Query 039634
Match_columns 127
No_of_seqs 109 out of 334
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 20:06:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl5_A MGC83862 protein, quaki 100.0 8.3E-36 2.8E-40 222.4 3.7 96 2-103 30-130 (140)
2 1k1g_A SF1-BO isoform; splicin 100.0 1.6E-29 5.3E-34 186.0 7.3 90 2-102 35-130 (131)
3 2yqr_A KIAA0907 protein; struc 99.7 4.2E-17 1.4E-21 118.3 5.0 71 2-86 41-111 (119)
4 2opv_A KHSRP protein; KH domai 97.2 0.00071 2.4E-08 44.8 5.8 49 2-73 36-84 (85)
5 1x4m_A FAR upstream element bi 97.0 0.0015 5.1E-08 44.2 5.9 50 2-74 37-86 (94)
6 2hh3_A KH-type splicing regula 96.9 0.0012 4E-08 46.1 4.4 47 2-73 33-79 (106)
7 2hh2_A KH-type splicing regula 96.7 0.0031 1E-07 43.7 5.5 51 2-74 29-79 (107)
8 1dtj_A RNA-binding neurooncolo 96.7 0.0034 1.2E-07 40.3 5.2 50 2-73 25-74 (76)
9 1x4n_A FAR upstream element bi 96.6 0.003 1E-07 42.4 4.9 48 2-74 37-84 (92)
10 2p2r_A Poly(RC)-binding protei 96.3 0.0067 2.3E-07 39.1 4.9 47 2-73 27-73 (76)
11 1wvn_A Poly(RC)-binding protei 96.2 0.0074 2.5E-07 39.5 4.7 48 2-74 28-75 (82)
12 1zzk_A Heterogeneous nuclear r 96.2 0.008 2.7E-07 39.4 4.8 47 2-73 29-75 (82)
13 1we8_A Tudor and KH domain con 96.1 0.008 2.7E-07 41.2 4.6 49 2-73 37-85 (104)
14 1j5k_A Heterogeneous nuclear r 96.0 0.0095 3.3E-07 39.7 4.8 47 2-73 36-82 (89)
15 1ec6_A RNA-binding protein NOV 96.0 0.0091 3.1E-07 39.4 4.5 50 2-73 25-74 (87)
16 2cte_A Vigilin; K homology typ 95.9 0.0066 2.2E-07 41.0 3.4 45 2-73 39-83 (94)
17 2dgr_A Ring finger and KH doma 95.8 0.013 4.3E-07 39.1 4.7 44 2-73 32-75 (83)
18 2axy_A Poly(RC)-binding protei 95.6 0.019 6.4E-07 36.9 4.6 45 2-73 27-71 (73)
19 3krm_A Insulin-like growth fac 95.5 0.017 5.8E-07 41.5 4.8 50 2-74 107-156 (163)
20 2ctl_A Vigilin; K homology typ 95.1 0.024 8.1E-07 38.6 4.1 49 1-73 38-86 (97)
21 1vig_A Vigilin; RNA-binding pr 95.1 0.044 1.5E-06 35.0 5.1 44 2-72 27-70 (71)
22 2ctm_A Vigilin; K homology typ 95.0 0.031 1E-06 37.9 4.5 46 2-73 39-84 (95)
23 1j4w_A FUSE binding protein; s 94.6 0.059 2E-06 39.2 5.4 49 2-72 126-174 (174)
24 2ctk_A Vigilin; K homology typ 94.5 0.046 1.6E-06 37.6 4.4 45 2-73 39-83 (104)
25 2jvz_A KH type-splicing, FAR u 94.3 0.056 1.9E-06 38.5 4.6 47 2-73 113-159 (164)
26 1j4w_A FUSE binding protein; s 93.4 0.11 3.9E-06 37.6 4.9 48 2-74 25-72 (174)
27 2jvz_A KH type-splicing, FAR u 92.7 0.24 8.3E-06 35.1 5.8 51 2-75 24-74 (164)
28 2jzx_A Poly(RC)-binding protei 92.5 0.13 4.3E-06 36.7 4.0 48 2-73 111-158 (160)
29 2anr_A Neuro-oncological ventr 92.0 0.19 6.5E-06 36.5 4.5 52 2-75 28-79 (178)
30 2ctj_A Vigilin; K homology typ 89.8 0.32 1.1E-05 32.9 3.7 45 2-73 39-84 (95)
31 2jzx_A Poly(RC)-binding protei 89.6 0.49 1.7E-05 33.6 4.7 44 2-72 27-70 (160)
32 2anr_A Neuro-oncological ventr 88.9 0.41 1.4E-05 34.6 3.9 50 2-74 126-175 (178)
33 1tua_A Hypothetical protein AP 88.4 0.96 3.3E-05 34.4 5.8 57 2-90 120-185 (191)
34 2cpq_A FragIle X mental retard 88.3 0.6 2.1E-05 31.8 4.2 44 2-74 37-81 (91)
35 3u1k_A Polyribonucleotide nucl 88.0 0.33 1.1E-05 43.1 3.4 42 1-72 588-629 (630)
36 3krm_A Insulin-like growth fac 86.6 1.1 3.8E-05 31.8 5.0 47 2-72 25-71 (163)
37 2qnd_A FMR1 protein; KH domain 86.1 1.1 3.8E-05 32.0 4.8 51 2-73 89-141 (144)
38 2e3u_A PH-DIM2P, hypothetical 84.2 1.5 5E-05 33.9 5.0 42 2-75 151-192 (219)
39 2e3u_A PH-DIM2P, hypothetical 65.0 8.4 0.00029 29.6 4.6 42 2-73 56-102 (219)
40 3n89_A Defective in GERM LINE 60.7 5 0.00017 33.5 2.8 51 2-73 210-260 (376)
41 1wjw_A Phosphoacetylglucosamin 58.3 27 0.00094 23.7 5.8 29 43-72 69-97 (112)
42 3isp_A HTH-type transcriptiona 54.1 3.3 0.00011 30.5 0.5 20 2-21 41-60 (303)
43 1xao_A YDJ1, mitochondrial pro 54.1 18 0.00062 24.8 4.3 30 41-74 67-98 (121)
44 3fzv_A Probable transcriptiona 52.6 2.8 9.4E-05 30.7 -0.1 21 2-22 39-61 (306)
45 3n89_A Defective in GERM LINE 52.6 22 0.00076 29.6 5.3 50 2-71 54-103 (376)
46 4aid_A Polyribonucleotide nucl 50.2 4.1 0.00014 36.7 0.6 43 2-74 592-634 (726)
47 3mz1_A Putative transcriptiona 48.3 3.7 0.00013 29.5 0.0 18 2-19 33-50 (300)
48 2kie_A Inositol polyphosphate 40.4 12 0.0004 26.8 1.6 14 5-18 81-94 (124)
49 3agx_A DNAJ homolog subfamily 34.9 41 0.0014 24.5 3.9 27 42-72 153-179 (181)
50 3szp_A Transcriptional regulat 31.9 13 0.00045 26.5 0.7 18 2-19 36-53 (291)
51 3i38_A Putative chaperone DNAJ 30.3 69 0.0024 21.5 4.2 15 41-55 67-81 (109)
52 2q2g_A HSP40 protein, heat sho 30.2 55 0.0019 23.7 3.9 49 8-72 131-179 (180)
53 3hhg_A Transcriptional regulat 29.3 15 0.00052 26.6 0.7 18 2-19 38-55 (306)
54 2esn_A Probable transcriptiona 26.9 18 0.00062 26.4 0.7 18 2-19 45-62 (310)
55 1wqa_A Phospho-sugar mutase; a 26.6 94 0.0032 25.5 5.1 29 43-72 426-454 (455)
56 2h9b_A HTH-type transcriptiona 22.2 19 0.00064 26.7 0.0 18 2-19 36-53 (312)
57 1ixc_A CBNR, LYSR-type regulat 22.0 16 0.00054 26.4 -0.4 18 2-19 36-53 (294)
58 3fxq_A LYSR type regulator of 21.5 27 0.00093 25.5 0.8 18 2-19 37-54 (305)
59 2h98_A HTH-type transcriptiona 20.7 21 0.00071 26.7 0.0 18 2-19 36-53 (313)
60 1uth_A LYSR-type regulatory pr 20.5 21 0.00073 26.5 0.0 18 2-19 49-66 (315)
No 1
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=100.00 E-value=8.3e-36 Score=222.44 Aligned_cols=96 Identities=35% Similarity=0.485 Sum_probs=91.4
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccc-----cCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcCCCC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVE-----IKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVD 76 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~-----~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~p~~ 76 (127)
