BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039634
(127 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GWR3|QKIL5_ARATH KH domain-containing protein At1g09660 OS=Arabidopsis thaliana
GN=At1g09660 PE=2 SV=1
Length = 298
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/121 (60%), Positives = 90/121 (74%), Gaps = 5/121 (4%)
Query: 4 EVDLLIKFKVSINGCPYTYTSLSIKVE-IKDKPGYEHLNEPLHMLVEAEFPEVIINSCLD 62
V+L +V I G ++K E +K KPGYEHL EPLH+L+EAE PE IINS L+
Sbjct: 177 RVELATHCRVFIRG--RGSVKDTVKEEKLKGKPGYEHLCEPLHVLIEAELPEDIINSRLE 234
Query: 63 HAVAILENLLKPVDESLDHYKKQQLRELAILNGTLREE--SPSMSPSMSPSMSPFNNAGM 120
HAV LE+LLKP+DES+DHYK++QL+ELA LNGTLREE SPS+SP +SPSMSPFN+
Sbjct: 235 HAVHFLESLLKPMDESMDHYKREQLKELAALNGTLREESPSPSLSPCLSPSMSPFNSKRA 294
Query: 121 K 121
K
Sbjct: 295 K 295
>sp|Q75GR5|SPIN1_ORYSJ KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica
GN=SPIN1 PE=1 SV=1
Length = 281
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 59/98 (60%), Positives = 77/98 (78%), Gaps = 5/98 (5%)
Query: 30 EIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRE 89
+++ KPGYEHL++PLH+L+EAEFP II++ L HA ++E LLKPVDES D YK+QQLRE
Sbjct: 189 KLRGKPGYEHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDESQDFYKRQQLRE 248
Query: 90 LAILNGTLREESPSMSPSMSPSMSPFNNAGMKCAETGR 127
LA+LN TLRE+SP S+SPF+N GMK A+TG+
Sbjct: 249 LAMLNSTLREDSPHPG-----SVSPFSNGGMKRAKTGQ 281
>sp|Q9FKT4|QKIL2_ARATH KH domain-containing protein At5g56140 OS=Arabidopsis thaliana
GN=At5g56140 PE=2 SV=1
Length = 315
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 59/95 (62%), Positives = 75/95 (78%), Gaps = 4/95 (4%)
Query: 31 IKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLREL 90
++ KPGYEHLNEPLH+LVEAE P I+++ L A IL++LL P++E+ D YKKQQLREL
Sbjct: 222 MRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQQLREL 281
Query: 91 AILNGTLREESPSMSPSMSPSMSPFNNAGMKCAET 125
A+LNGTLREE SP MS S+SP+N+ GMK A+T
Sbjct: 282 ALLNGTLREEG---SP-MSGSVSPYNSLGMKRAKT 312
>sp|Q0WLR1|QKIL1_ARATH KH domain-containing protein At4g26480 OS=Arabidopsis thaliana
GN=At4g26480 PE=2 SV=1
Length = 308
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/95 (62%), Positives = 75/95 (78%), Gaps = 4/95 (4%)
Query: 31 IKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLREL 90
++ KPGYEHLNEPLH+LVEAE P I+++ L A IL++LL PV+E+ D YKKQQLREL
Sbjct: 216 MRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDFYKKQQLREL 275
Query: 91 AILNGTLREESPSMSPSMSPSMSPFNNAGMKCAET 125
A+LNG+LREE SP MS S+SP+N+ GMK A+T
Sbjct: 276 ALLNGSLREEG---SP-MSGSISPYNSLGMKRAKT 306
>sp|Q8GYR4|QKIL4_ARATH KH domain-containing protein At3g08620 OS=Arabidopsis thaliana
GN=At3g08620 PE=2 SV=1
Length = 283
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 70/98 (71%), Gaps = 4/98 (4%)
Query: 30 EIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRE 89
++K KPGYEHLNE LH+L+EA+ P I++ L A I+E L+KPVDES D+ K+QQLRE
Sbjct: 190 KLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDESQDYIKRQQLRE 249
Query: 90 LAILNGTLREESPSMSPSMSPSMSPFNNAGMKCAETGR 127
LA+LN LRE SP S S+SPFN+ MK +TGR
Sbjct: 250 LALLNSNLREN----SPGPSGSVSPFNSNAMKRPKTGR 283
>sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610 OS=Arabidopsis thaliana
GN=At2g38610 PE=1 SV=1
Length = 286
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 67/93 (72%), Gaps = 3/93 (3%)
