BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039635
(579 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7Y0E8|NRX11_ORYSJ Probable nucleoredoxin 1-1 OS=Oryza sativa subsp. japonica
GN=Os03g0405500 PE=2 SV=1
Length = 569
Score = 41.2 bits (95), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 169 IHNSCSELPQQVLHPFHAHHSLKLQN-TFRGLLYCDACDSMIMSAKHYRCDECDFDLHLD 227
I P ++ H H H L L T G CD CD M S+ YRC ECDFDLH
Sbjct: 483 IDEMAKGWPGKLKHELHDEHELVLTRCTTYG---CDGCDEM-GSSWSYRCRECDFDLHPK 538
Query: 228 C 228
C
Sbjct: 539 C 539
>sp|Q7Y0F2|NRX12_ORYSJ Probable nucleoredoxin 1-2 OS=Oryza sativa subsp. japonica
GN=Os03g0405900 PE=2 SV=1
Length = 581
Score = 40.8 bits (94), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 169 IHNSCSELPQQVLHPFHAHHSLKLQNTFRGLLYCDACDSMIMSAKHYRCDECDFDLHLDC 228
I++ P+++ H H H + + T G CD CD M + YRC ECDFDLH C
Sbjct: 494 INDMAKGWPEKLKHDLHDHELVLTRCTTYG---CDGCDEM-GDSWSYRCKECDFDLHPKC 549
>sp|O80763|NRX1_ARATH Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1
SV=1
Length = 578
Score = 39.3 bits (90), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 173 CSELPQQVLHPFHAHHSLKLQNTFRGLLYCDACD--SMIMSAKHYRCDECDFDLHLDCIS 230
+ P++V H H H L+L T + CD C+ I S Y CDECDFDLH C +
Sbjct: 491 AKDWPKKVKHVLHEEHELEL--TRVQVYTCDKCEEEGTIWS---YHCDECDFDLHAKC-A 544
Query: 231 VKPKIRYQGQEHLLV 245
+ + G E + V
Sbjct: 545 LNEDTKENGDEAVKV 559
Score = 33.1 bits (74), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 409 CAQMPRQIQHVLHR-HPLTVTTNDGERGRTCDACQKYLHGHIYKCDSCDFVLDFDCA 464
P++++HVLH H L +T + TCD C++ Y CD CDF L CA
Sbjct: 491 AKDWPKKVKHVLHEEHELELTRV---QVYTCDKCEEEGTIWSYHCDECDFDLHAKCA 544
>sp|Q0JIL1|NRX2_ORYSJ Probable nucleoredoxin 2 OS=Oryza sativa subsp. japonica
GN=Os01g0794400 PE=2 SV=1
Length = 394
Score = 33.1 bits (74), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 227 DCISVKPKIRYQGQEHLLVLM--KSGSGTTTCQACSFDTKPGAFFVRCVECDFKFHVQCG 284
D P +R+ G H L ++ KSG G C C D + + +C+ C ++ H++CG
Sbjct: 329 DAKGYPPSLRHTGHRHELSIVSDKSGGGPYIC--CECDEQGLGWAYQCIACGYEIHLRCG 386
>sp|Q5HZN1|KD3AB_XENLA Lysine-specific demethylase 3A-B OS=Xenopus laevis GN=kdm3a-b PE=2
SV=1
Length = 1334
Score = 32.7 bits (73), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 178 QQVLHPFHAHHSLKLQNTFRGLL-YCDACDSMIMSAKHYRCDECDFDLHLDCISVKPKIR 236
++V+ + + RG+ CDACD+ I + H+ C +C F + +DC ++ K
Sbjct: 659 KEVMSSTDPSKQVAWKRAVRGVREMCDACDTTIFNL-HWVCPKCGFGVCVDCYRMRKKSL 717
Query: 237 YQGQE 241
G+E
Sbjct: 718 SSGEE 722
>sp|Q9W0T1|NU301_DROME Nucleosome-remodeling factor subunit NURF301 OS=Drosophila
melanogaster GN=E(bx) PE=1 SV=2
Length = 2669
Score = 32.7 bits (73), Expect = 8.2, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 3/107 (2%)
Query: 179 QVLHPFHAHHSLKLQNTFRGLLYCDACDSMIMSAKHY-RCDECDFDLHLDCISVKPKIRY 237
+V +P H K + LYC C + K Y CD C H DC+S+ +
Sbjct: 2419 EVQNPRHGAGRPKKLTRKKEKLYC-ICRTPYDDTKFYVGCDLCSNWFHGDCVSITEEASK 2477
Query: 238 QGQEHLLVLMKSGSGTTTCQ-ACSFDTKPGAFFVRCVECDFKFHVQC 283
+ E + + K T +C F++ C +C FH +C
Sbjct: 2478 KLSEFICIDCKRARETQQLYCSCRQPYDESQFYICCDKCQDWFHGRC 2524
>sp|Q6IRB8|KD3AA_XENLA Lysine-specific demethylase 3A-A OS=Xenopus laevis GN=kdm3a-a PE=2
SV=1
Length = 1331
Score = 32.7 bits (73), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 178 QQVLHPFHAHHSLKLQNTFRGLL-YCDACDSMIMSAKHYRCDECDFDLHLDCISVKPKIR 236
++V+ + + RG+ CDACD+ I + H+ C +C F + +DC +K K
Sbjct: 658 KEVMSATDPSKQVAWKRAVRGVREMCDACDTTIFNL-HWVCPKCGFGVCVDCYRMKKKSL 716
Query: 237 YQGQE 241
G++
Sbjct: 717 SSGED 721
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.141 0.488
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 238,419,183
Number of Sequences: 539616
Number of extensions: 10521934
Number of successful extensions: 28296
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 28012
Number of HSP's gapped (non-prelim): 403
length of query: 579
length of database: 191,569,459
effective HSP length: 123
effective length of query: 456
effective length of database: 125,196,691
effective search space: 57089691096
effective search space used: 57089691096
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 64 (29.3 bits)