+|+||++|||||+||||| |+||+ .+|+|+|+|++|||||+|+|++++++|+++|++|+++|++||.|++
T Consensus 30 ~K~ie~eTg~kI~IrGkG------S~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~~~~~l~~A~~~I~~lL~p~~ 103 (140)
T 2bl5_A 30 AKQLEAETGCKIMVRGKG------SMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVPAA 103 (140)
T ss_dssp HHHHHHHHSEEEEEESTT------SSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHHHHCCeEEEecCC------CcccccccccccCCCCccccCCCcEEEEEecCchhhHHHHHHHHHHHHHHHCCCCC
Confidence 799999999999999999 88876 4678999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHhCcccCCCCC
Q 039634 77 ESLDHYKKQQLRELAILNGTLREESPS 103 (127)
Q Consensus 77 e~~delK~~QL~eLA~lNGt~r~~~~~ 103 (127)
+++|++|++||+|||+||||||+++++
T Consensus 104 e~~de~K~~QL~eLA~lNGt~r~~~~~ 130 (140)
T 2bl5_A 104 EGEDSLKKMKLMELAILNGTYRDANLK 130 (140)
T ss_dssp SSSSHHHHHHHTGGGSSSTTTSGGGGS
T ss_pred cchhHHHHHHHHHHHHhcCCcCCCccc
Confidence 999999999999999999999998776
No 2
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.96 E-value=1.6e-29 Score=186.02 Aligned_cols=90 Identities=37% Similarity=0.442 Sum_probs=77.0
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCC---CCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcCC---C
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDK---PGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKP---V 75 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~---~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~p---~ 75 (127)
+|+||+||||||.|||+| |+|++..+. ..|+|++|||||+|+|++++ .|++|+++|+.||.+ +
T Consensus 35 iK~Iq~eTG~kI~Irgkg------S~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e-----~~~~A~~~I~~ll~~~~~~ 103 (131)
T 1k1g_A 35 LKNIEKECNAKIMIRGKG------SVKEGKVGRKDGQMLPGEDEPLHALVTANTME-----NVKKAVEQIRNILKQGIET 103 (131)
T ss_dssp HHHHHHHSCCEEEEEEST------TSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH-----HHHHHHHHHHHHHTTTTSC
T ss_pred HHHHHHHHCCeEEecCCc------ccccccccccccccccccCCCeEEEEEECCHH-----HHHHHHHHHHHHHhccCCC
Confidence 699999999999999999 888874332 34678999999999999965 499999999999975 7
Q ss_pred CcchhHHHHHHHHHHHHHhCcccCCCC
Q 039634 76 DESLDHYKKQQLRELAILNGTLREESP 102 (127)
Q Consensus 76 ~e~~delK~~QL~eLA~lNGt~r~~~~ 102 (127)
|+++|++|++||+|||+||||||++++
T Consensus 104 p~~~d~~k~~Ql~eLa~~nGt~r~~~~ 130 (131)
T 1k1g_A 104 PEDQNDLRKMQLRELARLNGTLREDDN 130 (131)
T ss_dssp CTTSSGGGGGGGHHHHHHHTCCC----
T ss_pred CccHHHHHHHHHHHHHHHcCcCCCcCC
Confidence 899999999999999999999998764
No 3
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4.2e-17 Score=118.28 Aligned_cols=71 Identities=25% Similarity=0.304 Sum_probs=60.1
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcCCCCcchhH
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDESLDH 81 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~p~~e~~de 81 (127)
+|+||+||||||.|||+| |.+.. +..+ ++++|||||+|+|++++. +++|+++|++||.++.+..++
T Consensus 41 iK~I~~eTG~kI~I~G~g------S~~~e--~~~~-~e~~e~l~V~I~a~~~e~-----i~~A~~~Ie~Ll~~v~~~~~~ 106 (119)
T 2yqr_A 41 LQHIQIETGAKVFLRGKG------SGCIE--PASG-REAFEPMYIYISHPKPEG-----LAAAKKLCENLLQTVHAEYSR 106 (119)
T ss_dssp HHHHHHHHCCEEEEESBT------TTCCC--TTTS-SCCSSBCEEEEEESSHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEEecCC------ccccc--cccc-cccCCCcEEEEEeCCHHH-----HHHHHHHHHHHhhchHHHHHH
Confidence 699999999999999999 65522 1122 358999999999999755 899999999999999888899
Q ss_pred HHHHH
Q 039634 82 YKKQQ 86 (127)
Q Consensus 82 lK~~Q 86 (127)
+|++|
T Consensus 107 ~~~q~ 111 (119)
T 2yqr_A 107 FVNQI 111 (119)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98876
No 4
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=97.22 E-value=0.00071 Score=44.84 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=38.1
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLK 73 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~ 73 (127)
+|+|+++|||+|.|...| +. + .+.+-+|.|+| +++ .+++|+++|+.++.
T Consensus 36 Ik~I~~~tga~I~i~~~~------~~-------~----~~~er~v~I~G-~~~-----~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 36 IKQLQERAGVKMILIQDG------SQ-------N----TNVDKPLRIIG-DPY-----KVQQACEMVMDILR 84 (85)
T ss_dssp HHHHHHHHTCEEEECSSS------CS-------S----TTSCEEEEEEE-CHH-----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCEEEEcCCC------CC-------C----CCCceEEEEEe-CHH-----HHHHHHHHHHHHhc
Confidence 689999999999998876 21 1 23456799999 654 48999999999874
No 5
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=97.03 E-value=0.0015 Score=44.17 Aligned_cols=50 Identities=8% Similarity=0.036 Sum_probs=38.6
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcCC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKP 74 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~p 74 (127)
+|+|+++|||+|.|-..| .. + ...+-.|.|+| +++. +++|+++|+++|..
T Consensus 37 Ik~I~~~tga~I~I~~~~------~~---------~--~~~~r~v~I~G-~~~~-----v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 37 IKQLQERAGVKMVMIQDG------PQ---------N--TGADKPLRITG-DPYK-----VQQAKEMVLELIRD 86 (94)
T ss_dssp HHHHHHHHTSEEEECCSC------CC---------S--SCSCEEEEEEE-CTTT-----HHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCeEEecCCC------CC---------C--CCCceEEEEEe-CHHH-----HHHHHHHHHHHHhc
Confidence 689999999999998766 11 0 12346799999 5543 89999999999974
No 6
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=96.85 E-value=0.0012 Score=46.06 Aligned_cols=47 Identities=13% Similarity=0.182 Sum_probs=35.8
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLK 73 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~ 73 (127)
+|+|+++|||+|.|.-.+ + .+.+-.|.|++. ++ .+++|+++|++++.