Query: 30 EIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRE 89
+++ +PGYEHLNE LH+L+EA+ P I+ L A I+E LLKPVDES D K+QQLRE
Sbjct: 191 KLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDESQDFIKRQQLRE 250
Query: 90 LAILNG-TLREESPSMSPSMSPSMSPFNNAGMK 121
LA+LN LREESP PS S+SPFN++G +
Sbjct: 251 LALLNSNNLREESP--GPSGGGSVSPFNSSGKR 281
>sp|Q6IRN2|QKIB_XENLA Protein quaking-B OS=Xenopus laevis GN=qki-b PE=1 SV=1
Length = 342
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 32 KDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELA 91
+ KP +EHLNE LH+L+ E + L AV ++ LL P E D KK QL ELA
Sbjct: 140 RGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELA 199
Query: 92 ILNGTLRE---ESPSMSPSMS 109
ILNGT R+ +SP+++ S++
Sbjct: 200 ILNGTYRDANLKSPALAFSLA 220
>sp|Q32NN2|QKIA_XENLA Protein quaking-A OS=Xenopus laevis GN=qki-a PE=1 SV=2
Length = 341
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 32 KDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELA 91
+ KP +EHLNE LH+L+ E + L AV ++ LL P E D KK QL ELA
Sbjct: 140 RGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELA 199
Query: 92 ILNGTLRE---ESPSMSPSMS 109
ILNGT R+ +SP+++ S++
Sbjct: 200 ILNGTYRDANLKSPALAFSLA 220
>sp|Q6P104|QKIB_DANRE Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1
Length = 319
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 32 KDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELA 91
+ KP +EHLNE LH+L+ E + L AV ++ LL P E D KK QL ELA
Sbjct: 139 RGKPNWEHLNEDLHVLITVEDSQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELA 198
Query: 92 ILNGTLRE---ESPSMSPSMS 109
ILNGT R+ +SP+++ S++
Sbjct: 199 ILNGTYRDANIKSPALAFSLA 219
>sp|Q5W9D5|QKI_PIG Protein quaking OS=Sus scrofa GN=QKI PE=2 SV=1
Length = 341
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 32 KDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELA 91
+ KP +EHLNE LH+L+ E + L AV ++ LL P E D KK QL ELA
Sbjct: 139 RGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELA 198
Query: 92 ILNGTLRE---ESPSMSPSMS 109
ILNGT R+ +SP+++ S++
Sbjct: 199 ILNGTYRDANIKSPALAFSLA 219
>sp|Q9QYS9|QKI_MOUSE Protein quaking OS=Mus musculus GN=Qki PE=1 SV=1
Length = 341
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 32 KDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELA 91
+ KP +EHLNE LH+L+ E + L AV ++ LL P E D KK QL ELA
Sbjct: 139 RGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELA 198
Query: 92 ILNGTLRE---ESPSMSPSMS 109
ILNGT R+ +SP+++ S++
Sbjct: 199 ILNGTYRDANIKSPALAFSLA 219
>sp|Q96PU8|QKI_HUMAN Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1
Length = 341
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 32 KDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELA 91
+ KP +EHLNE LH+L+ E + L AV ++ LL P E D KK QL ELA
Sbjct: 139 RGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELA 198
Query: 92 ILNGTLRE---ESPSMSPSMS 109
ILNGT R+ +SP+++ S++
Sbjct: 199 ILNGTYRDANIKSPALAFSLA 219
>sp|Q5W9D6|QKI_HORSE Protein quaking OS=Equus caballus GN=QKI PE=2 SV=1
Length = 341
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 32 KDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELA 91
+ KP +EHLNE LH+L+ E + L AV ++ LL P E D KK QL ELA
Sbjct: 139 RGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELA 198
