BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039635
         (579 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1V5N|A Chain A, Solution Structure Of Dc1 Domain Of Pdi-Like Hypothetical
           Protein From Arabidopsis Thaliana
          Length = 89

 Score = 40.0 bits (92), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 173 CSELPQQVLHPFHAHHSLKLQNTFRGLLYCDACD--SMIMSAKHYRCDECDFDLHLDC 228
             + P++V H  H  H L+L  T   +  CD C+    I S   Y CDECDFDLH  C
Sbjct: 23  AKDWPKKVKHVLHEEHELEL--TRVQVYTCDKCEEEGTIWS---YHCDECDFDLHAKC 75



 Score = 34.3 bits (77), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 412 MPRQIQHVLHR-HPLTVTTNDGERGRTCDACQKYLHGHIYKCDSCDFVLDFDCA 464
            P++++HVLH  H L +T     +  TCD C++      Y CD CDF L   CA
Sbjct: 26  WPKKVKHVLHEEHELELTRV---QVYTCDKCEEEGTIWSYHCDECDFDLHAKCA 76


>pdb|3RWL|A Chain A, Structure Of P450pyr Hydroxylase
          Length = 426

 Score = 33.9 bits (76), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)

Query: 296 HHGHSLTLTLPTDSFVKDKFDLFYCDACKE---EIDPQNPFCCCIECGYYIHWRCTVIEV 352
           H G S   T+P DS      +LFY D+  E    +   +P   C +  +  +W  T    
Sbjct: 13  HTGQSAAATMPLDSIDVSIPELFYNDSVGEYFKRLRKDDPVHYCADSAFGPYWSIT---- 68

Query: 353 PLNDTLVHFDHNHFLLPLENG 373
             ND ++H D NH +   + G
Sbjct: 69  KYND-IMHVDTNHDIFSSDAG 88


>pdb|2FNF|X Chain X, C1 Domain Of Nore1
          Length = 72

 Score = 30.4 bits (67), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 20/46 (43%)

Query: 133 SHRHPLIRLEVDEEWCRICRNNILGPSYGCLPCKFYIHNSCSELPQ 178
            HR   + L     WC +C   +L  +  C  CKF  H+ C  L Q
Sbjct: 23  GHRFVELALRGGPGWCDLCGREVLRQALRCANCKFTCHSECRSLIQ 68


>pdb|1RFH|A Chain A, Solution Structure Of The C1 Domain Of Nore1, A Novel Ras
           Effector
          Length = 59

 Score = 30.0 bits (66), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 20/45 (44%)

Query: 134 HRHPLIRLEVDEEWCRICRNNILGPSYGCLPCKFYIHNSCSELPQ 178
           HR   + L     WC +C   +L  +  C  CKF  H+ C  L Q
Sbjct: 11  HRFVELALRGGPGWCDLCGREVLRQALRCANCKFTCHSECRSLIQ 55


>pdb|2ELI|A Chain A, Solution Structure Of The Second Phorbol
           EstersDIACYLGLYCEROL BINDING DOMAIN OF HUMAN PROTEIN
           Kinase C Alpha Type
          Length = 85

 Score = 29.3 bits (64), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 186 AHHSLKLQNTFRGLLYCDACDSMIMSAKH--YRCDECDFDLHLDCISVKPKI 235
           + H  K+ +T+    +CD C S++    H   +CD CD ++H  C+   P +
Sbjct: 16  SKHKFKI-HTYGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINVPSL 66


>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
           Kinase C Beta Ii
          Length = 674

 Score = 28.9 bits (63), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 15/103 (14%)

Query: 147 WCRICRNNILG---PSYGCLPCKFYIHNSCSEL-----PQQVLHPF----HAHHSLKLQN 194
           +C  C + I G     + C  C F +H  C E      P     P      + H  K+ +
Sbjct: 50  FCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKI-H 108

Query: 195 TFRGLLYCDACDSMIMSAKH--YRCDECDFDLHLDCISVKPKI 235
           T+    +CD C S++    H   +CD C  ++H  C+   P +
Sbjct: 109 TYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSL 151


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.141    0.488 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,864,688
Number of Sequences: 62578
Number of extensions: 876524
Number of successful extensions: 2557
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2516
Number of HSP's gapped (non-prelim): 59
length of query: 579
length of database: 14,973,337
effective HSP length: 104
effective length of query: 475
effective length of database: 8,465,225
effective search space: 4020981875
effective search space used: 4020981875
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)