1485-1537) 27.9 8.3 0.00061 17.7 0.6 16 13-28 4-19 (53)
13 d1iray3 b.1.1.4 (Y:205-311) Ty 25.3 16 0.0012 16.0 1.4 10 18-27 34-43 (107)
14 d1u9da_ d.80.1.5 (A:) Hypothet 23.0 11 0.00083 19.5 0.6 7 21-27 116-122 (122)
15 d1nxma_ b.82.1.1 (A:) dTDP-4-d 20.9 9.9 0.00072 20.3 0.1 19 11-29 58-76 (194)
16 d1k82a3 g.39.1.8 (A:225-268) D 20.1 8.5 0.00062 16.4 -0.3 9 8-16 3-11 (44)
No 1
>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=95.89 E-value=0.00027 Score=40.87 Aligned_cols=31 Identities=10% Similarity=0.361 Sum_probs=23.9
Q ss_pred CCCCChhhhhcCceee-EEEeeEcCeeccccC
Q 039633 1 MPSANLPLYFQDDVSV-IDHWLLNGMHFANKV 31 (31)
Q Consensus 1 MPS~dlll~Fq~~l~v-~~~W~~nG~HY~rTa 31 (31)
|||.+.+..+.++..+ +.+|...|.||+||+
T Consensus 209 lps~~~~~~~~e~~gl~v~~~~~~~~hYa~TL 240 (291)
T d1kpia_ 209 LPRISQVDYYSSNAGWKVERYHRIGANYVPTL 240 (291)
T ss_dssp CCCHHHHHHHHHHHTCEEEEEEECGGGHHHHH
T ss_pred CCCHHHHHhhhcccccccceeeeccccHHHHH
Confidence 6888888888876432 366677799999994
No 2
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=95.04 E-value=0.0002 Score=40.88 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=21.0
Q ss_pred CCCCChhhhhcCceeeEEEeeEc-CeeccccC
Q 039633 1 MPSANLPLYFQDDVSVIDHWLLN-GMHFANKV 31 (31)
Q Consensus 1 MPS~dlll~Fq~~l~v~~~W~~n-G~HY~rTa 31 (31)
|||.+.+..+.+...++-.+..| |.||+||+
T Consensus 193 lPS~~~l~~~~e~aGf~v~~~~~~~~hYa~TL 224 (280)
T d2fk8a1 193 LPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTL 224 (280)
T ss_dssp CCCHHHHHHHHHHTTCBCCCCEECHHHHHHHH
T ss_pred ccchHhhhhhHHhhccccceeeecccCHHHHH
Confidence 68888787776554444344444 89999994
No 3
>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=94.79 E-value=0.0019 Score=37.07 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=22.0
Q ss_pred CCCCChhhhh--cCceeeEEEeeEcCeeccccC
Q 039633 1 MPSANLPLYF--QDDVSVIDHWLLNGMHFANKV 31 (31)
Q Consensus 1 MPS~dlll~F--q~~l~v~~~W~~nG~HY~rTa 31 (31)
|||.+.+..+ +..|.|++.+-+ |.||+||.
T Consensus 203 lPsl~~~~~~~e~agf~v~~~~~~-~~hYarTl 234 (285)
T d1kpga_ 203 LPSIPMVQECASANGFTVTRVQSL-QPHYAKTL 234 (285)
T ss_dssp CCCHHHHHHHHHTTTCEEEEEEEC-HHHHHHHH
T ss_pred CCChhhHHHHHHHhchhhcccccc-hhhHHHHH
Confidence 6777776655 455888776665 89999994
No 4
>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}
Probab=47.88 E-value=5.1 Score=18.58 Aligned_cols=15 Identities=33% Similarity=0.840 Sum_probs=10.2
Q ss_pred hhcCceeeEEEeeEcCe
Q 039633 9 YFQDDVSVIDHWLLNGM 25 (31)
Q Consensus 9 ~Fq~~l~v~~~W~~nG~ 25 (31)
+|.+++.| +|..||.