T Consensus 33 Ik~I~~~TGakI~I~~~~---------------~----~~~er~V~I~G~-~e-----~v~~A~~~I~~ii~ 79 (106)
T 2hh3_A 33 IKKIQNDAGVRIQFKQDD---------------G----TGPEKIAHIMGP-PD-----RCEHAARIINDLLQ 79 (106)
T ss_dssp HHHHHHHHTCEEEECSSC---------------S----SSSEEEEEEESS-HH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcEEEEecCC---------------C----CCceeEEEEEeC-HH-----HHHHHHHHHHHHHh
Confidence 689999999999997533 1 123467899986 43 48999999999876
No 7
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=96.69 E-value=0.0031 Score=43.67 Aligned_cols=51 Identities=16% Similarity=0.196 Sum_probs=37.5
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcCC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKP 74 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~p 74 (127)
+|+|+++|||+|.|.... . +. . ...+-.|.|+| +++ .+++|+++|+++|.-
T Consensus 29 Ik~I~~~TGa~I~I~~~~------~--------~~-~-~~~~r~V~I~G-~~e-----~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 29 VKAINQQTGAFVEISRQL------P--------PN-G-DPNFKLFIIRG-SPQ-----QIDHAKQLIEEKIEG 79 (107)
T ss_dssp HHHHHHHSSSEEEECCCC------C--------TT-C-CTTEEEEEEES-CHH-----HHHHHHHHHHHHSCS
T ss_pred HHHHHHHhCCEEEEcCcc------C--------CC-C-CCCceEEEEEC-CHH-----HHHHHHHHHHHHHhc
Confidence 689999999999998754 1 11 0 12335688998 543 489999999999874
No 8
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=96.65 E-value=0.0034 Score=40.26 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=37.4
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLK 73 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~ 73 (127)
+|+|+++|||+|.|...+ ... ++ ..+-.|.|+|. ++ .+.+|..+|+.++.
T Consensus 25 Ik~I~~~tga~I~i~~~~------~~~------~~----~~~~~v~I~G~-~~-----~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 25 LVEYQELTGARIQISKKG------EFL------PG----TRNRRVTITGS-PA-----ATQAAQYLISQRVT 74 (76)
T ss_dssp HHHHHHHHCCEEEECCTT------CCS------TT----CCEEEEEEEES-HH-----HHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCEEEECcCC------CCC------CC----CceeEEEEEeC-HH-----HHHHHHHHHHHHHh
Confidence 589999999999998765 111 11 23467889986 43 48999999999875
No 9
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=96.62 E-value=0.003 Score=42.44 Aligned_cols=48 Identities=15% Similarity=0.236 Sum_probs=36.2
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcCC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKP 74 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~p 74 (127)
+|+|+++|||+|.|.... ++ ..+-.|.|+|. ++ .+++|+++|++++..
T Consensus 37 Ik~I~~~tga~I~I~~~~---------------~g----~~~r~v~I~G~-~e-----~v~~A~~~I~~~i~~ 84 (92)
T 1x4n_A 37 ISRIQQESGCKIQIAPDS---------------GG----LPERSCMLTGT-PE-----SVQSAKRLLDQIVEK 84 (92)
T ss_dssp HHHHHHHSCCEEEECSCC---------------TT----CSEEEEEEEEC-HH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEcCCC---------------CC----CCccEEEEEeC-HH-----HHHHHHHHHHHHHHh
Confidence 589999999999998643 11 12357889986 43 488999999998763
No 10
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=96.30 E-value=0.0067 Score=39.07 Aligned_cols=47 Identities=11% Similarity=0.149 Sum_probs=35.9
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLK 73 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~ 73 (127)
+|+|+++|||+|.|-... ++ ..+=.|.|+|. ++ .+.+|.++|+++|.
T Consensus 27 Ik~I~~~tga~I~i~~~~---------------~~----~~~~~v~I~G~-~~-----~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 27 INEIRQMSGAQIKIANPV---------------EG----STDRQVTITGS-AA-----SISLAQYLINVRLS 73 (76)
T ss_dssp HHHHHHHHCCEEEECCCC---------------TT----CSEEEEEEEEC-HH-----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCEEEEcCCC---------------CC----CCeEEEEEEeC-HH-----HHHHHHHHHHHHHH
Confidence 589999999999997522 11 23357899996 43 48999999999886
No 11
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=96.17 E-value=0.0074 Score=39.47 Aligned_cols=48 Identities=8% Similarity=0.071 Sum_probs=36.0
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcCC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKP 74 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~p 74 (127)
+|+|+++|||+|.|-... + ...+=.|.|+|.. ..+++|+++|++++..
T Consensus 28 Ik~I~~~sga~I~i~~~~---------------~----~~~~r~v~I~G~~------~~v~~A~~~I~~~i~~ 75 (82)
T 1wvn_A 28 INEIRQMSGAQIKIANPV---------------E----GSSGRQVTITGSA------ASISLAQYLINARLSS 75 (82)
T ss_dssp HHHHHHHHCCEEEECCCC---------------T----TCSEEEEEEEECH------HHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhCCEEEEecCC---------------C----CCCceEEEEEcCH------HHHHHHHHHHHHHHHh
Confidence 589999999999997522 1 1233578899865 2489999999999873
No 12
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=96.17 E-value=0.008 Score=39.37 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=34.8
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLK 73 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~ 73 (127)
+|+|+++|||+|.|...- ++ ..+-.|.|+|. ++ .+++|.++|++++.
T Consensus 29 Ik~I~~~tga~I~i~~~~---------------~~----~~~~~v~I~G~-~~-----~v~~A~~~I~~~i~ 75 (82)
T 1zzk_A 29 IKQIRHESGASIKIDEPL---------------EG----SEDRIITITGT-QD-----QIQNAQYLLQNSVK 75 (82)
T ss_dssp HHHHHHHHCCEEEECCTT---------------SC----SSEEEEEEEEC-HH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEEcCCC---------------CC----CCceEEEEEeC-HH-----HHHHHHHHHHHHHH
Confidence 589999999999996421 11 12357889994 43 48999999999875
No 13
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=96.05 E-value=0.008 Score=41.20 Aligned_cols=49 Identities=8% Similarity=-0.025 Sum_probs=37.3
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLK 73 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~ 73 (127)
+|+|+++|||+|.|-... .+. ..++=.|.|+|... .+++|+++|+.++.
T Consensus 37 Ik~I~~~tga~I~I~~~~---------------~~~--~~~~~~V~I~G~~~------~v~~A~~~I~~~i~ 85 (104)
T 1we8_A 37 IRSICKASGAKITCDKES---------------EGT--LLLSRLIKISGTQK------EVAAAKHLILEKVS 85 (104)
T ss_dssp HHHHHHHHCCEEEECCSS---------------CCS--SSSEEEEEEEEEHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEEecCC---------------CCC--CCCcceEEEEcCHH------HHHHHHHHHHHHHh
Confidence 689999999999997654 110 12346799998763 48999999999986
No 14
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=96.05 E-value=0.0095 Score=39.65 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=34.5
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLK 73 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~ 73 (127)
+|+|+++|||+|.|...- ++ ..+=.|.|+|. ++ .+++|+++|++++.
T Consensus 36 Ik~I~~~tga~I~I~~~~---------------~~----~~~~~v~I~G~-~e-----~v~~A~~~I~~~i~ 82 (89)
T 1j5k_A 36 IKQIRHESGASIKIDEPL---------------EG----SEDRIITITGT-QD-----QIQNAQYLLQNSVK 82 (89)
T ss_dssp HHHHHHHTCCEEEECSCC---------------SS----SSEEEEEEEEE-HH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCeEEecCCC---------------CC----CCccEEEEEcC-HH-----HHHHHHHHHHHHHH
Confidence 589999999999996421 11 12346889987 43 47899999998875
No 15
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=96.00 E-value=0.0091 Score=39.44 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=37.2
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLK 73 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~ 73 (127)
+|+|+++|||+|.|-..+ ... ++ ..+=.|.|+|. ++ .+.+|..+|+.+|.
T Consensus 25 Ik~I~~~tga~I~I~~~~------~~~------~g----~~~r~v~I~G~-~~-----~v~~A~~~I~~~i~ 74 (87)
T 1ec6_A 25 LVEYQELTGARIQISKKG------EFL------PG----TRNRRVTITGS-PA-----ATQAAQYLISQRVT 74 (87)
T ss_dssp HHHHHHHHCCEEEECCTT------CBS------TT----SCEEEEEEESS-HH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEccCC------CCC------CC----CCceEEEEEcC-HH-----HHHHHHHHHHHHHh
Confidence 589999999999998755 211 11 13357889986 43 48999999999986
No 16
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=95.87 E-value=0.0066 Score=40.98 Aligned_cols=45 Identities=11% Similarity=0.093 Sum_probs=34.0
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLK 73 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~ 73 (127)
+|+|+++|||+|.|-..+ +++=.|.|+|. ++. +++|.++|+.++.