Query: 92 ILNGTLRE---ESPSMSPSMS 109
ILNGT R+ +SP+++ S++
Sbjct: 199 ILNGTYRDANIKSPALAFSLA 219
>sp|Q7JJZ8|QKI_FELCA Protein quaking OS=Felis catus GN=QKI PE=2 SV=1
Length = 341
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 32 KDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELA 91
+ KP +EHLNE LH+L+ E + L AV ++ LL P E D KK QL ELA
Sbjct: 139 RGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELA 198
Query: 92 ILNGTLRE---ESPSMSPSMS 109
ILNGT R+ +SP+++ S++
Sbjct: 199 ILNGTYRDANIKSPALAFSLA 219
>sp|Q9GMY1|QKI_CANFA Protein quaking OS=Canis familiaris GN=QKI PE=2 SV=1
Length = 341
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 32 KDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELA 91
+ KP +EHLNE LH+L+ E + L AV ++ LL P E D KK QL ELA
Sbjct: 139 RGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELA 198
Query: 92 ILNGTLRE---ESPSMSPSMS 109
ILNGT R+ +SP+++ S++
Sbjct: 199 ILNGTYRDANIKSPALAFSLA 219
>sp|Q5W9D7|QKI_BOVIN Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1
Length = 341
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 32 KDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELA 91
+ KP +EHLNE LH+L+ E + L AV ++ LL P E D KK QL ELA
Sbjct: 139 RGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELA 198
Query: 92 ILNGTLRE---ESPSMSPSMS 109
ILNGT R+ +SP+++ S++
Sbjct: 199 ILNGTYRDANIKSPALAFSLA 219
>sp|Q91XU1|QKI_RAT Protein quaking OS=Rattus norvegicus GN=Qki PE=1 SV=2
Length = 341
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 32 KDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELA 91
+ KP +EHLNE LH+L+ E + L AV ++ LL P E D KK QL ELA
Sbjct: 139 RGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELA 198
Query: 92 ILNGTLRE---ESPSMSPSMS 109
ILNGT R+ +SP+++ S++
Sbjct: 199 ILNGTYRDANIKSPALAFSLA 219
>sp|Q9YH18|QKI_CHICK Protein quaking OS=Gallus gallus GN=QKI PE=2 SV=2
Length = 340
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 32 KDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELA 91
+ KP +EHLNE LH+L+ E + L AV ++ LL P E D KK QL ELA
Sbjct: 139 RGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLIPAAEGEDSLKKMQLMELA 198
Query: 92 ILNGTLRE---ESPSMSPSMS 109
ILNGT R+ +SP+++ S++
Sbjct: 199 ILNGTYRDANIKSPALAFSLA 219
>sp|Q6P0D0|QKIA_DANRE Protein quaking-A OS=Danio rerio GN=qkia PE=2 SV=2
Length = 341
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 32 KDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELA 91
+ KP +EHLNE LH+L+ E + + AV ++ LL P E D+ KK QL ELA
Sbjct: 139 RGKPNWEHLNEDLHVLITVEDTQTRAEIKMRRAVEEVKKLLVPAAEGEDNLKKMQLMELA 198
Query: 92 ILNGTLRE---ESPSMSPSM 108
ILNGT R+ ++P+++ S+
Sbjct: 199 ILNGTYRDTNIKAPTLAFSL 218
>sp|O01367|HOW_DROME Protein held out wings OS=Drosophila melanogaster GN=how PE=1 SV=1
Length = 405
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 43/70 (61%)
Query: 32 KDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELA 91
+ KP +EHL++ LH+L+ E E L AVA ++ LL P E D KK+QL ELA
Sbjct: 194 RGKPNWEHLSDDLHVLITVEDTENRATVKLAQAVAEVQKLLVPQAEGEDELKKRQLMELA 253
Query: 92 ILNGTLREES 101
I+NGT R+ +
Sbjct: 254 IINGTYRDTT 263
>sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppressor gld-1 OS=Caenorhabditis
elegans GN=gld-1 PE=1 SV=1
Length = 463
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%)