T Consensus 31 f~P~~i~v--~W~~~g~ 45 (102)
T d1igtb4 31 FMPEDIYV--EWTNNGK 45 (102)
T ss_dssp EBSSCCEE--EEEETTE
T ss_pred eECCCcEE--EEEECCE
Confidence 45666555 5999985
No 5
>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.15 E-value=7.4 Score=18.11 Aligned_cols=15 Identities=13% Similarity=0.733 Sum_probs=10.1
Q ss_pred hhcCceeeEEEeeEcCe
Q 039633 9 YFQDDVSVIDHWLLNGM 25 (31)
Q Consensus 9 ~Fq~~l~v~~~W~~nG~ 25 (31)
+|.+++.| .|..||.
T Consensus 32 f~P~~i~v--~W~~ng~ 46 (107)
T d1c5cl2 32 FYPREAKV--QWKVDNA 46 (107)
T ss_dssp EBSSCCEE--EEEETTE
T ss_pred eeCCCCEE--EEEECCE
Confidence 45666554 5999986
No 6
>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}
Probab=37.05 E-value=9.8 Score=18.11 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=10.3
Q ss_pred hhcCceeeEEEeeEcCe
Q 039633 9 YFQDDVSVIDHWLLNGM 25 (31)
Q Consensus 9 ~Fq~~l~v~~~W~~nG~ 25 (31)
||.+++.| .|..||.
T Consensus 30 F~P~~i~V--~W~~ng~ 44 (103)
T d1hdma1 30 LFPPMLTV--NWHDHSV 44 (103)
T ss_dssp EBSSCEEE--EEEETTE
T ss_pred EECCCCEE--EEEECCe
Confidence 45666655 4999986
No 7
>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}
Probab=33.92 E-value=8.9 Score=17.75 Aligned_cols=15 Identities=7% Similarity=0.352 Sum_probs=10.2
Q ss_pred hhcCceeeEEEeeEcCe
Q 039633 9 YFQDDVSVIDHWLLNGM 25 (31)
Q Consensus 9 ~Fq~~l~v~~~W~~nG~ 25 (31)
||.+++.|. |..||.
T Consensus 25 F~P~~i~v~--W~~~g~ 39 (86)
T d1hxma2 25 FYPKDIRIN--LVSSKK 39 (86)
T ss_dssp CBSSCCEEE--EECSSE
T ss_pred EECCCCEEE--EEECCE
Confidence 466666664 888885
No 8
>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.40 E-value=3.9 Score=17.76 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=10.2
Q ss_pred hcCceeeEEEeeE
Q 039633 10 FQDDVSVIDHWLL 22 (31)
Q Consensus 10 Fq~~l~v~~~W~~ 22 (31)
=|.-+.+++||.+
T Consensus 21 gQaL~ALdkqWH~ 33 (36)
T d2dj7a2 21 GQSLLALDKQWHV 33 (36)
T ss_dssp SCCEEETTEEECT
T ss_pred Cceeeeeecceee
Confidence 3667889999975
No 9
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}
Probab=29.90 E-value=0.76 Score=20.10 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=17.1
Q ss_pred CCCChhhhhcCceeeEEEeeEcCe
Q 039633 2 PSANLPLYFQDDVSVIDHWLLNGM 25 (31)
Q Consensus 2 PS~dlll~Fq~~l~v~~~W~~nG~ 25 (31)
|+.+.+..+.+-|.+.-.|.++|+
T Consensus 40 ~~~~~l~~ia~~l~v~~~~l~~Gt 63 (63)
T d1r69a_ 40 KRPRFLPELASALGVSVDWLLNGT 63 (63)
T ss_dssp SSCTTHHHHHHHTTCCHHHHHHCC
T ss_pred cCHHHHHHHHHHHCcCHHHHhhCc
Confidence 566677777777777777777764
No 10
>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.23 E-value=15 Score=17.03 Aligned_cols=14 Identities=43% Similarity=0.942 Sum_probs=9.0
Q ss_pred hcCceeeEEEeeEcCe
Q 039633 10 FQDDVSVIDHWLLNGM 25 (31)
Q Consensus 10 Fq~~l~v~~~W~~nG~ 25 (31)
|.+++.| .|..||+
T Consensus 32 ~P~~i~v--~W~~~g~ 45 (105)
T d1fp5a2 32 MPEDISV--QWLHNEV 45 (105)
T ss_dssp BSSCCEE--EEEETTE
T ss_pred eCCCcEE--EEEECCE
Confidence 4455544 5888886
No 11
>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=28.09 E-value=14 Score=17.03 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=11.8
Q ss_pred hcCceeeEEEeeEcCe
Q 039633 10 FQDDVSVIDHWLLNGM 25 (31)
Q Consensus 10 Fq~~l~v~~~W~~nG~ 25 (31)
+.++..|.=.|..||.