T Consensus 39 Ik~I~~etg~~I~i~~~~---------------------~~~~~V~I~G~-~e~-----v~~A~~~I~~i~~ 83 (94)
T 2cte_A 39 LQDLELKTATKIQIPRPD---------------------DPSNQIKITGT-KEG-----IEKARHEVLLISA 83 (94)
T ss_dssp HHHHHHHTTCCCBCCCTT---------------------SSCCEEEEEEC-HHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEeCCCC---------------------CCCCeEEEEEC-HHH-----HHHHHHHHHHHhh
Confidence 589999999999986433 01137899998 544 7899999988875
No 17
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.83 E-value=0.013 Score=39.12 Aligned_cols=44 Identities=16% Similarity=0.131 Sum_probs=33.3
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLK 73 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~ 73 (127)
+|+||++|||+|.|-.++ +++ .|.|+|... . +++|+.+|+.++.
T Consensus 32 Ik~Iqe~Tga~I~I~~~~---------------------~~~-~v~ItG~~e-~-----v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 32 IKRIQQRTHTYIVTPGRD---------------------KEP-VFAVTGMPE-N-----VDRAREEIEAHIT 75 (83)
T ss_dssp HHHHHHHTTCEEECCCSS---------------------SCC-EEEEEECTT-T-----HHHHHHHHHHHHH
T ss_pred HHHHHHHhCCeEEecCCC---------------------CCC-eEEEEcCHH-H-----HHHHHHHHHHHHh
Confidence 689999999999996533 122 377888763 3 7899999998754
No 18
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=95.57 E-value=0.019 Score=36.90 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=34.5
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLK 73 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~ 73 (127)
+|+|+++|||+|.|-..| + .+=-|.|+|. ++. +.+|.++|.++|.
T Consensus 27 Ik~I~~~tga~I~i~~~~------~---------------~er~v~I~G~-~~~-----v~~A~~~I~~~l~ 71 (73)
T 2axy_A 27 VKKMREESGARINISEGN------C---------------PERIITLAGP-TNA-----IFKAFAMIIDKLE 71 (73)
T ss_dssp HHHHHHHHCCEEEECSSC------C---------------SEEEEEEEEC-HHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEEecCC------C---------------CcEEEEEEeC-HHH-----HHHHHHHHHHHHh
Confidence 589999999999997644 1 1235888988 543 7899999998875
No 19
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=95.53 E-value=0.017 Score=41.50 Aligned_cols=50 Identities=14% Similarity=0.115 Sum_probs=37.9
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcCC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKP 74 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~p 74 (127)
+|+|+++|||+|.|-..| .|+ .++.-.|.|+| +++ .+++|.++|+++|.-
T Consensus 107 I~~i~~~tga~I~i~~~~--------------~~~---~~~~~~v~I~G-~~~-----~v~~A~~~I~~~i~~ 156 (163)
T 3krm_A 107 VNELQNLTAAEVVVPRDQ--------------TPD---ENDQVIVKIIG-HFY-----ASQMAQRKIRDILAQ 156 (163)
T ss_dssp HHHHHHHHCCEEECCTTC--------------CCC---TTSEEEEEEEE-CHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCeEEECCCC--------------CCC---CCCceEEEEEe-CHH-----HHHHHHHHHHHHHHH
Confidence 588999999999997655 121 34445789999 543 489999999999873
No 20
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=95.12 E-value=0.024 Score=38.56 Aligned_cols=49 Identities=4% Similarity=0.051 Sum_probs=35.1
Q ss_pred CchhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcC
Q 039634 1 MTPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLK 73 (127)
Q Consensus 1 ~~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~ 73 (127)
++|+|+++|||+|.|--.| . ++ ..+=-|.|+|. ++ .+++|.++|+.++.
T Consensus 38 ~Ik~I~~etg~~I~i~~~g------~--------~~----~~~~~V~I~G~-~e-----~v~~A~~~I~~iv~ 86 (97)
T 2ctl_A 38 VITQIRLEHDVNIQFPDKD------D--------GN----QPQDQITITGY-EK-----NTEAARDAILRIVG 86 (97)
T ss_dssp HHHHHHHHHTCEEECCCTT------T--------CS----SCSSEEEEESC-HH-----HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHCCEEEecCCC------C--------CC----CCccEEEEEeC-HH-----HHHHHHHHHHHHHH
Confidence 3689999999999996655 1 11 12245889986 43 37888888888764
No 21
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=95.07 E-value=0.044 Score=34.98 Aligned_cols=44 Identities=16% Similarity=0.083 Sum_probs=33.6
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhc
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLL 72 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL 72 (127)
+++|+++|||+|.|--.| + .+=-|.|+|.. + .+++|.++|+.++
T Consensus 27 I~~I~e~tg~~I~i~~~g------~---------------~~~~V~I~G~~-~-----~v~~A~~~I~~i~ 70 (71)
T 1vig_A 27 INRIKDQYKVSVRIPPDS------E---------------KSNLIRIEGDP-Q-----GVQQAKRELLELA 70 (71)
T ss_dssp HHHHHHHTCCEEECCCCC------S---------------SSEEEEEEESS-H-----HHHHHHHHHHHTC
T ss_pred HHHHHHHHCCEEEECCCC------C---------------cccEEEEEcCH-H-----HHHHHHHHHHHHh
Confidence 689999999999996544 1 11258899984 3 3899999999875
No 22
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=95.05 E-value=0.031 Score=37.93 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=33.8
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLK 73 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~ 73 (127)
+|+|+++|||+|.|-..| + ..+=.|.|+|. +++ +++|+++|+.|+.
T Consensus 39 Ir~I~e~tg~~I~i~~~g------~--------------~~~~~V~I~G~-~e~-----v~~A~~~I~~i~~ 84 (95)
T 2ctm_A 39 IRKIMDEFKVDIRFPQSG------A--------------PDPNCVTVTGL-PEN-----VEEAIDHILNLEE 84 (95)
T ss_dssp HHHHHHHHTCEEECCCTT------C--------------SCTTEEEEESC-HHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCeEEecCCC------C--------------CCCcEEEEEcC-HHH-----HHHHHHHHHHHHH
Confidence 589999999999997665 1 11246889987 333 7888888888754
No 23
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=94.62 E-value=0.059 Score=39.17 Aligned_cols=49 Identities=12% Similarity=0.196 Sum_probs=34.8
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhc
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLL 72 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL 72 (127)
+|+|+++|||+|.|-... . + .. ...+=.|.|+| ++ ..+.+|.++|+++|
T Consensus 126 Ik~I~~~tga~I~i~~~~------~--------~-~~-~~~~~~v~I~G-~~-----~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 126 IKSISQQSGARIELQRNP------P--------P-NA-DPNMKLFTIRG-TP-----QQIDYARQLIEEKI 174 (174)
T ss_dssp HHHHHHHHCCEEEEECCC------T--------T-TS-CTTEEEEEEEC-CH-----HHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCEEEECCCC------C--------C-CC-CCCceEEEEEC-CH-----HHHHHHHHHHHHhC
Confidence 589999999999998754 1 1 11 12234688888 44 34899999999875
No 24
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=94.51 E-value=0.046 Score=37.59 Aligned_cols=45 Identities=13% Similarity=0.011 Sum_probs=35.0
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLK 73 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~ 73 (127)
+|+|+++|||+|.|--.| + ++=.|.|+|.. + .+++|+++|+.++.