Query: 32 KDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELA 91
+ K +EHL + LH+LV+ E E ++ L A+ ++ LL P E D K++QL ELA
Sbjct: 262 RGKANWEHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQLMELA 321
Query: 92 ILNGTLR 98
I+NGT R
Sbjct: 322 IINGTYR 328
>sp|Q54BM5|BBP_DICDI Branchpoint-bridging protein OS=Dictyostelium discoideum GN=sf1
PE=3 SV=1
Length = 501
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 12 KVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENL 71
K++I G + K++ ++ N+ LH+L+ A+ LD A ++
Sbjct: 217 KIAIRGKGSSRDGKPTKLQFQE-------NDELHVLLTAD-----TVDQLDKAEVLVREF 264
Query: 72 LKPVDESLDHYKKQQLRELAILNGTLREESPSMSPSMSPSMSPFNNAGMKCAET 125
L PV+E + +K+QQLRELA +NGTLRE M + S +P + ++C ET
Sbjct: 265 LIPVEEGKNEHKRQQLRELAEMNGTLRERPAYMG---NRSWTPVDIKCVQCGET 315
>sp|Q15637|SF01_HUMAN Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4
Length = 639
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 28 KVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKP---VDESLDHYKK 84
KV KD +EPLH LV A E + AV + N+LK E + +K
Sbjct: 187 KVGRKDGQMLPGEDEPLHALVTANTMENV-----KKAVEQIRNILKQGIETPEDQNDLRK 241
Query: 85 QQLRELAILNGTLREE 100
QLRELA LNGTLRE+
Sbjct: 242 MQLRELARLNGTLRED 257
>sp|O74555|BBP_SCHPO Branchpoint-bridging protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=bpb1 PE=1 SV=1
Length = 587
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 8/65 (12%)
Query: 39 HLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLK---PVDESLDHYKKQQLRELAILNG 95
++ E LH LV A+ + I +HA+ +++N+++ V E + K+ QLR+LA LNG
Sbjct: 247 NMEEDLHCLVTADSEDKI-----NHAIKLIDNVIQTAASVPEGQNDLKRNQLRQLATLNG 301
Query: 96 TLREE 100
TLR++
Sbjct: 302 TLRDD 306
>sp|Q64213|SF01_MOUSE Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=6
Length = 653
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 28 KVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKP---VDESLDHYKK 84
KV KD +EPLH LV A E + AV + N+LK E + +K
Sbjct: 187 KVGRKDGQMLPGEDEPLHALVTANTMENV-----KKAVEQIRNILKQGIETPEDQNDLRK 241
Query: 85 QQLRELAILNGTLREE 100
QLRELA LNGTLRE+
Sbjct: 242 MQLRELARLNGTLRED 257
>sp|Q6FW77|BBP_CANGA Branchpoint-bridging protein OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=BBP
PE=3 SV=1
Length = 465
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 35 PGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELAILN 94
PG ++PLH L+ A+ E I N +++ + P E + K+ QLRELA LN
Sbjct: 192 PGAMDFSDPLHCLIIADNEEKIENGIKACRNIVIKAVTSP--EGQNELKRGQLRELAELN 249
Query: 95 GTLREES 101
GTLRE++
Sbjct: 250 GTLREDN 256
>sp|Q750X2|BBP_ASHGO Branchpoint-bridging protein OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=BBP PE=3 SV=2
Length = 507
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 36 GYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELAILNG 95
G ++NEPLH ++ A+ E I I++ + P E + K+ QLRELA+LNG
Sbjct: 208 GAMNMNEPLHCVISADTEEKIPLGINAVESIIIKAITSP--EGQNDLKRGQLRELAVLNG 265
Query: 96 TLREES 101
TLRE++
Sbjct: 266 TLREDN 271
>sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal transduction-associated
protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1
Length = 349
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 37 YEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELAILNGT 96
Y HL++ LH+L+E P S + HA+ ++ L P + D +++QLREL+ LNG+