T Consensus 29 ~p~~~~v~v~W~~~g~ 44 (103)
T d1i1ca1 29 SQNDPEVRFSWFIDDV 44 (103)
T ss_dssp CTTCCCCEEEEEESSC
T ss_pred ECCCCCEEEEEEECCc
Confidence 4455667778999986
No 12
>d2g3ra1 b.34.9.1 (A:1485-1537) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.91 E-value=8.3 Score=17.72 Aligned_cols=16 Identities=25% Similarity=0.725 Sum_probs=13.7
Q ss_pred ceeeEEEeeEcCeecc
Q 039633 13 DVSVIDHWLLNGMHFA 28 (31)
Q Consensus 13 ~l~v~~~W~~nG~HY~ 28 (31)
.|+|...|--||--|+
T Consensus 4 glrvvakwssn~yfys 19 (53)
T d2g3ra1 4 GLRVVAKWSSNGYFYS 19 (53)
T ss_dssp TCEEEEECTTTCCEEE
T ss_pred eEEEEEEeecCCEEEe
Confidence 4789999999998886
No 13
>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.25 E-value=16 Score=16.04 Aligned_cols=10 Identities=30% Similarity=0.564 Sum_probs=7.8
Q ss_pred EEeeEcCeec
Q 039633 18 DHWLLNGMHF 27 (31)
Q Consensus 18 ~~W~~nG~HY 27 (31)
=.|.+||+.-
T Consensus 34 i~W~~~g~~i 43 (107)
T d1iray3 34 AYWKWNGSVI 43 (107)
T ss_dssp EEEEETTEEC
T ss_pred EEEEECCccc
Confidence 3799999864
No 14
>d1u9da_ d.80.1.5 (A:) Hypothetical protein VC0714 {Vibrio cholerae [TaxId: 666]}
Probab=22.97 E-value=11 Score=19.48 Aligned_cols=7 Identities=57% Similarity=1.179 Sum_probs=4.4
Q ss_pred eEcCeec
Q 039633 21 LLNGMHF 27 (31)
Q Consensus 21 ~~nG~HY 27 (31)
.-||+||
T Consensus 116 Y~nG~Hf 122 (122)
T d1u9da_ 116 YLDGQHF 122 (122)
T ss_dssp EETTEEC
T ss_pred ecCCccC
Confidence 4467776
No 15
>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]}
Probab=20.90 E-value=9.9 Score=20.29 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=16.1
Q ss_pred cCceeeEEEeeEcCeeccc
Q 039633 11 QDDVSVIDHWLLNGMHFAN 29 (31)
Q Consensus 11 q~~l~v~~~W~~nG~HY~r 29 (31)
|+.++.-..-.+-|.||+.
T Consensus 58 Q~n~S~S~kgvlRGlH~q~ 76 (194)
T d1nxma_ 58 QNNVSFSRKNVLRGLHAEP 76 (194)
T ss_dssp EEEEEEEETTBEEEEEECS
T ss_pred eeeEeeeeeeEEEEEEecc
Confidence 7778888888999999984
No 16
>d1k82a3 g.39.1.8 (A:225-268) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]}
Probab=20.13 E-value=8.5 Score=16.41 Aligned_cols=9 Identities=33% Similarity=0.711 Sum_probs=6.0
Q ss_pred hhhcCceee
Q 039633 8 LYFQDDVSV 16 (31)
Q Consensus 8 l~Fq~~l~v 16 (31)
-+||+.|.|
T Consensus 3 G~Fq~~~~V 11 (44)
T d1k82a3 3 GYFAQELQV 11 (44)
T ss_dssp CSCGGGCSS
T ss_pred CcCcceeEE
Confidence 367777765
Done!