T Consensus 39 Ir~I~eetg~~I~I~~~g------~---------------~~~~V~I~G~~-e-----~v~~A~~~I~~i~~ 83 (104)
T 2ctk_A 39 IRKMMDEFEVNIHVPAPE------L---------------QSDIIAITGLA-A-----NLDRAKAGLLERVK 83 (104)
T ss_dssp HHHHHHHTCCEEECCCTT------T---------------TCCEEEEEECH-H-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEecCCC------C---------------CcceEEEEcCH-H-----HHHHHHHHHHHHHh
Confidence 689999999999996555 1 01279999974 3 38999999999876
No 25
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=94.27 E-value=0.056 Score=38.51 Aligned_cols=47 Identities=13% Similarity=0.182 Sum_probs=35.2
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLK 73 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~ 73 (127)
+|+|+++|||+|.|-... + ...+=.|.|+|. ++ .+++|..+|+.+|.
T Consensus 113 I~~i~~~tg~~I~i~~~~---------------~----~~~~~~v~I~G~-~~-----~v~~A~~~I~~~i~ 159 (164)
T 2jvz_A 113 IKKIQNDAGVRIQFKQDD---------------G----TGPEKIAHIMGP-PD-----RCEHAARIINDLLQ 159 (164)
T ss_dssp HHHHHHHTCCEEEECCCC---------------T----TSSEEEEEEESC-HH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCeEEEeCCC---------------C----CCCcEEEEEEcC-HH-----HHHHHHHHHHHHHh
Confidence 689999999999996543 1 112356888886 43 48999999999875
No 26
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=93.41 E-value=0.11 Score=37.60 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=34.5
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcCC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKP 74 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~p 74 (127)
+|+|+++|||+|.|...- + ...+-.|.|+|. ++ .+.+|.++|.++|..
T Consensus 25 Ik~i~~~tg~~I~i~~~~---------------~----~~~~r~v~I~G~-~~-----~v~~A~~~I~~~~~~ 72 (174)
T 1j4w_A 25 IKKIQNDAGVRIQFKPDD---------------G----TTPERIAQITGP-PD-----RAQHAAEIITDLLRS 72 (174)
T ss_dssp HHHHHHHHCCEEEEECCT---------------T----SCSEEEEEEEEC-HH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEecCC---------------C----CCCccEEEEEeC-HH-----HHHHHHHHHHHHHHh
Confidence 689999999999996421 1 112346788887 33 478999999888763
No 27
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=92.75 E-value=0.24 Score=35.11 Aligned_cols=51 Identities=12% Similarity=0.051 Sum_probs=36.4
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcCCC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPV 75 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~p~ 75 (127)
+|+|+++|||+|.|--.+ +. + ...+-.|.|+| ++ ..+.+|..+|..++...
T Consensus 24 Ik~i~~~tg~~I~i~~~~------~~-------~----~~~~r~v~I~G-~~-----~~v~~A~~~I~~ii~e~ 74 (164)
T 2jvz_A 24 IKQLQERAGVKMILIQDG------SQ-------N----TNVDKPLRIIG-DP-----YKVQQACEMVMDILRER 74 (164)
T ss_dssp HHHHHHTSCSEEEECCCT------TS-------S----SSSCEEEEEEE-CH-----HHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhCCeEEEecCC------CC-------C----CCCceEEEEEc-CH-----HHHHHHHHHHHHHHHhc
Confidence 689999999999995433 11 1 12335788898 43 34889999999998853
No 28
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=92.51 E-value=0.13 Score=36.72 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=34.4
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLK 73 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~ 73 (127)
+|+|+++|||+|.|.+.. .|+ ..+=.|.|+| +++ .+.+|.++|.++|.
T Consensus 111 Ik~i~~~tga~I~i~~~~--------------~~~----~~~~~v~I~G-~~~-----~v~~A~~~I~~~i~ 158 (160)
T 2jzx_A 111 IKEIRESTGAQVQVAGDM--------------LPN----STERAITIAG-IPQ-----SIIECVKQICVVML 158 (160)
T ss_dssp HHHHHHHHSSEECCCCCC--------------STT----CCEEEEEEEE-CHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCeEEECCCC--------------CCC----CCceEEEEEc-CHH-----HHHHHHHHHHHHHh
Confidence 589999999999997632 121 2335688999 443 48899999888763
No 29
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=92.02 E-value=0.19 Score=36.46 Aligned_cols=52 Identities=10% Similarity=0.196 Sum_probs=35.4
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcCCC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPV 75 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~p~ 75 (127)
+|+|+++|||+|.|--.+ ..- ++ ..+ =.|.|+|. + +.+.+|.++|.+++.-.
T Consensus 28 Ik~i~~~tg~~I~i~~~~------~~~------~~---~~e-r~v~I~G~-~-----~~v~~A~~~I~~~~~~~ 79 (178)
T 2anr_A 28 IVQLQKETGATIKLSKSK------DFY------PG---TTE-RVCLIQGT-I-----EALNAVHGFIAEKIREM 79 (178)
T ss_dssp HHHHHHHHCCEEEECCTT------CBC------TT---SSE-EEEEEEEC-H-----HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhCCeEEEecCC------CCC------CC---CCC-ceEEEEeC-H-----HHHHHHHHHHHHHHhcc
Confidence 589999999999997544 110 11 112 24778886 2 24788999999888753
No 30
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=89.83 E-value=0.32 Score=32.92 Aligned_cols=45 Identities=9% Similarity=-0.058 Sum_probs=34.2
Q ss_pred chhhhhhc-CcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcC
Q 039634 2 TPEVDLLI-KFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLK 73 (127)
Q Consensus 2 ~K~LE~eT-gcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~ 73 (127)
+++|+++| ||+|.|--.| +- .=.|.|.|.+. .+++|+++|+.++.
T Consensus 39 Ir~I~eetggv~I~i~~~g------~~---------------~~~V~I~G~~~------~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 39 IRSIMEECGGVHIHFPVEG------SG---------------SDTVVIRGPSS------DVEKAKKQLLHLAE 84 (95)
T ss_dssp HHHHHHHHTSCEEECCCTT------TT---------------CCEEEEESCHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEeCCCC------CC---------------cceEEEEcCHH------HHHHHHHHHHHHHh
Confidence 58899999 9999886544 10 12588998763 58999999999875
No 31
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=89.60 E-value=0.49 Score=33.57 Aligned_cols=44 Identities=9% Similarity=0.068 Sum_probs=30.7
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhc
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLL 72 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL 72 (127)
+|+|+++|||+|.|-..| + .+-.|.|+|. + ..+.+|...|.+++
T Consensus 27 Ik~i~~~tg~~I~i~~~~------~---------------~~r~v~I~G~-~-----~~v~~A~~~I~~~i 70 (160)
T 2jzx_A 27 VKKMREESGARINISEGN------C---------------PERIITLAGP-T-----NAIFKAFAMIIDKL 70 (160)
T ss_dssp HHHHHHHHCSEEEEECCT------T---------------TEEEEEEEEE-H-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEEcCCC------C---------------CceEEEEEeC-H-----HHHHHHHHHHHHHH
Confidence 589999999999997644 1 1246788886 2 23677777776554
No 32
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=88.94 E-value=0.41 Score=34.65 Aligned_cols=50 Identities=12% Similarity=-0.051 Sum_probs=35.5
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcCC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKP 74 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~p 74 (127)
+|+|+++|||+|.|-... .. + ...+=.|.|+|.. ..+.+|..+|.++|.-
T Consensus 126 Ik~i~~~tga~I~i~~~~------~~-------~----~~~~~~v~I~G~~------~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 126 VKAIMEQSGAWVQLSQKP------DG-------I----NLQNRVVTVSGEP------EQNRKAVELIIQKIQE 175 (178)
T ss_dssp HHHHHHHSSCEEEECCCC---------------------CCEEEEEEESSH------HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCEEEEeCCC------CC-------C----CCCceEEEEEcCH------HHHHHHHHHHHHHHHh
Confidence 589999999999997644 10 1 1122467888865 3489999999998874
No 33
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=88.35 E-value=0.96 Score=34.43 Aligned_cols=57 Identities=7% Similarity=0.117 Sum_probs=38.3
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcCCCCc----
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPVDE---- 77 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~p~~e---- 77 (127)
.|.||..|||+|.|-|+ .|.|.|.- ..++.|...|++|+.-.+-
T Consensus 120 ik~iE~~Tg~~I~v~~~--------------------------~v~i~G~~------~~i~~Ar~~i~~li~g~~h~~vy 167 (191)
T 1tua_A 120 RRTIEEMTDTYINVGEY--------------------------EVAIIGDY------ERAMAAKQAIEMLAEGRMHSTVY 167 (191)
T ss_dssp HHHHHHHHTCEEEECSS--------------------------EEEEEEEH------HHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHCceEEEcCC--------------------------EEEEEeCh------HHHHHHHHHHHHHHcCCCchhHH
Confidence 57899999999999652 25555543 2378999999999875321
Q ss_pred -----chhHHHHHHHHHH
Q 039634 78 -----SLDHYKKQQLREL 90 (127)
Q Consensus 78 -----~~delK~~QL~eL 90 (127)
-..++|+..|++|
T Consensus 168 ~~~~~~~~~~k~~~~~~~ 185 (191)
T 1tua_A 168 RHLERIMREIKRRERLKM 185 (191)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 1345566666443
No 34
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=88.33 E-value=0.6 Score=31.77 Aligned_cols=44 Identities=9% Similarity=0.091 Sum_probs=33.2
Q ss_pred chhhhhhcCcE-EEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcCC
Q 039634 2 TPEVDLLIKFK-VSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKP 74 (127)
Q Consensus 2 ~K~LE~eTgcK-I~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~p 74 (127)
.|+|+++||++ |.|-- ++=.|.|.|.+.+. +++|.++|+.+-..