Sbjct: 124 YAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181
>sp|Q9WU01|KHDR2_MOUSE KH domain-containing, RNA-binding, signal transduction-associated
protein 2 OS=Mus musculus GN=Khdrbs2 PE=1 SV=1
Length = 349
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 37 YEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELAILNGT 96
Y HL++ LH+L+E P S + HA+ ++ L P + D +++QLREL+ LNG+
Sbjct: 124 YAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181
>sp|Q5VWX1|KHDR2_HUMAN KH domain-containing, RNA-binding, signal transduction-associated
protein 2 OS=Homo sapiens GN=KHDRBS2 PE=1 SV=1
Length = 349
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 37 YEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELAILNGT 96
Y HL++ LH+L+E P S + HA+ ++ L P + D +++QLREL+ LNG+
Sbjct: 124 YAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181
>sp|Q08BJ2|KHDR2_DANRE KH domain-containing, RNA-binding, signal transduction-associated
protein 2 OS=Danio rerio GN=khdrbs2 PE=2 SV=1
Length = 346
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 37 YEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELAILNGT 96
Y HL+ LH+L+E P S + HA+ ++ L P + D +++QLREL+ LNG+
Sbjct: 124 YAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181
>sp|Q12186|BBP_YEAST Branchpoint-bridging protein OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MSL5 PE=1 SV=1
Length = 476
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 35 PGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENL-LKPVD--ESLDHYKKQQLRELA 91
PG + +PLH L+ A+ + I + + +N+ +K V E + K+ QLRELA
Sbjct: 206 PGAMNFEDPLHCLIIADSEDKI-----QKGIKVCQNIVIKAVTSPEGQNDLKRGQLRELA 260
Query: 92 ILNGTLREES 101
LNGTLRE++
Sbjct: 261 ELNGTLREDN 270
>sp|Q5AED9|BBP_CANAL Branchpoint-bridging protein OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=BBP PE=3 SV=1
Length = 455
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 40 LNEPLHMLVEAEFPEVIINSCLDHAVAILENLL-KPVDESLDHYKKQQLRELAILNGTLR 98
+ + LH+L+ A+ P + I+ + I++ L+ P + ++ K+ QL+ELA+LNGTLR
Sbjct: 213 IQDDLHVLITADSP-LKISKAVKLVNEIIDKLIFSP--QGMNFMKRDQLKELAVLNGTLR 269
Query: 99 EESP 102
E P
Sbjct: 270 ETKP 273
>sp|Q0VFL3|KHDR2_XENTR KH domain-containing, RNA-binding, signal transduction-associated
protein 2 OS=Xenopus tropicalis GN=khdrbs2 PE=2 SV=1
Length = 345
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 33 DKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELAI 92
D+ + HL++ LH+L+E P S + HA+ ++ L P + D +++QLREL+
Sbjct: 120 DEAKHAHLSDELHVLLEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSY 177
Query: 93 LNGT 96
LNG+
Sbjct: 178 LNGS 181
>sp|Q9JLP1|KHDR3_RAT KH domain-containing, RNA-binding, signal transduction-associated
protein 3 OS=Rattus norvegicus GN=Khdrbs3 PE=1 SV=1
Length = 346
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 37 YEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELAILNG 95
Y HLN+ LH+L+E P + + HA+ ++ L P + D ++ QL+EL LNG
Sbjct: 120 YFHLNDDLHVLIEVFAPPAEAYARMGHALEDIKKFLIP--DYNDEIRQAQLQELTYLNG 176
>sp|O75525|KHDR3_HUMAN KH domain-containing, RNA-binding, signal transduction-associated
protein 3 OS=Homo sapiens GN=KHDRBS3 PE=1 SV=1
Length = 346
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 37 YEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELAILNG 95