T Consensus 37 Ik~I~e~tGv~~IdI~e------------------------ddG~V~I~g~~~ea-----~~~A~~~I~~ie~~ 81 (91)
T 2cpq_A 37 IQQARKVPGVTAIELDE------------------------DTGTFRIYGESADA-----VKKARGFLEFVEDF 81 (91)
T ss_dssp HHHHHTSTTEEEEEEET------------------------TTTEEEEEESSHHH-----HHHHHHHHSCCCCC
T ss_pred HHHHHHHhCCeEEEEEc------------------------CCCEEEEEECCHHH-----HHHHHHHHHhhheE
Confidence 57889999998 98842 11358899988654 79999999877554
No 35
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=88.01 E-value=0.33 Score=43.09 Aligned_cols=42 Identities=12% Similarity=0.066 Sum_probs=32.4
Q ss_pred CchhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhc
Q 039634 1 MTPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLL 72 (127)
Q Consensus 1 ~~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL 72 (127)
++|.|+++|||+|.|-=-| .|.|.|.+++. +++|+++|+.++
T Consensus 588 ~Ik~I~e~tg~~I~I~d~G-------------------------~V~I~~~~~~~-----~~~A~~~I~~i~ 629 (630)
T 3u1k_A 588 NLKKLQAETGVTISQVDEE-------------------------TFSVFAPTPSA-----MHEARDFITEIC 629 (630)
T ss_dssp HHHHHHHHHCCEEEECSSS-------------------------EEEEEESSHHH-----HHHHHHHTTC--
T ss_pred hHHHHHHHHCCEEEEcCCc-------------------------EEEEEeCCHHH-----HHHHHHHHHHHh
Confidence 3689999999999885333 57899988654 799999998876
No 36
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=86.58 E-value=1.1 Score=31.75 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=30.5
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhc
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLL 72 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL 72 (127)
+|+|+++|||+|.|--.+ .++ ..+--|.|+| +++ .+.+|...|.+++
T Consensus 25 Ik~i~~~tg~~I~i~~~~--------------~~~----~~~r~v~I~G-~~e-----~v~~A~~~I~~~~ 71 (163)
T 3krm_A 25 IKQLSRFASASIKIAPPE--------------TPD----SKVRMVIITG-PPE-----AQFKAQGRIYGKL 71 (163)
T ss_dssp HHHHHHHHTCEEEECCCS--------------STT----CSEEEEEEEE-CHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCeEEEcCCC--------------CCC----CCceEEEEEc-CHH-----HHHHHHHHHHHHH
Confidence 589999999999997644 111 2234588888 433 3566666665544
No 37
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=86.11 E-value=1.1 Score=32.01 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=34.7
Q ss_pred chhhhhhcCc-EEEEecCCCCCCccccccccCCCCCCCCCCCCc-eEEEEecCcHHHHHHHHHHHHHHHHhhcC
Q 039634 2 TPEVDLLIKF-KVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPL-HMLVEAEFPEVIINSCLDHAVAILENLLK 73 (127)
Q Consensus 2 ~K~LE~eTgc-KI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epL-HVlI~a~~~~~~~~~~l~~A~~~Ie~lL~ 73 (127)
+|.+++.||| +|.|.+.. .. ..+ .++.+ -|.|+|.- ..++.|..+|+..|.
T Consensus 89 Ir~i~~~tG~~~I~i~~~~------~~-----~~~----~~~~~~~vtI~G~~------~~v~~Ak~li~~~l~ 141 (144)
T 2qnd_A 89 IQEIVDKSGVVRVRIEAEN------EK-----NVP----QEEGMVPFVFVGTK------DSIANATVLLDYHLN 141 (144)
T ss_dssp HHHHHHHHTCSEEEEEEEC------TT-----CCC----CCTTEEEEEEEEEH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEEEcCCC------CC-----Ccc----ccCCeeEEEEEeCH------HHHHHHHHHHHHHHH
Confidence 5788999998 99998755 11 011 12332 36788865 348999999998875
No 38
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=84.18 E-value=1.5 Score=33.90 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=32.6
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcCCC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKPV 75 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~p~ 75 (127)
+|.||..|||+|.|-|+ .|.|.|.- ..++.|...|+++|.-.
T Consensus 151 ik~ie~~Tg~~I~v~~~--------------------------~v~i~G~~------~~i~~A~~~i~~li~g~ 192 (219)
T 2e3u_A 151 RQIIEEMSGASVSVYGK--------------------------TVAIIGNP------IQIEIAKTAIEKLARGS 192 (219)
T ss_dssp HHHHHHHHCCEEEEETT--------------------------EEEEEECH------HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCceEEECCe--------------------------EEEEEeCH------HHHHHHHHHHHHHHcCC
Confidence 57899999999999541 26677754 34789999999999753
No 39
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=65.02 E-value=8.4 Score=29.58 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=30.6
Q ss_pred chhhhhhcCcEEEEec-CCCCCCccccccccCCCCCCCCCCCCceEEEEecC----cHHHHHHHHHHHHHHHHhhcC
Q 039634 2 TPEVDLLIKFKVSING-CPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEF----PEVIINSCLDHAVAILENLLK 73 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRG-kG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~----~~~~~~~~l~~A~~~Ie~lL~ 73 (127)
.+.|+++|||+|.|-- .| .|.|.+.+ ++ .+++|.++|+.+..