Y HLN+ LH+L+E P + + HA+ ++ L P + D ++ QL+EL LNG
Sbjct: 120 YFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNG 176
>sp|Q9R226|KHDR3_MOUSE KH domain-containing, RNA-binding, signal transduction-associated
protein 3 OS=Mus musculus GN=Khdrbs3 PE=1 SV=1
Length = 346
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 37 YEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELAILNG 95
Y HLN+ LH+L+E P + + HA+ ++ L P + D ++ QL+EL LNG
Sbjct: 120 YFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNG 176
>sp|Q8NIW7|BBP_NEUCR Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=bpb-1 PE=3 SV=1
Length = 607
Score = 37.0 bits (84), Expect = 0.038, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
Query: 42 EPLHMLVEAEFPEVIINSCLDHAVAILENLLK---PVDESLDHYKKQQLRELAILNGTLR 98
E LH L+ A+ E + + A ++ N+++ + E + K+ QLRELA LNGTLR
Sbjct: 260 EDLHCLIMADTEEKV-----NKAKKLIHNIIETAASIPEGQNELKRNQLRELAALNGTLR 314
Query: 99 EE 100
++
Sbjct: 315 DD 316
>sp|Q4P0H7|BBP_USTMA Branchpoint-bridging protein OS=Ustilago maydis (strain 521 / FGSC
9021) GN=BBP PE=3 SV=1
Length = 625
Score = 36.6 bits (83), Expect = 0.052, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 42 EPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELAILNGTLREE 100
E +H +V A+ E + C+ ++E + DH K+ QLRELA LNGTLR++
Sbjct: 309 EEMHCVVTAD-DEASVKKCIKLINQVIETAASTPEGENDH-KRNQLRELAALNGTLRDD 365
>sp|Q6BSP4|BBP_DEBHA Branchpoint-bridging protein OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=BBP PE=3 SV=2
Length = 518
Score = 36.2 bits (82), Expect = 0.057, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 41 NEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELAILNGTLREE 100
N+ LH+++ ++ I + I + + PV + + K+ QLRELAILNGTLRE
Sbjct: 240 NDDLHVVITSDSQSKIAKAIKLTNQVIEKAISSPVGQ--NDLKRGQLRELAILNGTLRET 297
Query: 101 SP 102
P
Sbjct: 298 KP 299
>sp|P0CO44|BBP_CRYNJ Branchpoint-bridging protein OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=BBP PE=3 SV=1
Length = 546
Score = 35.8 bits (81), Expect = 0.071, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 42 EPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELAILNGTLREE 100
+ LH L+ A+ E + +C+ ++E + DH K+ QLRELA LNGTLR++
Sbjct: 309 DELHCLITAD-DESKVKTCVALINKVIETAASTPEGENDH-KRNQLRELASLNGTLRDD 365
>sp|P0CO45|BBP_CRYNB Branchpoint-bridging protein OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=BBP PE=3 SV=1
Length = 546
Score = 35.8 bits (81), Expect = 0.071, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 42 EPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELAILNGTLREE 100
+ LH L+ A+ E + +C+ ++E + DH K+ QLRELA LNGTLR++
Sbjct: 309 DELHCLITAD-DESKVKTCVALINKVIETAASTPEGENDH-KRNQLRELASLNGTLRDD 365
>sp|Q4WXV6|BBP_ASPFU Branchpoint-bridging protein OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=bbp PE=3
SV=1
Length = 566
Score = 35.8 bits (81), Expect = 0.084, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
Query: 42 EPLHMLVEAEFPEVIINSCLDHAVAILENLLK---PVDESLDHYKKQQLRELAILNGTLR 98
E LH L+ A+ E + + A ++ N+++ + E + K+ QLRELA LNGTLR
Sbjct: 245 EDLHCLIMADTEEKV-----NKAKKLVHNVIETAASIPEGQNELKRNQLRELAALNGTLR 299
Query: 99 EE 100
++
Sbjct: 300 DD 301
>sp|A5CVZ9|LPXK_VESOH Tetraacyldisaccharide 4'-kinase OS=Vesicomyosocius okutanii subsp.