T Consensus 56 Ik~I~e~tgvkI~I~~~~g-------------------------~V~I~~~~~t~d~~-----~i~kA~~~I~~i~r 102 (219)
T 2e3u_A 56 KKEIEKRTKTKITIDSETG-------------------------EVWITSTKETEDPL-----AVWKARDIVLAIGR 102 (219)
T ss_dssp HHHHHHHHTEEEEECTTTC-------------------------EEEEEECTTCCSHH-----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHCcEEEEEcCCC-------------------------EEEEecCCCCCCHH-----HHHHHHHHHHHHhc
Confidence 4789999999999952 22 24555544 43 38999999999884
No 40
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=60.70 E-value=5 Score=33.51 Aligned_cols=51 Identities=12% Similarity=0.045 Sum_probs=31.1
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLK 73 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~ 73 (127)
+++|..+|||+|.+-..+ +-.|. ..+.-.|.|+|.- +.+..|.+.|..+|=
T Consensus 210 IkkIr~eTGv~I~FP~~~------d~~d~---------~~~~~~ItItGs~------e~V~~Ark~I~~lLP 260 (376)
T 3n89_A 210 MPVIERETTTIISYPCYN------NRNET---------RGNIYEIKVVGNI------DNVLKARRYIMDLLP 260 (376)
T ss_dssp HHHHHHHHTCEEECC------------------------CCEEEEEEESCH------HHHHHHHHHHHHTSE
T ss_pred HHHHHHhhCCEEECCCCC------Ccccc---------cCCceEEEEEeCH------HHHHHHHHHHHhhCC
Confidence 478888999988876655 21110 0122467888732 458999999999874
No 41
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=58.30 E-value=27 Score=23.66 Aligned_cols=29 Identities=14% Similarity=0.064 Sum_probs=17.7
Q ss_pred CceEEEEecCcHHHHHHHHHHHHHHHHhhc
Q 039634 43 PLHMLVEAEFPEVIINSCLDHAVAILENLL 72 (127)
Q Consensus 43 pLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL 72 (127)
-++|+++|.+.+ .++..++...+.|+.++
T Consensus 69 ~irvy~Ea~~~~-~~~~~~~~~~~~i~~~~ 97 (112)
T 1wjw_A 69 IVRVYAEANSQE-SADRLAYEVSLLVFQLA 97 (112)
T ss_dssp SEEEEEEESSHH-HHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEECCHH-HHHHHHHHHHHHHHHHH
Confidence 489999999853 34444455555554443
No 42
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=54.14 E-value=3.3 Score=30.53 Aligned_cols=20 Identities=5% Similarity=0.094 Sum_probs=17.7
Q ss_pred chhhhhhcCcEEEEecCCCC
Q 039634 2 TPEVDLLIKFKVSINGCPYT 21 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~ 21 (127)
+++||++.|+++.+|++|..
T Consensus 41 i~~LE~~lg~~Lf~R~~~~~ 60 (303)
T 3isp_A 41 IKSLEQQVGQVLVVREKPCR 60 (303)
T ss_dssp HHHHHHHHTSCCEECSSSCE
T ss_pred HHHHHHHhCCeeEEcCCCCe
Confidence 68999999999999997744
No 43
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=54.09 E-value=18 Score=24.85 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=19.3
Q ss_pred CCCceEEEEecCcHH--HHHHHHHHHHHHHHhhcCC
Q 039634 41 NEPLHMLVEAEFPEV--IINSCLDHAVAILENLLKP 74 (127)
Q Consensus 41 ~epLHVlI~a~~~~~--~~~~~l~~A~~~Ie~lL~p 74 (127)
..+|+|.|....|.+ . =....+++++++..
T Consensus 67 ~GDL~V~~~V~~P~~~~l----s~~q~~~l~~l~~~ 98 (121)
T 1xao_A 67 YGNLIIKFTIKFPENHFT----SEENLKKLEEILPP 98 (121)
T ss_dssp CCCEEEEEEEECCCTTCS----CHHHHHHHHHHSCC
T ss_pred CCCEEEEEEEECCCCCCC----CHHHHHHHHHHccc
Confidence 367999998888753 1 13445667777753
No 44
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=52.61 E-value=2.8 Score=30.72 Aligned_cols=21 Identities=5% Similarity=0.001 Sum_probs=11.8
Q ss_pred chhhhhhcCcEEEEe--cCCCCC
Q 039634 2 TPEVDLLIKFKVSIN--GCPYTY 22 (127)
Q Consensus 2 ~K~LE~eTgcKI~IR--GkG~~~ 22 (127)
+++||++.|+++.+| |+|..+
T Consensus 39 i~~LE~~lg~~Lf~R~~~~~~~l 61 (306)
T 3fzv_A 39 VKGLEESFGVQLFIRHHAQGVSL 61 (306)
T ss_dssp HHHHHHHC-CCCC---------C
T ss_pred HHHHHHHhCCeeEeecCCCCceE
Confidence 689999999999999 477544
No 45
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=52.56 E-value=22 Score=29.61 Aligned_cols=50 Identities=8% Similarity=0.060 Sum_probs=32.0
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhh
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENL 71 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~l 71 (127)
+++|.+||||+|.+=-.+ + ++.. +. ..-==|.|+|.- +.+++|.+.|.++
T Consensus 54 IkkImeEtgv~I~fPD~~------~--~~~~--~~----~ks~~VtItG~~------enVE~AR~~I~~l 103 (376)
T 3n89_A 54 VASIMAETNTLIQLPDRS------V--GGTT--PD----PFAQQVTITGYF------GDVDRARMLMRRN 103 (376)
T ss_dssp HHHHHHHHTCEEECCCCC------C--CSSS--CC----TTTTEEEEEEEH------HHHHHHHHHHHHS
T ss_pred HHHHHHHhCCeEECCCCc------c--cccC--Cc----CCCCeEEEEcCH------HHHHHHHHHHHhc
Confidence 578999999999994322 0 1100 00 011138888876 3588999999885
No 46
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=50.17 E-value=4.1 Score=36.75 Aligned_cols=43 Identities=19% Similarity=0.112 Sum_probs=10.4
Q ss_pred chhhhhhcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhcCC
Q 039634 2 TPEVDLLIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLLKP 74 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL~p 74 (127)
+|.|+++||++|.|-=.| .|.|.+.+.+. +++|.+.|+.++..
T Consensus 592 i~~i~~~tg~~idi~ddG-------------------------~v~I~~~~~~~-----~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 592 IREIVATTGAKVDINDDG-------------------------VVKVSASDGAK-----IKAAIDWIKSITDE 634 (726)
T ss_dssp -----------------------------------------------CCSCHHH-----HHHHHHC-------
T ss_pred HHHHHHHHCCceeEECCc-------------------------eEEEEeCCHHH-----HHHHHHHHHHHhhh
Confidence 567777888877664333 45677777543 78888888888764
No 47
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=48.34 E-value=3.7 Score=29.54 Aligned_cols=18 Identities=6% Similarity=0.021 Sum_probs=0.0
Q ss_pred chhhhhhcCcEEEEecCC
Q 039634 2 TPEVDLLIKFKVSINGCP 19 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG 19 (127)
+|+||++.|+++.+|+..
T Consensus 33 i~~LE~~lg~~Lf~R~~~ 50 (300)
T 3mz1_A 33 IQGLEAHLRTKLLNRTTR 50 (300)
T ss_dssp ------------------
T ss_pred HHHHHHHhCCeeEecCCC
Confidence 689999999999999543
No 48
>2kie_A Inositol polyphosphate 5-phosphatase OCRL-1; INPP5B, clathrin, endocytosis, alternative splicing, cataract, disease mutation, hydrolase; NMR {Homo sapiens}
Probab=40.39 E-value=12 Score=26.83 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=11.4
Q ss_pred hhhhcCcEEEEecC
Q 039634 5 VDLLIKFKVSINGC 18 (127)
Q Consensus 5 LE~eTgcKI~IRGk 18 (127)
|-..|||||.|+|-
T Consensus 81 IasntgcKIRvqgd 94 (124)
T 2kie_A 81 IASNSGCKIRVQGD 94 (124)
T ss_dssp GGGCSSEEEEEESS
T ss_pred ccCCCCcEEEEecc
Confidence 44578999999994
No 49
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=34.86 E-value=41 Score=24.48 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=17.9
Q ss_pred CCceEEEEecCcHHHHHHHHHHHHHHHHhhc
Q 039634 42 EPLHMLVEAEFPEVIINSCLDHAVAILENLL 72 (127)
Q Consensus 42 epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL 72 (127)
-+|+|.+....|.+. =+...++++++|
T Consensus 153 GDL~V~~~V~~P~~l----s~~q~~~l~~~~ 179 (181)
T 3agx_A 153 GDLIIEFEVIFPERI----PQTSRTVLEQVL 179 (181)
T ss_dssp CCEEEEEEEECCSCC----CHHHHHHHHHHS
T ss_pred CCEEEEEEEECCCCC----CHHHHHHHHHhc
Confidence 679999988887541 134456677666
No 50
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=31.89 E-value=13 Score=26.51 Aligned_cols=18 Identities=0% Similarity=0.027 Sum_probs=15.8
Q ss_pred chhhhhhcCcEEEEecCC
Q 039634 2 TPEVDLLIKFKVSINGCP 19 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG 19 (127)
+|+||++.|+++.+|...