Calyptogena okutanii (strain HA) GN=lpxK PE=3 SV=1
Length = 315
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 14/97 (14%)
Query: 41 NEPLHMLVEAEFPEVIINSCLDHAVAILENL----LKPVDESLDHYKKQQLRELAILNGT 96
+EPL + ++A+ P V++N AV L N L D+ L HY+ + E+A+++GT
Sbjct: 105 DEPLLIALQADLP-VMVNRNRAQAVEDLINQCQVNLIISDDGLQHYRMDRNIEIAVIDGT 163
Query: 97 LREESPSMSPS--MSPSMSPF-------NNAGMKCAE 124
R + PS + S+ NNAG + E
Sbjct: 164 RRFGNEFFLPSGPLRESIDRLKSVDFVINNAGFRAGE 200
>sp|Q6ZL57|IAA24_ORYSJ Auxin-responsive protein IAA24 OS=Oryza sativa subsp. japonica
GN=IAA24 PE=2 SV=1
Length = 219
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 12 KVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAI 67
KVS++G PY KV++K GY L E L +L F + C D AI
Sbjct: 133 KVSMDGAPYLR-----KVDLKMCKGYRELREALDLLFTKCFSATASDGCSDGQFAI 183
>sp|Q60749|KHDR1_MOUSE KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Mus musculus GN=Khdrbs1 PE=1 SV=2
Length = 443
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 35 PGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELAILN 94
P Y HLN LH+ +E P + + HA+ ++ L P + +D ++Q EL+ LN
Sbjct: 218 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLN 275
Query: 95 G 95
G
Sbjct: 276 G 276
>sp|Q91V33|KHDR1_RAT KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Rattus norvegicus GN=Khdrbs1 PE=1 SV=1
Length = 443
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 35 PGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELAILN 94
P Y HLN LH+ +E P + + HA+ ++ L P + +D ++Q EL+ LN
Sbjct: 218 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLN 275
Query: 95 G 95
G
Sbjct: 276 G 276
>sp|B6QMS8|VPS10_PENMQ Vacuolar protein sorting/targeting protein 10 OS=Penicillium
marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333)
GN=vps10 PE=3 SV=1
Length = 1504
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 3 PEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLD 62
PE + +KF VS++G + S+ +E+ + GY L H + F V +N D
Sbjct: 919 PEKEHAMKFDVSVDGVTFADAEYSVNLEVSMELGYTLLQSTTHSV----FMHVTLNDQRD 974
Query: 63 HAVAIL 68
H +L
Sbjct: 975 HQYGLL 980
>sp|Q07666|KHDR1_HUMAN KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Homo sapiens GN=KHDRBS1 PE=1 SV=1
Length = 443
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 35 PGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDHYKKQQLRELAILN 94
P Y HLN LH+ +E P + + HA+ ++ L P + +D ++Q EL+ LN
Sbjct: 218 PKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLN 275
Query: 95 G 95
G
Sbjct: 276 G 276
>sp|Q6C187|BBP_YARLI Branchpoint-bridging protein OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=BBP PE=3 SV=1
Length = 605
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 33 DKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLK---PVDESLDHYKKQQLRE 89
D P + LH L+ +E E I AV +++ ++ V E + K+ QLRE
Sbjct: 234 DIPFQSTAEDDLHCLIISEDEEKIA-----RAVQLVQQVIDTAASVPEGQNELKRSQLRE 288
Query: 90 LAILNGTLREE 100
LA LNGTLR++
Sbjct: 289 LAALNGTLRDD 299
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,544,898
Number of Sequences: 539616
Number of extensions: 1849309
Number of successful extensions: 4309
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 4250
Number of HSP's gapped (non-prelim): 71
length of query: 127
length of database: 191,569,459
effective HSP length: 93
effective length of query: 34
effective length of database: 141,385,171
effective search space: 4807095814
effective search space used: 4807095814
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)