T Consensus 36 i~~LE~~lg~~Lf~R~~~ 53 (291)
T 3szp_A 36 IQALEDSLNLRLLNRHAR 53 (291)
T ss_dssp HHHHHHHHTCCCEEEETT
T ss_pred HHHHHHHhCCceEeecCC
Confidence 689999999999999544
No 51
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=30.25 E-value=69 Score=21.47 Aligned_cols=15 Identities=13% Similarity=0.290 Sum_probs=11.4
Q ss_pred CCCceEEEEecCcHH
Q 039634 41 NEPLHMLVEAEFPEV 55 (127)
Q Consensus 41 ~epLHVlI~a~~~~~ 55 (127)
..+|+|.|....|.+
T Consensus 67 ~GDL~v~~~V~~P~~ 81 (109)
T 3i38_A 67 TGDLFAVIKIVMPTK 81 (109)
T ss_dssp BCCEEEEEEECCCSS
T ss_pred CcCEEEEEEEECCCC
Confidence 467999998887754
No 52
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=30.19 E-value=55 Score=23.73 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=26.7
Q ss_pred hcCcEEEEecCCCCCCccccccccCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHHHHhhc
Q 039634 8 LIKFKVSINGCPYTYTSLSIKVEIKDKPGYEHLNEPLHMLVEAEFPEVIINSCLDHAVAILENLL 72 (127)
Q Consensus 8 eTgcKI~IRGkG~~~~~~S~Kd~~~~~~~~eh~~epLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL 72 (127)
..|.++.|+|+| +.... .+ ..--+|+|.+....|.+.- +...++++++|
T Consensus 131 ~~g~~~rl~g~G-------mp~~~--~~---~~~GDL~V~~~V~~P~~Ls----~~q~~~l~~~~ 179 (180)
T 2q2g_A 131 NPKTRKIVPNEG-------MPIKN--QP---GQKGDLILEFDICFPKSLT----PEQKKLIKEAL 179 (180)
T ss_dssp CTTCEEEETTCS-------CBCSS--ST---TCBCCEEEEEEEECCSCCC----HHHHHHHHHHC
T ss_pred CCCEEEEECCcC-------CCcCC--CC---CCcCCEEEEEEEECCCCCC----HHHHHHHHHhc
Confidence 356777777777 21110 01 1236799999888875410 23345555554
No 53
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=29.29 E-value=15 Score=26.64 Aligned_cols=18 Identities=0% Similarity=-0.058 Sum_probs=15.7
Q ss_pred chhhhhhcCcEEEEecCC
Q 039634 2 TPEVDLLIKFKVSINGCP 19 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG 19 (127)
+|+||++.|+++.+|...
T Consensus 38 i~~LE~~lg~~Lf~R~~~ 55 (306)
T 3hhg_A 38 VKRLEEKLGVNLLNRTTR 55 (306)
T ss_dssp HHHHHHHHTSCCEETTSS
T ss_pred HHHHHHHhCCeeEeecCC
Confidence 689999999999999544
No 54
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=26.90 E-value=18 Score=26.42 Aligned_cols=18 Identities=0% Similarity=-0.160 Sum_probs=15.7
Q ss_pred chhhhhhcCcEEEEecCC
Q 039634 2 TPEVDLLIKFKVSINGCP 19 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG 19 (127)
+|+||++.|+++.+|...
T Consensus 45 I~~LE~~lg~~Lf~R~~~ 62 (310)
T 2esn_A 45 LGRLRQGLDDELFLRQGN 62 (310)
T ss_dssp HHHHHHHHTSCCEEEETT
T ss_pred HHHHHHhhCCcceeecCC
Confidence 689999999999999643
No 55
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form, enzyme-metal COMP isomerase; 2.00A {Pyrococcus horikoshii}
Probab=26.56 E-value=94 Score=25.49 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=20.4
Q ss_pred CceEEEEecCcHHHHHHHHHHHHHHHHhhc
Q 039634 43 PLHMLVEAEFPEVIINSCLDHAVAILENLL 72 (127)
Q Consensus 43 pLHVlI~a~~~~~~~~~~l~~A~~~Ie~lL 72 (127)
-++|++|+.+++ .+++.++...+.|++++
T Consensus 426 ~irvy~Ea~~~~-~~~~l~~~~~~~i~~~~ 454 (455)
T 1wqa_A 426 IIRIFSEAKSKE-KAQEYLNLGIELLEKAL 454 (455)
T ss_dssp BCCEEEEESSHH-HHHHHHHHHHHHHHHHT
T ss_pred eEEEEEEECCHH-HHHHHHHHHHHHHHHhh
Confidence 489999999864 45666666666666554
No 56
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=22.21 E-value=19 Score=26.68 Aligned_cols=18 Identities=6% Similarity=0.119 Sum_probs=0.0
Q ss_pred chhhhhhcCcEEEEecCC
Q 039634 2 TPEVDLLIKFKVSINGCP 19 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG 19 (127)
+|+||++.|+++.+|+..
T Consensus 36 I~~LE~~lg~~Lf~R~~r 53 (312)
T 2h9b_A 36 IQNLEEELGIQLLERGSR 53 (312)
T ss_dssp ------------------
T ss_pred HHHHHHHhCCEeEeeCCC
Confidence 689999999999999643
No 57
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=22.00 E-value=16 Score=26.38 Aligned_cols=18 Identities=0% Similarity=-0.106 Sum_probs=13.3
Q ss_pred chhhhhhcCcEEEEecCC
Q 039634 2 TPEVDLLIKFKVSINGCP 19 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG 19 (127)
+|+||++.|+++.+|...
T Consensus 36 i~~LE~~lg~~Lf~R~~~ 53 (294)
T 1ixc_A 36 MQALEADLGVVLLERSHR 53 (294)
T ss_dssp HHHHHHHHTSCCBC----
T ss_pred HHHHHHHHCCEEEEeCCC
Confidence 689999999999999743
No 58
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=21.47 E-value=27 Score=25.51 Aligned_cols=18 Identities=6% Similarity=0.003 Sum_probs=15.9
Q ss_pred chhhhhhcCcEEEEecCC
Q 039634 2 TPEVDLLIKFKVSINGCP 19 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG 19 (127)
+++||++.|+++.+|...
T Consensus 37 i~~LE~~lg~~Lf~R~~r 54 (305)
T 3fxq_A 37 IQQLEDELKAPLLVRTKR 54 (305)
T ss_dssp HHHHHHHHTSCSEEECSS
T ss_pred HHHHHHHhCCeeEEecCC
Confidence 689999999999999755
No 59
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=20.74 E-value=21 Score=26.71 Aligned_cols=18 Identities=6% Similarity=0.095 Sum_probs=0.0
Q ss_pred chhhhhhcCcEEEEecCC
Q 039634 2 TPEVDLLIKFKVSINGCP 19 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG 19 (127)
+|+||++.|+++.+|...
T Consensus 36 I~~LE~~lG~~Lf~R~~r 53 (313)
T 2h98_A 36 IQKLEEELGIQLFERGFR 53 (313)
T ss_dssp ------------------
T ss_pred HHHHHHHhCCeeEEcCCC
Confidence 689999999999999643
No 60
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=20.48 E-value=21 Score=26.47 Aligned_cols=18 Identities=0% Similarity=-0.042 Sum_probs=0.0
Q ss_pred chhhhhhcCcEEEEecCC
Q 039634 2 TPEVDLLIKFKVSINGCP 19 (127)
Q Consensus 2 ~K~LE~eTgcKI~IRGkG 19 (127)
+|+||++.|+++.+|...
T Consensus 49 I~~LE~~lg~~Lf~R~~r 66 (315)
T 1uth_A 49 LKRLRTALNDDLFLRTSK 66 (315)
T ss_dssp ------------------
T ss_pred HHHHHHHhCCcceeecCC
Confidence 689999999999999744
Done!